BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0001 Length=507 Score E Sequences producing significant alignments: (Bits) Value gi|15607143|ref|NP_214515.1| chromosomal replication initiation ... 1038 0.0 gi|9845531|gb|AAB38528.2| chromosomal replication initiator prot... 1036 0.0 gi|121635884|ref|YP_976107.1| chromosomal replication initiation... 1034 0.0 gi|31791178|ref|NP_853671.1| chromosomal replication initiation ... 1034 0.0 gi|308232614|ref|ZP_07416626.2| chromosomal replication initiato... 1014 0.0 gi|183980036|ref|YP_001848327.1| chromosomal replication initiat... 882 0.0 gi|118615920|ref|YP_904252.1| chromosomal replication initiation... 877 0.0 gi|254818679|ref|ZP_05223680.1| chromosomal replication initiati... 877 0.0 gi|254773054|ref|ZP_05214570.1| chromosomal replication initiati... 873 0.0 gi|41406099|ref|NP_958935.1| chromosomal replication initiation ... 873 0.0 gi|296167143|ref|ZP_06849550.1| DNA-directed DNA replication ini... 872 0.0 gi|342862353|ref|ZP_08718994.1| chromosomal replication initiati... 872 0.0 gi|6226596|sp|P49990.2|DNAA_MYCAV RecName: Full=Chromosomal repl... 869 0.0 gi|240172091|ref|ZP_04750750.1| chromosomal replication initiati... 869 0.0 gi|886325|gb|AAB53141.1| chromosomal replication initiator prote... 865 0.0 gi|221229344|ref|YP_002502760.1| chromosomal replication initiat... 863 0.0 gi|15826866|ref|NP_301129.1| chromosomal replication initiation ... 860 0.0 gi|14195657|sp|P46388.3|DNAA_MYCLE RecName: Full=Chromosomal rep... 860 0.0 gi|118466558|ref|YP_879304.1| chromosomal replication initiation... 854 0.0 gi|108796982|ref|YP_637179.1| chromosomal replication initiation... 802 0.0 gi|145221421|ref|YP_001132099.1| chromosomal replication initiat... 801 0.0 gi|169627109|ref|YP_001700758.1| chromosomal replication initiat... 801 0.0 gi|315441697|ref|YP_004074576.1| chromosomal replication initiat... 800 0.0 gi|118474040|ref|YP_891139.1| chromosomal replication initiation... 796 0.0 gi|120401029|ref|YP_950858.1| chromosomal replication initiation... 793 0.0 gi|333988641|ref|YP_004521255.1| chromosomal replication initiat... 786 0.0 gi|262200047|ref|YP_003271255.1| chromosomal replication initiat... 693 0.0 gi|343928735|ref|ZP_08768180.1| chromosomal replication initiato... 689 0.0 gi|111020655|ref|YP_703627.1| chromosomal replication initiation... 681 0.0 gi|226362895|ref|YP_002780675.1| chromosomal replication initiat... 678 0.0 gi|325677520|ref|ZP_08157184.1| replication initiation protein D... 674 0.0 gi|312137515|ref|YP_004004851.1| chromosome replication initiato... 674 0.0 gi|226303490|ref|YP_002763448.1| chromosomal replication initiat... 674 0.0 gi|317509427|ref|ZP_07967045.1| chromosomal replication initiato... 653 0.0 gi|326383909|ref|ZP_08205593.1| chromosomal replication initiati... 650 0.0 gi|339293081|gb|AEJ45192.1| chromosomal replication initiator pr... 647 0.0 gi|296392441|ref|YP_003657325.1| chromosomal replication initiat... 644 0.0 gi|333917680|ref|YP_004491261.1| chromosomal replication initiat... 631 1e-178 gi|324999881|ref|ZP_08120993.1| chromosomal replication initiati... 628 7e-178 gi|296137751|ref|YP_003644994.1| chromosomal replication initiat... 612 6e-173 gi|331693900|ref|YP_004330139.1| Chromosomal replication initiat... 592 4e-167 gi|54021965|ref|YP_116207.1| putative replication initiator prot... 592 5e-167 gi|1079499|gb|AAC43711.1| DnaA protein [Mycobacterium smegmatis]... 579 3e-163 gi|319949431|ref|ZP_08023492.1| chromosomal replication initiati... 565 1e-158 gi|300781938|ref|YP_003762229.1| chromosomal replication initiat... 550 2e-154 gi|134096621|ref|YP_001102282.1| chromosomal replication initiat... 549 4e-154 gi|256374161|ref|YP_003097821.1| chromosomal replication initiat... 548 1e-153 gi|257054090|ref|YP_003131922.1| chromosomal replication initiat... 548 1e-153 gi|302531358|ref|ZP_07283700.1| chromosomal replication initiato... 547 2e-153 gi|258650272|ref|YP_003199428.1| chromosomal replication initiat... 541 7e-152 >gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Rv] gi|15839373|ref|NP_334410.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CDC1551] gi|148659758|ref|YP_001281281.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] 57 more sequence titles Length=507 Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/507 (99%), Positives = 507/507 (100%), Gaps = 0/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG Sbjct 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL Sbjct 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT Sbjct 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 >gi|9845531|gb|AAB38528.2| chromosomal replication initiator protein [Mycobacterium tuberculosis] Length=507 Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/507 (99%), Positives = 507/507 (100%), Gaps = 0/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG Sbjct 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL Sbjct 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT Sbjct 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTTVEELRGPGKTRALAQSRQIA+YLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 421 AEYFDTTVEELRGPGKTRALAQSRQIAVYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 >gi|121635884|ref|YP_976107.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635911|ref|YP_976134.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988384|ref|YP_002643051.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254777908|sp|C1AIZ8.1|DNAA_MYCBT RecName: Full=Chromosomal replication initiator protein DnaA gi|121491531|emb|CAL69985.1| chromosomal replication initiation protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491558|emb|CAL70015.1| Chromosomal replication initiator protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771497|dbj|BAH24303.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] gi|238015793|emb|CAL80727.1| Chromosomal replication initiator protein dnaA [Mycobacterium bovis BCG str. Moreau RDJ] Length=507 Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/507 (99%), Positives = 506/507 (99%), Gaps = 0/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERP NTDSATAGVTSLNRRYTFDTFVIG Sbjct 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPRNTDSATAGVTSLNRRYTFDTFVIG 180 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL Sbjct 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT Sbjct 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 >gi|31791178|ref|NP_853671.1| chromosomal replication initiation protein [Mycobacterium bovis AF2122/97] gi|32700077|sp|P49991.2|DNAA_MYCBO RecName: Full=Chromosomal replication initiator protein DnaA gi|31616763|emb|CAD92863.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium bovis AF2122/97] Length=507 Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/507 (99%), Positives = 506/507 (99%), Gaps = 0/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERP NTDSATAGVTSLNRRYTFDTFVIG Sbjct 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPRNTDSATAGVTSLNRRYTFDTFVIG 180 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLA+PDDVLEL Sbjct 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAIPDDVLEL 360 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT Sbjct 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 >gi|308232614|ref|ZP_07416626.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308369280|ref|ZP_07417156.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308371505|ref|ZP_07425168.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] 13 more sequence titles Length=496 Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/496 (99%), Positives = 496/496 (100%), Gaps = 0/496 (0%) Query 12 VWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQ 71 +WNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQ Sbjct 1 MWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQ 60 Query 72 NEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDND 131 NEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDND Sbjct 61 NEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDND 120 Query 132 EIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAAL 191 EIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAAL Sbjct 121 EIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAAL 180 Query 192 AIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLR 251 AIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLR Sbjct 181 AIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLR 240 Query 252 DDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQL 311 DDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQL Sbjct 241 DDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQL 300 Query 312 ATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRE 371 ATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRE Sbjct 301 ATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRE 360 Query 372 LEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEEL 431 LEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEEL Sbjct 361 LEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEEL 420 Query 432 RGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVF 491 RGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVF Sbjct 421 RGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVF 480 Query 492 DHVKELTTRIRQRSKR 507 DHVKELTTRIRQRSKR Sbjct 481 DHVKELTTRIRQRSKR 496 >gi|183980036|ref|YP_001848327.1| chromosomal replication initiator protein DnaA [Mycobacterium marinum M] gi|226735828|sp|B2HI46.1|DNAA_MYCMM RecName: Full=Chromosomal replication initiator protein DnaA gi|183173362|gb|ACC38472.1| Chromosomal replication initiator protein DnaA [Mycobacterium marinum M] Length=510 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/510 (88%), Positives = 467/510 (92%), Gaps = 3/510 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +T+DPGSGF VWNAVV+ELNG+P D + L++PLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTNDPGSGFAAVWNAVVAELNGEPNTDGDAGTGTTLTSPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLR PIT ALSRRLG QIQLGVRIAPP D+ DD+ E+P Sbjct 61 ALLSVPSSFVQNEIERHLRTPITAALSRRLGQQIQLGVRIAPPPADDDDDSVAAAVEDPG 120 Query 121 T-TSPDTTTD-NDEIDDSAAARGDNQHSWPSYFTERPHNTD-SATAGVTSLNRRYTFDTF 177 SP+T+ + +DEIDD +++ SWP++F +R + D SA+AG TSLNRRYTFDTF Sbjct 121 LEASPETSQEVSDEIDDFGENAPNSRQSWPTHFKKRSTDADTSASAGGTSLNRRYTFDTF 180 Query 178 VIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV 237 VIGASNRFAHAA LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV Sbjct 181 VIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV 240 Query 238 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN 297 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN Sbjct 241 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN 300 Query 298 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV 357 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV Sbjct 301 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV 360 Query 358 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIM 417 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADA TMQISAATIM Sbjct 361 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADAGTMQISAATIM 420 Query 418 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ 477 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ Sbjct 421 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ 480 Query 478 RKILSEMAERREVFDHVKELTTRIRQRSKR 507 RKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 RKILSEMAERREVFDHVKELTTRIRQRSKR 510 >gi|118615920|ref|YP_904252.1| chromosomal replication initiation protein [Mycobacterium ulcerans Agy99] gi|166214684|sp|A0PKB2.1|DNAA_MYCUA RecName: Full=Chromosomal replication initiator protein DnaA gi|118568030|gb|ABL02781.1| chromosomal replication initiator protein DnaA [Mycobacterium ulcerans Agy99] Length=510 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/510 (87%), Positives = 465/510 (92%), Gaps = 3/510 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +T+DPGSGF VWNAVV+ELNG+P D + L++PLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTNDPGSGFAAVWNAVVAELNGEPNTDGDAGTGTTLTSPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLR PIT ALSRRLG QIQLGVRIAPP D+ DD+ E+P Sbjct 61 ALLSVPSSFVQNEIERHLRTPITAALSRRLGQQIQLGVRIAPPPADDDDDSVAAAVEDPG 120 Query 121 T-TSPDTTTD-NDEIDDSAAARGDNQHSWPSYFTERPHNTD-SATAGVTSLNRRYTFDTF 177 SP+T+ + +DEIDD ++ SWP++F +R + D SA+A TSLNRRYTFDTF Sbjct 121 LEASPETSQEVSDEIDDFGENAPKSRQSWPTHFKKRSTDADTSASADGTSLNRRYTFDTF 180 Query 178 VIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV 237 VIGASNRFAHAA LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV Sbjct 181 VIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV 240 Query 238 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN 297 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN Sbjct 241 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN 300 Query 298 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV 357 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV Sbjct 301 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV 360 Query 358 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIM 417 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADA+TMQISAATIM Sbjct 361 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADADTMQISAATIM 420 Query 418 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ 477 AAT EYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ Sbjct 421 AATVEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ 480 Query 478 RKILSEMAERREVFDHVKELTTRIRQRSKR 507 RKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 RKILSEMAERREVFDHVKELTTRIRQRSKR 510 >gi|254818679|ref|ZP_05223680.1| chromosomal replication initiation protein [Mycobacterium intracellulare ATCC 13950] Length=511 Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/512 (89%), Positives = 466/512 (92%), Gaps = 6/512 (1%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGSGFTTVWNAVVSELNGDP D ++ L PLTPQQRAWLNLV+PLTIVEGF Sbjct 1 MTDDPGSGFTTVWNAVVSELNGDPTADGVAANRTTLVTPLTPQQRAWLNLVRPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSE--- 117 ALLSVPSSFVQNEIERHLRAPITDALSRRLG QIQLGVRIAPP D+ +D +PP+E Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPP-DDVEDALIPPAEPFP 119 Query 118 --NPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFD 175 + + D D DE ++ A Q WP+YFTERPH D A A TSLNRRYTFD Sbjct 120 GSDGSIPGDDAALDTDEPFENGEAVDGAQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFD 179 Query 176 TFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVK 235 TFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVK Sbjct 180 TFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVK 239 Query 236 YVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHN 295 YVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHN Sbjct 240 YVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHN 299 Query 296 ANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPD 355 ANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPD Sbjct 300 ANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPD 359 Query 356 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAAT 415 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADA+TMQISAAT Sbjct 360 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADASTMQISAAT 419 Query 416 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMY 475 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMY Sbjct 420 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMY 479 Query 476 AQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 AQRKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 480 AQRKILSEMAERREVFDHVKELTTRIRQRSKR 511 >gi|254773054|ref|ZP_05214570.1| chromosomal replication initiation protein [Mycobacterium avium subsp. avium ATCC 25291] gi|336459816|gb|EGO38730.1| chromosomal replication initiator protein DnaA [Mycobacterium avium subsp. paratuberculosis S397] Length=509 Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/511 (88%), Positives = 465/511 (91%), Gaps = 6/511 (1%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDPGS FTTVWNAVVSELNG+P D G ++ L PLTPQQRAWLNLV+PLTIVEGF Sbjct 1 MADDPGSSFTTVWNAVVSELNGEPVADGGAANRTTLVTPLTPQQRAWLNLVRPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSE--- 117 ALLSVPSSFVQNEIERHLRAPITDALSRRLG QIQLGVRIAPP D+ +D +PP+E Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPP-DDVEDALIPPAEPFP 119 Query 118 -NPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDT 176 A S D D + +++ D Q WP+YFTERPH D A A TSLNRRYTFDT Sbjct 120 DTDAALSADDGADGEPVENGEPV-TDTQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFDT 178 Query 177 FVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKY 236 FVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKY Sbjct 179 FVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKY 238 Query 237 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA 296 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA Sbjct 239 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA 298 Query 297 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDD 356 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDD Sbjct 299 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDD 358 Query 357 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATI 416 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLIADA+TMQISAATI Sbjct 359 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAATI 418 Query 417 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA 476 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA Sbjct 419 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA 478 Query 477 QRKILSEMAERREVFDHVKELTTRIRQRSKR 507 QRKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 479 QRKILSEMAERREVFDHVKELTTRIRQRSKR 509 >gi|41406099|ref|NP_958935.1| chromosomal replication initiation protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431486|sp|Q9L7L7.1|DNAA_MYCPA RecName: Full=Chromosomal replication initiator protein DnaA gi|6969271|gb|AAF33692.1| putative dnaA [Mycobacterium avium subsp. paratuberculosis] gi|41394447|gb|AAS02318.1| DnaA [Mycobacterium avium subsp. paratuberculosis K-10] Length=509 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/511 (88%), Positives = 465/511 (91%), Gaps = 6/511 (1%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDPGS FTTVWNAVVSELNG+P D G ++ L PLTPQQRAWLNLV+PLTIVEGF Sbjct 1 MADDPGSSFTTVWNAVVSELNGEPVADGGAANRTTLVTPLTPQQRAWLNLVRPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSE--- 117 ALLSVPSSFVQNEIERHLRAPITDALSRRLG QIQLGVRIAPP D+ +D +PP+E Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPP-DDVEDAPIPPAEPFP 119 Query 118 -NPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDT 176 A S D D + +++ D Q WP+YFTERPH D A A TSLNRRYTFDT Sbjct 120 DTDAALSADDGADGEPVENGEPV-TDTQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFDT 178 Query 177 FVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKY 236 FVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKY Sbjct 179 FVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKY 238 Query 237 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA 296 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA Sbjct 239 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA 298 Query 297 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDD 356 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDD Sbjct 299 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDD 358 Query 357 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATI 416 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLIADA+TMQISAATI Sbjct 359 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAATI 418 Query 417 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA 476 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA Sbjct 419 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA 478 Query 477 QRKILSEMAERREVFDHVKELTTRIRQRSKR 507 QRKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 479 QRKILSEMAERREVFDHVKELTTRIRQRSKR 509 >gi|296167143|ref|ZP_06849550.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897465|gb|EFG77064.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=518 Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/509 (90%), Positives = 462/509 (91%), Gaps = 2/509 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 LTDDPGSGFTTVWNAVVSELNG+P D P++ L APLTPQQRAWLNLVQPLTIVEGF Sbjct 10 LTDDPGSGFTTVWNAVVSELNGEPTPDGAPANRTTLVAPLTPQQRAWLNLVQPLTIVEGF 69 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDT--TVPPSEN 118 ALLSVPSSFVQNEIERHLRAPITDALSRRLG QIQLGVRIAPP D D P Sbjct 70 ALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPDDDADDVVLGQAEPFAQ 129 Query 119 PATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFV 178 + PD D DE D++ A Q W +YF ERPH D A AG TSLNRRYTFDTFV Sbjct 130 GDSAFPDDAGDADETDENGEAADSAQQGWTNYFAERPHPADPAVAGGTSLNRRYTFDTFV 189 Query 179 IGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS 238 IGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS Sbjct 190 IGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS 249 Query 239 TEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANK 298 TEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANK Sbjct 250 TEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANK 309 Query 299 QIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVL 358 QIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVL Sbjct 310 QIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVL 369 Query 359 ELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMA 418 ELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADA+TMQISAATIMA Sbjct 370 ELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADASTMQISAATIMA 429 Query 419 ATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQR 478 ATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQR Sbjct 430 ATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQR 489 Query 479 KILSEMAERREVFDHVKELTTRIRQRSKR 507 KILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 490 KILSEMAERREVFDHVKELTTRIRQRSKR 518 >gi|342862353|ref|ZP_08718994.1| chromosomal replication initiation protein [Mycobacterium colombiense CECT 3035] gi|342130210|gb|EGT83538.1| chromosomal replication initiation protein [Mycobacterium colombiense CECT 3035] Length=511 Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/512 (88%), Positives = 467/512 (92%), Gaps = 6/512 (1%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGS FTTVWNAVVSELNG+ D ++ L PLTPQQRAWLNLV+PLTIVEGF Sbjct 1 MTDDPGSSFTTVWNAVVSELNGETTPDGLAANRTTLVTPLTPQQRAWLNLVRPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSE--- 117 ALLSVPSSFVQNEIERHLRAPITDALSRRLG QIQLGVRIAPP D+ +D +PP+E Sbjct 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPP-DDVEDALIPPAEPFP 119 Query 118 --NPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFD 175 +P+ + + +E +++ DNQ WP+YFTERPH D A A TSLNRRYTFD Sbjct 120 GSDPSFPADAAAVETEEAFENSETVSDNQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFD 179 Query 176 TFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVK 235 TFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVK Sbjct 180 TFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVK 239 Query 236 YVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHN 295 YVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHN Sbjct 240 YVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHN 299 Query 296 ANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPD 355 ANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPD Sbjct 300 ANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPD 359 Query 356 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAAT 415 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLIADA+TMQISAAT Sbjct 360 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAAT 419 Query 416 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMY 475 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMY Sbjct 420 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMY 479 Query 476 AQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 AQRKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 480 AQRKILSEMAERREVFDHVKELTTRIRQRSKR 511 >gi|6226596|sp|P49990.2|DNAA_MYCAV RecName: Full=Chromosomal replication initiator protein DnaA gi|3953448|gb|AAC83390.1| DnaA [Mycobacterium avium] Length=508 Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/510 (86%), Positives = 453/510 (89%), Gaps = 5/510 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDPGS FTTVWNAVVSELNG+P D P+ L PLTPQQRAWLNLV+PLTIVEGF Sbjct 1 MADDPGSSFTTVWNAVVSELNGEPVADAEPNR-TTLVTPLTPQQRAWLNLVRPLTIVEGF 59 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLRAPITDALSRRLG QIQLGVRIAPP D+ +D +P +E Sbjct 60 ALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPP-DDVEDALIPSAEPFP 118 Query 121 TTSPDTTTDNDEIDDSAAARG---DNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTF 177 T D + ++ RG + Q W +YFTERPH D A A TSLNRRYTFDTF Sbjct 119 DTDADLSARRRTDSRASGERGAVTNTQPGWTNYFTERPHAIDPAVAAGTSLNRRYTFDTF 178 Query 178 VIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYV 237 VIGASNRFAHAA LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQR FPGMRVKYV Sbjct 179 VIGASNRFAHAAVLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRFFPGMRVKYV 238 Query 238 STEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN 297 STEEFTNDFINSLRDDRKV FKR+ RDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN Sbjct 239 STEEFTNDFINSLRDDRKVPFKRTIRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNAN 298 Query 298 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV 357 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV Sbjct 299 KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDV 358 Query 358 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIM 417 LELIASSIERNIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLIADA+TMQISAATIM Sbjct 359 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAATIM 418 Query 418 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQ 477 AATAEYFDTTV ELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTT+MY Q Sbjct 419 AATAEYFDTTVVELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTLMYGQ 478 Query 478 RKILSEMAERREVFDHVKELTTRIRQRSKR 507 RKILSEMAERR FDHVKELTTRIRQRSKR Sbjct 479 RKILSEMAERRGGFDHVKELTTRIRQRSKR 508 >gi|240172091|ref|ZP_04750750.1| chromosomal replication initiation protein [Mycobacterium kansasii ATCC 12478] Length=514 Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/514 (87%), Positives = 458/514 (90%), Gaps = 7/514 (1%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TDDPGSGF +VWNAVVSELNG+ D + L+ PLTPQQRAWLNLVQPLTIVEGF Sbjct 1 MTDDPGSGFASVWNAVVSELNGELNADGIAHTGTTLTTPLTPQQRAWLNLVQPLTIVEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPA-TDEADDTTVPPS--- 116 ALLSVPSSFVQNEIERHLR PITDALSRRLGHQIQLGVRIAPP T +AD+ P Sbjct 61 ALLSVPSSFVQNEIERHLRTPITDALSRRLGHQIQLGVRIAPPPPTTDADEGAQPADDSG 120 Query 117 -ENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATA--GVTSLNRRYT 173 E TSP+T + DD+ G + WP+YFT+RP T A G TSLNRRYT Sbjct 121 LEMSRETSPETPEAPGDTDDADETAGGPRPGWPTYFTKRPSGTADTVAATGGTSLNRRYT 180 Query 174 FDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMR 233 FDTFVIGASNRFAHAA LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNY QRLFPGMR Sbjct 181 FDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYTQRLFPGMR 240 Query 234 VKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTL 293 VKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTL Sbjct 241 VKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTL 300 Query 294 HNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAV 353 HNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAV Sbjct 301 HNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAV 360 Query 354 PDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISA 413 PDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADA MQISA Sbjct 361 PDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADATAMQISA 420 Query 414 ATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTV 473 ATIMAATAEYFDTTVEELRGPGKTR+LAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTV Sbjct 421 ATIMAATAEYFDTTVEELRGPGKTRSLAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTV 480 Query 474 MYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 MYAQRKILSEMAERREVFDHVKELTTRIRQRSKR Sbjct 481 MYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 514 >gi|886325|gb|AAB53141.1| chromosomal replication initiator protein [Mycobacterium leprae] Length=521 Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/507 (88%), Positives = 458/507 (91%), Gaps = 5/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 L DD GFTTVWNAVVSELNG+ DD ++D+ L PLTPQQRAWLNLVQPLTI+EGF Sbjct 20 LADDLSLGFTTVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQRAWLNLVQPLTIIEGF 79 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLR PITDALSRRLG QIQLGVRIAPP+TD DD + S Sbjct 80 ALLSVPSSFVQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNS---SSADV 136 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 + D TD DE + G+ Q P+YFTERPH+T+S G TSLNRRYTF+TFVIG Sbjct 137 LLTDDCGTDTDE-NYGEPLTGEYQ-GLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIG 194 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAH AALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 195 ASNRFAHRAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 254 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 255 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 314 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVP DVLEL Sbjct 315 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPGDVLEL 374 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKT IDKALAEIVLRDLIADA+TMQISAATIM AT Sbjct 375 IASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTAT 434 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTT+EELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 435 AEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 494 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 495 LSEMAERREVFDHVKELTTRIRQRSKR 521 >gi|221229344|ref|YP_002502760.1| chromosomal replication initiation protein [Mycobacterium leprae Br4923] gi|219932451|emb|CAR70094.1| putative chromosomal replication initiator protein [Mycobacterium leprae Br4923] Length=521 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/507 (88%), Positives = 460/507 (91%), Gaps = 5/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 L DD G GFTTVWNAVVSELNG+ DD ++D+ L PLTPQQRAWLNLVQPLTI+EGF Sbjct 20 LADDLGLGFTTVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQRAWLNLVQPLTIIEGF 79 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLR PITDALSRRLG QIQLGVRIAPP+TD DD + S Sbjct 80 ALLSVPSSFVQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNS---SSADV 136 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 + D TD DE + G+ Q P+YFTERPH+T+S G TSLNRRYTF+TFVIG Sbjct 137 LLTDDCGTDTDE-NYGEPLTGEYQ-GLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIG 194 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 195 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 254 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 255 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 314 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVP DVLEL Sbjct 315 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPGDVLEL 374 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKT IDKALAEIVLRDLIADA+TMQISAATIM AT Sbjct 375 IASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTAT 434 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTT+EELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 435 AEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 494 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 495 LSEMAERREVFDHVKELTTRIRQRSKR 521 >gi|15826866|ref|NP_301129.1| chromosomal replication initiation protein [Mycobacterium leprae TN] gi|13092413|emb|CAC29509.1| putative chromosomal replication initiator protein [Mycobacterium leprae] Length=521 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/507 (88%), Positives = 459/507 (91%), Gaps = 5/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 L DD GFTTVWNAVVSELNG+ DD ++D+ L PLTPQQRAWLNLVQPLTI+EGF Sbjct 20 LADDLSLGFTTVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQRAWLNLVQPLTIIEGF 79 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLR PITDALSRRLG QIQLGVRIAPP+TD DD + S Sbjct 80 ALLSVPSSFVQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNS---SSADV 136 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 + D TD DE + G+ Q P+YFTERPH+T+S G TSLNRRYTF+TFVIG Sbjct 137 LLTDDCGTDTDE-NYGEPLTGEYQ-GLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIG 194 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 195 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 254 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 255 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 314 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVP DVLEL Sbjct 315 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPGDVLEL 374 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKT IDKALAEIVLRDLIADA+TMQISAATIM AT Sbjct 375 IASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTAT 434 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTT+EELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 435 AEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 494 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 495 LSEMAERREVFDHVKELTTRIRQRSKR 521 >gi|14195657|sp|P46388.3|DNAA_MYCLE RecName: Full=Chromosomal replication initiator protein DnaA Length=502 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/507 (88%), Positives = 459/507 (91%), Gaps = 5/507 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DD GFTTVWNAVVSELNG+ DD ++D+ L PLTPQQRAWLNLVQPLTI+EGF Sbjct 1 MADDLSLGFTTVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQRAWLNLVQPLTIIEGF 60 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVPSSFVQNEIERHLR PITDALSRRLG QIQLGVRIAPP+TD DD + S Sbjct 61 ALLSVPSSFVQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNS---SSADV 117 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 + D TD DE + G+ Q P+YFTERPH+T+S G TSLNRRYTF+TFVIG Sbjct 118 LLTDDCGTDTDE-NYGEPLTGEYQ-GLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIG 175 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 176 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 235 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 236 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 295 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVP DVLEL Sbjct 296 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPGDVLEL 355 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKT IDKALAEIVLRDLIADA+TMQISAATIM AT Sbjct 356 IASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTAT 415 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYFDTT+EELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI Sbjct 416 AEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 475 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 LSEMAERREVFDHVKELTTRIRQRSKR Sbjct 476 LSEMAERREVFDHVKELTTRIRQRSKR 502 >gi|118466558|ref|YP_879304.1| chromosomal replication initiation protein [Mycobacterium avium 104] gi|118167845|gb|ABK68742.1| chromosomal replication initiator protein DnaA [Mycobacterium avium 104] Length=498 Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/500 (88%), Positives = 456/500 (92%), Gaps = 6/500 (1%) Query 12 VWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQ 71 +WNAVVSELNG+P D G ++ L PLTPQQRAWLNLV+PLTIVEGFALLSVPSSFVQ Sbjct 1 MWNAVVSELNGEPVADGGAANRTTLVTPLTPQQRAWLNLVRPLTIVEGFALLSVPSSFVQ 60 Query 72 NEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSE----NPATTSPDTT 127 NEIERHLRAPITDALSRRLG QIQLGVRIAPP D+ +D +PP+E A S D Sbjct 61 NEIERHLRAPITDALSRRLGQQIQLGVRIAPPP-DDVEDALIPPAEPFPDTDAALSADDG 119 Query 128 TDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAH 187 D + +++ D Q WP+YFTERPH D A A TSLNRRYTFDTFVIGASNRFAH Sbjct 120 ADGEPVENGEPV-TDTQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFDTFVIGASNRFAH 178 Query 188 AAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI 247 AAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI Sbjct 179 AAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI 238 Query 248 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRP 307 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRP Sbjct 239 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRP 298 Query 308 PKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIER 367 PKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIER Sbjct 299 PKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIER 358 Query 368 NIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTT 427 NIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLIADA+TMQISAATIMAATAEYFDTT Sbjct 359 NIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAATIMAATAEYFDTT 418 Query 428 VEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAER 487 VEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAER Sbjct 419 VEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAER 478 Query 488 REVFDHVKELTTRIRQRSKR 507 REVFDHVKELTTRIRQRSKR Sbjct 479 REVFDHVKELTTRIRQRSKR 498 >gi|108796982|ref|YP_637179.1| chromosomal replication initiation protein [Mycobacterium sp. MCS] gi|119866066|ref|YP_936018.1| chromosomal replication initiation protein [Mycobacterium sp. KMS] gi|126432614|ref|YP_001068305.1| chromosomal replication initiation protein [Mycobacterium sp. JLS] 6 more sequence titles Length=495 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/507 (79%), Positives = 428/507 (85%), Gaps = 12/507 (2%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +T DP F VWN VV+ELNGDP GP + LTPQQRAWL LV+PL I EGF Sbjct 1 MTADPDPPFVAVWNTVVAELNGDPAAT-GPRNGDGALPTLTPQQRAWLKLVKPLVITEGF 59 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVP+ FVQNEIERHLR PI ALSR LG +++LGVRIA P+ ++ Sbjct 60 ALLSVPTPFVQNEIERHLREPIITALSRHLGQRVELGVRIATPSPEDD-----------D 108 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 D DE+D+ AR + +WP YF+ P + SLNRRYTFDTFVIG Sbjct 109 PPPSPVIADIDEVDEDTEARVSAEETWPRYFSRPPETPAAEDPNAVSLNRRYTFDTFVIG 168 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAA LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 169 ASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 228 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDRK +FKRSYRD+DVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI Sbjct 229 EFTNDFINSLRDDRKASFKRSYRDIDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 288 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQM+RL VPDDVLEL Sbjct 289 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVLEL 348 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IASSIERNIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLI+DA+TMQIS A IMAAT Sbjct 349 IASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLISDASTMQISTAAIMAAT 408 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYF+TT+EELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++KI Sbjct 409 AEYFETTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKKI 468 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 EMAERREVFDHVKELTTRIRQR+KR Sbjct 469 RGEMAERREVFDHVKELTTRIRQRAKR 495 >gi|145221421|ref|YP_001132099.1| chromosomal replication initiation protein [Mycobacterium gilvum PYR-GCK] gi|145213907|gb|ABP43311.1| chromosomal replication initiator protein DnaA [Mycobacterium gilvum PYR-GCK] Length=492 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/507 (79%), Positives = 432/507 (86%), Gaps = 17/507 (3%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 LT DP F +W+ VV+ELNG +G LTPQQRAWL LV+PL I EGF Sbjct 3 LTTDPDPPFVAIWDNVVTELNGTGGTQNGS---------LTPQQRAWLKLVRPLVITEGF 53 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVP+ FVQNEIERHLR PI ALSR+LG +++LGVRIA PA D+ +D A Sbjct 54 ALLSVPTPFVQNEIERHLREPIVAALSRQLGQRVELGVRIADPAADDVND-------GAA 106 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 T+ D DE+DD AAR + SWPSYF + + + V +LNRRYTF+TFVIG Sbjct 107 VTAASVPADTDEVDDDLAARASAEESWPSYFNRAKTSAEDDSLSV-NLNRRYTFETFVIG 165 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAA+LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 166 ASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 225 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDR+ +FKR+YRD+DVLLVDDIQFIEGK+GIQEEFFHTFNTLHNANKQI Sbjct 226 EFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTFNTLHNANKQI 285 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQM+RL VPDDVLEL Sbjct 286 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVLEL 345 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IAS IERNIRELEGALIRVTAFASLNKT IDK+LAEIVLRDLI+D TMQIS A IMAAT Sbjct 346 IASRIERNIRELEGALIRVTAFASLNKTSIDKSLAEIVLRDLISDPGTMQISTAAIMAAT 405 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYF+T+V+ELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++KI Sbjct 406 AEYFETSVDELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKKI 465 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 +EMAERREVFDHVKELTTRIRQRSKR Sbjct 466 RAEMAERREVFDHVKELTTRIRQRSKR 492 >gi|169627109|ref|YP_001700758.1| chromosomal replication initiation protein [Mycobacterium abscessus ATCC 19977] gi|226735827|sp|B1MDH6.1|DNAA_MYCA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|169239076|emb|CAM60104.1| Chromosomal replication initiator protein DnaA [Mycobacterium abscessus] Length=491 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/508 (79%), Positives = 430/508 (85%), Gaps = 20/508 (3%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSA--PLTPQQRAWLNLVQPLTIVE 58 +TD+ S FT VWN VV+ELNGD + LS+ PLTPQQRAWL LV+PLT+ E Sbjct 1 MTDELNSQFTAVWNTVVAELNGD--------DNQYLSSFPPLTPQQRAWLTLVKPLTMAE 52 Query 59 GFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSEN 118 GFALLSVPSSFVQNEIERHLR PI +ALSRRLG ++LGVRIA PA P E+ Sbjct 53 GFALLSVPSSFVQNEIERHLRGPIVEALSRRLGENVELGVRIAAPA----------PGED 102 Query 119 PATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFV 178 + DE+D++ A SWPSYF RP D A TSLN RYTF++FV Sbjct 103 SEVAGAAPEVELDEVDETTEALASAHESWPSYFINRPGGADKAETPDTSLNARYTFESFV 162 Query 179 IGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS 238 IGASNRF+HAAA+A++EAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS Sbjct 163 IGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS 222 Query 239 TEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANK 298 TEEFTNDFINSLRDDR+VAFKRSYRD+DVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANK Sbjct 223 TEEFTNDFINSLRDDRRVAFKRSYRDIDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANK 282 Query 299 QIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVL 358 QIVISSDRPPK LATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQM+RL VPDDVL Sbjct 283 QIVISSDRPPKGLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVL 342 Query 359 ELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMA 418 ELIAS IERNIRELEGALIRVTAFASLNK+PI+ +LAEIVLRDLI DAN +QISAATIMA Sbjct 343 ELIASRIERNIRELEGALIRVTAFASLNKSPIELSLAEIVLRDLIPDANAIQISAATIMA 402 Query 419 ATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQR 478 TAEYFDTTVEELRGPGKTRALAQ+RQIAMYLCRELTDLSLPKIGQ FGRDHTTVMYA + Sbjct 403 VTAEYFDTTVEELRGPGKTRALAQARQIAMYLCRELTDLSLPKIGQTFGRDHTTVMYADK 462 Query 479 KILSEMAERREVFDHVKELTTRIRQRSK 506 K+ EMA+RREVFDHVKELT RIRQRS+ Sbjct 463 KVRGEMAQRREVFDHVKELTARIRQRSR 490 >gi|315441697|ref|YP_004074576.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] gi|315260000|gb|ADT96741.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] Length=492 Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/507 (79%), Positives = 432/507 (86%), Gaps = 17/507 (3%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 LT DP F +W+ VV+ELNG +G LTPQQRAWL LV+PL I EGF Sbjct 3 LTTDPDPPFVAIWDNVVTELNGTGGTQNGS---------LTPQQRAWLKLVRPLVITEGF 53 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVP+ FVQNEIERHLR PI ALSR+LG +++LGVRIA PA D+ +D A Sbjct 54 ALLSVPTPFVQNEIERHLREPIVAALSRQLGQRVELGVRIADPAADDVND-------GAA 106 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 T+ D DE+DD AAR + SWPSYF + + + V +LNRRYTF+TFVIG Sbjct 107 VTASPVPADTDEVDDDLAARASAEESWPSYFNRAKTSAEDDSLSV-NLNRRYTFETFVIG 165 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAA+LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 166 ASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 225 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDR+ +FKR+YRD+DVLLVDDIQFIEGK+GIQEEFFHTFNTLHNANKQI Sbjct 226 EFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTFNTLHNANKQI 285 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQM+RL VPDDVLEL Sbjct 286 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVLEL 345 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IAS IERNIRELEGALIRVTAFASLNKT IDK+LAEIVLRDLI+D TMQIS A IMAAT Sbjct 346 IASRIERNIRELEGALIRVTAFASLNKTSIDKSLAEIVLRDLISDPGTMQISTAAIMAAT 405 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYF+T+V+ELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++KI Sbjct 406 AEYFETSVDELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKKI 465 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 +EMAERREVFDHVKELTTRIRQRSKR Sbjct 466 RAEMAERREVFDHVKELTTRIRQRSKR 492 >gi|118474040|ref|YP_891139.1| chromosomal replication initiation protein [Mycobacterium smegmatis str. MC2 155] gi|152013510|sp|A0R7K1.1|DNAA_MYCS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|152013511|sp|P0C557.1|DNAA_MYCSM RecName: Full=Chromosomal replication initiator protein DnaA gi|1321893|emb|CAA63248.1| dnaA [Mycobacterium smegmatis] gi|118175327|gb|ABK76223.1| chromosomal replication initiator protein DnaA [Mycobacterium smegmatis str. MC2 155] Length=504 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/508 (81%), Positives = 440/508 (87%), Gaps = 5/508 (0%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +T DP F VWN+VV+ELNGD V+ D +L LTPQQRAWL LV+PL I EGF Sbjct 1 MTADPDPPFVAVWNSVVAELNGD--VNGDRQGDPSLPV-LTPQQRAWLKLVKPLVIAEGF 57 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVP+ FVQNEIERHLR PI ALSR+LG +++LGVRIA P TDE +D +++PA Sbjct 58 ALLSVPTPFVQNEIERHLREPIVTALSRKLGQRVELGVRIATP-TDEPEDAPDSFADSPA 116 Query 121 TTS-PDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVI 179 S P D DEIDD AR + Q SWP YF+ +T S + +LNRRYTFDTFVI Sbjct 117 PASVPAGPADADEIDDDRDARVNAQESWPKYFSRPEPDTSSDDSNAVNLNRRYTFDTFVI 176 Query 180 GASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVST 239 GASNRFAHAA LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVST Sbjct 177 GASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVST 236 Query 240 EEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQ 299 EEFTNDFINSLRDDRK +FKRSYRD+D+LLVDDIQFIEGKEGIQEEFFHTFNTLHN+NKQ Sbjct 237 EEFTNDFINSLRDDRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTFNTLHNSNKQ 296 Query 300 IVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLE 359 IVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQM+RL VPDDVLE Sbjct 297 IVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVLE 356 Query 360 LIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAA 419 LIASSIERNIRELEGALIRVTAFASLNKT ID++LAE+VLRDLIADA TMQIS A IMA Sbjct 357 LIASSIERNIRELEGALIRVTAFASLNKTRIDRSLAEVVLRDLIADATTMQISTAAIMAV 416 Query 420 TAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRK 479 TAEYF+TTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++K Sbjct 417 TAEYFETTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKK 476 Query 480 ILSEMAERREVFDHVKELTTRIRQRSKR 507 I EMAERREVFDHVKELTTRIRQR+KR Sbjct 477 IRGEMAERREVFDHVKELTTRIRQRAKR 504 >gi|120401029|ref|YP_950858.1| chromosomal replication initiation protein [Mycobacterium vanbaalenii PYR-1] gi|166214685|sp|A1T102.1|DNAA_MYCVP RecName: Full=Chromosomal replication initiator protein DnaA gi|119953847|gb|ABM10852.1| chromosomal replication initiator protein DnaA [Mycobacterium vanbaalenii PYR-1] Length=494 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/507 (79%), Positives = 435/507 (86%), Gaps = 13/507 (2%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +T DP F ++W+ VV+ELNG +V +G LTPQQRAWL LV+PL I EGF Sbjct 1 MTTDPDPPFVSIWDNVVTELNGAGEVGNGS---------LTPQQRAWLKLVKPLVITEGF 51 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPA 120 ALLSVP+ FVQNEIERHLR PI ALSR+LG +++LGVRIA P +DE+D S Sbjct 52 ALLSVPTPFVQNEIERHLREPIVAALSRQLGQRVELGVRIADPVSDESDSG----SVASP 107 Query 121 TTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIG 180 D+D +DD AAR + SWPSYFT R + A +LNRRYTFDTFVIG Sbjct 108 APVAAADPDDDVVDDDLAARASAEESWPSYFTNRANRAAEDDATSVNLNRRYTFDTFVIG 167 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAA+LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE Sbjct 168 ASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 227 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDR+ +FKR+YRD+DVLLVDDIQFIEGK+GIQEEFFHTFNTLHNANKQI Sbjct 228 EFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTFNTLHNANKQI 287 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQM+RL VP DVLEL Sbjct 288 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPGDVLEL 347 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IAS IERNIRELEGALIRVTAFASLNKTPIDK+LAEIVLRDLI+D++TMQIS A IMAAT Sbjct 348 IASRIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLISDSSTMQISTAAIMAAT 407 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYF+T+VEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++KI Sbjct 408 AEYFETSVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKKI 467 Query 481 LSEMAERREVFDHVKELTTRIRQRSKR 507 +EMAERREVFDHVKELTTRIRQR+KR Sbjct 468 RAEMAERREVFDHVKELTTRIRQRAKR 494 >gi|333988641|ref|YP_004521255.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. JDM601] gi|333484609|gb|AEF34001.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. JDM601] Length=491 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/508 (83%), Positives = 445/508 (88%), Gaps = 18/508 (3%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPL-TPQQRAWLNLVQPLTIVEG 59 +TDDPG+ F T+W+ VV+ELNG+ DG +APL TPQQ+AWLNLV PL IVEG Sbjct 1 MTDDPGTAFLTLWDEVVAELNGEAGAPDG-------AAPLLTPQQKAWLNLVHPLAIVEG 53 Query 60 FALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENP 119 FALL+VPSSFVQNEIERHLR IT ALSRRLGH I+LGVRIAP ADDTT S P Sbjct 54 FALLAVPSSFVQNEIERHLRTQITAALSRRLGHDIELGVRIAPAP---ADDTTA--SSGP 108 Query 120 ATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVI 179 +P +D+DE DD+ ++ WP+YFTERP + DSATA SLNRRYTFDTFVI Sbjct 109 DGAAPSRVSDDDEDDDTPDV----EYDWPNYFTERPSD-DSATADGASLNRRYTFDTFVI 163 Query 180 GASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVST 239 G SNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNY QRLFPGMRVKYVST Sbjct 164 GTSNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYTQRLFPGMRVKYVST 223 Query 240 EEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQ 299 EEFTNDFINSLRDDRKVAFKRSYRD+DVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQ Sbjct 224 EEFTNDFINSLRDDRKVAFKRSYRDIDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQ 283 Query 300 IVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLE 359 IVI+SDR PKQLATLEDRLRTRFEWGLITDVQPP+LETRIAILRKKAQMERL VP DVLE Sbjct 284 IVITSDRAPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRKKAQMERLDVPGDVLE 343 Query 360 LIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAA 419 LIA+SIERNIRELEGALIRVTAFASLNKTPID+ALAEIVLRDLIADA+TMQISAA IMA Sbjct 344 LIATSIERNIRELEGALIRVTAFASLNKTPIDRALAEIVLRDLIADASTMQISAAIIMAV 403 Query 420 TAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRK 479 AEYFDT++EELRGPGKTR LAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA+RK Sbjct 404 IAEYFDTSIEELRGPGKTRPLAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAERK 463 Query 480 ILSEMAERREVFDHVKELTTRIRQRSKR 507 I EMAERREVFD VKELTTRIRQR+KR Sbjct 464 IRGEMAERREVFDQVKELTTRIRQRAKR 491 >gi|262200047|ref|YP_003271255.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] gi|262083394|gb|ACY19362.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] Length=509 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/517 (69%), Positives = 410/517 (80%), Gaps = 33/517 (6%) Query 9 FTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSS 68 F VW VV+ELN D D PLT QQ+AWL+LV+PLT+ EGFALL+VP+ Sbjct 8 FGEVWQQVVAELNDDEAARD--------HEPLTRQQKAWLSLVRPLTLAEGFALLTVPTP 59 Query 69 FVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDE-----------ADD------- 110 VQ +IER+LR I ALS+ LG + LGVRIA P +E ADD Sbjct 60 LVQEQIERNLRDTIRSALSKHLGQPVDLGVRIATPPAEEPVAEPIPAVLPADDGLSAALT 119 Query 111 TTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNR 170 T VP PA +P +D ++ + W +YF ERP T + +LN Sbjct 120 TGVP---TPAPGAP--FRGPGPVDPASERPRPDTGDWTAYFAERP--TTAPAVPSANLNP 172 Query 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 230 +YTFDTFVIGASNRFAHA+A+A++EAPARAYNPLFIWGESGLGKTHLLHAAG+YAQRLFP Sbjct 173 KYTFDTFVIGASNRFAHASAVAVSEAPARAYNPLFIWGESGLGKTHLLHAAGHYAQRLFP 232 Query 231 GMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTF 290 GMRVKYVSTEEFTNDFINSLRDDR+VAFKR YRDVDVLLVDDIQF+ GKEGIQEEFFHTF Sbjct 233 GMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDVDVLLVDDIQFLMGKEGIQEEFFHTF 292 Query 291 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMER 350 NTLHNA+KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPP+LETRIAILRKKAQM+ Sbjct 293 NTLHNASKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRKKAQMDN 352 Query 351 LAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQ 410 +AVPDDVLELIAS IERNIRELEGALIRVTAFASLN +DK+LA++VL+ L+ ++ T++ Sbjct 353 IAVPDDVLELIASKIERNIRELEGALIRVTAFASLNNAELDKSLADVVLQALLPNSGTLE 412 Query 411 ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDH 470 ISAA+I+A TAEYFD +VEELRGPGKTR++AQ+RQI+MYLCRELTDLSLPKIG+ F RDH Sbjct 413 ISAASILAITAEYFDISVEELRGPGKTRSIAQARQISMYLCRELTDLSLPKIGETFDRDH 472 Query 471 TTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 TTVMYA+RKI EMAERR+V+DHV+ELT RI+QR+ R Sbjct 473 TTVMYAERKIRKEMAERRKVYDHVQELTARIKQRAVR 509 >gi|343928735|ref|ZP_08768180.1| chromosomal replication initiator protein DnaA [Gordonia alkanivorans NBRC 16433] gi|343761484|dbj|GAA15106.1| chromosomal replication initiator protein DnaA [Gordonia alkanivorans NBRC 16433] Length=510 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/515 (68%), Positives = 404/515 (79%), Gaps = 32/515 (6%) Query 9 FTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSS 68 F VW VV+ELN D D PLT QQ+AWL+LV+PLT+ EGFALL+VP++ Sbjct 8 FGEVWQQVVAELNDDEAARD--------HEPLTRQQKAWLSLVRPLTLTEGFALLTVPTA 59 Query 69 FVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDE------------------ADD 110 VQ +IER+LR I LSR L + LGVRI P DE D Sbjct 60 LVQEQIERNLRETIRSVLSRHLNEPVDLGVRIQTPRNDEPMPEPAAPEPRVVNGAAPVDY 119 Query 111 TTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNR 170 + VP + A D+ GD W SYF ERP +T S + +LN Sbjct 120 SAVPGAAIGAGFPATPGAGPAPGGDTGRPSGD----WASYFAERPTSTPSPSGA--NLNP 173 Query 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 230 +YTFDTFVIGASNRFAHA+A+A++EAPARAYNPLFIWGESGLGKTHLLHAAG+YAQRLFP Sbjct 174 KYTFDTFVIGASNRFAHASAVAVSEAPARAYNPLFIWGESGLGKTHLLHAAGHYAQRLFP 233 Query 231 GMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTF 290 GMRVKYVSTEEFTNDFINSLRDDR+VAFKR YRDVDVLLVDDIQF+ GKEGIQEEFFHTF Sbjct 234 GMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDVDVLLVDDIQFLVGKEGIQEEFFHTF 293 Query 291 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMER 350 NTLHNA+KQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPP+LETRIAILRKKAQM+ Sbjct 294 NTLHNASKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRKKAQMDN 353 Query 351 LAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQ 410 +AVPDDVLELIAS IERNIRELEGALIRVTAFASLN +DK+LA++VL+ L+ ++ T++ Sbjct 354 IAVPDDVLELIASKIERNIRELEGALIRVTAFASLNDAALDKSLADVVLQALLPNSGTLE 413 Query 411 ISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDH 470 +SAA+I+A TAEYFD +VEELRGPGKTR++AQ+RQI+MYLCRELTDLSLPKIG+ F RDH Sbjct 414 VSAASILAITAEYFDISVEELRGPGKTRSIAQARQISMYLCRELTDLSLPKIGETFDRDH 473 Query 471 TTVMYAQRKILSEMAERREVFDHVKELTTRIRQRS 505 TTVMYA+RKI EMAERR+V+DHV+ELT RI+QR+ Sbjct 474 TTVMYAERKIRKEMAERRKVYDHVQELTARIKQRA 508 >gi|111020655|ref|YP_703627.1| chromosomal replication initiation protein [Rhodococcus jostii RHA1] gi|123144805|sp|Q0SAG7.1|DNAA_RHOSR RecName: Full=Chromosomal replication initiator protein DnaA gi|110820185|gb|ABG95469.1| DNA-directed DNA replication initiator protein [Rhodococcus jostii RHA1] Length=528 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/539 (68%), Positives = 414/539 (77%), Gaps = 43/539 (7%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDP + +W VV++L D D P PLT Q+AWL LV+PLT+ +GF Sbjct 1 MNDDP-NALARIWIDVVADLTSDSPGGDLP--------PLTRGQKAWLALVKPLTLAQGF 51 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQ-LGVRIAPPATDEADDTTVPPSEN- 118 ALLSVPS F Q IER LR PI AL R LG Q++ LGVRIA P DE + + PPS + Sbjct 52 ALLSVPSPFAQEAIERDLREPILHALGRHLGEQVEGLGVRIAAPVDDEPE--SDPPSRDH 109 Query 119 --------------PATTSPDT----------------TTDNDEIDDSAAARGDNQHSWP 148 P+ TS + TTD +E+DD A SWP Sbjct 110 RPEPEPLHTPRHLEPSVTSSGSFRRRRFGSGEDQPYSDTTDFEEVDDDREALASVHESWP 169 Query 149 SYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWG 208 SYFT+ P + G SLN +YTFDTFVIG+SNRFAHAAA+AIAEAPARAYNPLF+WG Sbjct 170 SYFTKPPSGPAPSATGGNSLNAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFVWG 229 Query 209 ESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVL 268 SGLGKTHLLHAAG+YAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKR YR+ DVL Sbjct 230 ASGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVL 289 Query 269 LVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLIT 328 LVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLE+RLRTRFEWGLIT Sbjct 290 LVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLIT 349 Query 329 DVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKT 388 DVQPPELETRIAIL KKA+M+RL VPDDVLELIAS IERNIRELEGALIRVTAFASLN+ Sbjct 350 DVQPPELETRIAILSKKARMDRLEVPDDVLELIASRIERNIRELEGALIRVTAFASLNRQ 409 Query 389 PIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAM 448 P+D LAE+VLRDL+ D+++++I+AATIMA TAEYF+ ++++L GPGK R LA +RQI+M Sbjct 410 PLDLTLAEVVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKARPLASARQISM 469 Query 449 YLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 YLCRELTDLSLPKIGQ FGRDHTTVMYA +KI EM ERR+V+D V+ELT RI+QRSKR Sbjct 470 YLCRELTDLSLPKIGQTFGRDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQRSKR 528 >gi|226362895|ref|YP_002780675.1| chromosomal replication initiation protein [Rhodococcus opacus B4] gi|254777911|sp|C1B7S7.1|DNAA_RHOOB RecName: Full=Chromosomal replication initiator protein DnaA gi|226241382|dbj|BAH51730.1| chromosomal replication initiator protein DnaA [Rhodococcus opacus B4] Length=528 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/537 (68%), Positives = 411/537 (77%), Gaps = 39/537 (7%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDP + +W VV++L D D P PLT Q+AWL LV+PLT+ +GF Sbjct 1 MNDDP-NALARIWIDVVADLTSDSPGGDLP--------PLTRGQKAWLALVKPLTLAQGF 51 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQ-LGVRIAPPATDEADDTT------- 112 ALLSVPS F Q IER LR PI AL R LG Q++ LGVRIA P DE + Sbjct 52 ALLSVPSPFAQEAIERDLREPILHALGRHLGEQVEGLGVRIAAPVDDEPESEAPSRERRP 111 Query 113 ------VPPSENPATTSPDT----------------TTDNDEIDDSAAARGDNQHSWPSY 150 P P+ TS T TTD +E+DD + A SWPSY Sbjct 112 DPEPVHTPRHLEPSVTSSGTFRRRRFGSGDDQPYSDTTDFEEVDDDSEALASVHESWPSY 171 Query 151 FTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGES 210 FT+ P A G SLN +YTFDTFVIG+SNRFAHAAA+AIAEAPARAYNPLFIWG S Sbjct 172 FTKPPAGPAPAATGGNSLNAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFIWGAS 231 Query 211 GLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLV 270 GLGKTHLLHAAG+YAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKR YR+ DVLLV Sbjct 232 GLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLV 291 Query 271 DDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDV 330 DDIQFIEGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLE+RLRTRFEWGLITDV Sbjct 292 DDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDV 351 Query 331 QPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPI 390 QPPELETRIAIL KKA+M+RL VPDDVLELIAS IERNIRELEGALIRVTAFASLN+ P+ Sbjct 352 QPPELETRIAILSKKARMDRLEVPDDVLELIASRIERNIRELEGALIRVTAFASLNRQPL 411 Query 391 DKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYL 450 D LAE+VLRDL+ D+++++I+AATIMA TAEYF+ ++++L GPGK R LA +RQI+MYL Sbjct 412 DLTLAEVVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKARPLASARQISMYL 471 Query 451 CRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 CRELTDLSLPKIGQ FGRDHTTVMYA +KI EM ERR+V+D V+ELT RI+QRSKR Sbjct 472 CRELTDLSLPKIGQTFGRDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQRSKR 528 >gi|325677520|ref|ZP_08157184.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] gi|325551767|gb|EGD21465.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] Length=524 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/534 (68%), Positives = 409/534 (77%), Gaps = 39/534 (7%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDP + VW VV+EL +SDA+ S LT Q+AWL LV+PLT +GF Sbjct 1 MNDDP-NALANVWRDVVAEL----------TSDASDSPKLTKAQKAWLALVRPLTYAQGF 49 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQ-LGVRIAPPATDEADDT--TVPPSE 117 ALLSVPS Q IER LR PI AL+R LG +++ LGVRIA P+ D +D+ P E Sbjct 50 ALLSVPSPLAQEAIERDLREPILRALNRHLGQKVEGLGVRIAAPSEDRGEDSGDAAPADE 109 Query 118 NP----------------------ATTSPDTTTD---NDEIDDSAAARGDNQHSWPSYFT 152 T S T D ++E+DD A SWPSYFT Sbjct 110 TDRGAALDFADSSYPDGASARRRHLTMSESVTVDLAEHEEVDDDREALASVHESWPSYFT 169 Query 153 ERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGL 212 + P ++ G SLN +YTFDTFVIGASNRFAHAAA+AIAEAPARAYNPLFIWG SGL Sbjct 170 KPPTGPSTSATGGNSLNAKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFIWGASGL 229 Query 213 GKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDD 272 GKTHLLHAAG+YAQRLFPG+RVKYVSTEEFTNDFINSLRDDRKVAFKR YR+ D+LLVDD Sbjct 230 GKTHLLHAAGHYAQRLFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDD 289 Query 273 IQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQP 332 IQFIEGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLE+RLRTRFEWGLITDVQP Sbjct 290 IQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQP 349 Query 333 PELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 PELETRIAIL KKA+M+RL VP DVLELIAS IERNIRELEGALIRVTAFASLN+ +D Sbjct 350 PELETRIAILSKKARMDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDL 409 Query 393 ALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCR 452 LAE+VLRDL+ D+ ++I+AATIMA TAEYF+T++++L GPGK R LAQ+RQIAMYLCR Sbjct 410 KLAEVVLRDLMPDSAALEINAATIMAVTAEYFNTSIDDLCGPGKARPLAQARQIAMYLCR 469 Query 453 ELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 ELTDLSLPKIGQ FGRDHTTVMYA +KI EM ERR+V+D V+ELT RI+QRSK Sbjct 470 ELTDLSLPKIGQTFGRDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQRSK 523 >gi|312137515|ref|YP_004004851.1| chromosome replication initiator protein dnaa [Rhodococcus equi 103S] gi|311886854|emb|CBH46162.1| chromosome replication initiator protein DnaA [Rhodococcus equi 103S] Length=524 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/534 (67%), Positives = 411/534 (77%), Gaps = 39/534 (7%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDP + VW VV+EL +SDA+ S LT Q+AWL LV+PLT +GF Sbjct 1 MNDDP-NALANVWRDVVAEL----------TSDASDSPKLTKAQKAWLALVRPLTYAQGF 49 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQ-LGVRIAPPATDEADDT--TVPPSE 117 ALLSVPS Q IER LR PI AL+R LG +++ LGVRIA P+ D +D+ P E Sbjct 50 ALLSVPSPLAQEAIERDLREPILRALNRHLGQKVEGLGVRIAAPSEDRGEDSGDAAPADE 109 Query 118 N--------PATTSPDTTT-----------------DNDEIDDSAAARGDNQHSWPSYFT 152 ++ PD + +++E+DD A SWPSYFT Sbjct 110 TDRGAALDFADSSYPDGASARRRHLTMSESVAVDLAEHEEVDDDREALASVHESWPSYFT 169 Query 153 ERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGL 212 + P ++ G SLN +YTFDTFVIGASNRFAHAAA+AIAEAPARAYNPLFIWG SGL Sbjct 170 KPPTGPSTSATGGNSLNAKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFIWGASGL 229 Query 213 GKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDD 272 GKTHLLHAAG+YAQRLFPG+RVKYVSTEEFTNDFINSLRDDRKVAFKR YR+ D+LLVDD Sbjct 230 GKTHLLHAAGHYAQRLFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDD 289 Query 273 IQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQP 332 IQFIEGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLE+RLRTRFEWGLITDVQP Sbjct 290 IQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQP 349 Query 333 PELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 PELETRIAIL KKA+M+RL VP DVLELIAS IERNIRELEGALIRVTAFASLN+ +D Sbjct 350 PELETRIAILSKKARMDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDL 409 Query 393 ALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCR 452 LAE+VLRDL+ D+ ++I+AATIMA TAEYF+T++++L GPGK R LAQ+RQIAMYLCR Sbjct 410 KLAEVVLRDLMPDSAALEINAATIMAVTAEYFNTSIDDLCGPGKARPLAQARQIAMYLCR 469 Query 453 ELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 ELTDLSLPKIGQ FGRDHTTVMYA +KI EM ERR+V+D V+ELT RI+QRSK Sbjct 470 ELTDLSLPKIGQTFGRDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQRSK 523 >gi|226303490|ref|YP_002763448.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229491154|ref|ZP_04384982.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] gi|259645258|sp|C0ZLE1.1|DNAA_RHOE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226182605|dbj|BAH30709.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229321892|gb|EEN87685.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] Length=520 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/531 (68%), Positives = 413/531 (78%), Gaps = 35/531 (6%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 + DDP + VW VV+EL D D G +NL A L+ +Q+A++ LV+PLT+ +GF Sbjct 1 MNDDP-NALARVWVDVVAELTSD---DPG----SNLPA-LSSKQKAFVRLVRPLTLAQGF 51 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQ-LGVRIAPPATDEADDTTVPPSENP 119 ALLSVPS F Q IER LR PI AL R LG Q++ LGVRIA D+AD P E Sbjct 52 ALLSVPSPFAQETIERDLREPILQALGRHLGGQVEGLGVRIA--LEDDADAPAEPVEERT 109 Query 120 ATT-----------------------SPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPH 156 + S T + +E+DD A SWPSYFT+ P Sbjct 110 GSRQFESVNSSGAYRRRRFTEGDGEPSDSETAETEEVDDDREALASVHESWPSYFTKPPA 169 Query 157 NTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTH 216 ++ +G SLN +YTFDTFVIG+SNRFAHAAA+AIAEAPARAYNPLFIWG SGLGKTH Sbjct 170 TPSASGSGANSLNAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTH 229 Query 217 LLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFI 276 LLHAAG+YAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKR YR+ DVLLVDDIQFI Sbjct 230 LLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFI 289 Query 277 EGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELE 336 EGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLE+RLRTRFEWGLITDVQPPELE Sbjct 290 EGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELE 349 Query 337 TRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAE 396 TRIAIL KKA+M+RL VP DVLELIAS IERNIRELEGALIRVTAFASLN+ P+D LAE Sbjct 350 TRIAILSKKARMDRLEVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAE 409 Query 397 IVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTD 456 +VLRDL+ D+++++I+AATIMA TAEYF+ ++++L GPGK R LAQ+RQI+MYLCRELTD Sbjct 410 VVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKARPLAQARQISMYLCRELTD 469 Query 457 LSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 LSLPKIGQ FGRDHTTVMYA +KI EM ERR+V+D V+ELT RI+QRSKR Sbjct 470 LSLPKIGQTFGRDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQRSKR 520 >gi|317509427|ref|ZP_07967045.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] gi|316252256|gb|EFV11708.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] Length=500 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/500 (67%), Positives = 388/500 (78%), Gaps = 28/500 (5%) Query 7 SGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVP 66 S F +W V+++L+ D +++A PLT QQRAWL L +P+++ EGFAL+SVP Sbjct 27 SPFDAIWEEVLAQLS------DETAAEAFGHPPLTKQQRAWLPLAKPVSLGEGFALISVP 80 Query 67 SSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDT 126 SSF + +R LRAPI AL LG +I+L +RIA ++ ++ +P P Sbjct 81 SSFAADAFDRGLRAPIAAALRHILGKEIELNLRIA----SQSQESALPNEPAPVVV---- 132 Query 127 TTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFA 186 E D +AA + + P P AT TSLN RYTFDTFVIGASNRFA Sbjct 133 -----ETDGAAA----EEQAPPQLSVVAP-----ATDTTTSLNARYTFDTFVIGASNRFA 178 Query 187 HAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDF 246 HAA A++EAPARAYNPLFIWG+SGLGKTHLLHAAG+Y QRLF G RVKYVSTEEFTNDF Sbjct 179 HAATFAVSEAPARAYNPLFIWGDSGLGKTHLLHAAGHYTQRLFSGFRVKYVSTEEFTNDF 238 Query 247 INSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDR 306 INSLRDDR+VAFK+ YRDVD+LLVDDIQFI GKEGIQEEFFHTFNTLHN+NKQIVI+SDR Sbjct 239 INSLRDDRRVAFKQRYRDVDLLLVDDIQFIAGKEGIQEEFFHTFNTLHNSNKQIVITSDR 298 Query 307 PPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIE 366 PPK+LA LEDRLRTRFEWGLITDVQPPELETRIAILRKKA ++ L VPDDV ELIAS IE Sbjct 299 PPKKLAALEDRLRTRFEWGLITDVQPPELETRIAILRKKANIDGLDVPDDVAELIASRIE 358 Query 367 RNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDT 426 RNIRELEGALIRVTAFASLN + ALAE+VLRDL+ D+ T++IS + I+ ATAEYF T Sbjct 359 RNIRELEGALIRVTAFASLNHQKLTAALAEMVLRDLVPDSPTLEISVSVILGATAEYFST 418 Query 427 TVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 486 T+EEL GP KTR LAQ+RQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++K+ E+AE Sbjct 419 TIEELCGPAKTRPLAQARQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKKVRKELAE 478 Query 487 RREVFDHVKELTTRIRQRSK 506 RR+V+D V ELT R+RQR+K Sbjct 479 RRQVYDQVHELTARVRQRAK 498 >gi|326383909|ref|ZP_08205593.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] gi|326197368|gb|EGD54558.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] Length=539 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/542 (62%), Positives = 399/542 (74%), Gaps = 53/542 (9%) Query 9 FTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSS 68 F+ +WNAVV++L+ + G +++A PLT QQ+AWL+LV+PLT+ EGFALL+VP+ Sbjct 8 FSDIWNAVVADLSSE-----GGAAEAE---PLTRQQKAWLSLVRPLTMTEGFALLAVPTP 59 Query 69 FVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPP---ATDEADDTTV-------PPSEN 118 VQ +IER+LR + LSR LG + + VR+A P A D V P + + Sbjct 60 LVQEQIERNLRDAVRLTLSRHLGQSVDIAVRVAEPEEIAPQPVDGAGVTGDAYPHPSAAS 119 Query 119 PATTSPDTTTDNDEIDDSAAARG---------------DNQ------------------H 145 + DT D + G D Q Sbjct 120 ATKVTSDTYGTGSPYDAANVGHGGIPTPTYPASPAIPSDEQLAALNYQQPAPPTRPVEPR 179 Query 146 SWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLF 205 W +YF +R T + G TSL+ +YTFDTFVIGASNRFAHA+A+A+AE PARAYNP+F Sbjct 180 EWSTYFEQR--ETSAPDNGTTSLHPKYTFDTFVIGASNRFAHASAVAVAENPARAYNPMF 237 Query 206 IWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDV 265 IWGESGLGKTHLLHAAG+Y+QRLFPGMRVKYVSTEEFTNDFINSLRDDR+VAFKR YRD+ Sbjct 238 IWGESGLGKTHLLHAAGHYSQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDI 297 Query 266 DVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWG 325 D+LL+DDIQF+EGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLEDRLRTRFEWG Sbjct 298 DMLLIDDIQFLEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWG 357 Query 326 LITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASL 385 LITDVQPP+LETRIAILRKKAQM++LA PDDVLELIAS IERNIRELEGALIRVTAFASL Sbjct 358 LITDVQPPDLETRIAILRKKAQMDKLAAPDDVLELIASKIERNIRELEGALIRVTAFASL 417 Query 386 NKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQ 445 N T +D LAE+VL+ LI D+ M +SAA+I+A TA+++D +V++L GP K RAL RQ Sbjct 418 NNTELDTTLAEVVLKALIPDSGPMDVSAASIVAVTADFYDLSVDDLCGPSKVRALTLPRQ 477 Query 446 IAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRS 505 I+MYLCRELTDLSLPKIG+ F RDHTTVM+A +KI EM E R ++D V+ELT RI+QR+ Sbjct 478 ISMYLCRELTDLSLPKIGETFDRDHTTVMHADKKIRKEMHENRNIYDQVQELTARIKQRA 537 Query 506 KR 507 R Sbjct 538 NR 539 >gi|339293081|gb|AEJ45192.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CCDC5079] Length=317 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/317 (99%), Positives = 317/317 (100%), Gaps = 0/317 (0%) Query 191 LAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSL 250 +AIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSL Sbjct 1 MAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSL 60 Query 251 RDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQ 310 RDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQ Sbjct 61 RDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQ 120 Query 311 LATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIR 370 LATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIR Sbjct 121 LATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIR 180 Query 371 ELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEE 430 ELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEE Sbjct 181 ELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEE 240 Query 431 LRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREV 490 LRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREV Sbjct 241 LRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREV 300 Query 491 FDHVKELTTRIRQRSKR 507 FDHVKELTTRIRQRSKR Sbjct 301 FDHVKELTTRIRQRSKR 317 >gi|296392441|ref|YP_003657325.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] gi|296179588|gb|ADG96494.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] Length=487 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/506 (66%), Positives = 382/506 (76%), Gaps = 34/506 (6%) Query 7 SGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVP 66 S F VW V+++L+ D +++A PLT QQRAWL L +P+++ EGFAL+SVP Sbjct 8 SPFDAVWAEVLAQLS------DESATEAFGYPPLTKQQRAWLPLAKPVSLGEGFALISVP 61 Query 67 SSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDT 126 SSF + +R LRAPI AL R LG +I+L +RI S+N T P Sbjct 62 SSFAADAFDRGLRAPIAAALRRILGREIELNLRIT--------------SQNQETPEPKE 107 Query 127 TTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATA------GVTSLNRRYTFDTFVIG 180 + A G + E P TA TSLN RYTF+TFVIG Sbjct 108 SAAAAGDGAQAEETGPAE--------EPPSENSGKTALAPTTDTTTSLNARYTFETFVIG 159 Query 181 ASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 240 ASNRFAHAA A++EAPARAYNPLFIWG+SGLGKTHLLHAAG+Y QRLF G RVKYVSTE Sbjct 160 ASNRFAHAATFAVSEAPARAYNPLFIWGDSGLGKTHLLHAAGHYTQRLFSGFRVKYVSTE 219 Query 241 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 300 EFTNDFINSLRDDR+VAFK+ YRDVD+LLVDDIQFI GKEGIQEEFFHTFNTLHN+NKQI Sbjct 220 EFTNDFINSLRDDRRVAFKQRYRDVDLLLVDDIQFIAGKEGIQEEFFHTFNTLHNSNKQI 279 Query 301 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLEL 360 +I+SDRPPK+LA LEDRLRTRFEWGLITDVQPPELETRIAILRKKA ++ L VPDDV EL Sbjct 280 IITSDRPPKKLAALEDRLRTRFEWGLITDVQPPELETRIAILRKKANIDGLEVPDDVAEL 339 Query 361 IASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAAT 420 IAS IERNIRELEGALIRVTAFASLN + ALAE+VLRDL+ D+ T++IS + I+ AT Sbjct 340 IASRIERNIRELEGALIRVTAFASLNHQKLTSALAEMVLRDLVPDSPTLEISVSVILGAT 399 Query 421 AEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480 AEYF TT+EEL GP KTR LAQ+RQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYA +K+ Sbjct 400 AEYFSTTIEELCGPVKTRPLAQARQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYADKKV 459 Query 481 LSEMAERREVFDHVKELTTRIRQRSK 506 E+AERR+V+D V ELT R+RQR+K Sbjct 460 RKELAERRQVYDQVHELTARVRQRAK 485 >gi|333917680|ref|YP_004491261.1| chromosomal replication initiator protein dnaA [Amycolicicoccus subflavus DQS3-9A1] gi|333479901|gb|AEF38461.1| Chromosomal replication initiator protein dnaA [Amycolicicoccus subflavus DQS3-9A1] Length=568 Score = 631 bits (1627), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 343/534 (65%), Positives = 403/534 (76%), Gaps = 46/534 (8%) Query 3 DDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFAL 62 +DP VW VV EL +GP+ L+ + RA L LV+PL I GFAL Sbjct 50 NDP-RALADVWMKVVEELASGAS-SEGPAR------MLSRKDRALLPLVKPLDISNGFAL 101 Query 63 LSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPA------------------ 104 L+ P++F + IE LR PIT++LSR LG ++L VRIA + Sbjct 102 LAAPTAFAKKAIESSLRDPITESLSRHLGEPVELAVRIAASSDVVPLGTESTATAAQSSS 161 Query 105 ---TDEAD----DTTVPPSENP-ATTSPDTTT----DNDEIDDSAAARGDNQHSWPSYFT 152 T E+D D V + P +PDT ++D ID+++A WP+YFT Sbjct 162 LHDTSESDHSSYDVLVGNGDGPLGDDAPDTFGADPFESDTIDNASAG-------WPNYFT 214 Query 153 ERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGL 212 + P + +A +SLN +YTFDTFVIGASNRFAHAAA+AIAEAPARAYNPLF+WGESGL Sbjct 215 QTPRPPRAVSAK-SSLNPKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFVWGESGL 273 Query 213 GKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDD 272 GKTHLLHA G+YAQRLFPGMRVKYVSTEEFTNDFINSLRDDR+VAFKR YR++D+LL+DD Sbjct 274 GKTHLLHATGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYREIDLLLIDD 333 Query 273 IQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQP 332 IQFIE KEGIQEEFFHTFNTLHNANKQI+ISSDRPPKQLATLE+RLRTRFEWGLITDVQP Sbjct 334 IQFIENKEGIQEEFFHTFNTLHNANKQILISSDRPPKQLATLEERLRTRFEWGLITDVQP 393 Query 333 PELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 PELETRIAIL KKAQM+RL VPDDVL IAS +ERNIRELEGALIRVTAFASLN+ ID Sbjct 394 PELETRIAILSKKAQMDRLDVPDDVLAFIASRVERNIRELEGALIRVTAFASLNRQAIDL 453 Query 393 ALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCR 452 LAE+VLRDL D+ T++I+AATIM+ AEYF +V+EL GPG+TRA+AQ+RQIAMYLCR Sbjct 454 RLAEVVLRDLAPDSRTLEITAATIMSTVAEYFGISVDELCGPGRTRAVAQARQIAMYLCR 513 Query 453 ELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 ELTDLSLPKIGQAFGRDHTTVM+A RK+ ++MA R V++ V+ELT RIRQRSK Sbjct 514 ELTDLSLPKIGQAFGRDHTTVMHADRKVRADMANSRRVYEQVQELTARIRQRSK 567 >gi|324999881|ref|ZP_08120993.1| chromosomal replication initiation protein [Pseudonocardia sp. P1] Length=593 Score = 628 bits (1620), Expect = 7e-178, Method: Compositional matrix adjust. Identities = 344/578 (60%), Positives = 406/578 (71%), Gaps = 81/578 (14%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TD PG VWN V+++L+G S+D+ A L+PQQRA+L L +PL +++G Sbjct 24 MTDQPGD-LGAVWNRVIADLSGS-------SADSGTPA-LSPQQRAFLRLTRPLGLLDGT 74 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIA------------PP----- 103 ALL+ PS F ++ IER LR PI+DAL R LG + L V + PP Sbjct 75 ALLAAPSEFAKDAIERILRRPISDALGRHLGVSVNLAVVVDASAASGGTEVPDPPGFGLP 134 Query 104 ----ATDEADDTTVPP-------SENPATTS----------PDTTTDND----EIDDSAA 138 A D A DT P SE TS P T T +D DD A Sbjct 135 RGVTAGDSARDTGTPEAAASAALSEGSDDTSGTVALDDGTEPATGTGDDGPGTAADDLPA 194 Query 139 ARGDNQHSWPSYFT-------ERPHNTDSAT--AGVTS--------------------LN 169 A ++PS T +P + DS + G TS LN Sbjct 195 ADTGRSRAYPSETTVSSGGWAPQPPSADSGSRDGGGTSWPAYTAPQAGDPVAPRSQTRLN 254 Query 170 RRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLF 229 RYTFDTFVIGASNRF+HAAA+A++EAPARAYNPLFIWGESGLGKTHLLHA G+YAQRLF Sbjct 255 ERYTFDTFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRLF 314 Query 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289 PGMRV+YVSTEEFTNDFINSLRDDRKVAF+R YRDVDVLLVDDIQF+EGKEG QEEFFHT Sbjct 315 PGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFHT 374 Query 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349 FNTLHNANKQIV+SSDRPPK+L TLEDR+RTRFEWGLITD+QPPELETRIAILRKKA + Sbjct 375 FNTLHNANKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQD 434 Query 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTM 409 RLAVP +VLE IA IERNIRELEGALIRVTAFASLN+ +D LAEIVLRDLI D+ Sbjct 435 RLAVPGEVLEFIAERIERNIRELEGALIRVTAFASLNRQAVDTQLAEIVLRDLIPDSAAS 494 Query 410 QISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAF-GR 468 +I+A TIMA TAE+F T+++L GPGKT+ALAQ+RQIAMYLCRELTDLSLP+IGQ F GR Sbjct 495 EITAPTIMAVTAEFFGVTLDDLSGPGKTKALAQARQIAMYLCRELTDLSLPRIGQTFGGR 554 Query 469 DHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 DHTTVM+A +KI +E++ RR+ F+ V+ELT RI+ R++ Sbjct 555 DHTTVMHADKKIRNEISLRRKTFEQVQELTARIKLRAR 592 >gi|296137751|ref|YP_003644994.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] gi|296025885|gb|ADG76655.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] Length=490 Score = 612 bits (1577), Expect = 6e-173, Method: Compositional matrix adjust. Identities = 329/507 (65%), Positives = 389/507 (77%), Gaps = 18/507 (3%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +T DP W AVV +L G+ S+D L T Q++AWL LVQPLT+ EGF Sbjct 1 MTVDP---LIETWTAVVDDLCGE-------STDRTL----TMQEKAWLRLVQPLTLTEGF 46 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVP-PSENP 119 AL++VPS +++ I+R LR PI DALS RLG ++LGVRI+P AT P P P Sbjct 47 ALVAVPSQLMKDVIDRSLRDPIIDALSMRLGQDVELGVRISPDATPPVTVAAEPDPPAGP 106 Query 120 ATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVI 179 +T D N + P + S+ + +SLN++YTF+TFVI Sbjct 107 STA--DLPVPNLPPAAAPLEAPSVTLP-PPMTGPSSKSNGSSGSSGSSLNQKYTFETFVI 163 Query 180 GASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVST 239 GASNRFAHAAA A+AEAPARAYNPLFIWGESGLGKTHLLHAAG+YAQRLFPGMRVKYVST Sbjct 164 GASNRFAHAAAFAVAEAPARAYNPLFIWGESGLGKTHLLHAAGHYAQRLFPGMRVKYVST 223 Query 240 EEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQ 299 EEFTNDFINSL+DDR+V FK+ YRDVD+LLVDDIQF+EGK GIQEEFFHTFNTLHNANKQ Sbjct 224 EEFTNDFINSLKDDRQVQFKQRYRDVDILLVDDIQFLEGKLGIQEEFFHTFNTLHNANKQ 283 Query 300 IVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLE 359 IV+SSDRPPKQLATLEDRLRTRFEWGLITDVQPPELE R+AIL KKAQMER+ VP DVLE Sbjct 284 IVVSSDRPPKQLATLEDRLRTRFEWGLITDVQPPELEIRMAILLKKAQMERIHVPHDVLE 343 Query 360 LIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAA 419 LIA+ I+RNIRELEGALIRVTAFASL +T + LAE+VLRDL+ D T++IS++TI++ Sbjct 344 LIATRIDRNIRELEGALIRVTAFASLTQTDVTYELAEMVLRDLVPDTTTIEISSSTILSV 403 Query 420 TAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRK 479 AEYF+ TV +L+G + RA+ +RQIAMYLCRELT+LSLPKIGQ F RDHTTVMYA+RK Sbjct 404 VAEYFEITVADLKGTERARAVTHARQIAMYLCRELTELSLPKIGQIFDRDHTTVMYAERK 463 Query 480 ILSEMAERREVFDHVKELTTRIRQRSK 506 I EM ERR V+D V+ELTTRI++RS+ Sbjct 464 IRKEMPERRRVYDQVQELTTRIKRRSQ 490 >gi|331693900|ref|YP_004330139.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] gi|326948589|gb|AEA22286.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] Length=555 Score = 592 bits (1527), Expect = 4e-167, Method: Compositional matrix adjust. Identities = 339/564 (61%), Positives = 401/564 (72%), Gaps = 68/564 (12%) Query 1 LTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGF 60 +TD PG VWN V+ +L+G D P PL+ QQRA+L L +PL +++G Sbjct 1 MTDQPGD-LGAVWNRVIGDLSGSSGDGDTP--------PLSAQQRAFLRLTRPLGLLDGT 51 Query 61 ALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPP----- 115 ALL+ PS F ++ IER LR PI+DAL R LG Q+ L V + A + PP Sbjct 52 ALLAAPSEFAKDAIERILRKPISDALGRHLGVQVNLAVVVDASAASGGTEVPDPPDPRAA 111 Query 116 --------SENPA--TTSPDTTTDNDE------------------IDDSA--------AA 139 S P+ S D D + IDDSA AA Sbjct 112 ARVAPAERSAGPSGLAASVDVVGDAEPLSANGSHSDLGSLGEAAPIDDSAGRFRSGPAAA 171 Query 140 RGD----------------NQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASN 183 + D Q WP+Y + + A + LN +YTFDTFVIGASN Sbjct 172 QADLLPPPASGIPGPDSRPGQDGWPTY-SAPAPDAPPAARSRSMLNEKYTFDTFVIGASN 230 Query 184 RFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFT 243 RF+HAAA+A+AEAPARAYNPLFIWGESGLGKTHLLHA G+YAQRLFPGMRV+YVSTEEFT Sbjct 231 RFSHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFT 290 Query 244 NDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVIS 303 NDFINSLRDDRKVAF+R YRDVDVLLVDD+QF+EGKEG QEEFFHTFNTLHN+NKQIV+S Sbjct 291 NDFINSLRDDRKVAFQRRYRDVDVLLVDDVQFLEGKEGTQEEFFHTFNTLHNSNKQIVVS 350 Query 304 SDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIAS 363 SDRPPK+L TLEDR+RTRFEWGLITD+QPPELETRIAILRKKA +RLAVP DVLE IA+ Sbjct 351 SDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQDRLAVPGDVLEFIAA 410 Query 364 SIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEY 423 IERNIRELEGALIRVTAFASLN+ P+D LAEIVLRDLI D+ +I+A TIMA TAE+ Sbjct 411 RIERNIRELEGALIRVTAFASLNRQPVDTQLAEIVLRDLIPDSAASEITAPTIMAVTAEF 470 Query 424 FDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAF-GRDHTTVMYAQRKILS 482 FD T++EL GPGKT+ALAQ+RQIAMYLCRELTDLSLP+IGQ F GRDHTTVM+A +KI + Sbjct 471 FDVTMDELCGPGKTKALAQARQIAMYLCRELTDLSLPRIGQTFGGRDHTTVMHADKKIRN 530 Query 483 EMAERREVFDHVKELTTRIRQRSK 506 E++ RR+ F+ V+ELT RI+QR++ Sbjct 531 EISLRRKTFEQVQELTARIKQRAR 554 >gi|54021965|ref|YP_116207.1| putative replication initiator protein [Nocardia farcinica IFM 10152] gi|61212513|sp|Q5Z3Z8.1|DNAA_NOCFA RecName: Full=Chromosomal replication initiator protein DnaA gi|54013473|dbj|BAD54843.1| putative replication initiator protein [Nocardia farcinica IFM 10152] Length=662 Score = 592 bits (1526), Expect = 5e-167, Method: Compositional matrix adjust. Identities = 294/361 (82%), Positives = 327/361 (91%), Gaps = 0/361 (0%) Query 146 SWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLF 205 SWP+YF + +T + SLN +YTF+TFVIGASNRFAHAAA+AIAEAPARAYNPLF Sbjct 302 SWPTYFAKNQESTPAPANSSASLNAKYTFETFVIGASNRFAHAAAVAIAEAPARAYNPLF 361 Query 206 IWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDV 265 +WG SGLGKTHLLHAAG+YAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKR YR+ Sbjct 362 VWGASGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRET 421 Query 266 DVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWG 325 D+LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIV+SSDRPPKQLATLE+RLRTRFEWG Sbjct 422 DILLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWG 481 Query 326 LITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASL 385 LITDVQPPELETRIAILRKKA+M+RL VP DVLELIAS +ERNIRELEGALIRVTAFASL Sbjct 482 LITDVQPPELETRIAILRKKARMDRLDVPHDVLELIASRVERNIRELEGALIRVTAFASL 541 Query 386 NKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQ 445 N P+D +LAE+VLRDL+ D T++I+AATIMA TAEYF+TT+EEL GPGK R LAQ+RQ Sbjct 542 NGQPLDLSLAEVVLRDLMPDTATLEINAATIMAVTAEYFNTTLEELTGPGKARPLAQARQ 601 Query 446 IAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRS 505 IAMYLCRELTDLSLPKIGQAFGRDHTTVMYA++K+ EM ERR V+D V+ELT RI+QRS Sbjct 602 IAMYLCRELTDLSLPKIGQAFGRDHTTVMYAEKKVRKEMTERRRVYDQVQELTARIKQRS 661 Query 506 K 506 + Sbjct 662 R 662 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/124 (46%), Positives = 75/124 (61%), Gaps = 9/124 (7%) Query 3 DDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFAL 62 DD + TVW V++EL S+D ++ A +T Q+AWL LV+P+T+ +GFAL Sbjct 2 DDEQNVLATVWPEVIAELTTG-------SADGSIPA-VTRAQQAWLKLVKPITVAQGFAL 53 Query 63 LSVPSSFVQNEIERHLRAPITDALSRRLGHQIQ-LGVRIAPPATDEADDTTVPPSENPAT 121 LSVPSS Q IER LR PI +L RRLG Q++ LGVRIA PAT A+ P T Sbjct 54 LSVPSSLAQEAIERDLREPILRSLGRRLGPQVEGLGVRIAAPATPTAERAAANPRHARMT 113 Query 122 TSPD 125 + P+ Sbjct 114 SRPE 117 >gi|1079499|gb|AAC43711.1| DnaA protein [Mycobacterium smegmatis] gi|1585267|prf||2124373B dnaA gene Length=495 Score = 579 bits (1493), Expect = 3e-163, Method: Compositional matrix adjust. Identities = 315/434 (73%), Positives = 340/434 (79%), Gaps = 8/434 (1%) Query 40 LTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVR 99 LTPQQRAWL LV+PL I EGFALLSVP+ FVQNEIERH + R Sbjct 2 LTPQQRAWLKLVKPLVIAEGFALLSVPTPFVQNEIERHCGN--PSSPRSAASSASAWNWR 59 Query 100 IAPPATDEADDTTVPPSENPATTS-PDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNT 158 A A T +++PA S P D DEIDD AR + Q SWP YF+ +T Sbjct 60 SHRDAHRRARGRTRHFADSPAPASVPAGPADADEIDDDRDARVNAQESWPKYFSRPEPDT 119 Query 159 DSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-NPLFIWGESGLGKTHL 217 S + +LNRRYT ASNRFAHA + +P+ A P+FI G GKTHL Sbjct 120 SSDDSNAVNLNRRYTCRHVRDRASNRFAHARR---SRSPSAARPTPVFI-CRVGSGKTHL 175 Query 218 LHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIE 277 LHA GNYAQRLFPGMRVKY STEEFTNDFINSLRDDRK +FKRSYRD+D+LLVDDIQFIE Sbjct 176 LHAHGNYAQRLFPGMRVKYASTEEFTNDFINSLRDDRKASFKRSYRDIDILLVDDIQFIE 235 Query 278 GKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELET 337 GKEGIQEEFFHTFNTLHN+NKQIVISSDRPPKQLATLEDR RTRFEWGLITDVQPPELET Sbjct 236 GKEGIQEEFFHTFNTLHNSNKQIVISSDRPPKQLATLEDRFRTRFEWGLITDVQPPELET 295 Query 338 RIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEI 397 RIAILRKKAQM+RL VPDDVLELIASSIERNIRELEGALIRVTAFASLNKT ID++LAE+ Sbjct 296 RIAILRKKAQMDRLDVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTRIDRSLAEV 355 Query 398 VLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDL 457 VLRDLIADA TMQIS A IMA TAEYF+TTVEELRGPGKTRALAQSRQIAMY+CRELTDL Sbjct 356 VLRDLIADATTMQISTAAIMAVTAEYFETTVEELRGPGKTRALAQSRQIAMYMCRELTDL 415 Query 458 SLPKIGQAFGRDHT 471 SLPKIGQAFGRDHT Sbjct 416 SLPKIGQAFGRDHT 429 >gi|319949431|ref|ZP_08023492.1| chromosomal replication initiation protein [Dietzia cinnamea P4] gi|319436893|gb|EFV91952.1| chromosomal replication initiation protein [Dietzia cinnamea P4] Length=501 Score = 565 bits (1455), Expect = 1e-158, Method: Compositional matrix adjust. Identities = 307/513 (60%), Positives = 375/513 (74%), Gaps = 39/513 (7%) Query 12 VWNAVVSELNGDPKV--DDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSF 69 VW+AV+ L DP++ DD P+ L+ QQ+AWL LVQP+ +V GFA+L+ PS+F Sbjct 8 VWSAVLDRLT-DPELASDDNPA--------LSRQQQAWLRLVQPIAVVNGFAMLAAPSAF 58 Query 70 VQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTD 129 ++ IE LR PIT ALS +LG + L V++ DT++ + P D D Sbjct 59 ARDNIESVLRGPITRALSAQLGEPVDLAVKV---------DTSLAGGQPPTDDQDDQVID 109 Query 130 NDEIDDSAAARGDNQH----SWPSYFTERP-------HNTDS----ATAGVTSLNRRYTF 174 DEI AA + +H + P TE H +D + A LN RYTF Sbjct 110 ADEIHRPAA---EEEHPPATTRPRRMTEEQIAAERLLHGSDRDEALSAATAPGLNERYTF 166 Query 175 DTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRV 234 FV G SNRFA AAALA+AEAPARAYNPLFIWGESGLGKTHLLHA G+Y+ R++ +V Sbjct 167 SAFVQGNSNRFARAAALAVAEAPARAYNPLFIWGESGLGKTHLLHAIGHYSLRMYSEQKV 226 Query 235 KYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLH 294 KYVSTEEFTNDFINS+RD R+ FK+ YR+ D+LLVDDIQF+ GKE +QEEFFHTFNT+H Sbjct 227 KYVSTEEFTNDFINSVRDGRQNMFKKRYREADILLVDDIQFLIGKEQVQEEFFHTFNTIH 286 Query 295 NANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVP 354 NA KQIVISSDRPPKQL LEDRLRTRFEWGLITD+QPPELETRIAIL KKA+ E VP Sbjct 287 NAQKQIVISSDRPPKQLQPLEDRLRTRFEWGLITDIQPPELETRIAILDKKAKSENYVVP 346 Query 355 DDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAA 414 DVLELIA+ ++RNIRELEGALIRV AFASLN ID LAEIVLRD+++D +++QISAA Sbjct 347 RDVLELIATRVQRNIRELEGALIRVVAFASLNGHEIDVPLAEIVLRDVVSDDDSLQISAA 406 Query 415 TIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAF-GRDHTTV 473 TIMA TAE+F T+++EL G KTR+L+++RQIAMYLCRELTDLSLPKIG F G+DHTTV Sbjct 407 TIMAVTAEFFSTSIDELCGTSKTRSLSRARQIAMYLCRELTDLSLPKIGVTFGGKDHTTV 466 Query 474 MYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 MYAQRKIL E+ + R +D ++ELT RI++RS+ Sbjct 467 MYAQRKILKEIKDDRRTYDQIQELTARIKERSR 499 >gi|300781938|ref|YP_003762229.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] gi|299791452|gb|ADJ41827.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] gi|340523291|gb|AEK38496.1| chromosomal replication initiation protein [Amycolatopsis mediterranei S699] Length=547 Score = 550 bits (1418), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 280/368 (77%), Positives = 322/368 (88%), Gaps = 8/368 (2%) Query 147 WPSYFTERPHNTDSATA------GVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARA 200 WP+ F+ +P TA T LN +YTFDTFVIGASNRFAHAAA+A+AEAPARA Sbjct 181 WPT-FSGQPIAGQPYTAPAQPQTSKTKLNEKYTFDTFVIGASNRFAHAAAVAVAEAPARA 239 Query 201 YNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKR 260 YNPLFIWGESGLGKTHLLHA G+YAQRLFPGMRV+YVSTEEFTNDFINSLRDDRKVAF+R Sbjct 240 YNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQR 299 Query 261 SYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRT 320 YRD+D+LLVDDIQF+EGKEG QEEFFHTFNTLHNANKQIV+SSDRPPK+L TLEDRLRT Sbjct 300 RYRDIDILLVDDIQFLEGKEGTQEEFFHTFNTLHNANKQIVVSSDRPPKRLETLEDRLRT 359 Query 321 RFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVT 380 RFEWGLITD+QPPELETRIAILRKKA +RLAVP +VLE IAS +E NIRELEGALIRVT Sbjct 360 RFEWGLITDIQPPELETRIAILRKKAAQDRLAVPGEVLEFIASRVEANIRELEGALIRVT 419 Query 381 AFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRAL 440 AFASLN+ P+D ALAEIVLRDLI D++ +I+A TIM T+E+FD T+++L GPGKT+AL Sbjct 420 AFASLNQQPVDSALAEIVLRDLIPDSHAPEITAPTIMGVTSEFFDVTLDDLCGPGKTKAL 479 Query 441 AQSRQIAMYLCRELTDLSLPKIGQAF-GRDHTTVMYAQRKILSEMAERREVFDHVKELTT 499 A +RQIAMYLCRELTD+SLPKIGQ F GRDHTTVM+A +KI EMAERR ++D V+ELT+ Sbjct 480 ATARQIAMYLCRELTDMSLPKIGQTFGGRDHTTVMHADKKIRKEMAERRRIYDQVQELTS 539 Query 500 RIRQRSKR 507 RI+QR+++ Sbjct 540 RIKQRARQ 547 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/90 (46%), Positives = 53/90 (59%), Gaps = 15/90 (16%) Query 11 TVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFV 70 +W VV EL SD LS PQQRAW+ + +P+ +++G ALL+ PS F Sbjct 10 VIWEQVVREL-----------SDGTLS----PQQRAWMRVTRPIGLLDGTALLAAPSDFA 54 Query 71 QNEIERHLRAPITDALSRRLGHQIQLGVRI 100 + IER LR ITDALSRRLG I L V++ Sbjct 55 KEAIERGLRGAITDALSRRLGRAISLAVKV 84 >gi|134096621|ref|YP_001102282.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|291005725|ref|ZP_06563698.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|133909244|emb|CAL99356.1| chromosomal replication initiator protein DnaA [Saccharopolyspora erythraea NRRL 2338] Length=592 Score = 549 bits (1415), Expect = 4e-154, Method: Compositional matrix adjust. Identities = 287/406 (71%), Positives = 332/406 (82%), Gaps = 20/406 (4%) Query 115 PSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSY-------------FTERPHNTDSA 161 P E + +P++ +DE+D+ A WP++ FT H ++ Sbjct 191 PHEGESEAAPES---DDEVDEEREAIDAANEIWPTFGRGQAPEAQQGQPFTAPKHAPPTS 247 Query 162 TAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAA 221 T LN +YTFDTFVIGASNRFAHAAA+A AEAPARAYNPLFIWGESGLGKTHLLHA Sbjct 248 Q---TRLNAKYTFDTFVIGASNRFAHAAAVAAAEAPARAYNPLFIWGESGLGKTHLLHAV 304 Query 222 GNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEG 281 G+YAQRLFPGMRV+YVSTEEFTNDFINSLRDDR+VAF+R YRDVDVLLVDDIQF+EGKEG Sbjct 305 GHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRQVAFQRRYRDVDVLLVDDIQFLEGKEG 364 Query 282 IQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAI 341 QEEFFHTFNTLHN+NKQIV+SSDRPPK L TLEDRLRTRFEWGLITD+QPPELETRIAI Sbjct 365 TQEEFFHTFNTLHNSNKQIVVSSDRPPKGLRTLEDRLRTRFEWGLITDIQPPELETRIAI 424 Query 342 LRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRD 401 LRKKA +R+ P DVLE IA+ IERNIRELEGALIRVTAFASLN+ P+D LAEIVLRD Sbjct 425 LRKKAAQDRMNAPADVLEFIAARIERNIRELEGALIRVTAFASLNRQPVDVQLAEIVLRD 484 Query 402 LIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPK 461 LI D+ T +I+A TIMA TA++F T+++L GPGKT+ALAQ+RQIAMYLCRELTD SLPK Sbjct 485 LIPDSQTPEITAPTIMAVTADFFSVTIDDLCGPGKTKALAQARQIAMYLCRELTDSSLPK 544 Query 462 IGQAF-GRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 IGQ+F GRDHTTVM+A +KI EMAERR V+D V+ELT+RI+Q+S+ Sbjct 545 IGQSFGGRDHTTVMHADKKIRKEMAERRRVYDQVQELTSRIKQQSR 590 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/89 (45%), Positives = 54/89 (61%), Gaps = 15/89 (16%) Query 12 VWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQ 71 VW VV EL+ S L+PQQRAW+ + +P+ +++G ALL+ PS F + Sbjct 11 VWEEVVQELS---------------SGTLSPQQRAWMRVTRPIGLLDGTALLAAPSDFAK 55 Query 72 NEIERHLRAPITDALSRRLGHQIQLGVRI 100 IER LR PITDALSRRLG + L V++ Sbjct 56 EAIERALREPITDALSRRLGRDVSLAVKV 84 >gi|256374161|ref|YP_003097821.1| chromosomal replication initiation protein [Actinosynnema mirum DSM 43827] gi|255918464|gb|ACU33975.1| chromosomal replication initiator protein DnaA [Actinosynnema mirum DSM 43827] Length=577 Score = 548 bits (1411), Expect = 1e-153, Method: Compositional matrix adjust. Identities = 276/354 (78%), Positives = 314/354 (89%), Gaps = 4/354 (1%) Query 154 RPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLG 213 RP N S+ T LN +Y FDTFVIGASNRFAHAAA+A+AEAPARAYNPLFIWGESGLG Sbjct 217 RPANPASSQ---TRLNEKYNFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGESGLG 273 Query 214 KTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDI 273 KTHLLHA G+YAQRLFPGMRV+YVSTEEFTNDFINSLRDDRKVAF+R YRD+DVLLVDDI Sbjct 274 KTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDVLLVDDI 333 Query 274 QFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPP 333 QF+EGKEG QEEFFHTFNTLHN+NKQIV+SSDRPPK+L TLEDRLRTRFEWGLITD+QPP Sbjct 334 QFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPP 393 Query 334 ELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKA 393 ELETRIAILRKKA +RLA P +VLE IA+ + RNIRELEGALIRVTAFASLN+ P+D Sbjct 394 ELETRIAILRKKAAQDRLAAPAEVLEFIAARVVRNIRELEGALIRVTAFASLNRQPVDVQ 453 Query 394 LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRE 453 LAEIVLRDLI D++ +I+A TIMA TAE+F+ T+E+L GPGKT+ L+ +RQI+MYLCRE Sbjct 454 LAEIVLRDLIPDSHVPEITAPTIMAVTAEFFEVTIEDLCGPGKTKVLSTARQISMYLCRE 513 Query 454 LTDLSLPKIGQAF-GRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSK 506 LTDLSLPKIGQ F GRDHTTVMYA +KI EMAERR ++D V+ELT+RI+QRS+ Sbjct 514 LTDLSLPKIGQTFGGRDHTTVMYADKKIRKEMAERRRIYDQVQELTSRIKQRSR 567 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/92 (45%), Positives = 57/92 (62%), Gaps = 10/92 (10%) Query 12 VWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQ 71 VW VV EL ++ A S+ L+PQQRAW+ + +P+ +++G ALL+ PS F + Sbjct 11 VWEQVVEEL----------ANSALSSSTLSPQQRAWMRVTRPIGLLDGTALLAAPSDFAK 60 Query 72 NEIERHLRAPITDALSRRLGHQIQLGVRIAPP 103 IER LR PIT ALSRRLG + L V++ P Sbjct 61 EAIERALREPITAALSRRLGRAVSLAVKVDSP 92 >gi|257054090|ref|YP_003131922.1| chromosomal replication initiation protein [Saccharomonospora viridis DSM 43017] gi|256583962|gb|ACU95095.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis DSM 43017] gi|260600338|gb|ACX47006.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis] Length=597 Score = 548 bits (1411), Expect = 1e-153, Method: Compositional matrix adjust. Identities = 274/369 (75%), Positives = 319/369 (87%), Gaps = 9/369 (2%) Query 147 WPSYFTERPHNTDSATAGV------TSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARA 200 WP+ F+ +P TA T LN +YTFDTFVIGASNRFAHAAA+A+AEAP+RA Sbjct 230 WPT-FSGQPIAGQPYTAPAQPQTSKTRLNEKYTFDTFVIGASNRFAHAAAVAVAEAPSRA 288 Query 201 YNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKR 260 YNPLF+WGESGLGKTHLLHA G+YAQRLFPGMRV+YVSTEEFTNDFINSLRDDRKVAF+R Sbjct 289 YNPLFVWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQR 348 Query 261 SYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRT 320 YRD+D+LLVDDIQF+EGKEG QEEFFHTFNTLHNANKQIV+SSDRPPK+L TLE+RLRT Sbjct 349 RYRDIDILLVDDIQFLEGKEGTQEEFFHTFNTLHNANKQIVVSSDRPPKRLETLEERLRT 408 Query 321 RFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVT 380 RFEWGLITD+QPPELETRIAILRKKA +RLAVP +VLE IA+ +E NIRELEGALIRVT Sbjct 409 RFEWGLITDIQPPELETRIAILRKKAAQDRLAVPGEVLEFIAARVEANIRELEGALIRVT 468 Query 381 AFASLNKTPIDKALAEIVLRDLI-ADANTMQISAATIMAATAEYFDTTVEELRGPGKTRA 439 AFASLN+ P+D LAE+VLRDL+ D+ +ISA+ IM TAE+FD TVE+L GPGKT+A Sbjct 469 AFASLNQQPVDVGLAEVVLRDLMPTDSQAPEISASMIMNVTAEFFDVTVEDLCGPGKTKA 528 Query 440 LAQSRQIAMYLCRELTDLSLPKIGQAF-GRDHTTVMYAQRKILSEMAERREVFDHVKELT 498 LA +RQIAMYLCRELTD+SLP+IGQ F GRDHTTVM+A +KI EMAERR ++D V+ELT Sbjct 529 LATARQIAMYLCRELTDMSLPRIGQTFGGRDHTTVMHADKKIRKEMAERRRIYDQVQELT 588 Query 499 TRIRQRSKR 507 +RI+Q +++ Sbjct 589 SRIKQYARQ 597 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/92 (41%), Positives = 53/92 (58%), Gaps = 15/92 (16%) Query 9 FTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSS 68 VW VV+EL+ L+PQQRAW+ + +P+ +++G ALL+ PS Sbjct 8 LAVVWEQVVAELS---------------EGTLSPQQRAWMRVTRPIGLLDGTALLAAPSD 52 Query 69 FVQNEIERHLRAPITDALSRRLGHQIQLGVRI 100 F + IER LR PIT ALSR LG ++ L V++ Sbjct 53 FAKEAIERALREPITSALSRHLGREVSLAVKV 84 >gi|302531358|ref|ZP_07283700.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] gi|302440253|gb|EFL12069.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] Length=585 Score = 547 bits (1409), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 273/343 (80%), Positives = 312/343 (91%), Gaps = 1/343 (0%) Query 166 TSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYA 225 T LN +Y FDTFVIGASNRFAHAAA+A+AEAPARAYNPLFIWGESGLGKTHLLHA G+YA Sbjct 243 TKLNEKYNFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYA 302 Query 226 QRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEE 285 QRLFPGMRV+YVSTEEFTNDFINSLRDDRKVAF+R YRD+D+LLVDDIQF+EGKEG QEE Sbjct 303 QRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEE 362 Query 286 FFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKK 345 FFHTFNTLHNANKQIV+SSDRPPK+L TLEDRLRTRFEWGLITD+QPPELETRIAILRKK Sbjct 363 FFHTFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAILRKK 422 Query 346 AQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIAD 405 A +RLAVP +VLE IAS +E NIRELEGALIRVTAFASLN+ P++ LAEIVLRDLI D Sbjct 423 AAQDRLAVPGEVLEFIASRVEANIRELEGALIRVTAFASLNQQPVEVGLAEIVLRDLIPD 482 Query 406 ANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQA 465 ++T +I+A TIM TAE+FD T++EL GPGKT+ALA +RQIAMYLCRELT++SLPKIGQ Sbjct 483 SHTPEITAPTIMGVTAEFFDVTLDELCGPGKTKALATARQIAMYLCRELTEMSLPKIGQT 542 Query 466 F-GRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 507 F GRDHTTVM+A +KI EMAERR ++D V+ELT+RI+QR+++ Sbjct 543 FGGRDHTTVMHADKKIRKEMAERRRIYDQVQELTSRIKQRARQ 585 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/121 (38%), Positives = 62/121 (52%), Gaps = 24/121 (19%) Query 11 TVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFV 70 +W VV EL SD LS PQQRAW+ + +P+ +++G ALL+ PS F Sbjct 36 VIWEQVVREL-----------SDGTLS----PQQRAWMRVTRPIGLLDGTALLAAPSDFA 80 Query 71 QNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDN 130 IER LR IT+ALSRRLG + L V++ D+T P + P + +N Sbjct 81 NEAIERALRTSITEALSRRLGRPVSLAVKV---------DSTEPVAPAPRYVASPARVEN 131 Query 131 D 131 D Sbjct 132 D 132 >gi|258650272|ref|YP_003199428.1| chromosomal replication initiation protein [Nakamurella multipartita DSM 44233] gi|258553497|gb|ACV76439.1| chromosomal replication initiator protein DnaA [Nakamurella multipartita DSM 44233] Length=557 Score = 541 bits (1395), Expect = 7e-152, Method: Compositional matrix adjust. Identities = 275/362 (76%), Positives = 316/362 (88%), Gaps = 3/362 (0%) Query 147 WPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFI 206 WP+Y T R + A + LN +Y+F+TFVIGASNRFAHAAA+A+AEAPA AYNPLFI Sbjct 198 WPTYSTRR--DQAPPNAAQSRLNEKYSFETFVIGASNRFAHAAAVAVAEAPAVAYNPLFI 255 Query 207 WGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVD 266 WG+SGLGKTHLLH G+YAQRLFPGMRV+YVS+EEFTNDFINSLRDDRKVAF+R YRDVD Sbjct 256 WGDSGLGKTHLLHGIGHYAQRLFPGMRVRYVSSEEFTNDFINSLRDDRKVAFQRRYRDVD 315 Query 267 VLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGL 326 VLLVDDIQF+EGKEG QEEFFHTFNTL+NANKQIVISSDRPPK+L TLEDR+RTRFEWGL Sbjct 316 VLLVDDIQFLEGKEGTQEEFFHTFNTLYNANKQIVISSDRPPKRLETLEDRMRTRFEWGL 375 Query 327 ITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLN 386 ITD+QPPELETRIAILRKKA ++R+ PDDVLE IAS IERNIRELEGALIRVTAFASLN Sbjct 376 ITDIQPPELETRIAILRKKAALDRMNAPDDVLEFIASRIERNIRELEGALIRVTAFASLN 435 Query 387 KTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQI 446 K +D ALA+IVLRDL+ DA + I AATIMA TAEYF+ T++EL GP KT+ +A +RQI Sbjct 436 KQAVDLALAQIVLRDLVRDAVSNDIDAATIMAVTAEYFNVTLDELCGPVKTKQIAMARQI 495 Query 447 AMYLCRELTDLSLPKIGQAF-GRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRS 505 AMYLCRELTDL+LPKIG F GRDHTTVM+A +KI +E+AERR+ +DHV+ELT RIR R+ Sbjct 496 AMYLCRELTDLTLPKIGATFGGRDHTTVMHATKKIRTELAERRQTYDHVQELTARIRDRA 555 Query 506 KR 507 +R Sbjct 556 RR 557 Lambda K H 0.317 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1098731157348 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40