BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0003
Length=385
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607145|ref|NP_214517.1| recombination protein F [Mycobacter... 753 0.0
gi|15839375|ref|NP_334412.1| recombination protein F [Mycobacter... 751 0.0
gi|31791180|ref|NP_853673.1| recombination protein F [Mycobacter... 749 0.0
gi|1321906|emb|CAA63259.1| recF [Mycobacterium tuberculosis H37Rv] 749 0.0
gi|289445528|ref|ZP_06435272.1| DNA replication and repair prote... 748 0.0
gi|340625036|ref|YP_004743488.1| DNA replication and repair prot... 747 0.0
gi|323717342|gb|EGB26547.1| DNA replication and repair protein r... 630 2e-178
gi|240172093|ref|ZP_04750752.1| recombination protein F [Mycobac... 596 2e-168
gi|15826868|ref|NP_301131.1| recombination protein F [Mycobacter... 585 3e-165
gi|296167141|ref|ZP_06849548.1| recombination protein F [Mycobac... 577 1e-162
gi|1262354|emb|CAA94710.1| RecF [Mycobacterium leprae] 569 3e-160
gi|254818681|ref|ZP_05223682.1| recombination protein F [Mycobac... 568 4e-160
gi|183980038|ref|YP_001848329.1| DNA replication and repair prot... 562 4e-158
gi|41406101|ref|NP_958937.1| recombination protein F [Mycobacter... 554 8e-156
gi|6969272|gb|AAF33693.1| putative recF [Mycobacterium avium sub... 553 2e-155
gi|336459818|gb|EGO38732.1| recF protein [Mycobacterium avium su... 553 2e-155
gi|254773056|ref|ZP_05214572.1| recombination protein F [Mycobac... 552 3e-155
gi|118465169|ref|YP_879306.1| recombination protein F [Mycobacte... 551 5e-155
gi|342862355|ref|ZP_08718996.1| recombination protein F [Mycobac... 549 3e-154
gi|118615922|ref|YP_904254.1| recombination protein F [Mycobacte... 548 6e-154
gi|120401032|ref|YP_950861.1| recombination protein F [Mycobacte... 546 3e-153
gi|108796985|ref|YP_637182.1| recombination protein F [Mycobacte... 543 2e-152
gi|126432617|ref|YP_001068308.1| recombination protein F [Mycoba... 541 5e-152
gi|118467917|ref|YP_884426.1| recombination protein F [Mycobacte... 541 7e-152
gi|145221418|ref|YP_001132096.1| recombination protein F [Mycoba... 536 3e-150
gi|315441700|ref|YP_004074579.1| DNA replication and repair prot... 532 3e-149
gi|333988643|ref|YP_004521257.1| DNA replication and repair prot... 513 2e-143
gi|169627112|ref|YP_001700761.1| recombination protein F [Mycoba... 500 2e-139
gi|226362898|ref|YP_002780678.1| recombination protein F [Rhodoc... 436 2e-120
gi|111020658|ref|YP_703630.1| recombination protein F [Rhodococc... 426 4e-117
gi|167508523|gb|ABZ81468.1| recombination protein F [Mycobacteri... 422 7e-116
gi|229491171|ref|ZP_04384999.1| DNA replication and repair prote... 417 2e-114
gi|226303493|ref|YP_002763451.1| DNA replication and repair prot... 416 5e-114
gi|167508527|gb|ABZ81470.1| recombination protein F [Mycobacteri... 415 6e-114
gi|333917682|ref|YP_004491263.1| DNA replication and repair prot... 412 6e-113
gi|167508525|gb|ABZ81469.1| recombination protein F [Mycobacteri... 410 1e-112
gi|325677517|ref|ZP_08157181.1| recombination protein F [Rhodoco... 410 2e-112
gi|312137518|ref|YP_004004854.1| DNA replication and repair prot... 410 3e-112
gi|167508539|gb|ABZ81476.1| recombination protein F [Mycobacteri... 409 3e-112
gi|167508533|gb|ABZ81473.1| recombination protein F [Mycobacteri... 408 8e-112
gi|167508537|gb|ABZ81475.1| recombination protein F [Mycobacteri... 407 1e-111
gi|167508541|gb|ABZ81477.1| recombination protein F [Mycobacteri... 407 2e-111
gi|167508529|gb|ABZ81471.1| recombination protein F [Mycobacteri... 406 4e-111
gi|167508531|gb|ABZ81472.1| recombination protein F [Mycobacteri... 406 4e-111
gi|167508521|gb|ABZ81467.1| recombination protein F [Mycobacteri... 404 9e-111
gi|256374164|ref|YP_003097824.1| recombination protein F [Actino... 402 4e-110
gi|296137755|ref|YP_003644998.1| DNA replication and repair prot... 395 8e-108
gi|134096624|ref|YP_001102285.1| recombination protein F [Saccha... 394 9e-108
gi|257054093|ref|YP_003131925.1| recombination protein F [Saccha... 394 1e-107
gi|326383912|ref|ZP_08205596.1| recombination protein F [Gordoni... 394 2e-107
>gi|15607145|ref|NP_214517.1| recombination protein F [Mycobacterium tuberculosis H37Rv]
gi|148659760|ref|YP_001281283.1| recombination protein F [Mycobacterium tuberculosis H37Ra]
gi|167969466|ref|ZP_02551743.1| recombination protein F [Mycobacterium tuberculosis H37Ra]
12 more sequence titles
Length=385
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/385 (99%), Positives = 385/385 (100%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL
Sbjct 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE
Sbjct 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF
Sbjct 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS
Sbjct 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS
Sbjct 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP
Sbjct 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGWDARRVHIDVRADDTGSMSVVLP
Sbjct 361 AGWDARRVHIDVRADDTGSMSVVLP 385
>gi|15839375|ref|NP_334412.1| recombination protein F [Mycobacterium tuberculosis CDC1551]
gi|148821194|ref|YP_001285948.1| recombination protein F [Mycobacterium tuberculosis F11]
gi|253796918|ref|YP_003029919.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
KZN 1435]
54 more sequence titles
Length=385
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/385 (99%), Positives = 384/385 (99%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL
Sbjct 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE
Sbjct 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF
Sbjct 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS
Sbjct 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
EQSD DRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS
Sbjct 241 EQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP
Sbjct 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGWDARRVHIDVRADDTGSMSVVLP
Sbjct 361 AGWDARRVHIDVRADDTGSMSVVLP 385
>gi|31791180|ref|NP_853673.1| recombination protein F [Mycobacterium bovis AF2122/97]
gi|121635886|ref|YP_976109.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|121635913|ref|YP_976136.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur
1173P2]
8 more sequence titles
Length=385
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/385 (99%), Positives = 384/385 (99%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL
Sbjct 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE
Sbjct 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERV+RQRTALLKSVPGARYRGDRGVF
Sbjct 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVVRQRTALLKSVPGARYRGDRGVF 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS
Sbjct 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
EQSD DRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS
Sbjct 241 EQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP
Sbjct 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGWDARRVHIDVRADDTGSMSVVLP
Sbjct 361 AGWDARRVHIDVRADDTGSMSVVLP 385
>gi|1321906|emb|CAA63259.1| recF [Mycobacterium tuberculosis H37Rv]
Length=385
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/385 (99%), Positives = 385/385 (100%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL
Sbjct 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE
Sbjct 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF
Sbjct 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL++WDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS
Sbjct 181 DTLDLWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS
Sbjct 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP
Sbjct 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGWDARRVHIDVRADDTGSMSVVLP
Sbjct 361 AGWDARRVHIDVRADDTGSMSVVLP 385
>gi|289445528|ref|ZP_06435272.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
CPHL_A]
gi|289418486|gb|EFD15687.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
CPHL_A]
Length=385
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/385 (99%), Positives = 383/385 (99%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSAD PL
Sbjct 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADSPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE
Sbjct 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF
Sbjct 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS
Sbjct 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
EQSD DRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS
Sbjct 241 EQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP
Sbjct 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGWDARRVHIDVRADDTGSMSVVLP
Sbjct 361 AGWDARRVHIDVRADDTGSMSVVLP 385
>gi|340625036|ref|YP_004743488.1| DNA replication and repair protein RECF [Mycobacterium canettii
CIPT 140010059]
gi|340003226|emb|CCC42343.1| DNA replication and repair protein RECF (single-strand DNA binding
protein) [Mycobacterium canettii CIPT 140010059]
Length=385
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/385 (99%), Positives = 382/385 (99%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL
Sbjct 1 MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE
Sbjct 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF
Sbjct 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS
Sbjct 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
EQSD DRQLLAARL AALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS
Sbjct 241 EQSDTDRQLLAARLSAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LAVALRLAAYQLLR DGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP
Sbjct 301 LAVALRLAAYQLLRADGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGWDARRVHIDVRADDTGSMSVVLP
Sbjct 361 AGWDARRVHIDVRADDTGSMSVVLP 385
>gi|323717342|gb|EGB26547.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
CDC1551A]
gi|339293083|gb|AEJ45194.1| recombination protein F [Mycobacterium tuberculosis CCDC5079]
Length=328
Score = 630 bits (1624), Expect = 2e-178, Method: Compositional matrix adjust.
Identities = 326/328 (99%), Positives = 327/328 (99%), Gaps = 0/328 (0%)
Query 58 LPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLF 117
+PLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLF
Sbjct 1 MPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLF 60
Query 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177
APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR
Sbjct 61 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 120
Query 178 GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVT 237
GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVT
Sbjct 121 GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVT 180
Query 238 GPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGE 297
GPSEQSD DRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGE
Sbjct 181 GPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGE 240
Query 298 AWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLE 357
AWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLE
Sbjct 241 AWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLE 300
Query 358 DIPAGWDARRVHIDVRADDTGSMSVVLP 385
DIPAGWDARRVHIDVRADDTGSMSVVLP
Sbjct 301 DIPAGWDARRVHIDVRADDTGSMSVVLP 328
>gi|240172093|ref|ZP_04750752.1| recombination protein F [Mycobacterium kansasii ATCC 12478]
Length=388
Score = 596 bits (1537), Expect = 2e-168, Method: Compositional matrix adjust.
Identities = 319/386 (83%), Positives = 346/386 (90%), Gaps = 3/386 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLELHPGRTVFVGPNG+GKTNLIEALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELHPGRTVFVGPNGFGKTNLIEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAVISTIVV+DGRECAVDLEIA GR NKARLNRS VRSTR+VVGVLRAVLFAPE
Sbjct 61 IRAGADRAVISTIVVSDGRECAVDLEIAAGRANKARLNRSPVRSTREVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDPADRRRYLDDLA VRRPA+AAVRA+Y++VLRQRTALLKSV GARYRGDRGV
Sbjct 121 DLALVRGDPADRRRYLDDLATVRRPAVAAVRADYDKVLRQRTALLKSVAGARYRGDRGVL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGP- 239
DTL+VWDSRLAEHGAEL+AAR+DLV+QLAPEV KAYQLLAPESR+ASI YRASM P
Sbjct 181 DTLDVWDSRLAEHGAELMAARMDLVSQLAPEVAKAYQLLAPESRTASIEYRASMTSVVPG 240
Query 240 SEQSD--IDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGE 297
S++ D DR L ARLLAALAARRDAE+ERGVCLVGPHRDDL LRLGDQPAKGFASHGE
Sbjct 241 SDEPDGTADRGYLEARLLAALAARRDAEVERGVCLVGPHRDDLELRLGDQPAKGFASHGE 300
Query 298 AWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLE 357
+WS+AVALRLAAY+LLRV+G +PVLLLDDVFAELD RRRALA+ AESAEQV+VTAAV E
Sbjct 301 SWSMAVALRLAAYELLRVEGSDPVLLLDDVFAELDTRRRRALASVAESAEQVVVTAAVPE 360
Query 358 DIPAGWDARRVHIDVRADDTGSMSVV 383
DIPAGWDA+RV ID+R G +SVV
Sbjct 361 DIPAGWDAKRVQIDLRDGADGRLSVV 386
>gi|15826868|ref|NP_301131.1| recombination protein F [Mycobacterium leprae TN]
gi|221229346|ref|YP_002502762.1| recombination protein F [Mycobacterium leprae Br4923]
gi|13432238|sp|P46391.3|RECF_MYCLE RecName: Full=DNA replication and repair protein recF
gi|254790484|sp|B8ZTP0.1|RECF_MYCLB RecName: Full=DNA replication and repair protein recF
gi|13092415|emb|CAC29511.1| putative DNA replication and SOS induction protein [Mycobacterium
leprae]
gi|219932453|emb|CAR70096.1| putative DNA replication and SOS induction protein [Mycobacterium
leprae Br4923]
Length=385
Score = 585 bits (1509), Expect = 3e-165, Method: Compositional matrix adjust.
Identities = 294/385 (77%), Positives = 331/385 (86%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRH GLRDFRSW VDLEL+PGRTVF GPNG GKTNLIEALWYSTTL SHRV D+PL
Sbjct 1 MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR GT RA++STIVVN+GRECA+DLEIA GR N+ARLNRS VR R+VVGVLRAVLFAPE
Sbjct 61 IRAGTIRAIVSTIVVNEGRECAIDLEIAAGRANRARLNRSLVRGMREVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LV GDPA+RRRYLDDLA VR+P IAAVRA+Y++VLRQRTALLKS+ ARYR D+GV
Sbjct 121 DLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSDQGVL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWD+RLAEHGAEL+AARIDLVNQLAPEV+KAYQLLAP SR+ASI YRAS+D+ G +
Sbjct 181 DTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLDIGGIA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
DR LL A LLA L+ RR+ ELERG+CLVGPHRD+L LRLGDQPAKGFASHGE+WS
Sbjct 241 GVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA+ALRLAAY+LLR DG EPVLLLDDVFAELD R RALAT AESAEQVLVT+A EDIP
Sbjct 301 LAIALRLAAYELLRADGNEPVLLLDDVFAELDAARCRALATVAESAEQVLVTSAAQEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
GWDA+ V +D+R D+G +SVV P
Sbjct 361 VGWDAKWVTVDLRDSDSGRVSVVYP 385
>gi|296167141|ref|ZP_06849548.1| recombination protein F [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897463|gb|EFG77062.1| recombination protein F [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=385
Score = 577 bits (1486), Expect = 1e-162, Method: Compositional matrix adjust.
Identities = 299/383 (79%), Positives = 331/383 (87%), Gaps = 0/383 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVFVG NG+GKTNL+EALW+S TLGSHRV +D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELEPGRTVFVGSNGFGKTNLVEALWFSATLGSHRVGSDTPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAV+STIVVN+GRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVVSTIVVNEGRECAVDLEIAAGRANKARLNRSPVRSTREVIGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDPA+RRRYLDDLA VRRPA+A VRA+Y++VLRQRTALLKS G R+R DRG
Sbjct 121 DLALVRGDPAERRRYLDDLATVRRPAVAGVRADYDKVLRQRTALLKSAAGMRHRADRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAEHGAEL+AARIDLVNQL PEV+KAYQLLAP SR ASI YR+S+ +
Sbjct 181 DTLDVWDSRLAEHGAELMAARIDLVNQLTPEVEKAYQLLAPASRPASIAYRSSLGAQLAA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ DR+ L A LLAALA RRDAELERG+CLVGPHRDDL L LGDQPAKGFASHGE+WS
Sbjct 241 DGGGHDREFLEAALLAALAERRDAELERGMCLVGPHRDDLELWLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
AVALRLAAY+LLR DG EPVLLLDDVFAELD RRRALAT AE+AEQVLVTAAV+EDIP
Sbjct 301 FAVALRLAAYELLRADGSEPVLLLDDVFAELDAARRRALATVAEAAEQVLVTAAVVEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVV 383
AGW AR+V+ID+R D G +S V
Sbjct 361 AGWAARQVYIDLRDGDLGRVSAV 383
>gi|1262354|emb|CAA94710.1| RecF [Mycobacterium leprae]
Length=385
Score = 569 bits (1467), Expect = 3e-160, Method: Compositional matrix adjust.
Identities = 293/385 (77%), Positives = 330/385 (86%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRH GLRDFRSW VDLEL+PGRTVF GPNG GKTNLIEALWYSTTL SHRV D+PL
Sbjct 1 MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR GT RA++STIVVN+GRECA+DLEIA GR N+ARLNRS VR R+VVGVLRAVLFAPE
Sbjct 61 IRAGTIRAIVSTIVVNEGRECAIDLEIAAGRANRARLNRSLVRGMREVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LV GDPA+RRRYLDDLA VR+P IAAVRA+Y++VLRQR ALLKS+ ARYR D+GV
Sbjct 121 DLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRLALLKSLAAARYRSDQGVL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWD+RLAEHGAEL+AARIDLVNQLAPEV+KAYQLLAP SR+ASI YRAS+D+ G +
Sbjct 181 DTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLDIGGIA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
DR LL A LLA L+ RR+ ELERG+CLVGPHRD+L LRLGDQPAKGFASHGE+WS
Sbjct 241 GVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA+ALRLAAY+LLR DG EPVLLLDDVFAELD R RALAT AESAEQVLVT+A EDIP
Sbjct 301 LAIALRLAAYELLRADGNEPVLLLDDVFAELDAARCRALATVAESAEQVLVTSAAQEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
GWDA+ V +D+R D+G +SVV P
Sbjct 361 VGWDAKWVTVDLRDSDSGRVSVVYP 385
>gi|254818681|ref|ZP_05223682.1| recombination protein F [Mycobacterium intracellulare ATCC 13950]
Length=385
Score = 568 bits (1465), Expect = 4e-160, Method: Compositional matrix adjust.
Identities = 293/381 (77%), Positives = 330/381 (87%), Gaps = 0/381 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVF+G NG+GKTNL+EALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G RAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGAARAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVIGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP++RRRYLDDLA +RRPA+AAVRA+YE+VLRQRTALLKS+ GARYRGD
Sbjct 121 DLALVRGDPSERRRYLDDLATLRRPAVAAVRADYEKVLRQRTALLKSLSGARYRGDHSAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAEHGAEL++ARIDL NQL PEV+KAYQLLAP SR+ASI YR+S+ +
Sbjct 181 DTLDVWDSRLAEHGAELMSARIDLANQLTPEVEKAYQLLAPGSRAASISYRSSLGADAAA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ + DR+ L A LLAALA RR AELERG+CLVGPHRDDL L LGDQPAKGFASHGE+WS
Sbjct 241 DIAGGDREFLEAALLAALAERRSAELERGMCLVGPHRDDLELWLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
A+ALRLAAY+LLR D +PVLLLDDVFAELD RRRALAT AESAEQVLVTAAV+EDIP
Sbjct 301 FALALRLAAYELLRADESDPVLLLDDVFAELDATRRRALATVAESAEQVLVTAAVVEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMS 381
AGWD RRV++D+ D+G +S
Sbjct 361 AGWDVRRVYVDLHDGDSGRVS 381
>gi|183980038|ref|YP_001848329.1| DNA replication and repair protein RecF [Mycobacterium marinum
M]
gi|226737814|sp|B2HI48.1|RECF_MYCMM RecName: Full=DNA replication and repair protein recF
gi|183173364|gb|ACC38474.1| DNA replication and repair protein RecF [Mycobacterium marinum
M]
Length=385
Score = 562 bits (1448), Expect = 4e-158, Method: Compositional matrix adjust.
Identities = 310/383 (81%), Positives = 335/383 (88%), Gaps = 0/383 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVFVGPNG+GKTN+IEALWYS TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAVISTIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVISTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVIGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDPADRRRYLDDLA +RRP IA VRA+Y++VLRQRTALLKSV GAR+RGDRG
Sbjct 121 DLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLA+HGAEL+AARIDLV LAPEV+KAYQLLAPESRSA+I YRASMD +
Sbjct 181 DTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMDAFVAA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ + DR L LLAALAARRDAELERGVCLVGPHRDDL LRLGDQPAKGFASHGE+WS
Sbjct 241 DDAAPDRVTLEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
+AVALRLAA+ LLR DG EPVLLLDDVFAELD RR ALA AESAEQVLVTAAVLEDIP
Sbjct 301 MAVALRLAAFALLRADGSEPVLLLDDVFAELDAARRTALARVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVV 383
+GWDAR+VHID+R G +SVV
Sbjct 361 SGWDARKVHIDLRDSADGRVSVV 383
>gi|41406101|ref|NP_958937.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|45645207|sp|Q9L7L5.2|RECF_MYCPA RecName: Full=DNA replication and repair protein recF
gi|41394449|gb|AAS02320.1| RecF [Mycobacterium avium subsp. paratuberculosis K-10]
Length=385
Score = 554 bits (1428), Expect = 8e-156, Method: Compositional matrix adjust.
Identities = 294/385 (77%), Positives = 334/385 (87%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVF+G NG+GKTNL+EALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR+RGDRG
Sbjct 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+S+ +
Sbjct 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
E + DR L A LLA LAA RDAELERG+CLVGPHRDDL L LG+Q AKGFASHGE+WS
Sbjct 241 EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA++LRLAA++LLR D +PVLLLDDVFAELD RRRALA AESAEQVLVTAAVLEDIP
Sbjct 301 LALSLRLAAFELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
GW ARR+ +++R D G +S + P
Sbjct 361 TGWQARRLFVELRDTDAGRVSELRP 385
>gi|6969272|gb|AAF33693.1| putative recF [Mycobacterium avium subsp. paratuberculosis]
Length=385
Score = 553 bits (1425), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 294/385 (77%), Positives = 333/385 (87%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVF+G NG+GKTNL+EALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR+R DRG
Sbjct 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRSDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+S+ +
Sbjct 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
E + DR L A LLA LAA RDAELERG+CLVGPHRDDL L LG+Q AKGFASHGE+WS
Sbjct 241 EVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA++LRLAAY+LLR D +PVLLLDDVFAELD RRRALA AESAEQVLVTAAVLEDIP
Sbjct 301 LALSLRLAAYELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
GW ARR+ +++R D G +S + P
Sbjct 361 TGWQARRLFVELRDTDAGRVSELRP 385
>gi|336459818|gb|EGO38732.1| recF protein [Mycobacterium avium subsp. paratuberculosis S397]
Length=385
Score = 553 bits (1425), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 294/385 (77%), Positives = 334/385 (87%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVF+G NG+GKTNL+EALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNR VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRLPVRSTREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR+RGDRG
Sbjct 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+S+ +
Sbjct 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
E + DR L A LLA LAARRDAELERG+CLVGPHRDDL L LG+Q AKGFASHGE+WS
Sbjct 241 EVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQVAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA++LRLAA++LLR D +PVLLLDDVFAELD RRRALA AESAEQVLVTAAVLEDIP
Sbjct 301 LALSLRLAAFELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
GW ARR+ +++R D G +S + P
Sbjct 361 TGWQARRLFVELRDTDAGRVSELRP 385
>gi|254773056|ref|ZP_05214572.1| recombination protein F [Mycobacterium avium subsp. avium ATCC
25291]
Length=385
Score = 552 bits (1423), Expect = 3e-155, Method: Compositional matrix adjust.
Identities = 293/385 (77%), Positives = 334/385 (87%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVF+G NG+GKTNL+EALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR+RGDRG
Sbjct 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+S+ +
Sbjct 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAASA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
E + DR L A LLA LAARRDAE+ERG+CLVGPHRDDL L LG++ KGFASHGE+WS
Sbjct 241 EVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGERVPKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA++LRLAAY+LLR D +PVLLLDDVFAELD RRRALA AESAEQVLVTAAVLEDIP
Sbjct 301 LALSLRLAAYELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
GW ARR+ +++R D G +S + P
Sbjct 361 TGWQARRLFVELRDTDAGGVSELRP 385
>gi|118465169|ref|YP_879306.1| recombination protein F [Mycobacterium avium 104]
gi|166220715|sp|A0Q8R8.1|RECF_MYCA1 RecName: Full=DNA replication and repair protein recF
gi|118166456|gb|ABK67353.1| DNA replication and repair protein RecF [Mycobacterium avium
104]
Length=385
Score = 551 bits (1421), Expect = 5e-155, Method: Compositional matrix adjust.
Identities = 296/385 (77%), Positives = 334/385 (87%), Gaps = 0/385 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVF+G NG+GKTNL+EALWYS+TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DR V+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRTVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR+RGDRG
Sbjct 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+S+ +
Sbjct 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAAAA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
E + DR L A LLA LAARR AELERGVCLVGPHRDDL L LG+Q AKGFASHGE+WS
Sbjct 241 EVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQVAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA++LRLAAY+LLR D +PVLLLDDVFAELD RRRALA AESAEQVLVTAAVLEDIP
Sbjct 301 LALSLRLAAYELLRADESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVVLP 385
AGW ARR+ +++R D G +S + P
Sbjct 361 AGWQARRLFVELRDTDAGRVSELRP 385
>gi|342862355|ref|ZP_08718996.1| recombination protein F [Mycobacterium colombiense CECT 3035]
gi|342130212|gb|EGT83540.1| recombination protein F [Mycobacterium colombiense CECT 3035]
Length=385
Score = 549 bits (1415), Expect = 3e-154, Method: Compositional matrix adjust.
Identities = 287/381 (76%), Positives = 335/381 (88%), Gaps = 0/381 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DL+L PGRTVF+G NG+GKTNL+EALWYS+T+GSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLDLQPGRTVFIGSNGFGKTNLLEALWYSSTMGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAV+STIVVN+GRECAVDLEIA GR NKARLNRS VR TR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVVSTIVVNEGRECAVDLEIAAGRANKARLNRSPVRGTREVIGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP+DRRRYLDDLA VRRPA+A VRA+Y++++RQRTALLKS+ GARYRGD+
Sbjct 121 DLSLVRGDPSDRRRYLDDLATVRRPAVAGVRADYDKIVRQRTALLKSLSGARYRGDQSAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLAE+GA+L+A RIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+S+ +
Sbjct 181 DTLDVWDSRLAEYGAQLMAVRIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAEAAA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ + DR+ L A LLAAL+ARRDAELERG+CLVGPHRDDL L LGDQPAKGFASHGE+WS
Sbjct 241 DIAGADREFLEAALLAALSARRDAELERGMCLVGPHRDDLELWLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
LA++LRLAAY+LLR + +PVLLLDDVFAELD RRRALA AESAEQVLVTAAVLEDIP
Sbjct 301 LALSLRLAAYELLRAEESDPVLLLDDVFAELDAARRRALAAVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMS 381
GW+AR++++D+R D+G +S
Sbjct 361 VGWEARQLYVDLRDSDSGRIS 381
>gi|118615922|ref|YP_904254.1| recombination protein F [Mycobacterium ulcerans Agy99]
gi|166220719|sp|A0PKB4.1|RECF_MYCUA RecName: Full=DNA replication and repair protein recF
gi|118568032|gb|ABL02783.1| DNA replication and repair protein RecF [Mycobacterium ulcerans
Agy99]
Length=385
Score = 548 bits (1412), Expect = 6e-154, Method: Compositional matrix adjust.
Identities = 309/383 (81%), Positives = 334/383 (88%), Gaps = 0/383 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA DLEL PGRTVFVGPNG+GKTN+IEALWYS TLGSHRV D PL
Sbjct 1 MYVRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G DRAVISTIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVLRAVLFAPE
Sbjct 61 IRAGADRAVISTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVIGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDPADRRRYLDDLA +RRP IA VRA+Y++VLRQRTALLKSV GAR+RGDRG
Sbjct 121 DLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWDSRLA+HGAEL+AARIDLV LAPEV+KAYQLLAPESRSA+I YRASMD +
Sbjct 181 DTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMDAFVAA 240
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ + DR L LLAALAARRDAELERGVCLVGPHRDDL LRLGDQPAKGFASHGE+WS
Sbjct 241 DDAAPDRVALEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAKGFASHGESWS 300
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
+AVALRLAA+ LLR DG EPVLLLDDVFAELD RR ALA AESAEQVLVTAAVLEDIP
Sbjct 301 MAVALRLAAFALLRADGSEPVLLLDDVFAELDAARRTALARVAESAEQVLVTAAVLEDIP 360
Query 361 AGWDARRVHIDVRADDTGSMSVV 383
+GWDAR+VHID+R G +S V
Sbjct 361 SGWDARKVHIDLRDSADGRVSAV 383
>gi|120401032|ref|YP_950861.1| recombination protein F [Mycobacterium vanbaalenii PYR-1]
gi|166220720|sp|A1T105.1|RECF_MYCVP RecName: Full=DNA replication and repair protein recF
gi|119953850|gb|ABM10855.1| DNA replication and repair protein RecF [Mycobacterium vanbaalenii
PYR-1]
Length=386
Score = 546 bits (1406), Expect = 3e-153, Method: Compositional matrix adjust.
Identities = 275/384 (72%), Positives = 323/384 (85%), Gaps = 1/384 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHL L DFRSWA V+LEL PGRTVFVG NG+GKTNLIEALWYS TLGSHRV++D PL
Sbjct 1 MYVRHLALTDFRSWARVELELEPGRTVFVGSNGFGKTNLIEALWYSATLGSHRVASDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +RAV+STIVVNDGRE AVDL+I +GR NKARLNRS VRS R+++GVLRAVLFAPE
Sbjct 61 IRAGAERAVVSTIVVNDGRELAVDLDITSGRANKARLNRSPVRSAREILGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP +RRRYLD+LA RRP IAAVRA+Y++V+RQRTALLK+ GARYRGDRG
Sbjct 121 DLALVRGDPGERRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASGARYRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVT-GP 239
+TL+VW+ LA HGA+L++AR+ LVN+LAPEV+KAYQLLAP SR A+I YR+ +DV
Sbjct 181 ETLDVWNGHLASHGAQLISARVQLVNELAPEVEKAYQLLAPGSRPAAIRYRSGVDVVEAE 240
Query 240 SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAW 299
+ + D ++ A LL AL+ RRDAELERGVCLVGPHRDDL LRLGDQ AKGFASHGE+W
Sbjct 241 AAAGNSDEEMFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQVAKGFASHGESW 300
Query 300 SLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDI 359
S+A+ALRLAAY+LLRV+G +PVLLLDDVFAELD RR+ALA A +AEQVLVTAAV EDI
Sbjct 301 SMALALRLAAYELLRVEGSDPVLLLDDVFAELDSARRQALAQVAATAEQVLVTAAVEEDI 360
Query 360 PAGWDARRVHIDVRADDTGSMSVV 383
PA WDARR+ I ++ D G +SVV
Sbjct 361 PAEWDARRIGITMQDSDGGRISVV 384
>gi|108796985|ref|YP_637182.1| recombination protein F [Mycobacterium sp. MCS]
gi|119866069|ref|YP_936021.1| recombination protein F [Mycobacterium sp. KMS]
gi|123369971|sp|Q1BG58.1|RECF_MYCSS RecName: Full=DNA replication and repair protein recF
gi|166220717|sp|A1U8S3.1|RECF_MYCSK RecName: Full=DNA replication and repair protein recF
gi|108767404|gb|ABG06126.1| DNA replication and repair protein RecF [Mycobacterium sp. MCS]
gi|119692158|gb|ABL89231.1| DNA replication and repair protein RecF [Mycobacterium sp. KMS]
Length=380
Score = 543 bits (1400), Expect = 2e-152, Method: Compositional matrix adjust.
Identities = 279/383 (73%), Positives = 318/383 (84%), Gaps = 5/383 (1%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VRHL L DFRSWA DLEL PGRTVFVGPNG+GKTNL+EALWYS TLGSHRV++D PL
Sbjct 1 MFVRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVG RAV+STIVVN+GRE AVDLEI TGR NKARLNRS VRS R+V+GVLRAVLFAPE
Sbjct 61 IRVGAPRAVVSTIVVNEGRELAVDLEITTGRANKARLNRSPVRSPREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP +RRRYLD+LA RRP+IA VRA+Y+RV+RQRTALLKS GARYRGDR V
Sbjct 121 DLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGDRSVL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
+TL+VWD LA HGA L+AAR DLV+ LAPEV+KAYQLLAP SR A+I YR S+D
Sbjct 181 ETLDVWDGHLAAHGALLMAARADLVHHLAPEVEKAYQLLAPGSRPAAIRYRTSIDA---- 236
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ D+ + A LL A+ RRDAELERGVCLVGPHRDDL LRLGDQ AKG+ASHGE+WS
Sbjct 237 -EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQMAKGYASHGESWS 295
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
+A++LRLAAY+LLR DG +PVLLLDDVFAELD RRRALA A SAEQVLVTAAV EDIP
Sbjct 296 MALSLRLAAYELLRTDGSDPVLLLDDVFAELDAARRRALAEVAASAEQVLVTAAVAEDIP 355
Query 361 AGWDARRVHIDVRADDTGSMSVV 383
A WDARR+ I ++ DD G +S+V
Sbjct 356 ADWDARRIMIRMQDDDDGRVSMV 378
>gi|126432617|ref|YP_001068308.1| recombination protein F [Mycobacterium sp. JLS]
gi|166220716|sp|A3PSE0.1|RECF_MYCSJ RecName: Full=DNA replication and repair protein recF
gi|126232417|gb|ABN95817.1| DNA replication and repair protein RecF [Mycobacterium sp. JLS]
Length=380
Score = 541 bits (1395), Expect = 5e-152, Method: Compositional matrix adjust.
Identities = 278/383 (73%), Positives = 317/383 (83%), Gaps = 5/383 (1%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VRHL L DFRSWA DLEL PGRTVFVGPNG+GKTNL+EALWYS TLGSHRV++D PL
Sbjct 1 MFVRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G RAV+STIVVN+GRE AVDLEI TGR NKARLNRS VRS R+V+GVLRAVLFAPE
Sbjct 61 IRAGAPRAVVSTIVVNEGRELAVDLEITTGRANKARLNRSPVRSPREVLGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP +RRRYLD+LA RRP+IA VRA+Y+RV+RQRTALLKS GARYRGDR V
Sbjct 121 DLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGDRSVL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
+TL+VWD LA HGA L+AAR DLV+ LAPEV+KAYQLLAP SR A+I YR S+D
Sbjct 181 ETLDVWDGHLAAHGALLMAARADLVHHLAPEVEKAYQLLAPGSRPAAIRYRTSIDA---- 236
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
+ D+ + A LL A+ RRDAELERGVCLVGPHRDDL LRLGDQ AKG+ASHGE+WS
Sbjct 237 -EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQMAKGYASHGESWS 295
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
+A++LRLAAY+LLR DG +PVLLLDDVFAELD RRRALA A SAEQVLVTAAV EDIP
Sbjct 296 MALSLRLAAYELLRTDGSDPVLLLDDVFAELDAARRRALAEVAASAEQVLVTAAVAEDIP 355
Query 361 AGWDARRVHIDVRADDTGSMSVV 383
A WDARR+ I ++ DD G +S+V
Sbjct 356 ADWDARRIVIRMQDDDDGRVSMV 378
>gi|118467917|ref|YP_884426.1| recombination protein F [Mycobacterium smegmatis str. MC2 155]
gi|152060497|sp|A0QND8.1|RECF_MYCS2 RecName: Full=DNA replication and repair protein recF
gi|152060498|sp|P0C561.1|RECF_MYCSM RecName: Full=DNA replication and repair protein recF
gi|1321896|emb|CAA63251.1| recF [Mycobacterium smegmatis]
gi|118169204|gb|ABK70100.1| DNA replication and repair protein RecF [Mycobacterium smegmatis
str. MC2 155]
Length=384
Score = 541 bits (1394), Expect = 7e-152, Method: Compositional matrix adjust.
Identities = 279/387 (73%), Positives = 316/387 (82%), Gaps = 9/387 (2%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++ RHLGL DFRSWA VDL+L PGRTVFVGPNG+GKTNL+EALWYS TLGSHRV+ D PL
Sbjct 1 MFARHLGLTDFRSWARVDLDLEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVATDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +RA++STIVVN+GRE AVDLEI +GR NKARLNRS VRS R+++GVLRAVLF+PE
Sbjct 61 IRAGAERAIVSTIVVNEGRELAVDLEITSGRANKARLNRSPVRSAREILGVLRAVLFSPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP DRRRYLD+LA RRPA+A VRA+Y++V+RQRTALLK+ GARYRGDR V
Sbjct 121 DLSLVRGDPGDRRRYLDELATTRRPALAGVRADYDKVVRQRTALLKTAAGARYRGDRSVI 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASM----DV 236
DTLEVWD LA HGA LVA+R+ LV +L PEV+KAYQLLAP SR A+I YR+S+ D
Sbjct 181 DTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLAPASRPAAIRYRSSVEAIEDA 240
Query 237 TGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHG 296
GP + A LL ALA RRDAELERGVCLVGPHRDDL LRLGDQPAKGFASHG
Sbjct 241 PGPESV-----EFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAKGFASHG 295
Query 297 EAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVL 356
E+WS+A+ALRL AY+LL DG EPVLLLDDVFAELD RRRALAT A SAEQVLVTAAV
Sbjct 296 ESWSMALALRLGAYELLCSDGVEPVLLLDDVFAELDTSRRRALATVAGSAEQVLVTAAVG 355
Query 357 EDIPAGWDARRVHIDVRADDTGSMSVV 383
EDIP WDARRV I + DD G +S+V
Sbjct 356 EDIPEDWDARRVEIRMVEDDGGRVSMV 382
>gi|145221418|ref|YP_001132096.1| recombination protein F [Mycobacterium gilvum PYR-GCK]
gi|189039630|sp|A4T4U1.1|RECF_MYCGI RecName: Full=DNA replication and repair protein recF
gi|145213904|gb|ABP43308.1| DNA replication and repair protein RecF [Mycobacterium gilvum
PYR-GCK]
Length=389
Score = 536 bits (1380), Expect = 3e-150, Method: Compositional matrix adjust.
Identities = 270/384 (71%), Positives = 320/384 (84%), Gaps = 1/384 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHL L DFRSW+ V+LEL PGRTVFVGPNG+GKTNL+EALWYS TLGSHRV++D PL
Sbjct 1 MYVRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +RAV+STI+VN+GRE AVDL+I +GR NKARLNRS VRS R+++GVLRAVLFAPE
Sbjct 61 IRAGAERAVVSTIIVNEGRELAVDLDITSGRANKARLNRSPVRSAREILGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP DRRRYLD+LA RRP IAAVRA+Y++V+RQRTALLK+ AR+RGDRG
Sbjct 121 DLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRAS-MDVTGP 239
+TL+VWD LA HGA+L+AAR+DLV++LAPEV+KAYQLLAP SR A++ YR+ V
Sbjct 181 ETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQLLAPASRPATVRYRSGVEVVEAE 240
Query 240 SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAW 299
+ + D ++ A LL AL+ RRDAELERGVCLVGPHRDDL LRLGDQPAKGFASHGE+W
Sbjct 241 AAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAKGFASHGESW 300
Query 300 SLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDI 359
S+A++LRLAAY+LLR DG +PVLLLDDVFAELD RR+ALA A SAEQVLVTAAV EDI
Sbjct 301 SMALSLRLAAYELLRADGSDPVLLLDDVFAELDSARRQALAQVAASAEQVLVTAAVGEDI 360
Query 360 PAGWDARRVHIDVRADDTGSMSVV 383
P WDARR+ I + D G +SV+
Sbjct 361 PVDWDARRIEIAMTDSDLGRVSVL 384
>gi|315441700|ref|YP_004074579.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1]
gi|315260003|gb|ADT96744.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1]
Length=389
Score = 532 bits (1371), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 269/384 (71%), Positives = 319/384 (84%), Gaps = 1/384 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHL L DFRSW+ V+LEL PGRTVFVGPNG+GKTNL+EALWYS TLGSHRV++D PL
Sbjct 1 MYVRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +RAV+STI+VN+GRE AVDL+I +GR NKARLNRS VRS R+++GVLRAVLFAPE
Sbjct 61 IRAGAERAVVSTIIVNEGRELAVDLDITSGRANKARLNRSPVRSAREILGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP DRRRYLD+LA RRP IAAVRA+Y++V+RQRTALLK+ AR+RGDRG
Sbjct 121 DLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGDRGAL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRAS-MDVTGP 239
+TL+VWD LA HGA+L+AAR+DLV++LAPEV+KAYQLLAP SR A++ YR+ V
Sbjct 181 ETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQLLAPASRPATVRYRSGVEVVEAE 240
Query 240 SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAW 299
+ + D ++ A LL AL+ RRDAELERGVCLVGPHRDDL LRLGDQPAKGFASHGE+W
Sbjct 241 AAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAKGFASHGESW 300
Query 300 SLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDI 359
S+A++LRLAAY+LLR DG +PVLLLDDVFAELD RR+ALA A SAEQVLVTAAV EDI
Sbjct 301 SMALSLRLAAYELLRADGSDPVLLLDDVFAELDSARRQALAQVAASAEQVLVTAAVGEDI 360
Query 360 PAGWDARRVHIDVRADDTGSMSVV 383
P WDA R+ I + D G +SV+
Sbjct 361 PVDWDAGRIEIAMTDSDLGRVSVL 384
>gi|333988643|ref|YP_004521257.1| DNA replication and repair protein RecF [Mycobacterium sp. JDM601]
gi|333484611|gb|AEF34003.1| DNA replication and repair protein RecF [Mycobacterium sp. JDM601]
Length=386
Score = 513 bits (1321), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 275/384 (72%), Positives = 320/384 (84%), Gaps = 2/384 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHLGLRDFRSWA VDLEL PG TV VG NGYGKTNL+EALWYS TLGSHRV+ D PL
Sbjct 1 MYVRHLGLRDFRSWAHVDLELEPGATVLVGANGYGKTNLVEALWYSATLGSHRVATDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +RAV+STIVVN+GRE AVDLEIA GR NK RLNR+ VR R+VVGVLRAVLFAPE
Sbjct 61 IRSGAERAVVSTIVVNEGRELAVDLEIAAGRANKVRLNRAPVRHAREVVGVLRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP +RRRYLD+LA VRRP +AAVRA+Y++VLRQRTALLKS GA YRGDR V
Sbjct 121 DLALVRGDPGERRRYLDELASVRRPRVAAVRADYDKVLRQRTALLKSASGALYRGDRSVL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
DTL+VWD++LA HGAEL+AARI+LV+QLAPEV+KAYQLLAP +R+A++ YR ++V P+
Sbjct 181 DTLDVWDAQLAAHGAELMAARIELVDQLAPEVEKAYQLLAPGTRTAAVAYRPKLEV--PA 238
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
E + L LLA LA RR AELERGVCLVGPHRD+L LRLGD+P KGFASHGE+WS
Sbjct 239 EAASAGPAELQELLLAELAQRRRAELERGVCLVGPHRDELELRLGDRPVKGFASHGESWS 298
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
+A++LRLAAYQLLR +G EPVLLLDDVFAELD RRRALA A +AEQVL+TAAV +D+P
Sbjct 299 MALSLRLAAYQLLRGEGAEPVLLLDDVFAELDAARRRALAEVAAAAEQVLITAAVADDVP 358
Query 361 AGWDARRVHIDVRADDTGSMSVVL 384
A W AR++ I V DDTG +S ++
Sbjct 359 ADWQARQIGIAVAEDDTGRVSKLI 382
>gi|169627112|ref|YP_001700761.1| recombination protein F [Mycobacterium abscessus ATCC 19977]
gi|169239079|emb|CAM60107.1| DNA replication and repair protein RecF [Mycobacterium abscessus]
Length=401
Score = 500 bits (1287), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 260/383 (68%), Positives = 305/383 (80%), Gaps = 5/383 (1%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
VYVR LGLRDFRSW V+LEL PGRTVFVGPNGYGKTNL+EALWYS+TLGSHRV+ D PL
Sbjct 20 VYVRQLGLRDFRSWERVNLELEPGRTVFVGPNGYGKTNLVEALWYSSTLGSHRVATDAPL 79
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +RAV+STIVVNDGRE A+DLEIA GR NKAR+NRS VRS R+V+G+L AVLFAPE
Sbjct 80 IRTGAERAVVSTIVVNDGRELAIDLEIAAGRANKARVNRSPVRSPREVLGILHAVLFAPE 139
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGA-RYRGDRGV 179
DL LVRGDPADRRR+LDDL I RRP +A VRA+Y++VLRQRTALLK+ A R R D+ V
Sbjct 140 DLSLVRGDPADRRRFLDDLLIQRRPRMAGVRADYDKVLRQRTALLKTAMAALRQRHDQSV 199
Query 180 FDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGP 239
DTL+VWD L HGAEL++ARI+LV +L P V+K+YQLLAP SR A I YR+S++
Sbjct 200 LDTLDVWDGHLVAHGAELLSARIELVGELHPLVEKSYQLLAPASRPADIAYRSSVEGV-- 257
Query 240 SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAW 299
++ + + LA L A L A+R AE+ERGVCLVGPHRDDL LRLGD PAKGFASHGE+W
Sbjct 258 --EAGLSVEHLADALQAGLVAKRSAEIERGVCLVGPHRDDLELRLGDGPAKGFASHGESW 315
Query 300 SLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDI 359
S A+ALRLAA+ LLR DG +PVL+LDDVFAELD RRR+LAT A AEQVLVTAAV +D+
Sbjct 316 SFALALRLAAFDLLRADGTDPVLMLDDVFAELDGARRRSLATVAADAEQVLVTAAVPDDV 375
Query 360 PAGWDARRVHIDVRADDTGSMSV 382
P AR V ++V+ G SV
Sbjct 376 PEELSARTVTVEVQEGPAGRKSV 398
>gi|226362898|ref|YP_002780678.1| recombination protein F [Rhodococcus opacus B4]
gi|254790485|sp|C1B7T0.1|RECF_RHOOB RecName: Full=DNA replication and repair protein recF
gi|226241385|dbj|BAH51733.1| DNA replication and repair protein RecF [Rhodococcus opacus B4]
Length=410
Score = 436 bits (1122), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 232/401 (58%), Positives = 281/401 (71%), Gaps = 17/401 (4%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR L LRDFRSW + L L PG TVFVGPNG+GKTN++EAL Y +TL SHRVS+D PL
Sbjct 1 MFVRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR GT +A VVN GRE VDLE+ G+ N+AR+N+S R R+++G+L+ VLFAPE
Sbjct 61 IRTGTAQAFAGATVVNTGRELTVDLELNEGKSNRARINQSPTRRPREILGILQTVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRG-- 178
DL LVRGDP DRRRYLD+L R P +AAVRA+YERVLRQR+ALLK+ GA R RG
Sbjct 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSSRGGG 180
Query 179 --------VFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGY 230
TLEVWD LA HGA+L+A R+ LV+ LAP + ++YQ LAPESR ASI Y
Sbjct 181 RPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASIRY 240
Query 231 RASMDVTGPSEQSDIDR-------QLLAARLLAALAARRDAELERGVCLVGPHRDDLILR 283
R+S+ + P E + R L R L L+ R E+ERGVCLVGPHRDDL L
Sbjct 241 RSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLELH 300
Query 284 LGDQPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAA 343
LGD PAKGFASHGE+WS A++LRLA + LLR DG +PVL+LDDVFAELD RRRALA A
Sbjct 301 LGDTPAKGFASHGESWSFALSLRLAGFALLRADGSDPVLMLDDVFAELDRKRRRALAKVA 360
Query 344 ESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVL 384
AEQVL+TAAV ED+P DA R ++ R D G +S +L
Sbjct 361 LDAEQVLITAAVPEDVPEELDAVRFGVEARDTDRGRISHIL 401
>gi|111020658|ref|YP_703630.1| recombination protein F [Rhodococcus jostii RHA1]
gi|123340329|sp|Q0SAG4.1|RECF_RHOSR RecName: Full=DNA replication and repair protein recF
gi|110820188|gb|ABG95472.1| DNA replication and repair protein [Rhodococcus jostii RHA1]
Length=410
Score = 426 bits (1094), Expect = 4e-117, Method: Compositional matrix adjust.
Identities = 230/401 (58%), Positives = 282/401 (71%), Gaps = 17/401 (4%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR L LRDFRSW + L L PG TVFVGPNG+GKTN++EAL Y +TL SHRVS+D PL
Sbjct 1 MFVRALSLRDFRSWDALGLTLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR GT +A VVN GRE VDLE+ G+ N+AR+N+S R R+++G+L+ VLFAPE
Sbjct 61 IRTGTGQAFAGATVVNAGRELTVDLELNEGKSNRARINQSPTRRPREILGILQTVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRG-- 178
DL LVRGDP DRRRYLD+L R P +AAVRA+Y+RVLRQR+ALLK+ GA R RG
Sbjct 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDRVLRQRSALLKTAGGALRRVSRGSG 180
Query 179 --------VFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGY 230
TLEVWD LA HGA+L+A R+ LV+ LAP + ++YQ LAPESR ASI Y
Sbjct 181 RPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASIRY 240
Query 231 RASMDVTGPSEQSDIDR-------QLLAARLLAALAARRDAELERGVCLVGPHRDDLILR 283
R+S+ + P E ++ R L R L L+ R E+ERGVCLVGPHRDDL L
Sbjct 241 RSSLGSSLPPEFTEPARVPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLELH 300
Query 284 LGDQPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAA 343
LGD PAKGFASHGE+WS A++LRLA + LLR DG +PVL+LDDVFAELD RRRALA A
Sbjct 301 LGDTPAKGFASHGESWSFALSLRLAGFALLRSDGSDPVLMLDDVFAELDRRRRRALAKVA 360
Query 344 ESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVL 384
AEQVL+TAAV ED+P DA R ++ R D G +S ++
Sbjct 361 LDAEQVLITAAVPEDVPEELDAVRFGVEARDTDRGRISHIV 401
>gi|167508523|gb|ABZ81468.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
Length=289
Score = 422 bits (1084), Expect = 7e-116, Method: Compositional matrix adjust.
Identities = 216/280 (78%), Positives = 247/280 (89%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LL+ LAARRDAE+ERG+CLVGPHRDDL L LG++ AKGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLSGLAARRDAEMERGMCLVGPHRDDLELWLGERVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|229491171|ref|ZP_04384999.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
SK121]
gi|229321909|gb|EEN87702.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
SK121]
Length=409
Score = 417 bits (1071), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 219/397 (56%), Positives = 285/397 (72%), Gaps = 12/397 (3%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR LRDFRSW + L+L PG TVF+G NG+GKTN++E+L Y +TL SHRVSAD P+
Sbjct 1 MFVRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSADAPM 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G+ A VVN+GRE +D+E+ G+ N+AR+N+S R R+V+G+L++V+FAPE
Sbjct 61 IRSGSASAFAGATVVNNGRELTIDVELIEGKSNRARINQSPTRRPREVLGILQSVMFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRG-- 178
DL LVRGDP DRRRYLD+L R P +AAVRA+Y++VLRQR+ALLK+ A RG RG
Sbjct 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGSRGGE 180
Query 179 ---VFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASM- 234
V TLEVWD LA HGA+L+A R++LV+ LAP + ++Y+ +APESR ASI Y++S+
Sbjct 181 SDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYKSSLG 240
Query 235 -----DVTGPSEQSDIDR-QLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQP 288
+ T P+ S ID L R LA R E++RGVCLVGPHRDDL L LGD P
Sbjct 241 SSLDPEFTDPARISGIDDVAYLEERFHHELAQMRSKEIDRGVCLVGPHRDDLELILGDSP 300
Query 289 AKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQ 348
AKGFASHGE+WS A++LRLA + LLR DG +PVL+LDDVFAELD RRRALAT A +AEQ
Sbjct 301 AKGFASHGESWSFALSLRLAGFALLRADGSDPVLMLDDVFAELDRRRRRALATVAATAEQ 360
Query 349 VLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVLP 385
VL+TAAV ED+P +A + ++ G +S ++P
Sbjct 361 VLITAAVPEDVPDELEAAKFGVEASDTGDGRISRIVP 397
>gi|226303493|ref|YP_002763451.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
PR4]
gi|259563669|sp|C0ZLE4.1|RECF_RHOE4 RecName: Full=DNA replication and repair protein recF
gi|226182608|dbj|BAH30712.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
PR4]
Length=409
Score = 416 bits (1068), Expect = 5e-114, Method: Compositional matrix adjust.
Identities = 218/397 (55%), Positives = 284/397 (72%), Gaps = 12/397 (3%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR LRDFRSW + L+L PG TVF+G NG+GKTN++E+L Y +TL SHRVS D P+
Sbjct 1 MFVRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSTDAPM 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G+ A VVN+GRE +D+E+ G+ N+AR+N+S R R+V+G+L++V+FAPE
Sbjct 61 IRSGSASAFAGATVVNNGRELTIDVELIEGKSNRARINQSPTRRPREVLGILQSVMFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRG-- 178
DL LVRGDP DRRRYLD+L R P +AAVRA+Y++VLRQR+ALLK+ A RG RG
Sbjct 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGSRGGE 180
Query 179 ---VFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASM- 234
V TLEVWD LA HGA+L+A R++LV+ LAP + ++Y+ +APESR ASI Y++S+
Sbjct 181 SDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYKSSLG 240
Query 235 -----DVTGPSEQSDIDR-QLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQP 288
+ T P+ S ID L R LA R E++RGVCLVGPHRDDL L LGD P
Sbjct 241 SSLDPEFTDPARISGIDDVAYLEERFHLELAQMRSKEIDRGVCLVGPHRDDLELVLGDSP 300
Query 289 AKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQ 348
AKGFASHGE+WS A++LRLA + LLR DG +PVL+LDDVFAELD RRRALAT A +AEQ
Sbjct 301 AKGFASHGESWSFALSLRLAGFALLRADGSDPVLMLDDVFAELDRRRRRALATVAATAEQ 360
Query 349 VLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVLP 385
VL+TAAV ED+P +A + ++ G +S ++P
Sbjct 361 VLITAAVPEDVPDELEAAKFGVEASDTGDGRISRIVP 397
>gi|167508527|gb|ABZ81470.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
Length=289
Score = 415 bits (1067), Expect = 6e-114, Method: Compositional matrix adjust.
Identities = 221/280 (79%), Positives = 249/280 (89%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ V +E +D DR L A LLA LAARRDAELERG+CLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGVAASAEVNDGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|333917682|ref|YP_004491263.1| DNA replication and repair protein recF [Amycolicicoccus subflavus
DQS3-9A1]
gi|333479903|gb|AEF38463.1| DNA replication and repair protein recF [Amycolicicoccus subflavus
DQS3-9A1]
Length=397
Score = 412 bits (1059), Expect = 6e-113, Method: Compositional matrix adjust.
Identities = 215/367 (59%), Positives = 273/367 (75%), Gaps = 2/367 (0%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VRHL L FRSW V+++L G TVF+GPNG+GKTNL+EA+ Y TL SHRVS+D PL
Sbjct 1 MFVRHLALHTFRSWYDVEIDLAAGCTVFLGPNGHGKTNLLEAVNYLATLSSHRVSSDQPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
++ G++ A ++ I VN GRE VDLE+ GR N+ARLN+S R RD++GV+R+VLFAPE
Sbjct 61 VQEGSEAARVTAIAVNAGRELRVDLELHAGRANRARLNQSPTRRPRDILGVVRSVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG-DRGV 179
DL LV+GDP +RRR+LDDL + RRP +AA R++Y+R+LRQRTALLKS+ G R+R D G
Sbjct 121 DLSLVKGDPGERRRFLDDLLVSRRPQLAATRSDYDRILRQRTALLKSLGGNRHRQPDPGA 180
Query 180 FDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGP 239
TL+VWD LA G+EL+ AR LV +L P V +Y +AP SR A+I YR S+
Sbjct 181 LATLDVWDGHLAHTGSELLGARFSLVEELGPFVADSYAQIAPGSRPATIRYRTSLGEDLL 240
Query 240 SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAW 299
+E + D+ L L AL A R+ EL+RGVCLVGPHRDDL L+LGDQPAKG+ASHGE+W
Sbjct 241 AEAVN-DKAALEEMFLDALRANRERELDRGVCLVGPHRDDLELQLGDQPAKGYASHGESW 299
Query 300 SLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDI 359
S A++LRL ++ LLR DG +PVLLLDDVFAELD RR ALA A +AEQVL+TAAV +DI
Sbjct 300 SFALSLRLGSFALLRSDGTDPVLLLDDVFAELDRKRRDALARHAATAEQVLITAAVEDDI 359
Query 360 PAGWDAR 366
P DAR
Sbjct 360 PMTLDAR 366
>gi|167508525|gb|ABZ81469.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
Length=289
Score = 410 bits (1055), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 219/280 (79%), Positives = 247/280 (89%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAARRDAELERG+CLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|325677517|ref|ZP_08157181.1| recombination protein F [Rhodococcus equi ATCC 33707]
gi|325551764|gb|EGD21462.1| recombination protein F [Rhodococcus equi ATCC 33707]
Length=408
Score = 410 bits (1053), Expect = 2e-112, Method: Compositional matrix adjust.
Identities = 217/393 (56%), Positives = 278/393 (71%), Gaps = 12/393 (3%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR LRDFRSW V ++L PG TVFVG NG+GKTNL+EAL Y +TL SHRVS+D PL
Sbjct 1 MFVRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +A ++ N GRE +D+EI G+ N+AR+N+S R R++VG+L+ VLFAPE
Sbjct 61 IRAGAPQAYAGALIANHGRELGIDIEINDGKANRARINQSPARRPREIVGILQTVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR--- 177
DL LVRGDP DRRR+LD+L RRP +A VRA+Y++VLRQR+ALLK+ GA RG R
Sbjct 121 DLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGARSSD 180
Query 178 --GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235
TL++WD LA HGA+L+A+R+ LV+ LAP + +Y+ LAPESR AS+ Y++S+
Sbjct 181 GASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYKSSLG 240
Query 236 VTGPSEQSDIDR-------QLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQP 288
+ P+E D R +LL L L+ R E+ERGVCLVGPHRDDL L LGDQP
Sbjct 241 TSLPTELLDPTREPEPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELILGDQP 300
Query 289 AKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQ 348
AKGFASHGE+WS A+++RL A+ LLR DG +PVL+LDDVFAELD RR ALA A AEQ
Sbjct 301 AKGFASHGESWSFALSMRLGAFFLLRDDGSDPVLMLDDVFAELDRKRRAALAGVAAQAEQ 360
Query 349 VLVTAAVLEDIPAGWDARRVHIDVRADDTGSMS 381
VL+TAAV ED+PA A R ++ + G +S
Sbjct 361 VLITAAVAEDVPAELSATRFGVEAHDTERGRLS 393
>gi|312137518|ref|YP_004004854.1| DNA replication and repair protein recf [Rhodococcus equi 103S]
gi|311886857|emb|CBH46165.1| DNA replication and repair protein RecF [Rhodococcus equi 103S]
Length=408
Score = 410 bits (1053), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 218/393 (56%), Positives = 277/393 (71%), Gaps = 12/393 (3%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR LRDFRSW V ++L PG TVFVG NG+GKTNL+EAL Y +TL SHRVS+D PL
Sbjct 1 MFVRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G +A ++ N GRE +D+EI GR N+AR+N+S R R++VG+L+ VLFAPE
Sbjct 61 IRAGAPQAYAGALIANHGRELGIDIEINDGRANRARINQSPARRPREIVGILQTVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR--- 177
DL LVRGDP DRRR+LD+L RRP +A VRA+Y++VLRQR+ALLK+ GA RG R
Sbjct 121 DLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGARSSD 180
Query 178 --GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235
TL++WD LA HGA+L+A+R+ LV+ LAP + +Y+ LAPESR AS+ Y++S+
Sbjct 181 GASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYKSSLG 240
Query 236 VTGPSEQSDIDR-------QLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQP 288
+ P E D R +LL L L+ R E+ERGVCLVGPHRDDL L LGDQP
Sbjct 241 TSLPPELLDPTREPDPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELILGDQP 300
Query 289 AKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQ 348
AKGFASHGE+WS A+++RL A+ LLR DG +PVL+LDDVFAELD RR ALA A AEQ
Sbjct 301 AKGFASHGESWSFALSMRLGAFFLLRDDGSDPVLMLDDVFAELDRKRRAALAGVAAQAEQ 360
Query 349 VLVTAAVLEDIPAGWDARRVHIDVRADDTGSMS 381
VL+TAAV ED+PA A R ++ + G +S
Sbjct 361 VLITAAVAEDVPAELSATRFGVEAHDTERGRLS 393
>gi|167508539|gb|ABZ81476.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis]
Length=289
Score = 409 bits (1052), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 218/280 (78%), Positives = 247/280 (89%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAARRDAELERG+CLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAA++LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAFELLRADESDPVLLLDDVFAELD 280
>gi|167508533|gb|ABZ81473.1| recombination protein F [Mycobacterium avium subsp. avium]
gi|167508535|gb|ABZ81474.1| recombination protein F [Mycobacterium avium subsp. silvaticum]
Length=289
Score = 408 bits (1049), Expect = 8e-112, Method: Compositional matrix adjust.
Identities = 217/280 (78%), Positives = 247/280 (89%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAARRDAE+ERG+CLVGPHRDDL L LG++ AKGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGERVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|167508537|gb|ABZ81475.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis]
Length=289
Score = 407 bits (1047), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 217/280 (78%), Positives = 246/280 (88%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAA RDAELERG+CLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAA++LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAFELLRADESDPVLLLDDVFAELD 280
>gi|167508541|gb|ABZ81477.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis]
gi|167508543|gb|ABZ81478.1| recombination protein F [Mycobacterium avium subsp. paratuberculosis]
Length=289
Score = 407 bits (1045), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 217/280 (78%), Positives = 246/280 (88%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNR VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRLPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAARRDAELERG+CLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAA++LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAFELLRADESDPVLLLDDVFAELD 280
>gi|167508529|gb|ABZ81471.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
Length=289
Score = 406 bits (1043), Expect = 4e-111, Method: Compositional matrix adjust.
Identities = 217/280 (78%), Positives = 246/280 (88%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG +TL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALETLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LA RRDAELERG+CLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGAAAAAEVNAGDRDYLEAALLAGLADRRDAELERGMCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|167508531|gb|ABZ81472.1| recombination protein F [Mycobacterium avium subsp. avium ATCC
25291]
Length=289
Score = 406 bits (1043), Expect = 4e-111, Method: Compositional matrix adjust.
Identities = 216/280 (78%), Positives = 246/280 (88%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DRAV+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRAVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAARRDAE+ERG+CLVGPHRDDL L LG++ KGF
Sbjct 181 SLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGERVPKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|167508521|gb|ABZ81467.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
Length=289
Score = 404 bits (1039), Expect = 9e-111, Method: Compositional matrix adjust.
Identities = 218/280 (78%), Positives = 245/280 (88%), Gaps = 0/280 (0%)
Query 53 RVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVL 112
RV D PLIR G DR V+STIVVNDGRECAVDLEIA GR NKARLNRS VRSTR+V+GVL
Sbjct 1 RVGTDAPLIRAGADRTVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVL 60
Query 113 RAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGAR 172
RAVLFAPEDL LVRGDP++RRRYLDDLA +RRPAIAAVRA+Y++VLRQRTALLKS+ GAR
Sbjct 61 RAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGAR 120
Query 173 YRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA 232
+RGDRG DTL+VWDSRLAE+GA+L+AARIDLVNQLAPEV+KAYQLLAP SR+ASIGYR+
Sbjct 121 HRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRS 180
Query 233 SMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGF 292
S+ +E + DR L A LLA LAARR AELERGVCLVGPHRDDL L LG+Q AKGF
Sbjct 181 SLGAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQVAKGF 240
Query 293 ASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELD 332
ASHGE+WSLA++LRLAAY+LLR D +PVLLLDDVFAELD
Sbjct 241 ASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFAELD 280
>gi|256374164|ref|YP_003097824.1| recombination protein F [Actinosynnema mirum DSM 43827]
gi|255918467|gb|ACU33978.1| DNA replication and repair protein RecF [Actinosynnema mirum
DSM 43827]
Length=371
Score = 402 bits (1034), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 221/370 (60%), Positives = 265/370 (72%), Gaps = 7/370 (1%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHL + DFRSW DL PG V VG NG+GKTNL+EAL Y TLGSHRV++D PL
Sbjct 1 MYVRHLQVTDFRSWEHADLAFEPGVNVLVGRNGHGKTNLVEALGYVATLGSHRVASDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IR G RAV+ T VVN+GRE V+LEI GR N+AR+NR V RDV+G+LR VLFAPE
Sbjct 61 IRSGAQRAVVRTAVVNEGRELLVELEITPGRANRARVNRGPVPRPRDVLGILRTVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
DL LVRGDP +RRR+LD+L +R P A VR++YERVLRQR ALLK+V R
Sbjct 121 DLSLVRGDPGERRRFLDELLTLRAPRYAGVRSDYERVLRQRGALLKTVRSVRS----AEL 176
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPS 240
TL+VWD LA+HGAEL+AAR+DLV +AP AY +APESR A + YR+S+ P
Sbjct 177 GTLDVWDGHLAKHGAELLAARLDLVAAIAPHAAAAYAEVAPESRPALLSYRSSLGEAFPG 236
Query 241 EQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300
DR++L LLA L R E++RGVCLVGPHRDDL L LG+ PAKG+ASHGE+WS
Sbjct 237 TH---DREVLEDALLAELHRLRPQEIDRGVCLVGPHRDDLELSLGELPAKGYASHGESWS 293
Query 301 LAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIP 360
A+ALRL AY+LLR +G EPVL+LDDVFAELD RRR LA A +AEQV +TAAV ED+P
Sbjct 294 FALALRLGAYELLREEGAEPVLVLDDVFAELDRGRRRQLAKVAAAAEQVFITAAVAEDVP 353
Query 361 AGWDARRVHI 370
DA R H+
Sbjct 354 EELDAARFHV 363
>gi|296137755|ref|YP_003644998.1| DNA replication and repair protein RecF [Tsukamurella paurometabola
DSM 20162]
gi|296025889|gb|ADG76659.1| DNA replication and repair protein RecF [Tsukamurella paurometabola
DSM 20162]
Length=401
Score = 395 bits (1014), Expect = 8e-108, Method: Compositional matrix adjust.
Identities = 216/377 (58%), Positives = 268/377 (72%), Gaps = 6/377 (1%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVR L L DFRSW VD+EL PG TVFVG NG+GKTNLIEAL Y TLGSHRVS D PL
Sbjct 1 MYVRRLRLHDFRSWDDVDIELGPGVTVFVGRNGFGKTNLIEALNYLATLGSHRVSTDQPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
IRVGT+ A + V N GRE +++I GR NKAR+N + R RD++G+L++VLFAPE
Sbjct 61 IRVGTESATVLATVHNAGRELTAEVDIVAGRANKARINTAPSRRPRDLLGILQSVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGD---R 177
DL LVRGDP RRR+LD+LAI+R P IAA +A+Y+RVL+QRTALLK+ A RG
Sbjct 121 DLSLVRGDPGGRRRFLDELAILRTPRIAAEKADYDRVLKQRTALLKTAYAAARRGGPDAE 180
Query 178 GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASM--D 235
+ TL+VWD +LA GAE++AAR+++V L P + AY LAP SR+A++ Y + + D
Sbjct 181 SMLATLDVWDVQLARFGAEMLAARLEVVAALQPHLTVAYGALAPHSRAATMEYTSGLFDD 240
Query 236 VTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASH 295
G + +L A +LA L R E++RGVCLVGPHRDDL LRLG++PAKGFASH
Sbjct 241 EFGGDPATATVAELEEA-MLAGLQRARSREIDRGVCLVGPHRDDLDLRLGNEPAKGFASH 299
Query 296 GEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAV 355
GE+WS A+ALRLA+ +LLR G +PVLLLDDVFAELD RR ALA A EQV+VTAAV
Sbjct 300 GESWSYALALRLASLELLRAGGSDPVLLLDDVFAELDTKRRTALADVAAETEQVIVTAAV 359
Query 356 LEDIPAGWDARRVHIDV 372
ED+P AR + V
Sbjct 360 PEDLPPTLRARTFEVTV 376
>gi|134096624|ref|YP_001102285.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338]
gi|291005722|ref|ZP_06563695.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338]
gi|166221860|sp|A4F5N5.1|RECF_SACEN RecName: Full=DNA replication and repair protein recF
gi|133909247|emb|CAL99359.1| DNA replication and repair protein [Saccharopolyspora erythraea
NRRL 2338]
Length=391
Score = 394 bits (1013), Expect = 9e-108, Method: Compositional matrix adjust.
Identities = 218/387 (57%), Positives = 261/387 (68%), Gaps = 18/387 (4%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+YVRHL + DFRSW DL PG TV VG NG GKTNL+EAL Y TLGSHRV+ D PL
Sbjct 1 MYVRHLQVTDFRSWPHADLTFEPGPTVLVGSNGQGKTNLVEALGYVATLGSHRVATDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
+R GT RAV+ VVN GRE V+LEI G+ N+AR+NR + RDV+G+LR VLFAPE
Sbjct 61 VRYGTQRAVVRAAVVNHGRELLVELEITPGKANRARINRGAAGKPRDVLGILRTVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVF 180
D+ +VRGDP +RRR+LDDL + R P A VR++Y+RVLRQR+ALLKS A+ G G
Sbjct 121 DMAMVRGDPGERRRFLDDLLVARAPRYAGVRSDYDRVLRQRSALLKSAGAAKRGGSGGDL 180
Query 181 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAY-------QLLAPESRSASIGYRAS 233
TLEVWD LA +GAEL+A R+DLV +AP V AY + AP R A + YR+S
Sbjct 181 RTLEVWDGHLARYGAELLAGRLDLVAAIAPHVTSAYANVAATAEETAPSGRVADVRYRSS 240
Query 234 MDVTGP-------SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGD 286
+ + P E +D+ ++L LLA L R ELERGV LVGPHRDDL L LG+
Sbjct 241 LGESLPEGYGVPRGEPADV--EVLEKALLAELERVRAQELERGVSLVGPHRDDLELMLGE 298
Query 287 QPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESA 346
PAKG+ASHGE+WS A+ALRLA+Y LL DG EPVL+LDDVFAELD RR LA A
Sbjct 299 LPAKGYASHGESWSFALALRLASYHLLAEDGAEPVLILDDVFAELDRRRRSRLAELVAGA 358
Query 347 EQVLVTAAVLEDIPAGWDARRVHIDVR 373
EQVLVTAAV ED+P V DVR
Sbjct 359 EQVLVTAAVAEDVPEELTG--VRFDVR 383
>gi|257054093|ref|YP_003131925.1| recombination protein F [Saccharomonospora viridis DSM 43017]
gi|256583965|gb|ACU95098.1| DNA replication and repair protein RecF [Saccharomonospora viridis
DSM 43017]
Length=390
Score = 394 bits (1013), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 216/372 (59%), Positives = 265/372 (72%), Gaps = 12/372 (3%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
+Y+RHL + DFRSW VDL L G TV VGPNG GKTNL+EA+ Y +TL SHRV+ D PL
Sbjct 1 MYLRHLQVTDFRSWEHVDLPLAQGPTVLVGPNGQGKTNLLEAIGYISTLSSHRVATDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
+R G DRA++ VVN+GRE V+LEIA GR N+AR+NR +V RDV+G+LR VLF+PE
Sbjct 61 VRHGCDRALVRAAVVNEGRELTVELEIAPGRANRARINRGAVGKPRDVLGILRTVLFSPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARY------R 174
DL LVRGDP++RRR+LDDL + R P A VR+EY+RVLRQR ALLKSV A
Sbjct 121 DLALVRGDPSERRRFLDDLLVQRAPRYAGVRSEYDRVLRQRNALLKSVGRAGGRRGAREE 180
Query 175 GDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASM 234
D TL+VWD+ LA GAEL+AAR++LV +L P V +Y +AP+SR A I YR+S+
Sbjct 181 TDPYALSTLQVWDNHLASAGAELLAARLNLVAELGPYVASSYADVAPDSRPARIAYRSSL 240
Query 235 -----DVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPA 289
+ G + + + L LL L R+ ELERGV L+GPHRDDL L LG+ PA
Sbjct 241 GGALPEGWGTPDGPEASTEQLGEILLRVLGEVRETELERGVSLIGPHRDDLELMLGEAPA 300
Query 290 KGFASHGEAWSLAVALRLAAYQLLRVD-GGEPVLLLDDVFAELDVMRRRALATAAESAEQ 348
KG+ASHGE+WS A+ALRLA+Y+LLR + GGEPVLLLDDVFAELD RR LA A AEQ
Sbjct 301 KGYASHGESWSFALALRLASYRLLRNESGGEPVLLLDDVFAELDSRRRARLAEVATKAEQ 360
Query 349 VLVTAAVLEDIP 360
VLVTAAV ED+P
Sbjct 361 VLVTAAVDEDVP 372
>gi|326383912|ref|ZP_08205596.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395]
gi|326197371|gb|EGD54561.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395]
Length=405
Score = 394 bits (1012), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 212/392 (55%), Positives = 271/392 (70%), Gaps = 14/392 (3%)
Query 1 VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60
++VR L LRDFRSW L PG TVFVG NG+GKTNL+E+L+Y TL SHRVS+D PL
Sbjct 1 MFVRELTLRDFRSWPQARFTLSPGTTVFVGRNGFGKTNLLESLFYVATLRSHRVSSDAPL 60
Query 61 IRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPE 120
+R G D A ++ V N+GRE V+L I NKA +N VR TR+V+G+LRAVLFAPE
Sbjct 61 VRTGADAARVTATVENEGRELTVELTIPAQGANKATINTRPVRRTREVLGILRAVLFAPE 120
Query 121 DLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGD---R 177
DL LVRGDP +RRR++D+L RP A + +Y+RVLRQR+ALLK+ A RG
Sbjct 121 DLALVRGDPGERRRFIDELVAQLRPLAAGAKVDYDRVLRQRSALLKTASAAMRRGGEQAE 180
Query 178 GVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRA----S 233
V TL+VWD++LAE GA++ A+R+ +V QLAP V AY +AP SR A I YR+ S
Sbjct 181 SVLSTLDVWDAQLAELGAQVTASRLAVVRQLAPFVTDAYSSIAPHSRPAHISYRSAAGES 240
Query 234 MDVTGPSEQSDID--RQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKG 291
+D + P ++ID R +LA RL+ R E++RG+CLVGPHRDDL L LGD+PAKG
Sbjct 241 VDAS-PGGDAEIDAIRDVLAQRLVEL----RSKEIDRGLCLVGPHRDDLFLGLGDEPAKG 295
Query 292 FASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLV 351
FASHGE+WS A++LRL + +LLR DG EP+++LDDVFAELDV RRR LA SA+Q+L+
Sbjct 296 FASHGESWSFALSLRLGSVELLRADGVEPIIMLDDVFAELDVTRRRLLAEFTASADQLLI 355
Query 352 TAAVLEDIPAGWDARRVHIDVRADDTGSMSVV 383
TAAV +DIP RR+ + V DD SV
Sbjct 356 TAAVPDDIPESIVGRRISVGVTDDDGPRHSVT 387
Lambda K H
0.322 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 749688914200
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40