BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0002 Length=402 Score E Sequences producing significant alignments: (Bits) Value gi|344189576|pdb|3P16|A Chain A, Crystal Structure Of Dna Polyme... 788 0.0 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta [My... 788 0.0 gi|9845532|gb|AAG00841.1| DnaN [Mycobacterium tuberculosis] 787 0.0 gi|289445527|ref|ZP_06435271.1| DNA polymerase subunit III beta ... 786 0.0 gi|340625035|ref|YP_004743487.1| DNA polymerase III subunit beta... 785 0.0 gi|31791179|ref|NP_853672.1| DNA polymerase III subunit beta [My... 785 0.0 gi|1321905|emb|CAA63258.1| dnaN [Mycobacterium tuberculosis H37Rv] 753 0.0 gi|296167142|ref|ZP_06849549.1| DNA-directed DNA polymerase III ... 680 0.0 gi|254773055|ref|ZP_05214571.1| DNA polymerase III subunit beta ... 679 0.0 gi|240172092|ref|ZP_04750751.1| DNA polymerase III subunit beta ... 679 0.0 gi|41406100|ref|NP_958936.1| DNA polymerase III subunit beta [My... 678 0.0 gi|183980037|ref|YP_001848328.1| DNA polymerase III (beta chain)... 673 0.0 gi|254818680|ref|ZP_05223681.1| DNA polymerase III subunit beta ... 668 0.0 gi|342862354|ref|ZP_08718995.1| DNA polymerase III subunit beta ... 668 0.0 gi|118615921|ref|YP_904253.1| DNA polymerase III subunit beta [M... 666 0.0 gi|118465865|ref|YP_879305.1| DNA polymerase III subunit beta [M... 654 0.0 gi|15826867|ref|NP_301130.1| DNA polymerase III subunit beta [My... 627 1e-177 gi|333988642|ref|YP_004521256.1| DNA polymerase III subunit beta... 625 6e-177 gi|120401030|ref|YP_950859.1| DNA polymerase III subunit beta [M... 622 3e-176 gi|126432615|ref|YP_001068306.1| DNA polymerase III subunit beta... 619 2e-175 gi|108796983|ref|YP_637180.1| DNA polymerase III subunit beta [M... 618 5e-175 gi|118468117|ref|YP_884424.1| DNA polymerase III subunit beta [M... 608 7e-172 gi|145221420|ref|YP_001132098.1| DNA polymerase III subunit beta... 600 1e-169 gi|169627110|ref|YP_001700759.1| DNA polymerase III subunit beta... 562 3e-158 gi|296137753|ref|YP_003644996.1| DNA polymerase III subunit beta... 522 5e-146 gi|226303491|ref|YP_002763449.1| DNA polymerase III beta subunit... 517 1e-144 gi|229491191|ref|ZP_04385019.1| DNA polymerase III, beta subunit... 517 1e-144 gi|111020656|ref|YP_703628.1| DNA polymerase III subunit beta [R... 515 4e-144 gi|343928736|ref|ZP_08768181.1| DNA polymerase III beta subunit ... 512 3e-143 gi|226362896|ref|YP_002780676.1| DNA polymerase III subunit beta... 511 7e-143 gi|325677519|ref|ZP_08157183.1| DNA-directed DNA polymerase III ... 509 3e-142 gi|312137516|ref|YP_004004852.1| DNA polymerase III beta subunit... 508 6e-142 gi|262200048|ref|YP_003271256.1| DNA polymerase III subunit beta... 507 1e-141 gi|54021966|ref|YP_116208.1| DNA polymerase III subunit beta [No... 504 7e-141 gi|333917681|ref|YP_004491262.1| DNA polymerase III subunit beta... 493 2e-137 gi|326383910|ref|ZP_08205594.1| DNA polymerase III subunit beta ... 469 5e-130 gi|319949430|ref|ZP_08023491.1| DNA polymerase III subunit beta ... 458 7e-127 gi|54025936|ref|YP_120178.1| DNA polymerase III subunit beta [No... 448 6e-124 gi|134096622|ref|YP_001102283.1| DNA polymerase III subunit beta... 445 5e-123 gi|3953450|gb|AAC83392.1| DnaN [Mycobacterium avium] 432 7e-119 gi|334564473|ref|ZP_08517464.1| DNA polymerase III subunit beta ... 430 3e-118 gi|256374162|ref|YP_003097822.1| DNA polymerase III subunit beta... 428 7e-118 gi|300781939|ref|YP_003762230.1| DNA polymerase III subunit beta... 426 3e-117 gi|331693901|ref|YP_004330140.1| DNA polymerase III subunit beta... 422 7e-116 gi|324999883|ref|ZP_08120995.1| DNA polymerase III subunit beta ... 418 6e-115 gi|68535064|ref|YP_249769.1| DNA polymerase III subunit beta [Co... 418 9e-115 gi|305681648|ref|ZP_07404454.1| DNA polymerase III, beta subunit... 408 7e-112 gi|237784639|ref|YP_002905344.1| DNA polymerase III subunit beta... 407 1e-111 gi|225020876|ref|ZP_03710068.1| hypothetical protein CORMATOL_00... 407 1e-111 gi|336324563|ref|YP_004604529.1| DNA polymerase III subunit beta... 407 2e-111 >gi|344189576|pdb|3P16|A Chain A, Crystal Structure Of Dna Polymerase Iii Sliding Clamp gi|344189577|pdb|3P16|B Chain B, Crystal Structure Of Dna Polymerase Iii Sliding Clamp gi|344189578|pdb|3P16|C Chain C, Crystal Structure Of Dna Polymerase Iii Sliding Clamp gi|344189579|pdb|3P16|D Chain D, Crystal Structure Of Dna Polymerase Iii Sliding Clamp gi|344189580|pdb|3P16|E Chain E, Crystal Structure Of Dna Polymerase Iii Sliding Clamp gi|344189581|pdb|3P16|F Chain F, Crystal Structure Of Dna Polymerase Iii Sliding Clamp Length=408 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/402 (100%), Positives = 402/402 (100%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 7 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 66 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT Sbjct 67 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 126 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA Sbjct 127 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 186 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 187 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 246 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 247 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 306 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 307 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 366 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG Sbjct 367 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 408 >gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Rv] gi|15839374|ref|NP_334411.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CDC1551] gi|148659759|ref|YP_001281282.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra] 68 more sequence titles Length=402 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/402 (100%), Positives = 402/402 (100%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT Sbjct 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA Sbjct 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG Sbjct 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 >gi|9845532|gb|AAG00841.1| DnaN [Mycobacterium tuberculosis] Length=402 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/402 (99%), Positives = 402/402 (100%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPG+VLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT Sbjct 61 YEVSAEAQVGAEIVSPGTVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA Sbjct 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG Sbjct 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 >gi|289445527|ref|ZP_06435271.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CPHL_A] gi|289418485|gb|EFD15686.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CPHL_A] Length=402 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/402 (99%), Positives = 402/402 (100%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT Sbjct 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA Sbjct 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNG+GPFPAVSTDYVYLLMPVRLPG Sbjct 361 KPALLRPVSGDDRPVAGLNGDGPFPAVSTDYVYLLMPVRLPG 402 >gi|340625035|ref|YP_004743487.1| DNA polymerase III subunit beta DNAN [Mycobacterium canettii CIPT 140010059] gi|340003225|emb|CCC42342.1| DNA polymerase III (beta chain) DNAN (DNA nucleotidyltransferase) [Mycobacterium canettii CIPT 140010059] Length=402 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/402 (99%), Positives = 401/402 (99%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT Sbjct 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLP+ETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEI GETVVLAA Sbjct 121 MPVEDYPTLPTLPDETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEIFGETVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG Sbjct 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 >gi|31791179|ref|NP_853672.1| DNA polymerase III subunit beta [Mycobacterium bovis AF2122/97] gi|121635885|ref|YP_976108.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635912|ref|YP_976135.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] 7 more sequence titles Length=402 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/402 (99%), Positives = 401/402 (99%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPV VHVEGNRVALTCGNARFSLPT Sbjct 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVGVHVEGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA Sbjct 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG Sbjct 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 >gi|1321905|emb|CAA63258.1| dnaN [Mycobacterium tuberculosis H37Rv] Length=399 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/402 (98%), Positives = 392/402 (98%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD Sbjct 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT Sbjct 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVE L A Sbjct 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVESLVRRG--CA 178 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TD RLAVREL+WSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL Sbjct 179 TDS-RLAVRELEWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 237 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME Sbjct 238 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 297 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG Sbjct 298 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 357 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG Sbjct 358 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 399 >gi|296167142|ref|ZP_06849549.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897464|gb|EFG77063.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=399 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/402 (87%), Positives = 368/402 (92%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTR GL+DL FRL+RESFADAVSWVAKNLP RPAVPVLSGVLL+GSD GLTISGFD Sbjct 1 MDAATTRAGLSDLKFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLSGSDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQV AEI SPGSVLVSGRLLSDITRALPNKPVD +V+GNRVAL CG+ARFSLPT Sbjct 61 YEVSAEAQVAAEIASPGSVLVSGRLLSDITRALPNKPVDFYVDGNRVALNCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLP LPEETG LPA+LFAEAISQVAIAAGRDDTLPMLTGIRVEI G TVVLAA Sbjct 121 MAVEDYPTLPVLPEETGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGNTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL W+ASSPDIEAAVLVPAKTLAEAA+AG GS+VRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWAASSPDIEAAVLVPAKTLAEAARAGADGSEVRLSLGAGSGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLP EHTAVAT++VAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F++GS+RLSAGADDVGRAEEDL VD+ GEPLTIAFNPTYLTDGL+++ SERVSFGFTT G Sbjct 301 FSEGSLRLSAGADDVGRAEEDLAVDFVGEPLTIAFNPTYLTDGLAAVHSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S DD P G+GPF A+ TDYVYLLMPVRLPG Sbjct 361 KPALLRPASADDSPP---TGDGPFAALPTDYVYLLMPVRLPG 399 >gi|254773055|ref|ZP_05214571.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length=399 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/402 (87%), Positives = 369/402 (92%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT GL+DL FRL+RESFADAVSWVAK+LP+RPAVPVLSGVLL+G+D GLTISGFD Sbjct 1 MDAATTTAGLSDLKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQV AEI SPGSVLVSGRLLSDI RALPNKP+D +V+GNRVAL CG+ARFSLPT Sbjct 61 YEVSAEAQVAAEIASPGSVLVSGRLLSDIVRALPNKPIDFYVDGNRVALNCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLPEETG LPA+LFAEAI QVAIAAGRDDTLPMLTGIRVEI G+TVVLAA Sbjct 121 MAVEDYPTLPTLPEETGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA+SPDIEAAVLVPAKTLAEAA+ GI GSDVRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRLSLGAGAGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLP EHTAVAT++VAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F +GS+RLSAGADDVGRAEEDL VD+AGEPLTIAFNPTYLTDGL S+RSERVSFGFTT G Sbjct 301 FTEGSLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S DD P +G+GPF A+ TDYVYLLMPVRLPG Sbjct 361 KPALLRPASDDDSPP---SGSGPFSALPTDYVYLLMPVRLPG 399 >gi|240172092|ref|ZP_04750751.1| DNA polymerase III subunit beta [Mycobacterium kansasii ATCC 12478] Length=399 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/402 (87%), Positives = 367/402 (92%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT+ GLTDL FRL++ESFA+AVSWVAKNLP RPAVPVLSGVLLTGSD+GLTISGFD Sbjct 1 MDAATTQTGLTDLKFRLVKESFAEAVSWVAKNLPTRPAVPVLSGVLLTGSDDGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE QV AEI SPGSVLVSGRLLSDITRALPNKPVD +V+GNRVALTCGNARFSLPT Sbjct 61 YEVSAEVQVAAEIASPGSVLVSGRLLSDITRALPNKPVDFYVDGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLP++TG LP++LFAEAISQVAIAAGRDDTLPMLTGIRVEI G TVVLAA Sbjct 121 MAVEDYPTLPTLPDDTGTLPSDLFAEAISQVAIAAGRDDTLPMLTGIRVEIAGHTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL W+A SPDIEA+VLVPAKTLAEAAKA GSDVRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWTALSPDIEASVLVPAKTLAEAAKANSDGSDVRLSLGAGTGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLP EHTAVAT DVAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPVEHTAVATADVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FA+G++RLSAGADDVGRAEEDL VD+AGEPLTIAFNPTYLTDGL SL SERVSFGFTT G Sbjct 301 FAEGTLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSLHSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S +D A G+GPF AV TDYVYLLMPVRLPG Sbjct 361 KPALLRPASAED---ATPTGSGPFAAVPTDYVYLLMPVRLPG 399 >gi|41406100|ref|NP_958936.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431485|sp|Q9L7L6.1|DPO3B_MYCPA RecName: Full=DNA polymerase III subunit beta gi|6969268|gb|AAF33689.1| putative dnaN [Mycobacterium avium subsp. paratuberculosis] gi|41394448|gb|AAS02319.1| DnaN [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459817|gb|EGO38731.1| DNA polymerase III, beta subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=399 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/402 (87%), Positives = 370/402 (93%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT GL+DL FRL+RESFADAVSWVAK+LP+RPAVPVLSGVLL+G+D GLTISGFD Sbjct 1 MDAATTTAGLSDLKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQV AEI SPGSVLVSGRLLSDI RALPNKP+D +V+GNRVAL CG+ARFSLPT Sbjct 61 YEVSAEAQVAAEIASPGSVLVSGRLLSDIVRALPNKPIDFYVDGNRVALNCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLPEETG LPA+LFAEAI QVAIAAGRDDTLPMLTGIRVEI G+TVVLAA Sbjct 121 MAVEDYPTLPTLPEETGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA+SPDIEAAVLVPAKTLAEAA+ GI GSDVRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRLSLGAGAGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLP EHTAVAT++VAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F++GS+RLSAGADDVGRAEEDL VD+AGEPLTIAFNPTYLTDGL S+RSERVSFGFTT G Sbjct 301 FSEGSLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S DD P +G+GPF A+ TDYVYLLMPVRLPG Sbjct 361 KPALLRPASDDDSPP---SGSGPFSALPTDYVYLLMPVRLPG 399 >gi|183980037|ref|YP_001848328.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M] gi|183173363|gb|ACC38473.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M] Length=402 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/402 (86%), Positives = 364/402 (91%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTR GLTDL FRL+RESFADAVSWVAKNLP RPAVPVLSGVLLTGSD GLTISGFD Sbjct 1 MDAATTRAGLTDLKFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE +V AEI SPG+VLVSGRLLSDITRALPNKPVD +V+GNRVALTCGNARFSLPT Sbjct 61 YEVSAEVRVPAEIASPGTVLVSGRLLSDITRALPNKPVDFYVDGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLPE+TG LPAELF+EAI QVAIAAGRDDTLPMLTGIRVEI GE VVLAA Sbjct 121 MAVEDYPTLPTLPEDTGTLPAELFSEAIGQVAIAAGRDDTLPMLTGIRVEISGEKVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL W+A SPDIEAAVLVPAKTL EAAKA GS+VRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWNALSPDIEAAVLVPAKTLGEAAKANTDGSEVRLSLGAGMGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISG+GKRSTTRLLDAEFPKFRQLLP EHTAVA+ DVAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGDGKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADG +RLSAGADDVGRAEED+ V++AG+PLTIAFNPTYL DGL+SL SERVSFGFTT G Sbjct 301 FADGMLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S +DR V+G GPF AV TDYVYLLMPVRLPG Sbjct 361 KPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRLPG 402 >gi|254818680|ref|ZP_05223681.1| DNA polymerase III subunit beta [Mycobacterium intracellulare ATCC 13950] Length=399 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/402 (85%), Positives = 367/402 (92%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT GL+DL FRL+RESFADAVSWVAKNLP+RPAVPVLSGVLL+G+D+GLTISGFD Sbjct 1 MDAATTTAGLSDLKFRLVRESFADAVSWVAKNLPSRPAVPVLSGVLLSGTDDGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQV AEI SPGSVLVSGRLLSDI RALPNKP+D +V+GNRVAL CGNARFSLPT Sbjct 61 YEVSAEAQVAAEIASPGSVLVSGRLLSDIVRALPNKPIDFYVDGNRVALNCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLP LP+ETG LPA+LFAEAISQVAIAAGRDDTLPMLTGIRVEI G+TVVLAA Sbjct 121 MAVEDYPTLPALPDETGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA+SPDIEAAVLVPAKTLAEAA+AG G++VRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWSAASPDIEAAVLVPAKTLAEAARAGADGAEVRLSLGAGAGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLP EHTAVAT++VAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F++GS+RLSAGADDVGRAEEDL +D+AGEPLTIAFNPTYLTDGL S+ SERVSFGFTT G Sbjct 301 FSEGSLRLSAGADDVGRAEEDLAIDFAGEPLTIAFNPTYLTDGLGSVHSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP DD + G GPF A+ TDYVYLLMPVRLPG Sbjct 361 KPALLRPALDDD---SHPTGPGPFSALPTDYVYLLMPVRLPG 399 >gi|342862354|ref|ZP_08718995.1| DNA polymerase III subunit beta [Mycobacterium colombiense CECT 3035] gi|342130211|gb|EGT83539.1| DNA polymerase III subunit beta [Mycobacterium colombiense CECT 3035] Length=399 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/402 (85%), Positives = 364/402 (91%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT GL+DL FRL+RESFADAVSWVAKNLP+RPAVPVLSGVLL+G+D GLTISGFD Sbjct 1 MDAATTTAGLSDLKFRLVRESFADAVSWVAKNLPSRPAVPVLSGVLLSGTDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQV AEI SPGSVLVSGRLLSDI RALPNKP+D +V+GNRVAL CGNARFSLPT Sbjct 61 YEVSAEAQVAAEIASPGSVLVSGRLLSDIVRALPNKPIDFYVDGNRVALHCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLP LPEETG LPA++FAEAISQVAIAAGRDDTLPMLTGIRVEI G+TVVLAA Sbjct 121 MAVEDYPTLPALPEETGTLPADVFAEAISQVAIAAGRDDTLPMLTGIRVEISGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA+SPDIEAAVLVPAKTLAEAA+ G GS+VRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWSAASPDIEAAVLVPAKTLAEAARTGADGSEVRLSLGAGSGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISGNGKRSTTRLLDAEFPKFRQLLP EHTAVAT++VAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F++GS+RLSAGADDVGRAEEDL VD+ GEPLTIAFNPTYLTDGL S+ SERVSFGFTT G Sbjct 301 FSEGSLRLSAGADDVGRAEEDLAVDFVGEPLTIAFNPTYLTDGLGSVHSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP DD + G GP+ A+ TDYVYLLMPVRLPG Sbjct 361 KPALLRPALNDD---SHPTGTGPYSALPTDYVYLLMPVRLPG 399 >gi|118615921|ref|YP_904253.1| DNA polymerase III subunit beta [Mycobacterium ulcerans Agy99] gi|118568031|gb|ABL02782.1| DNA polymerase III (beta chain) DnaN [Mycobacterium ulcerans Agy99] Length=402 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/402 (86%), Positives = 361/402 (90%), Gaps = 0/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATTR GLTDL FRL+ ESFADAVSWVAKNLP RPAVPVLSGVLLTGSD GLTISGFD Sbjct 1 MDAATTRAGLTDLKFRLVPESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE +V AEI SPG+VLVSGRLLSDITRALP KPVD +V+GNRVALTCGNARFSLPT Sbjct 61 YEVSAEVRVPAEIASPGTVLVSGRLLSDITRALPKKPVDFYVDGNRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLPE+TG LPAELF+EAI QVAI AGRDDTLPMLTGIRVEI GE VVLAA Sbjct 121 MAVEDYPTLPTLPEDTGTLPAELFSEAIGQVAITAGRDDTLPMLTGIRVEISGEKVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL W+A SPDIEAAVLVPAKTL EAAKA GS+VRLSLG G GVGKDGLL Sbjct 181 TDRFRLAVRELTWNALSPDIEAAVLVPAKTLGEAAKANTDGSEVRLSLGAGMGVGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISG+GKRSTTRLLDAEFPKFRQLLP EHTAVA+ DVAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGDGKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FADG +RLSAGADDVGRAEED+ V++AG+PLTIAFNPTYL DGL+SL SERVSFGFTT G Sbjct 301 FADGMLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHSERVSFGFTTPG 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S +DR V+G GPF AV TDYVYLLMPVRLPG Sbjct 361 KPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRLPG 402 >gi|118465865|ref|YP_879305.1| DNA polymerase III subunit beta [Mycobacterium avium 104] gi|118167152|gb|ABK68049.1| DNA polymerase III, beta subunit [Mycobacterium avium 104] Length=382 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/385 (87%), Positives = 356/385 (93%), Gaps = 3/385 (0%) Query 18 LRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPG 77 +RESFADAVSWVAK+LP+RPAVPVLSGVLL+G+D GLTISGFDYEVSAEAQV AEI SPG Sbjct 1 MRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEIASPG 60 Query 78 SVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETG 137 SVLVSGRLLSDI RALPNKP+D +V+GNRVAL CG+ARFSLPTM VEDYPTLPTLPEETG Sbjct 61 SVLVSGRLLSDIVRALPNKPIDFYVDGNRVALNCGSARFSLPTMAVEDYPTLPTLPEETG 120 Query 138 LLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASS 197 LPA+LFAEAI QVAIAAGRDDTLPMLTGIRVEI G+TVVLAATDRFRLAVREL WSA+S Sbjct 121 TLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLAATDRFRLAVRELTWSAAS 180 Query 198 PDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAE 257 PDIEAAVLVPAKTLAEAA+ GI GSDVRLSLG G GVGKDGLLGISGNGKRSTTRLLDAE Sbjct 181 PDIEAAVLVPAKTLAEAARTGIDGSDVRLSLGAGAGVGKDGLLGISGNGKRSTTRLLDAE 240 Query 258 FPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGR 317 FPKFRQLLP EHTAVAT++VAEL EAIKLVALVADRGAQVRMEF++GS+RLSAGADDVGR Sbjct 241 FPKFRQLLPAEHTAVATINVAELTEAIKLVALVADRGAQVRMEFSEGSLRLSAGADDVGR 300 Query 318 AEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAG 377 AEEDL VD+AGEPLTIAFNPTYLTDGL S+RSERVSFGFTT GKPALLRP S DD P Sbjct 301 AEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRSERVSFGFTTPGKPALLRPASDDDSPP-- 358 Query 378 LNGNGPFPAVSTDYVYLLMPVRLPG 402 +G+GPF A+ TDYVYLLMPVRLPG Sbjct 359 -SGSGPFSALPTDYVYLLMPVRLPG 382 >gi|15826867|ref|NP_301130.1| DNA polymerase III subunit beta [Mycobacterium leprae TN] gi|221229345|ref|YP_002502761.1| DNA polymerase III subunit beta [Mycobacterium leprae Br4923] gi|1169395|sp|P46387.1|DPO3B_MYCLE RecName: Full=DNA polymerase III subunit beta gi|886326|gb|AAB53142.1| DNA polymerase III beta subunit [Mycobacterium leprae] gi|1262353|emb|CAA94709.1| DnaN [Mycobacterium leprae] gi|13092414|emb|CAC29510.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae] gi|219932452|emb|CAR70095.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae Br4923] Length=399 Score = 627 bits (1617), Expect = 1e-177, Method: Compositional matrix adjust. Identities = 326/403 (81%), Positives = 345/403 (86%), Gaps = 5/403 (1%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MD A T VG +DL F L RESFA AVSWVAK LP RP VPVLSGVLLTGSD+GLTISGFD Sbjct 1 MDLAKTNVGCSDLKFCLARESFASAVSWVAKYLPTRPTVPVLSGVLLTGSDSGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE QV AEI S GSVLVSGRLLSDITRALPNKPV +V+GNRVALTCG+ARFSLPT Sbjct 61 YEVSAEVQVAAEIASSGSVLVSGRLLSDITRALPNKPVHFYVDGNRVALTCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLP+ETG LP+++FAEAI QVAIAAGRD TLPMLTGIR+EI G+TVVLAA Sbjct 121 MAVEDYPTLPTLPDETGTLPSDVFAEAIGQVAIAAGRDYTLPMLTGIRIEISGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVRELKWS S D EA+VLVPAKTL E AKAG GS V LSLG G GVGKDGL Sbjct 181 TDRFRLAVRELKWSVLSSDFEASVLVPAKTLVEVAKAGTDGSGVCLSLGAGVGVGKDGLF 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GISG GKRSTTRLLDAEFPKFRQLLP EHTAVAT+DVAEL EAIKLVALVADRGAQVRME Sbjct 241 GISGGGKRSTTRLLDAEFPKFRQLLPAEHTAVATIDVAELTEAIKLVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F DG +RLSAGADDVGRAEEDL V + GEPLTIAFNP YLTDGL+S+ SERVSFGFTT Sbjct 301 FGDGILRLSAGADDVGRAEEDLAVAFTGEPLTIAFNPNYLTDGLASVHSERVSFGFTTPS 360 Query 361 KPALLRPVSGDD-RPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPALLRP S DD P +GPFPA+ TDYVYLLMPVRLPG Sbjct 361 KPALLRPTSNDDVHP----THDGPFPALPTDYVYLLMPVRLPG 399 >gi|333988642|ref|YP_004521256.1| DNA polymerase III subunit beta [Mycobacterium sp. JDM601] gi|333484610|gb|AEF34002.1| DNA polymerase III (beta chain) DnaN [Mycobacterium sp. JDM601] Length=398 Score = 625 bits (1611), Expect = 6e-177, Method: Compositional matrix adjust. Identities = 324/402 (81%), Positives = 353/402 (88%), Gaps = 4/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT GLTDL FRL R+ FADAV+WVAK+LPARP VP+L+GVLLTGSDNGLT+SGFD Sbjct 1 MDAATTNAGLTDLRFRLDRDDFADAVAWVAKSLPARPTVPLLAGVLLTGSDNGLTVSGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE Q+ AEI SPGSVLVSGRLLSDITRALP KPV+V VE RVALTCGNARFSLPT Sbjct 61 YEVSAEVQLAAEIASPGSVLVSGRLLSDITRALPAKPVEVQVEATRVALTCGNARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLPEETG+LPA+LFAEAI QVA+AAGRDDTLPMLTGIRVEI G TVVLAA Sbjct 121 MTVEDYPTLPTLPEETGMLPADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGNTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA +P EAAVLVPAKTLAEAAKA G++V L+LG GP VG +GLL Sbjct 181 TDRFRLAVRELTWSA-APGTEAAVLVPAKTLAEAAKASGDGTEVHLALGAGPSVGSEGLL 239 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GIS GKRSTTRLLDAEFPKFRQLLP+EH AVAT+ VAEL EAIK VALVADRGAQVRME Sbjct 240 GISSAGKRSTTRLLDAEFPKFRQLLPSEHLAVATIGVAELTEAIKRVALVADRGAQVRME 299 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 ++G++RLSAGA+DVGRAEEDL VD+AGEPLTIAFNPTYLTDGLSSL S +VS GFT Sbjct 300 LSEGTLRLSAGAEDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLSSLHSAKVSMGFTDPK 359 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 KPA+LRP +GDD P L+G GPFPAV +DYVYLLMPVRLPG Sbjct 360 KPAVLRP-AGDDEP--ALSGAGPFPAVPSDYVYLLMPVRLPG 398 >gi|120401030|ref|YP_950859.1| DNA polymerase III subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119953848|gb|ABM10853.1| DNA polymerase III, beta subunit [Mycobacterium vanbaalenii PYR-1] Length=398 Score = 622 bits (1605), Expect = 3e-176, Method: Compositional matrix adjust. Identities = 316/397 (80%), Positives = 348/397 (88%), Gaps = 3/397 (0%) Query 6 TRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSA 65 T GLTDL FRL RE FADAV+WVA+NLP+RP VPVL+GVLLTGSD GLTISGFDYEVSA Sbjct 5 TTAGLTDLKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTISGFDYEVSA 64 Query 66 EAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVED 125 E Q+ AEI SPGSVLVSGRLLSDI RALP KPVDV VEG RV+LTCG+ARFSLPTMPVED Sbjct 65 EVQIPAEIASPGSVLVSGRLLSDIVRALPAKPVDVSVEGTRVSLTCGSARFSLPTMPVED 124 Query 126 YPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFR 185 YPTLPTLP+ETG++ ++LFAEAI QVA+AAGRDDTLPMLTGIRVEI GE VVLAATDRFR Sbjct 125 YPTLPTLPDETGVVSSDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAATDRFR 184 Query 186 LAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGN 245 LAVREL WS + +EAAVLVPAKTLAEAAKAG G++V L+LG GP VGK+GLLGI Sbjct 185 LAVRELTWSTGAAGVEAAVLVPAKTLAEAAKAGTDGNEVHLALGAGPSVGKEGLLGIRSK 244 Query 246 GKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGS 305 GKRSTTRLLDAEFPKFRQLLPTEHTA+AT+ VAEL EAIK VALVADRGAQVRMEFADG Sbjct 245 GKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVADRGAQVRMEFADGV 304 Query 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALL 365 +RLSAGADDVGRAEEDL V+++G+PLTIAFNPTYLTDGLSSL +ERV+FGFTT +PA+L Sbjct 305 LRLSAGADDVGRAEEDLPVEFSGDPLTIAFNPTYLTDGLSSLHAERVTFGFTTPSRPAVL 364 Query 366 RPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 RP + DD G G+GPFPA TDYVYLLMPVRLPG Sbjct 365 RPAAEDD---GGAGGSGPFPAAQTDYVYLLMPVRLPG 398 >gi|126432615|ref|YP_001068306.1| DNA polymerase III subunit beta [Mycobacterium sp. JLS] gi|126232415|gb|ABN95815.1| DNA polymerase III, beta subunit [Mycobacterium sp. JLS] Length=398 Score = 619 bits (1597), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 317/402 (79%), Positives = 346/402 (87%), Gaps = 4/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MD T G TDL FRL+RE FADAV+WVA+NLP RP VPVL+GVLLTG D+GLTISGFD Sbjct 1 MDVVPTTAGHTDLKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE +V AEI SPGSVLVSGRLLSDIT+ALP KPVDV VEG RV+LTCG+ARFSLPT Sbjct 61 YEVSAEVRVAAEIASPGSVLVSGRLLSDITKALPAKPVDVSVEGTRVSLTCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYP LPTLP+ETG++ A+LFAEAI QVA+AAGRDDTLPMLTGIRVEI GE+VVLAA Sbjct 121 MAVEDYPALPTLPDETGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WS SSPD+EAAVLVPAKTLAEAAKAG G+DV L+LG G VGK+GLL Sbjct 181 TDRFRLAVRELTWSTSSPDVEAAVLVPAKTLAEAAKAGTDGTDVHLALGAGSAVGKEGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GI GKRSTTRLLDAEFPKFRQLLP+EHTAVAT+ VAEL EAIK VALVADRGAQVRME Sbjct 241 GIRSEGKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FAD +RLSAGADDVGRAEEDL V ++GEPLTIAFNPTYLTDGL SL SERV+FGFTT Sbjct 301 FADDVLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHSERVTFGFTTPS 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +PA+LRP +D G GPFPA+ TDYVYLLMPVRLPG Sbjct 361 RPAVLRPAGDEDTG----GGAGPFPALQTDYVYLLMPVRLPG 398 >gi|108796983|ref|YP_637180.1| DNA polymerase III subunit beta [Mycobacterium sp. MCS] gi|119866067|ref|YP_936019.1| DNA polymerase III subunit beta [Mycobacterium sp. KMS] gi|108767402|gb|ABG06124.1| DNA polymerase III, beta subunit [Mycobacterium sp. MCS] gi|119692156|gb|ABL89229.1| DNA polymerase III, beta subunit [Mycobacterium sp. KMS] Length=398 Score = 618 bits (1594), Expect = 5e-175, Method: Compositional matrix adjust. Identities = 317/402 (79%), Positives = 346/402 (87%), Gaps = 4/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MD T G TDL FRL+RE FADAV+WVA+NLP RP VPVL+GVLLTG D+GLTISGFD Sbjct 1 MDVVPTTAGHTDLKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE +V AEI SPGSVLVSGRLLSDIT+ALP KPVDV VEG RV+LTCG+ARFSLPT Sbjct 61 YEVSAEVRVVAEIASPGSVLVSGRLLSDITKALPAKPVDVSVEGTRVSLTCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYP LPTLP+ETG++ A+LFAEAI QVA+AAGRDDTLPMLTGIRVEI GE+VVLAA Sbjct 121 MAVEDYPALPTLPDETGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WS SSPD+EAAVLVPAKTLAEAAKAG G+DV L+LG G VGK+GLL Sbjct 181 TDRFRLAVRELTWSTSSPDVEAAVLVPAKTLAEAAKAGTDGTDVHLALGAGSAVGKEGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GI GKRSTTRLLDAEFPKFRQLLP+EHTAVAT+ VAEL EAIK VALVADRGAQVRME Sbjct 241 GIRSEGKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVADRGAQVRME 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FAD +RLSAGADDVGRAEEDL V ++GEPLTIAFNPTYLTDGL SL SERV+FGFTT Sbjct 301 FADDVLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHSERVTFGFTTPS 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +PA+LRP +D G GPFPA+ TDYVYLLMPVRLPG Sbjct 361 RPAVLRPAGDEDTG----GGAGPFPALQTDYVYLLMPVRLPG 398 >gi|118468117|ref|YP_884424.1| DNA polymerase III subunit beta [Mycobacterium smegmatis str. MC2 155] gi|1706495|sp|P52851.1|DPO3B_MYCSM RecName: Full=DNA polymerase III subunit beta gi|1321894|emb|CAA63249.1| dnaN [Mycobacterium smegmatis] gi|118169404|gb|ABK70300.1| DNA polymerase III, beta subunit [Mycobacterium smegmatis str. MC2 155] Length=397 Score = 608 bits (1567), Expect = 7e-172, Method: Compositional matrix adjust. Identities = 309/400 (78%), Positives = 346/400 (87%), Gaps = 5/400 (1%) Query 4 ATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEV 63 ATT GLTDL FR++RE FADAV+WVA++LP RP +PVL+GVLLTG+D GLTISGFDYEV Sbjct 2 ATTTAGLTDLKFRVVREDFADAVAWVARSLPTRPTIPVLAGVLLTGTDEGLTISGFDYEV 61 Query 64 SAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPV 123 SAE +V AEI S GSVLVSGRLLSDIT+ALP KPV+V VEG RV+LTCG+ARFSLPT+ V Sbjct 62 SAEVKVSAEIASAGSVLVSGRLLSDITKALPAKPVEVSVEGTRVSLTCGSARFSLPTLAV 121 Query 124 EDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDR 183 EDYP LP LPEETG++ ++LFAEAI QVA+AAGRDDTLPMLTGIRVEI GE+VVLAATDR Sbjct 122 EDYPALPALPEETGVIASDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGESVVLAATDR 181 Query 184 FRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGIS 243 FRLAVREL W ++ D+EAAVLVPAKTLAEAAKAG G+ V L+LG+G VGKDGLLGI Sbjct 182 FRLAVRELTWVTTAGDVEAAVLVPAKTLAEAAKAGTDGNQVHLALGSGASVGKDGLLGIR 241 Query 244 GNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFAD 303 GKRSTTRLLDAEFPKFRQLLP EHTAVAT+ VAEL EAIK VALVADRGAQ+RMEF+D Sbjct 242 SEGKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVADRGAQIRMEFSD 301 Query 304 GSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPA 363 +++LSAGADDVGRAEEDL VD+AGEPLTIAFNPTYLTDGL SL SERV+FGFTT +PA Sbjct 302 DTLKLSAGADDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLGSLHSERVTFGFTTPSRPA 361 Query 364 LLRPVSGDDRPVAGLN-GNGPFPAVSTDYVYLLMPVRLPG 402 +LRP DD G N G+GPFPA TDYVYLLMPVRLPG Sbjct 362 VLRPAGEDD----GANGGSGPFPAAKTDYVYLLMPVRLPG 397 >gi|145221420|ref|YP_001132098.1| DNA polymerase III subunit beta [Mycobacterium gilvum PYR-GCK] gi|315441698|ref|YP_004074577.1| DNA polymerase III subunit beta [Mycobacterium sp. Spyr1] gi|145213906|gb|ABP43310.1| DNA polymerase III, beta subunit [Mycobacterium gilvum PYR-GCK] gi|315260001|gb|ADT96742.1| DNA polymerase III, beta subunit [Mycobacterium sp. Spyr1] Length=398 Score = 600 bits (1547), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 313/402 (78%), Positives = 348/402 (87%), Gaps = 4/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 M+ ATT GL+DL FRL RE FADAV+WVA+NLP+RP VPVL+GVLLTGSD GLT+SGFD Sbjct 1 MNVATT-AGLSDLKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFD 59 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAE Q+ AEI SPGSVLVSGRLLSDI R+LP KPVDV VEG RV+LTCG+ARFSLPT Sbjct 60 YEVSAEVQIPAEIASPGSVLVSGRLLSDIVRSLPAKPVDVSVEGTRVSLTCGSARFSLPT 119 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLP+ETG++ A+LFAEAI QVA+AAGRDDTLPMLTGIRVEI GE VVLAA Sbjct 120 MAVEDYPTLPTLPDETGVVSADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGEKVVLAA 179 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA + +EAAVLVPAKTLAEAAKAG G++V L+LG GP VGK+GLL Sbjct 180 TDRFRLAVRELTWSAGAAGVEAAVLVPAKTLAEAAKAGTDGTEVHLALGQGPTVGKEGLL 239 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GI GKRSTTRLLDAEFPKFRQLLPTEHTA+AT+ VAEL EAIK VALVADRGAQVRME Sbjct 240 GIRSKGKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVADRGAQVRME 299 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 FAD +RLSAGADDVGRAEEDL V ++G+PLTIAFNP+YLTDGL SL +ERV+FGFTT Sbjct 300 FADDVLRLSAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHAERVTFGFTTPS 359 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +PA+LRP DD A G+GP+PA TDYVYLLMPVRLPG Sbjct 360 RPAVLRPAGDDDGSAA---GSGPYPAAQTDYVYLLMPVRLPG 398 >gi|169627110|ref|YP_001700759.1| DNA polymerase III subunit beta [Mycobacterium abscessus ATCC 19977] gi|169239077|emb|CAM60105.1| DNA polymerase III, beta subunit (DnaN) [Mycobacterium abscessus] Length=399 Score = 562 bits (1449), Expect = 3e-158, Method: Compositional matrix adjust. Identities = 280/402 (70%), Positives = 336/402 (84%), Gaps = 3/402 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MD A+ T L FR+ R+ FAD+V+WVA++LP+RP VPVL+GVLLT D GLT+SGFD Sbjct 1 MDLASPTAADTSLKFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSA+ +V AE+ + G+ LVSGRLLSDITR+LPNKPVDV +EG R+ ++CG+A+FSLP+ Sbjct 61 YEVSAQVKVPAEVAAAGNALVSGRLLSDITRSLPNKPVDVALEGTRLLISCGSAKFSLPS 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 MPVEDYP LP+LPEETG L A++F+EAI QVA+AAG+DDTLPMLTGIRVEI G+TVVLAA Sbjct 121 MPVEDYPALPSLPEETGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEINGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL W++ S + AAVLVPAKTL+EAAK+ GSDV+L+LG G +G +GLL Sbjct 181 TDRFRLAVRELNWTSGSGETSAAVLVPAKTLSEAAKSASSGSDVQLALGAGSAIGSEGLL 240 Query 241 GISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME 300 GI +GKRSTTRLLDAEFPKFRQLLPTEHTA+AT+ ++EL+EAIK VALVADRGAQ+R+E Sbjct 241 GIVSDGKRSTTRLLDAEFPKFRQLLPTEHTALATIAISELVEAIKRVALVADRGAQIRLE 300 Query 301 FADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG 360 F G +RLSAGADDVGRAEE+L V++ GEPLTIAFNPTYLTDGL SL S RV+FGFTT Sbjct 301 FEPGLLRLSAGADDVGRAEEELEVEFVGEPLTIAFNPTYLTDGLGSLHSNRVTFGFTTPS 360 Query 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +PA+LRP D + G+GPF A TDYVYLLMPVRLPG Sbjct 361 RPAVLRPADDDQ---SSPEGSGPFTAAQTDYVYLLMPVRLPG 399 >gi|296137753|ref|YP_003644996.1| DNA polymerase III subunit beta [Tsukamurella paurometabola DSM 20162] gi|296025887|gb|ADG76657.1| DNA polymerase III, beta subunit [Tsukamurella paurometabola DSM 20162] Length=396 Score = 522 bits (1344), Expect = 5e-146, Method: Compositional matrix adjust. Identities = 261/395 (67%), Positives = 319/395 (81%), Gaps = 5/395 (1%) Query 9 GLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQ 68 G + FR+ E FA++V+WVA++LP+RP VPVL GVLLT D+GLT+SGFDYEVSA+ + Sbjct 6 GSVGMKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTVSGFDYEVSAQVR 65 Query 69 VGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPT 128 VGAE+ G VLVSGRLL+DIT+ALPNKPVDV ++ RVA++CG+A+FSLPTMPVEDYP Sbjct 66 VGAEVADEGQVLVSGRLLADITKALPNKPVDVELDVTRVAISCGSAKFSLPTMPVEDYPQ 125 Query 129 LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAV 188 LP LP++TG + +FAEAISQVAIAAG+DDTLPMLTGIRVEI G+ VVLAATDRFRLAV Sbjct 126 LPELPQQTGAIERSMFAEAISQVAIAAGKDDTLPMLTGIRVEIEGQRVVLAATDRFRLAV 185 Query 189 RELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKR 248 RE W S D++AAVLVPAKTL+EAAK G S+V ++LG G VG DGLLG+ G +R Sbjct 186 REFDWQPQSGDVKAAVLVPAKTLSEAAKTFAGDSEVGIALGAGSAVGADGLLGVVGPDRR 245 Query 249 STTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRL 308 +TTRLLDA+FPKFRQLLP HTA+ATM++A L+EAIK VALVADRGAQVRMEF DG++RL Sbjct 246 TTTRLLDADFPKFRQLLPASHTAIATMEIAPLLEAIKRVALVADRGAQVRMEFGDGTLRL 305 Query 309 SAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP- 367 SAG DD G+AEE+L D+ GEPLTIAFNP YL DGL+++ ++ V+FGFTT +PA+LRP Sbjct 306 SAGGDDAGKAEEELPADFQGEPLTIAFNPGYLQDGLAAIHTDSVTFGFTTPSRPAVLRPT 365 Query 368 VSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 V +P + +G FPA + Y YLLMPVRLPG Sbjct 366 VENAFQP----DDSGAFPAPQSAYTYLLMPVRLPG 396 >gi|226303491|ref|YP_002763449.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4] gi|226182606|dbj|BAH30710.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4] Length=394 Score = 517 bits (1331), Expect = 1e-144, Method: Compositional matrix adjust. Identities = 258/395 (66%), Positives = 323/395 (82%), Gaps = 5/395 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L L FR+ RE FAD+V+WVA++LP+RP VPVL GVLL ++ GLT+SGFDYEVSA+ +V Sbjct 3 LGSLKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTVSGFDYEVSAQVRV 62 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 A++ + G LVSGRLL+DIT++LPNKPVDV +EG RV ++CG+A+FSLPTMPVEDYP L Sbjct 63 SADVTTAGQALVSGRLLADITKSLPNKPVDVTLEGTRVLISCGSAKFSLPTMPVEDYPQL 122 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 PTLP+++G +P +LF+EAISQVA+AAG+DDTLPMLTGIRVEI ++VLAATDRFRLAVR Sbjct 123 PTLPQQSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVLAATDRFRLAVR 182 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAK--AGIGGSDVRLSLGTGPGVGKDGLLGISGNGK 247 EL+W+ ++PD++AAVL+PAKTL+E+AK AG S V L+LG+G +G DGLLGI +G+ Sbjct 183 ELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLGIVNDGR 242 Query 248 RSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVR 307 R+TTRLLDAEFPKFRQLLP +HTA+AT++V LIEAIK VALVA+RGAQVRM+F+ + Sbjct 243 RTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVAERGAQVRMQFSADGLL 302 Query 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 LSAG DD GRAEE L + GE LTIAFNP YL DGL+SL SE V FGFTT +PA+LRP Sbjct 303 LSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHSENVLFGFTTPSRPAVLRP 362 Query 368 VSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + ++ P A +GN F A S++Y YLLMPVRLPG Sbjct 363 -AAEEEPTADESGN--FAAPSSEYTYLLMPVRLPG 394 >gi|229491191|ref|ZP_04385019.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121] gi|229321929|gb|EEN87722.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121] Length=403 Score = 517 bits (1331), Expect = 1e-144, Method: Compositional matrix adjust. Identities = 258/395 (66%), Positives = 323/395 (82%), Gaps = 5/395 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L L FR+ RE FAD+V+WVA++LP+RP VPVL GVLL ++ GLT+SGFDYEVSA+ +V Sbjct 12 LGSLKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTVSGFDYEVSAQVRV 71 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 A++ + G LVSGRLL+DIT++LPNKPVDV +EG RV ++CG+A+FSLPTMPVEDYP L Sbjct 72 SADVTTAGQALVSGRLLADITKSLPNKPVDVTLEGTRVLISCGSAKFSLPTMPVEDYPQL 131 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 PTLP+++G +P +LF+EAISQVA+AAG+DDTLPMLTGIRVEI ++VLAATDRFRLAVR Sbjct 132 PTLPQQSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVLAATDRFRLAVR 191 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAK--AGIGGSDVRLSLGTGPGVGKDGLLGISGNGK 247 EL+W+ ++PD++AAVL+PAKTL+E+AK AG S V L+LG+G +G DGLLGI +G+ Sbjct 192 ELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLGIVNDGR 251 Query 248 RSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVR 307 R+TTRLLDAEFPKFRQLLP +HTA+AT++V LIEAIK VALVA+RGAQVRM+F+ + Sbjct 252 RTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVAERGAQVRMQFSADGLL 311 Query 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 LSAG DD GRAEE L + GE LTIAFNP YL DGL+SL SE V FGFTT +PA+LRP Sbjct 312 LSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHSENVLFGFTTPSRPAVLRP 371 Query 368 VSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + ++ P A +GN F A S++Y YLLMPVRLPG Sbjct 372 -AAEEEPTADESGN--FAAPSSEYTYLLMPVRLPG 403 >gi|111020656|ref|YP_703628.1| DNA polymerase III subunit beta [Rhodococcus jostii RHA1] gi|110820186|gb|ABG95470.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus jostii RHA1] Length=394 Score = 515 bits (1327), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 262/396 (67%), Positives = 322/396 (82%), Gaps = 7/396 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L L FR+ RE FAD+V+WVA++LP+RP VPVL GVLL ++ GLT+SGFDYEVSA+ +V Sbjct 3 LGSLKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRV 62 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 AE+ S G VLVSG+LL+DIT++LPNKPVDV +EG RV +TCG+A+FSLPTMPVEDYP L Sbjct 63 AAEVGSAGQVLVSGKLLADITKSLPNKPVDVTLEGTRVLITCGSAKFSLPTMPVEDYPQL 122 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 P LP++TG +PA++F+EAISQVA+AAG+DDTLPMLTGIRVEI +VLAATDRFRLAVR Sbjct 123 PQLPQQTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVLAATDRFRLAVR 182 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAK--AGIGGSDVRLSLGTGPGVGKDGLLGISGNGK 247 EL+WS ++PD AAVL+PAKTL+E+AK AG S V L+LG+G VG DGLLGI +G+ Sbjct 183 ELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIVNDGR 242 Query 248 RSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVR 307 R+TTRLLDAEFPKFRQLLP+EHTA+AT+++A L+EAIK VALVA+RGAQVR++F+ + Sbjct 243 RTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVAERGAQVRLQFSTEGLL 302 Query 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 LSAG DD GRAEE L + GEPLTIAFNP YL DGLSSL SE+V FGFTT +PA+LRP Sbjct 303 LSAGGDDAGRAEEGLNAVFQGEPLTIAFNPGYLIDGLSSLHSEQVLFGFTTPSRPAVLRP 362 Query 368 VSGDD-RPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + D+ P + +G F A + Y YLLMPVRLPG Sbjct 363 ATEDEIEP----DDSGNFAAPESAYTYLLMPVRLPG 394 >gi|343928736|ref|ZP_08768181.1| DNA polymerase III beta subunit [Gordonia alkanivorans NBRC 16433] gi|343761485|dbj|GAA15107.1| DNA polymerase III beta subunit [Gordonia alkanivorans NBRC 16433] Length=389 Score = 512 bits (1319), Expect = 3e-143, Method: Compositional matrix adjust. Identities = 259/392 (67%), Positives = 321/392 (82%), Gaps = 5/392 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 + FR+ R+ FAD+V+WVA++LP+RP VPVL V+L + GLT+SGFDYEVSA+ +GAE Sbjct 1 MKFRVARDEFADSVAWVARSLPSRPPVPVLGCVVLNVGETGLTVSGFDYEVSAQENLGAE 60 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + PG VLVSGRLL+DIT+ALPNKPVDV ++G+RVA+TCG+A+FSLPTMPVEDYP LP + Sbjct 61 VAEPGQVLVSGRLLADITKALPNKPVDVTLDGSRVAITCGSAKFSLPTMPVEDYPQLPDV 120 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 P TG +P++LFAEAISQVA+AAG+DDTLPMLTG+RVEI G +VVLAATDRFRLAVREL+ Sbjct 121 PAITGTIPSQLFAEAISQVAVAAGKDDTLPMLTGVRVEIEGNSVVLAATDRFRLAVRELQ 180 Query 193 WSASSPDIEAAVLVPAKTLAEAAK-AGIGGSD-VRLSLGTGPGVGKDGLLGISGNGKRST 250 W S PD + AVLVPAKTL+E+AK AG G+ V L+ G+G +G DG+LGI G K++T Sbjct 181 WEPSDPDTKGAVLVPAKTLSESAKTAGAEGTGVVSLAFGSGAAIGSDGILGILGETKKTT 240 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFPKFRQLLP HTAVAT+D A LIEAI+ VALVA+RGAQVRMEF +GSV L+A Sbjct 241 TRLLDAEFPKFRQLLPASHTAVATIDSAPLIEAIRRVALVAERGAQVRMEFTEGSVLLTA 300 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 G D+ G+AEE+L V + GEPLTIAFNP YL DGLS++ ++ V FGFTT +PA+LRP SG Sbjct 301 GGDEAGKAEEELPVSFHGEPLTIAFNPGYLQDGLSAINADSVDFGFTTPSRPAVLRPASG 360 Query 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +D PVA + +G + A + + YLLMPVRLPG Sbjct 361 ED-PVA--DESGAYVAPESAFSYLLMPVRLPG 389 >gi|226362896|ref|YP_002780676.1| DNA polymerase III subunit beta [Rhodococcus opacus B4] gi|226241383|dbj|BAH51731.1| DNA polymerase III beta subunit [Rhodococcus opacus B4] Length=394 Score = 511 bits (1316), Expect = 7e-143, Method: Compositional matrix adjust. Identities = 260/396 (66%), Positives = 321/396 (82%), Gaps = 7/396 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L L FR+ RE FAD+V+WVA++LP+RP VPVL GVLL ++ GLT+SGFDYEVSA+ +V Sbjct 3 LGSLKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRV 62 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 AE+ S G VLVSG+LL+DIT++LPNKPVDV +EG RV +TCG+A+FSLPTMPVEDYP L Sbjct 63 AAEVGSAGQVLVSGKLLADITKSLPNKPVDVTLEGTRVLITCGSAKFSLPTMPVEDYPQL 122 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 P LP++TG +PA++F+EAISQVA+AAG+DDTLPMLTGIRVEI +VLAATDRFRLAVR Sbjct 123 PQLPQQTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVLAATDRFRLAVR 182 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAK--AGIGGSDVRLSLGTGPGVGKDGLLGISGNGK 247 EL+WS ++PD AAVL+PAKTL+E+AK AG S V L+LG+G VG DGLLGI +G+ Sbjct 183 ELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIVNDGR 242 Query 248 RSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVR 307 R+TTRLLDAEFPKFRQLLP+EHTA+AT+++A L+EAIK VALVA+RGAQVR++F+ + Sbjct 243 RTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVAERGAQVRLQFSTEGLL 302 Query 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 LSAG DD GRAEE L + GE LTIAFNP YL DGLSSL SE+V FGFTT +PA+LRP Sbjct 303 LSAGGDDAGRAEEGLNAVFQGESLTIAFNPGYLIDGLSSLHSEQVLFGFTTPSRPAVLRP 362 Query 368 VSGDD-RPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + ++ P + +G F A + Y YLLMPVRLPG Sbjct 363 ATEEEIEP----DDSGNFAAPESAYTYLLMPVRLPG 394 >gi|325677519|ref|ZP_08157183.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC 33707] gi|325551766|gb|EGD21464.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC 33707] Length=394 Score = 509 bits (1312), Expect = 3e-142, Method: Compositional matrix adjust. Identities = 261/396 (66%), Positives = 320/396 (81%), Gaps = 7/396 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L + FR+ RE FAD+V+WVA++LP+RP VPVL GVLL + GLT+SGFDYEVSA+ +V Sbjct 3 LGSMKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRV 62 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 AE+ + G VLVSG+LL+DITRALPNKPVDV V+G RV + CG+A+FSLPTMPVEDYP L Sbjct 63 SAEVTTTGQVLVSGKLLADITRALPNKPVDVTVDGTRVLIACGSAKFSLPTMPVEDYPQL 122 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 PTLP++TG LP +LF+EA+SQVA+AAG+DDTLPMLTGIRVEI G VVLAATDRFRLAVR Sbjct 123 PTLPQQTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVLAATDRFRLAVR 182 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAKAGIGG---SDVRLSLGTGPGVGKDGLLGISGNG 246 +L+W ++ D+ AAVLVPA+TL+E+AK +GG S V L+LG G VG +G+LGI +G Sbjct 183 KLEWMPTAGDVTAAVLVPARTLSESAKT-LGGNTLSPVELALGAGASVGTEGMLGIVADG 241 Query 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSV 306 +R+TTRLLDAEFPKFRQLLP EHTA+AT+ VA L++AIK VALVA+RGAQVR+EF + Sbjct 242 RRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVAERGAQVRLEFNSEGL 301 Query 307 RLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLR 366 LSAG DD GRAEE L D+ GEPL IAFNP YL DGL+SL SERV+FGFTT +PA+LR Sbjct 302 VLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHSERVTFGFTTPSRPAVLR 361 Query 367 PVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 P +G++ G +G F A +DY+YLLMPVRLPG Sbjct 362 P-AGEEELERGESGT--FAAPESDYIYLLMPVRLPG 394 >gi|312137516|ref|YP_004004852.1| DNA polymerase III beta subunit [Rhodococcus equi 103S] gi|311886855|emb|CBH46163.1| DNA polymerase III beta subunit [Rhodococcus equi 103S] Length=394 Score = 508 bits (1309), Expect = 6e-142, Method: Compositional matrix adjust. Identities = 260/396 (66%), Positives = 320/396 (81%), Gaps = 7/396 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L + FR+ RE FAD+V+WVA++LP+RP VPVL GVLL + GLT+SGFDYEVSA+ +V Sbjct 3 LGSMKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRV 62 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 AE+ + G VLVSG+LL+DITRALPNKPVDV V+G RV + CG+A+FSLPTMPVEDYP L Sbjct 63 SAEVTTTGQVLVSGKLLADITRALPNKPVDVTVDGTRVLIACGSAKFSLPTMPVEDYPQL 122 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 PTLP++TG LP +LF+EA+SQVA+AAG+DDTLPMLTGIRVEI G VVLAATDRFRLAVR Sbjct 123 PTLPQQTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVLAATDRFRLAVR 182 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSD---VRLSLGTGPGVGKDGLLGISGNG 246 +L+W ++ D+ AAVLVPA+TL+E+AK +GG+ V L+LG G VG +G+LGI +G Sbjct 183 KLEWMPTAGDVTAAVLVPARTLSESAKT-LGGNTLAPVELALGAGASVGTEGMLGIVADG 241 Query 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSV 306 +R+TTRLLDAEFPKFRQLLP EHTA+AT+ VA L++AIK VALVA+RGAQVR+EF + Sbjct 242 RRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVAERGAQVRLEFNSEGL 301 Query 307 RLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLR 366 LSAG DD GRAEE L D+ GEPL IAFNP YL DGL+SL SERV+FGFTT +PA+LR Sbjct 302 VLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHSERVTFGFTTPSRPAVLR 361 Query 367 PVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 P +G++ G +G F A +DY+YLLMPVRLPG Sbjct 362 P-AGEEELERGESGT--FAAPESDYIYLLMPVRLPG 394 >gi|262200048|ref|YP_003271256.1| DNA polymerase III subunit beta [Gordonia bronchialis DSM 43247] gi|262083395|gb|ACY19363.1| DNA polymerase III, beta subunit [Gordonia bronchialis DSM 43247] Length=388 Score = 507 bits (1306), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 261/392 (67%), Positives = 317/392 (81%), Gaps = 6/392 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 + FR+ R+ FAD+V+WVA++LP+RP VPVL V+L G+D+GLTISGFDYEVSA+ + AE Sbjct 1 MKFRVARDEFADSVAWVARSLPSRPPVPVLGCVVL-GADDGLTISGFDYEVSAQESIAAE 59 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 I PG VLVSGRLL+DIT+ALPNKPVDV ++G RVA+ CG+A+FSLPTMPVEDYP LP + Sbjct 60 IAEPGQVLVSGRLLADITKALPNKPVDVTLDGARVAIACGSAKFSLPTMPVEDYPQLPDV 119 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 P +G +P +LFAEAISQVAIAAGRDDTLPMLTG+RVEI G TVVLAATDRFRLAVREL+ Sbjct 120 PAISGTIPTQLFAEAISQVAIAAGRDDTLPMLTGVRVEIEGSTVVLAATDRFRLAVRELQ 179 Query 193 WSASSPDIEAAVLVPAKTLAEAAK-AGIGGSD-VRLSLGTGPGVGKDGLLGISGNGKRST 250 W + PD AVLVPAKTL+E+AK AG G+ V L+ G G +G DG+LGI G KR+T Sbjct 180 WEPTDPDTSGAVLVPAKTLSESAKTAGAEGTGVVSLAFGNGSAIGNDGILGILGETKRTT 239 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFPKFRQLLP HTA+AT+D A LIEAIK VALVA+RGAQVR+EF +GSV L+A Sbjct 240 TRLLDAEFPKFRQLLPASHTAIATIDSAPLIEAIKRVALVAERGAQVRLEFGEGSVLLTA 299 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 G D+ G+AEE+L V +AGE LTIAFNP YL DGLS++ ++ V FGFTT +PA+LRP SG Sbjct 300 GGDEAGKAEEELPVQFAGEALTIAFNPGYLLDGLSAINADTVDFGFTTPSRPAVLRPSSG 359 Query 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 ++P A + +G F A + + YLLMPVRLPG Sbjct 360 -EQPAA--DESGAFAAPESAFTYLLMPVRLPG 388 >gi|54021966|ref|YP_116208.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152] gi|54013474|dbj|BAD54844.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM 10152] Length=386 Score = 504 bits (1299), Expect = 7e-141, Method: Compositional matrix adjust. Identities = 254/390 (66%), Positives = 312/390 (80%), Gaps = 4/390 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 + FR+ RE FA++V+WVA++LP+RP VPVL GVLL +++GLT+SGFDYEVSA+ +V AE Sbjct 1 MKFRVAREDFAESVAWVARSLPSRPPVPVLGGVLLVANEDGLTVSGFDYEVSAQMRVAAE 60 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + PG VLVSGRLL+DIT+AL NKPVDV V+G RV +TCG+A+FSLPTMPVEDYP LP + Sbjct 61 VAGPGEVLVSGRLLADITKALSNKPVDVSVDGTRVLITCGSAKFSLPTMPVEDYPQLPEV 120 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 P++TG L ++FAEA+ QVA+AAGRDDTLPMLTGIRVEI G VVLAATDRFRLAVR ++ Sbjct 121 PQQTGELSVDVFAEAVGQVAVAAGRDDTLPMLTGIRVEIEGSQVVLAATDRFRLAVRHIE 180 Query 193 WSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTR 252 W+ + PDIE AVL+PA+TL+EAAK +G SD + L G G G DGLLGI G+R+TTR Sbjct 181 WTPARPDIETAVLIPARTLSEAAKT-LGASDAPVQLSLGTGAGSDGLLGIVNAGRRTTTR 239 Query 253 LLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGA 312 LLDAEFPKFRQLLP EHT+VAT+ VA L EAIK VALVA+RGAQVR+EF+ + LSAG Sbjct 240 LLDAEFPKFRQLLPKEHTSVATLAVAALTEAIKRVALVAERGAQVRLEFSTEGLLLSAGG 299 Query 313 DDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDD 372 DD GRAEE L D+ GEPLTIAFNP YL DGLS+L ++RV+FGFTT +PA+L P S ++ Sbjct 300 DDAGRAEEWLEADFRGEPLTIAFNPGYLVDGLSALHADRVTFGFTTPSRPAVLLPASEEE 359 Query 373 RPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +G F A++ +Y YLLMPVRLPG Sbjct 360 PQTL---DSGAFAALTGNYTYLLMPVRLPG 386 >gi|333917681|ref|YP_004491262.1| DNA polymerase III subunit beta [Amycolicicoccus subflavus DQS3-9A1] gi|333479902|gb|AEF38462.1| DNA polymerase III beta subunit [Amycolicicoccus subflavus DQS3-9A1] Length=530 Score = 493 bits (1270), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 245/395 (63%), Positives = 313/395 (80%), Gaps = 4/395 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 L +L FR+ R+ F+D VSWVA+NLP+RPAVPVL GVLL +++GLTISGFDYE SA+ V Sbjct 138 LANLKFRVARDDFSDGVSWVARNLPSRPAVPVLGGVLLDATESGLTISGFDYETSAQITV 197 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 AEI G LVSGRLL+DIT+ALP +PVDV V+G RV + CGNA+FSLPTMPVEDYP L Sbjct 198 PAEIAGVGRALVSGRLLADITKALPARPVDVDVDGARVHIICGNAKFSLPTMPVEDYPQL 257 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 PT+PE TG LPAE+F E+I+QVA+AAG+DDTLPMLTGIRVEI G+ VVLAATDRFRLAVR Sbjct 258 PTVPEVTGSLPAEVFTESIAQVAVAAGKDDTLPMLTGIRVEISGDAVVLAATDRFRLAVR 317 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAK--AGIGGSDVRLSLGTGPGVGKDGLLGISGNGK 247 ++W+ + E +VLVPAKTL+EA K G G + V+L+LGTG + +GL+G+ G+G+ Sbjct 318 TIEWTPEASGTETSVLVPAKTLSEAGKTLGGAGNATVKLALGTGASLASEGLIGVLGSGR 377 Query 248 RSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVR 307 R+T+RLLDAEFPKFRQLLPT HTA+A +++A L++AIK VAL+A+RGAQVRM+F++ ++ Sbjct 378 RTTSRLLDAEFPKFRQLLPTSHTALAVVEIAPLVDAIKRVALLAERGAQVRMDFSEDGLQ 437 Query 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 LSAG DD G+AEE L V++ G PL IAFNPTYL DGL++L +E+V GFT +PA+L+P Sbjct 438 LSAGGDDAGKAEESLPVEFVGTPLVIAFNPTYLLDGLNALHTEKVVLGFTLPSRPAVLQP 497 Query 368 VSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 D + +G +PA+ + Y YLLMPVRLPG Sbjct 498 APADFEVPS--EADGSYPAIDSQYTYLLMPVRLPG 530 >gi|326383910|ref|ZP_08205594.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL B-59395] gi|326197369|gb|EGD54559.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL B-59395] Length=400 Score = 469 bits (1206), Expect = 5e-130, Method: Compositional matrix adjust. Identities = 236/403 (59%), Positives = 311/403 (78%), Gaps = 16/403 (3%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 + FR++R+ FADAV+WVA++LP+RP VPVL V+LT + GL ++GFDYEVSA + AE Sbjct 1 MKFRVVRDEFADAVAWVARSLPSRPPVPVLGCVVLTADEFGLQVAGFDYEVSATQVISAE 60 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + G LVSGRLL+DIT+ALPNKPVDV ++G+RVA++CG+A+FSLPTMPVEDYP LP + Sbjct 61 VSESGKALVSGRLLADITKALPNKPVDVTIDGSRVAISCGSAKFSLPTMPVEDYPELPEV 120 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 P+ TG +PA+LF+EA+SQVAIAAG+DDTLPMLTG+RVEI G+ VVLAATDRFRLAVREL+ Sbjct 121 PQNTGSVPADLFSEAVSQVAIAAGKDDTLPMLTGVRVEIEGDKVVLAATDRFRLAVRELQ 180 Query 193 WSASSPDIEAAVLVPAKTLAEAAKAGIGGS--DVRLSLGTGPGVGKDGLLGISGNGKRST 250 W + A LVPAKTL+EAAK+ S +V L+ G +G +G+LGI+ N K++T Sbjct 181 WLPADAGASGAALVPAKTLSEAAKSAGADSTGNVELAFGAVHAIGSEGMLGITNNAKKTT 240 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFPKFRQL P HT++AT++ A LIE+IK V+LVA+RGAQVR++F+ SV L+A Sbjct 241 TRLLDAEFPKFRQLFPANHTSIATVESAPLIESIKRVSLVAERGAQVRLDFSSDSVLLTA 300 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTT-----------A 359 G D+ G+AEE+L V + GEP+ IAFNP YL DGL+++ +E V FGFT A Sbjct 301 GGDEAGKAEEELPVQFYGEPIIIAFNPHYLLDGLAAIGTETVEFGFTNPEPDGSGQRRAA 360 Query 360 GKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +PA+LRP +GD+ P A + +G + A ++++ YLLMPVRLPG Sbjct 361 IRPAVLRPSNGDE-PAA--DESGAYTASASEFSYLLMPVRLPG 400 >gi|319949430|ref|ZP_08023491.1| DNA polymerase III subunit beta [Dietzia cinnamea P4] gi|319436892|gb|EFV91951.1| DNA polymerase III subunit beta [Dietzia cinnamea P4] Length=391 Score = 458 bits (1179), Expect = 7e-127, Method: Compositional matrix adjust. Identities = 232/393 (60%), Positives = 294/393 (75%), Gaps = 4/393 (1%) Query 10 LTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQV 69 +TD TFR+ RE FAD+V+WVA+ LP+RP+VP+L GVLL +D+GLTISGFDYE SA+ V Sbjct 3 ITDPTFRVTREDFADSVAWVARTLPSRPSVPILGGVLLE-ADSGLTISGFDYETSAQVSV 61 Query 70 GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTL 129 AE+ PGS LVSGRLL+DI RALP++PV+V V ++ +TCG+A+F+LPTMPVEDYP L Sbjct 62 PAEVSEPGSTLVSGRLLADIARALPDRPVEVVVTAQKMYITCGSAKFTLPTMPVEDYPQL 121 Query 130 PTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVR 189 P +PE TG + F+EA+ QV +AAG+DDTLPMLTGIR+EI G V L ATDRFRLA+R Sbjct 122 PAMPEVTGSAEVDAFSEAVGQVVVAAGKDDTLPMLTGIRMEIEGTRVTLIATDRFRLAIR 181 Query 190 ELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRS 249 E W + D+ VL+PAK L+E ++ G V LSLG G VG +G+LG+ +G+R+ Sbjct 182 EFDWEPAREDVTVEVLIPAKALSEVTRSAGHGGRVDLSLGAGSNVGAEGILGVLVSGQRT 241 Query 250 TTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLS 309 TTRLLDAEFPK RQLLP +HT+VA ++V L++AIK VALVADRG QVRM F++G + LS Sbjct 242 TTRLLDAEFPKVRQLLPPQHTSVAVVEVDALVQAIKRVALVADRGVQVRMAFSEGELALS 301 Query 310 AGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVS 369 AG DD +A E L VD+ GEPLTIAFNP YL DGL S+ S RV+FGFT +PA+LRP + Sbjct 302 AGGDDAAQANESLPVDFVGEPLTIAFNPGYLLDGLGSIHSARVAFGFTQPSRPAVLRP-A 360 Query 370 GDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + P G +G V +D+ YLLMPVRLPG Sbjct 361 PEALPEPG--ADGAIAPVESDHTYLLMPVRLPG 391 >gi|54025936|ref|YP_120178.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152] gi|54017444|dbj|BAD58814.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM 10152] Length=381 Score = 448 bits (1153), Expect = 6e-124, Method: Compositional matrix adjust. Identities = 233/390 (60%), Positives = 293/390 (76%), Gaps = 11/390 (2%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 + FR+ R ADA +WVA++LP+RP VPVL G L D+GLTIS FDYEVSA+ ++ AE Sbjct 3 IRFRVARGDLADAATWVARSLPSRPPVPVLGGAHLRADDDGLTISVFDYEVSAQMRIAAE 62 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + G VLVSG+LL+DIT+ALPNKPVD+ +G+RV + CG+A+FSLPTMPVEDYP LP + Sbjct 63 VAHDGEVLVSGKLLADITKALPNKPVDITFDGSRVLIACGSAKFSLPTMPVEDYPKLPDV 122 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 P +G L A+LFA A+SQVA+AAGRDDTLPMLTGIRVEI G V LAATDR+RLAVR L+ Sbjct 123 PARSGELAADLFATAVSQVAVAAGRDDTLPMLTGIRVEIDGAEVTLAATDRYRLAVRTLE 182 Query 193 WSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTR 252 WS + P +E VLVPA+TLAEA KA + RL++ D + G+ +R+TTR Sbjct 183 WSPTDPSVETQVLVPARTLAEAVKALESAAPARLAI-------DDSMFGLVNARRRTTTR 235 Query 253 LLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGA 312 LLDAEFPKFRQLLP EHT+VAT+ V +L++AIK VALVA+RGAQVR+EF++ + LSAG Sbjct 236 LLDAEFPKFRQLLPKEHTSVATVFVPDLVDAIKRVALVAERGAQVRLEFSEDGLLLSAGG 295 Query 313 DDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDD 372 DD GRAEE + ++ GEPLTIAFNP YL DGL++L S V+ GFTT +PA+L P SGD Sbjct 296 DDAGRAEEAVPAEFRGEPLTIAFNPGYLMDGLTALHSTSVTLGFTTPTRPAVLVP-SGD- 353 Query 373 RPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 V +G F A+S +VY+LMPVR+PG Sbjct 354 --VEVKESSGGFAALSGPFVYMLMPVRIPG 381 >gi|134096622|ref|YP_001102283.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005724|ref|ZP_06563697.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133909245|emb|CAL99357.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] Length=374 Score = 445 bits (1145), Expect = 5e-123, Method: Compositional matrix adjust. Identities = 228/392 (59%), Positives = 293/392 (75%), Gaps = 20/392 (5%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSD-NGLTISGFDYEVSAEAQVGA 71 + R+ R+ ADAV+WVA++LP+RP VPVL GVLL S LTISGFDYEVSA+ + A Sbjct 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDASSGEALTISGFDYEVSAQVTIDA 60 Query 72 EIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPT 131 I S G LVSGRLL+DIT+ALPN+PV++ V+G+RV +TCG++RFSLPTMPVEDYP LP Sbjct 61 SIDSTGRTLVSGRLLADITKALPNRPVEITVDGSRVTITCGSSRFSLPTMPVEDYPELPA 120 Query 132 LPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVREL 191 +P+ G +P +LF+EA+SQVA+AAG+DDTLPMLTG+R+EI + + + ATDRFRLA+RE Sbjct 121 MPDHAGSVPGDLFSEAVSQVAVAAGKDDTLPMLTGVRMEINADRLTMVATDRFRLAMREF 180 Query 192 KWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRST 250 W + + +VLVPAKTL+++AK G GG+ V +SL +G DGLLG+SGN +RST Sbjct 181 TWEPGTTIEDTSVLVPAKTLSDSAKTLGTGGNKVEISLASG-----DGLLGLSGNSRRST 235 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFPK+RQLLP+E A +DVA L+EAIK V+LVA+RG QVR+EF+D +RL+A Sbjct 236 TRLLDAEFPKYRQLLPSESAVTAVVDVAPLVEAIKRVSLVAERGTQVRLEFSDAGLRLTA 295 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 G DD G AEE+L V+ GE LTIAFNP YL DGL +L+S+R FTT+ +PA+L+PV Sbjct 296 GGDDEGSAEEELPVELVGEALTIAFNPAYLLDGLGALKSDRAQMLFTTSNRPAVLKPVGE 355 Query 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 D V+ Y+YLLMPVRLPG Sbjct 356 DGE-------------VAEGYLYLLMPVRLPG 374 >gi|3953450|gb|AAC83392.1| DnaN [Mycobacterium avium] Length=258 Score = 432 bits (1110), Expect = 7e-119, Method: Compositional matrix adjust. Identities = 219/258 (85%), Positives = 234/258 (91%), Gaps = 0/258 (0%) Query 1 MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD 60 MDAATT GL+DL FRL+RESFADAVSWVAK+LP+RPAVPVLSGVLL+G+D GLTISGFD Sbjct 1 MDAATTTAGLSDLKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFD 60 Query 61 YEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT 120 YEVSAEAQV AEI SPGSVLVSGRLLSDI RALPNKP+D +V+GN+VAL CG+ARFSLPT Sbjct 61 YEVSAEAQVAAEIASPGSVLVSGRLLSDIVRALPNKPIDFYVDGNQVALNCGSARFSLPT 120 Query 121 MPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 M VEDYPTLPTLPEETG LPA+LFAEAI QVAIAAGRDDTLPMLTGIRVEI G+TVVLAA Sbjct 121 MAVEDYPTLPTLPEETGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLAA 180 Query 181 TDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL 240 TDRFRLAVREL WSA+SPDIEAAVLVPAKTLAEAA+ GI GSDVR G GKDGLL Sbjct 181 TDRFRLAVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRCRWGRAQVCGKDGLL 240 Query 241 GISGNGKRSTTRLLDAEF 258 GISGNGKRSTTRLLDAEF Sbjct 241 GISGNGKRSTTRLLDAEF 258 >gi|334564473|ref|ZP_08517464.1| DNA polymerase III subunit beta [Corynebacterium bovis DSM 20582] Length=394 Score = 430 bits (1105), Expect = 3e-118, Method: Compositional matrix adjust. Identities = 209/392 (54%), Positives = 288/392 (74%), Gaps = 5/392 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 ++F + ++ FA A++WVA++LP++P P+L GVL+ DNGL +SGFD EVS ++ AE Sbjct 6 VSFTVAKDDFASALAWVARSLPSKPTQPILRGVLIDADDNGLQLSGFDREVSTRVRISAE 65 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + PG +LV+G+L SDI +LP KP+++ +G +V +TCG++RF LP M ++DYP LP L Sbjct 66 VSEPGRILVAGKLASDIIGSLPAKPINIDYDGTKVLVTCGSSRFELPAMTIDDYPVLPDL 125 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 PE TG + LF+EAISQVA+AAGRDDTLPMLTGIR+EI GE VVLAATDRFRLAVR Sbjct 126 PEVTGTIDPSLFSEAISQVAVAAGRDDTLPMLTGIRMEIDGEHVVLAATDRFRLAVRTFD 185 Query 193 WSASSPDIEAAVLVPAKTLAEAAKA--GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRST 250 W+ + D A +L+PA+TLA+ A+ G V +++GTG +G+DG+LGIS + +T Sbjct 186 WTPAQADATAELLIPARTLADTARTLDNNTGEPVEIAVGTGESIGRDGMLGISTETRHTT 245 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDA+FPKFR LLP EHTAVA+++++ L +AI+ V+LVA+R +Q+RM+F +GSV LSA Sbjct 246 TRLLDADFPKFRPLLPKEHTAVASVEISPLQDAIRRVSLVAERNSQIRMQFEEGSVTLSA 305 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 G DVG AEE L ++GEPL IAFNP YL +GL+++ +E+V FGFT +PA++ P Sbjct 306 GGSDVGSAEEKLPCTFSGEPLLIAFNPGYLKEGLAAVHTEKVVFGFTQPSRPAIMVP--- 362 Query 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + + + G FP TD+ YLLMPVRLPG Sbjct 363 EPESLPEQSAEGTFPTPETDFTYLLMPVRLPG 394 >gi|256374162|ref|YP_003097822.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827] gi|255918465|gb|ACU33976.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827] Length=378 Score = 428 bits (1101), Expect = 7e-118, Method: Compositional matrix adjust. Identities = 227/396 (58%), Positives = 293/396 (74%), Gaps = 24/396 (6%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLT-----GSDNGLTISGFDYEVSAEA 67 + R+ R+ ADAV+WVA++LP+RP VPVL GVLL GS + LT+SGFDYEVSA+ Sbjct 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGAEDGSGDALTVSGFDYEVSAQC 60 Query 68 QVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYP 127 V A I G LVSG+LL+DIT+ALPN PV+++V+G R+ +TCG+A+FSLPTMPVEDYP Sbjct 61 GVPATISDGGKALVSGKLLADITKALPNHPVEINVDGARMTITCGSAKFSLPTMPVEDYP 120 Query 128 TLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLA 187 LP++P+ G LP E+F EA++QVA+AAG+DDTLPMLTG+R+EI +VL ATDRFRLA Sbjct 121 ALPSMPQLAGELPGEVFGEAVAQVAVAAGKDDTLPMLTGVRLEIADGKLVLVATDRFRLA 180 Query 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246 +RE +W+ + AVLVPAKTL ++AK G G+ + LSL DGLLG+SGNG Sbjct 181 MREFEWTPDETLGDVAVLVPAKTLNDSAKTLGASGAKIELSL-----AANDGLLGLSGNG 235 Query 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSV 306 +R+TTRLLDA+FPK+RQLLP+EH+A A + V L++AIK V+LVA+RG QVR+EF D + Sbjct 236 RRTTTRLLDADFPKYRQLLPSEHSAAAIISVDTLVQAIKRVSLVAERGTQVRLEFGDAGL 295 Query 307 RLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLR 366 +LSAG DD G AEE+L VDY G+P+TIAFNPTYL +GL ++R+ R FTT +PALL+ Sbjct 296 KLSAGGDDEGSAEEELPVDYQGDPVTIAFNPTYLLEGLQAVRTPRAHLSFTTPSRPALLK 355 Query 367 PVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 PV+ D V+ YVYLLMPVRLPG Sbjct 356 PVNEDGE-------------VAEGYVYLLMPVRLPG 378 >gi|300781939|ref|YP_003762230.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] gi|299791453|gb|ADJ41828.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] gi|340523292|gb|AEK38497.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei S699] Length=377 Score = 426 bits (1096), Expect = 3e-117, Method: Compositional matrix adjust. Identities = 224/395 (57%), Positives = 286/395 (73%), Gaps = 23/395 (5%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLL-TGSD---NGLTISGFDYEVSAEAQ 68 + R+ R+ ADAV+WVA++LP+RP VPVL GVLL GSD + LT+SGFDYEVSA Sbjct 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGSDGETDALTVSGFDYEVSATVG 60 Query 69 VGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPT 128 V A I G +LVSGRLL+DIT+ALP +PV++ V+G R +TCG ARFSLPTMPVEDYP Sbjct 61 VPATIADGGRLLVSGRLLADITKALPAQPVEISVDGARATITCGTARFSLPTMPVEDYPQ 120 Query 129 LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAV 188 LP+ P G L + F +A++QV +AAG+DDTLPMLTG+R+EI G ++ L ATDRFRLA+ Sbjct 121 LPSQPAFAGELAGDAFGQAVTQVVVAAGKDDTLPMLTGMRLEISGSSLTLVATDRFRLAM 180 Query 189 RELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGK 247 RE W + +AAVLVPA+TLAEAAK G G+ +RL+L +G +GLLG+SG+G+ Sbjct 181 REFTWQPAEGLADAAVLVPARTLAEAAKTLGASGATIRLALASG-----EGLLGLSGSGR 235 Query 248 RSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVR 307 +TTRLLDAEFP +RQLLP H++ A +DV+ L E+IK V+LVA+RG QVR+EF D ++R Sbjct 236 YTTTRLLDAEFPPYRQLLPASHSSRAVIDVSALTESIKRVSLVAERGTQVRLEFGDNTLR 295 Query 308 LSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRP 367 LSAG DD G AEE+L V+Y GEP+TIAFNP YL DGL +L S+R FTT +PAL++P Sbjct 296 LSAGGDDEGSAEEELQVEYEGEPVTIAFNPGYLVDGLGALHSDRAELTFTTPNRPALIKP 355 Query 368 VSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + V G Y+YLLMPVRLPG Sbjct 356 ADAEGNVVPG-------------YLYLLMPVRLPG 377 >gi|331693901|ref|YP_004330140.1| DNA polymerase III subunit beta [Pseudonocardia dioxanivorans CB1190] gi|326948590|gb|AEA22287.1| DNA polymerase III, beta subunit [Pseudonocardia dioxanivorans CB1190] Length=376 Score = 422 bits (1084), Expect = 7e-116, Method: Compositional matrix adjust. Identities = 228/394 (58%), Positives = 287/394 (73%), Gaps = 22/394 (5%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGS-DNG---LTISGFDYEVSAEAQ 68 + FR+ R+ ADA +WVA++LPARP VPVL GVL+ G D G LT+SGFDYE SA + Sbjct 1 MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIEGGGDPGAETLTVSGFDYETSARVE 60 Query 69 VGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPT 128 + A + PG VLVSGRLL+DITRALP+KPVD+ V+G+R + CGN+RFSLPTMPVEDYP Sbjct 61 LDATVGDPGQVLVSGRLLADITRALPSKPVDLVVDGSRATINCGNSRFSLPTMPVEDYPQ 120 Query 129 LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAV 188 LP +P+ G + A++ A A++QVA+AAGRDDTLPMLTG+R+EI G + LAATDRFRLAV Sbjct 121 LPAMPQRAGSVAADVLASAVAQVAVAAGRDDTLPMLTGVRLEIEGSRLTLAATDRFRLAV 180 Query 189 RELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKR 248 REL W P AVL+PA+TLA+ AKA G V ++L G DG+LG++G+G+R Sbjct 181 RELDWEPEDPSASTAVLIPARTLADVAKALSGSGTVEIALSAG-----DGMLGMTGSGRR 235 Query 249 STTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRL 308 +TTRLLDAEFP+FRQL+P E T A ++VA L+EAIK VALVADR AQ+R+EF + +RL Sbjct 236 ATTRLLDAEFPRFRQLIPAESTTNAEIEVATLVEAIKRVALVADRVAQIRLEFGEDGLRL 295 Query 309 SAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPV 368 +AG DDVG AEE++ GEPLTIAFNP+YL D L +L +ERV FTT +PAL RPV Sbjct 296 AAGGDDVGSAEEEIPCALQGEPLTIAFNPSYLLDALGALHTERVQLSFTTPNRPALARPV 355 Query 369 SGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 DD A + Y++LLMPVRLPG Sbjct 356 VADD-------------AANPGYLHLLMPVRLPG 376 >gi|324999883|ref|ZP_08120995.1| DNA polymerase III subunit beta [Pseudonocardia sp. P1] Length=386 Score = 418 bits (1075), Expect = 6e-115, Method: Compositional matrix adjust. Identities = 235/398 (60%), Positives = 290/398 (73%), Gaps = 20/398 (5%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLT--GSDN----GLTISGFDYEVSAE 66 + FR+ R+ ADA +WVA++LPARP VPVL GVL+ GSD LT+SGFDYE SA Sbjct 1 MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIQSDGSDETAGEKLTVSGFDYETSAR 60 Query 67 AQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDY 126 ++ A + PG +LVSGRLL+DITRALP+KPVD+ V+G R + CGN+RFSLPTMPVEDY Sbjct 61 VELDATVGEPGRMLVSGRLLADITRALPSKPVDLVVDGARATINCGNSRFSLPTMPVEDY 120 Query 127 PTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRL 186 P LP +P++ G + A+ A A++QVA+A+GRDDTLPMLTGIR+EI G + LAATDRFRL Sbjct 121 PQLPDMPQKAGSVAADALAAAVAQVAVASGRDDTLPMLTGIRLEIEGSQLTLAATDRFRL 180 Query 187 AVRELKWSASSPDIEAAVLVPAKTLAEAAK--AGIGGSDVRLSLGTGPGVGKDGLLGISG 244 AVREL+WS I AVL+PAKTLAE AK AG G DV LS G DG+LG++G Sbjct 181 AVRELEWSPEDASISTAVLIPAKTLAEVAKTLAGSGTVDVALSAG-------DGMLGLTG 233 Query 245 NGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADG 304 G+RST+RLLDAEFP+FRQL+P EHT +DVA L+EAIK V+LVADR AQ+RMEF + Sbjct 234 GGRRSTSRLLDAEFPRFRQLIPAEHTTAVELDVAMLVEAIKRVSLVADRVAQIRMEFGED 293 Query 305 SVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPAL 364 +RL+AG DDVG AEE+L G PLTIAFNP YL D L +L ++R FTT +PAL Sbjct 294 GLRLAAGGDDVGSAEEELPCALDGNPLTIAFNPGYLLDALGALHTDRAQLTFTTPNRPAL 353 Query 365 LRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +RPV +P A +G P P S Y++LLMPVRLPG Sbjct 354 VRPVP---KP-ATDDGEAPSPEKS-GYLHLLMPVRLPG 386 >gi|68535064|ref|YP_249769.1| DNA polymerase III subunit beta [Corynebacterium jeikeium K411] gi|260579562|ref|ZP_05847433.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|68262663|emb|CAI36151.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium K411] gi|258602333|gb|EEW15639.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC 43734] Length=394 Score = 418 bits (1074), Expect = 9e-115, Method: Compositional matrix adjust. Identities = 207/392 (53%), Positives = 283/392 (73%), Gaps = 5/392 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 ++F + ++ FA A+ WVA++LP++P P+L GV++ D GL +SGFD EVS ++ AE Sbjct 6 VSFIVPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFDREVSTRVRINAE 65 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + PG +LV+G+L SDI +LPNKP+++ +G V L G ++F LP M +EDYP LP L Sbjct 66 VNEPGKILVAGKLASDIVGSLPNKPINIEFDGTTVILKTGKSKFELPAMTIEDYPVLPEL 125 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 PE TG + LFAE+ISQVA+AAGRDDTLPMLTG+ VEI GE V++ ATDRFRLAVR + Sbjct 126 PEVTGTIDPNLFAESISQVAVAAGRDDTLPMLTGVHVEIDGENVIMVATDRFRLAVRSFQ 185 Query 193 WSASSPDIEAAVLVPAKTLAEAAKA-GIGGSD-VRLSLGTGPGVGKDGLLGISGNGKRST 250 W+ + D +A +L+PA+TLA+ A++ +D + +++G+G +G DGLLGIS + +T Sbjct 186 WNPAQADAQAKLLIPARTLADTARSMDPNNTDPIEIAVGSGEDIGADGLLGISTESRHTT 245 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFPKFR LLP HTA+A++++A L EAIK V++VA+R +Q+RM+F D +V LSA Sbjct 246 TRLLDAEFPKFRPLLPKTHTALASVEIAPLQEAIKRVSIVAERNSQIRMDFKDNTVTLSA 305 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 G DVG A E L +AGEPL IAFNP+YL +GL+++ + RV FGFT A +PA+L P G Sbjct 306 GGSDVGSATETLDCAFAGEPLVIAFNPSYLKEGLAAIHTPRVVFGFTMASRPAILLPDPG 365 Query 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + P A GN F TD+ YLLMPVRLPG Sbjct 366 -ELPEADAEGN--FATPETDFTYLLMPVRLPG 394 >gi|305681648|ref|ZP_07404454.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC 14266] gi|305658808|gb|EFM48309.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC 14266] Length=418 Score = 408 bits (1049), Expect = 7e-112, Method: Compositional matrix adjust. Identities = 201/394 (52%), Positives = 277/394 (71%), Gaps = 7/394 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 ++F + +E A AVSWVA+NLP +PA PVL +L+T D+GL +GFDYEVS + ++ AE Sbjct 28 VSFVVAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAE 87 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + PG + V+G+L++DIT LPNKPV++ V+G+ V L CG++RF LP++P++DYPTLPTL Sbjct 88 VNQPGRIAVAGKLIADITATLPNKPVEIFVDGSTVQLKCGSSRFELPSIPLDDYPTLPTL 147 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 PE TG + LF +A++QVA AAG+DDTLPMLTG+ +EI GE + L ATDRFRLA+R + Sbjct 148 PEVTGAINPRLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITLTATDRFRLALRRFQ 207 Query 193 WSASSPDIEAAVLVPAKTLAEAAKAGIGGSD--VRLSLGTGPGVGKDGLLGISGNGKRST 250 W + PD +A +L+PAK E A+ S V +++G+G +G +GL GI + +++T Sbjct 208 WIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVDARQTT 267 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFP LLP H +A+++++ L +AIK VALVADR AQ+RM F G V LSA Sbjct 268 TRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVADRNAQIRMHFTPGEVLLSA 327 Query 311 GADDVGRAEEDLVVDYAG--EPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPV 368 G D G AEE + ++ G E L IAFNP YL DGL +R++RV FGFT + +PA+L P Sbjct 328 GGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHVVRTQRVVFGFTESSRPAILIP- 386 Query 369 SGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + + LN +G +P TD+ YLLMPVRLPG Sbjct 387 --EPEKLPELNDDGLYPTPDTDFTYLLMPVRLPG 418 >gi|237784639|ref|YP_002905344.1| DNA polymerase III subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237757551|gb|ACR16801.1| DNA polymerase III, beta subunit [Corynebacterium kroppenstedtii DSM 44385] Length=394 Score = 407 bits (1047), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 196/392 (50%), Positives = 284/392 (73%), Gaps = 5/392 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 ++FR+ ++ + A+SWVA++L ++P P+L GV++T D GL ++GFDYEVS ++ AE Sbjct 6 VSFRVAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLLLAGFDYEVSTRVRISAE 65 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 ++ PG VLV+G+L +DI +LP+K V + V+G +V +TCG + F LP M +EDYP LP+L Sbjct 66 VLEPGQVLVAGKLANDIIGSLPHKDVAISVDGTKVHVTCGQSNFELPAMTIEDYPELPSL 125 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 PEETG + +F AI QVA AAG+DD++PMLTGI++E+ G+ VVLAATDRFRLAVRE Sbjct 126 PEETGHIDPHVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDNVVLAATDRFRLAVREFT 185 Query 193 WSASSPDIEAAVLVPAKTLAEAAKA--GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRST 250 W SSPD++A +L+PA+TLA++A+ ++L++G VGKDGLLGI +++T Sbjct 186 WEPSSPDVDAEILIPARTLADSARTLDTRLNDPIQLAMGAAQDVGKDGLLGIVSENRQTT 245 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRL+DA+FPKFR LLP H+++A +++A L++AI+ V+LVA+R AQV++EF++ + LSA Sbjct 246 TRLIDADFPKFRPLLPKSHSSMAIVEIAPLLDAIRRVSLVAERNAQVKLEFSEDQLVLSA 305 Query 311 GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSG 370 G + G AEE L +AGEPL IAFN YL +GL+S+ ++ V FGFT +PA+L P Sbjct 306 GGSEAGTAEETLPAQFAGEPLLIAFNANYLKEGLASIDTKNVVFGFTQPSRPAILIP--- 362 Query 371 DDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + + + +G FP ST + YLLMPVRLPG Sbjct 363 EPETMPEQDSDGQFPTPSTYFTYLLMPVRLPG 394 >gi|225020876|ref|ZP_03710068.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii ATCC 33806] gi|224946358|gb|EEG27567.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii ATCC 33806] Length=396 Score = 407 bits (1046), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 201/394 (52%), Positives = 277/394 (71%), Gaps = 7/394 (1%) Query 13 LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAE 72 ++F + +E A AVSWVA+NLP +PA PVL +L+T D+GL +GFDYEVS + ++ AE Sbjct 6 VSFVVAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAE 65 Query 73 IVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL 132 + PG + V+G+L++DIT LPNKPV++ V+G+ V L CG++RF LP++P++DYPTLPTL Sbjct 66 VNQPGRIAVAGKLIADITATLPNKPVEIFVDGSTVQLKCGSSRFELPSIPLDDYPTLPTL 125 Query 133 PEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELK 192 PE TG + LF +A++QVA AAG+DDTLPMLTG+ +EI GE + L ATDRFRLA+R + Sbjct 126 PEVTGAINPRLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITLTATDRFRLALRRFQ 185 Query 193 WSASSPDIEAAVLVPAKTLAEAAKAGIGGSD--VRLSLGTGPGVGKDGLLGISGNGKRST 250 W + PD +A +L+PAK E A+ S V +++G+G +G +GL GI + +++T Sbjct 186 WIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVDARQTT 245 Query 251 TRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSA 310 TRLLDAEFP LLP H +A+++++ L +AIK VALVADR AQ+RM F G V LSA Sbjct 246 TRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVADRNAQIRMHFTPGEVLLSA 305 Query 311 GADDVGRAEEDLVVDYAG--EPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPV 368 G D G AEE + ++ G E L IAFNP YL DGL +R++RV FGFT + +PA+L P Sbjct 306 GGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHVVRTQRVVFGFTESSRPAILIP- 364 Query 369 SGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 + + LN +G +P TD+ YLLMPVRLPG Sbjct 365 --EPEKLPELNDDGLYPTPDTDFTYLLMPVRLPG 396 >gi|336324563|ref|YP_004604529.1| DNA polymerase III subunit beta [Corynebacterium resistens DSM 45100] gi|336100545|gb|AEI08365.1| DNA polymerase III, beta subunit [Corynebacterium resistens DSM 45100] Length=394 Score = 407 bits (1046), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 200/394 (51%), Positives = 288/394 (74%), Gaps = 5/394 (1%) Query 11 TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVG 70 ++ F + ++ F+ A+ WVA++LP++P PVL GVL+ +D GL +SGFD EVS + + Sbjct 4 NNVRFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFDREVSTQITIN 63 Query 71 AEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLP 130 AE+ PG +L++G+L++DI +LP+KP+ + ++ +V +T G++RF LP M +EDYP LP Sbjct 64 AEVDEPGRILIAGKLVNDIVGSLPDKPITLELKETKVLVTSGSSRFELPAMTIEDYPELP 123 Query 131 TLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRE 190 +LP TG + LF+EA+ QVA AAGRDDTLPMLTG+ VE+ GE V +AATDRFRLAVR Sbjct 124 SLPGVTGTIDPHLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTMAATDRFRLAVRT 183 Query 191 LKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSD--VRLSLGTGPGVGKDGLLGISGNGKR 248 L+W+ + D +A +L+PA+TL++ A++ S + +++G+G +G+DGLLGI+ + + Sbjct 184 LQWNPAQADGQATLLIPARTLSDTARSLDAQSSDPIEIAVGSGDSIGQDGLLGIATDSRH 243 Query 249 STTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRL 308 +TTRLLDAEFPKFR LLPT HTAVA++++A L +AI+ V+LVADR +Q+RM+F +GS+ L Sbjct 244 TTTRLLDAEFPKFRPLLPTSHTAVASVEIAPLQDAIRRVSLVADRNSQIRMQFEEGSLTL 303 Query 309 SAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPV 368 SAG +VG A E L +AGEPL IAFNP YL +GL ++ + RV FGFT A +PA++ P Sbjct 304 SAGGSEVGSATEQLQCAFAGEPLEIAFNPGYLKEGLGAIHTPRVVFGFTLASRPAIMIPD 363 Query 369 SGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG 402 +G + P A GN F TD+ YLLMPVR+PG Sbjct 364 AG-NLPEADAEGN--FATPETDFTYLLMPVRIPG 394 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 794889220320 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40