BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0008c Length=145 Score E Sequences producing significant alignments: (Bits) Value gi|15607150|ref|NP_214522.1| hypothetical protein Rv0008c [Mycob... 281 3e-74 gi|15839381|ref|NP_334418.1| hypothetical protein MT0010 [Mycoba... 279 1e-73 gi|254366468|ref|ZP_04982512.1| membrane protein [Mycobacterium ... 276 5e-73 gi|289572584|ref|ZP_06452811.1| membrane protein [Mycobacterium ... 275 1e-72 gi|294995620|ref|ZP_06801311.1| hypothetical protein Mtub2_14222... 269 8e-71 gi|289567892|ref|ZP_06448119.1| LOW QUALITY PROTEIN: membrane pr... 252 1e-65 gi|342860271|ref|ZP_08716923.1| hypothetical protein MCOL_15380 ... 186 1e-45 gi|296167123|ref|ZP_06849532.1| conserved hypothetical protein [... 164 4e-39 gi|41406108|ref|NP_958944.1| hypothetical protein MAP0010c [Myco... 154 4e-36 gi|183980045|ref|YP_001848336.1| hypothetical protein MMAR_0010 ... 153 9e-36 gi|118465230|ref|YP_879313.1| hypothetical protein MAV_0012 [Myc... 153 9e-36 gi|240172108|ref|ZP_04750767.1| hypothetical protein MkanA1_2252... 152 2e-35 gi|254821352|ref|ZP_05226353.1| hypothetical protein MintA_15548... 150 6e-35 gi|108796990|ref|YP_637187.1| hypothetical protein Mmcs_0009 [My... 146 1e-33 gi|145221412|ref|YP_001132090.1| hypothetical protein Mflv_0818 ... 143 7e-33 gi|336462085|gb|EGO40927.1| Protein of unknown function (DUF2562... 142 1e-32 gi|315441708|ref|YP_004074587.1| hypothetical protein Mspyr1_001... 142 2e-32 gi|118615929|ref|YP_904261.1| hypothetical protein MUL_0012 [Myc... 141 3e-32 gi|120401044|ref|YP_950873.1| hypothetical protein Mvan_0016 [My... 138 3e-31 gi|118472943|ref|YP_884443.1| hypothetical protein MSMEG_0023 [M... 104 4e-21 gi|333988649|ref|YP_004521263.1| hypothetical protein JDM601_000... 79.3 2e-13 gi|169627131|ref|YP_001700780.1| hypothetical protein MAB_0024c ... 77.8 6e-13 gi|260818196|ref|XP_002604269.1| hypothetical protein BRAFLDRAFT... 36.2 1.6 gi|184201686|ref|YP_001855893.1| putative acyl-CoA dehydrogenase... 35.4 2.9 gi|258512784|ref|YP_003186218.1| hypothetical protein Aaci_2825 ... 35.0 3.5 gi|148656605|ref|YP_001276810.1| dehydrogenase-like protein [Ros... 34.3 5.7 gi|317489277|ref|ZP_07947794.1| hypothetical protein HMPREF1023_... 33.9 8.9 gi|325673820|ref|ZP_08153510.1| hypothetical protein HMPREF0724_... 33.5 9.3 >gi|15607150|ref|NP_214522.1| hypothetical protein Rv0008c [Mycobacterium tuberculosis H37Rv] gi|148659765|ref|YP_001281288.1| hypothetical protein MRA_0008 [Mycobacterium tuberculosis H37Ra] gi|167969475|ref|ZP_02551752.1| hypothetical membrane protein [Mycobacterium tuberculosis H37Ra] gi|307086737|ref|ZP_07495850.1| membrane protein [Mycobacterium tuberculosis SUMu012] gi|2829513|sp|P71577.1|Y008_MYCTU RecName: Full=Uncharacterized protein Rv0008c/MT0010 gi|1552562|emb|CAB02429.1| POSSIBLE MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148503917|gb|ABQ71726.1| putative membrane protein [Mycobacterium tuberculosis H37Ra] gi|308363884|gb|EFP52735.1| membrane protein [Mycobacterium tuberculosis SUMu012] Length=145 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR Sbjct 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA Sbjct 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 Query 121 FSIVRRSSRPEPSPRPPSVEVQPRS 145 FSIVRRSSRPEPSPRPPSVEVQPRS Sbjct 121 FSIVRRSSRPEPSPRPPSVEVQPRS 145 >gi|15839381|ref|NP_334418.1| hypothetical protein MT0010 [Mycobacterium tuberculosis CDC1551] gi|31791185|ref|NP_853678.1| hypothetical protein Mb0008c [Mycobacterium bovis AF2122/97] gi|121635891|ref|YP_976114.1| hypothetical protein BCG_0008c [Mycobacterium bovis BCG str. Pasteur 1173P2] 66 more sequence titles Length=145 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR Sbjct 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA Sbjct 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 Query 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 FSIVRRSSRPEPSPRPPSVEVQPR Sbjct 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 >gi|254366468|ref|ZP_04982512.1| membrane protein [Mycobacterium tuberculosis str. Haarlem] gi|134151980|gb|EBA44025.1| membrane protein [Mycobacterium tuberculosis str. Haarlem] Length=145 Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 143/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR Sbjct 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQR SKHHLWIFAGIAAAILAGGAVA Sbjct 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRCSKHHLWIFAGIAAAILAGGAVA 120 Query 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 FSIVRRSSRPEPSPRPPSVEVQPR Sbjct 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 >gi|289572584|ref|ZP_06452811.1| membrane protein [Mycobacterium tuberculosis K85] gi|289537015|gb|EFD41593.1| membrane protein [Mycobacterium tuberculosis K85] Length=145 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 143/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR Sbjct 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA Sbjct 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 Query 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 FSIVRRSSRPEPSPRPPSVEVQ R Sbjct 121 FSIVRRSSRPEPSPRPPSVEVQLR 144 >gi|294995620|ref|ZP_06801311.1| hypothetical protein Mtub2_14222 [Mycobacterium tuberculosis 210] gi|297632478|ref|ZP_06950258.1| hypothetical protein MtubK4_00050 [Mycobacterium tuberculosis KZN 4207] Length=141 Score = 269 bits (688), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 139/140 (99%), Positives = 140/140 (100%), Gaps = 0/140 (0%) Query 5 VETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLARE 64 +ETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLARE Sbjct 1 METRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLARE 60 Query 65 VAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIV 124 VAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIV Sbjct 61 VAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIV 120 Query 125 RRSSRPEPSPRPPSVEVQPR 144 RRSSRPEPSPRPPSVEVQPR Sbjct 121 RRSSRPEPSPRPPSVEVQPR 140 >gi|289567892|ref|ZP_06448119.1| LOW QUALITY PROTEIN: membrane protein [Mycobacterium tuberculosis T17] gi|289541645|gb|EFD45294.1| LOW QUALITY PROTEIN: membrane protein [Mycobacterium tuberculosis T17] Length=146 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR Sbjct 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA Sbjct 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 Query 121 FSIVRRSSRP 130 FSIVRRSSRP Sbjct 121 FSIVRRSSRP 130 >gi|342860271|ref|ZP_08716923.1| hypothetical protein MCOL_15380 [Mycobacterium colombiense CECT 3035] gi|342132649|gb|EGT85878.1| hypothetical protein MCOL_15380 [Mycobacterium colombiense CECT 3035] Length=144 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/147 (69%), Positives = 120/147 (82%), Gaps = 7/147 (4%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MS + ++RLTPR+RL RGL+YSA GPVDVTRG+ VGL +QSA+STA+ LRRRY+EGR Sbjct 1 MSAKTDSRLTPRQRLARGLSYSAQGPVDVTRGV----VGLSVQSAQSTASQLRRRYQEGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAR++AAAQETLAQEL AAQ+VV +LPQALQDAR +R W+FAG+A A+LAGGAVA Sbjct 57 LARDLAAAQETLAQELAAAQEVVTSLPQALQDARRAQRRGKRPWVFAGVAVAVLAGGAVA 116 Query 121 FSIVRRSSRP---EPSPRPPSVEVQPR 144 FS+VRRS R EP RPPSV+VQPR Sbjct 117 FSLVRRSVRAKPQEPQSRPPSVDVQPR 143 >gi|296167123|ref|ZP_06849532.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897527|gb|EFG77124.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=144 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/147 (72%), Positives = 120/147 (82%), Gaps = 7/147 (4%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MS + E+RLTPRERL RGL YS VGPVDVTRG+ VGLG+QSA+STA+ +RR+Y+EGR Sbjct 1 MSAKAESRLTPRERLARGLTYSTVGPVDVTRGV----VGLGVQSAQSTASQIRRKYQEGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LA+E+AAAQETLAQEL AAQDVVANLPQALQDAR RR W+FAG A A+LAGGAVA Sbjct 57 LAQELAAAQETLAQELAAAQDVVANLPQALQDARRARRRTKRPWVFAGAAVAVLAGGAVA 116 Query 121 FSIVRRSSRP---EPSPRPPSVEVQPR 144 FS+VRRS R +P RPPSVEVQPR Sbjct 117 FSLVRRSVRAKPQDPQSRPPSVEVQPR 143 >gi|41406108|ref|NP_958944.1| hypothetical protein MAP0010c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394456|gb|AAS02327.1| hypothetical protein MAP_0010c [Mycobacterium avium subsp. paratuberculosis K-10] Length=144 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/147 (67%), Positives = 112/147 (77%), Gaps = 7/147 (4%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 M + E RLTPRERL RGL YS +GP+D+TRG+ GL +QSARSTA LRRRYREGR Sbjct 1 MRAKAEDRLTPRERLARGLTYSTLGPLDLTRGV----AGLSVQSARSTAEQLRRRYREGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAR++AAAQETLAQEL AAQ+VV LPQALQDAR +R W+ AG+A A+LAGGA A Sbjct 57 LARDLAAAQETLAQELAAAQEVVTGLPQALQDARRAQRRGKRPWVIAGVAVAVLAGGAAA 116 Query 121 FSIVRRSSRP---EPSPRPPSVEVQPR 144 FSIVRRS R EP RPPSV+VQPR Sbjct 117 FSIVRRSVREKPQEPQSRPPSVDVQPR 143 >gi|183980045|ref|YP_001848336.1| hypothetical protein MMAR_0010 [Mycobacterium marinum M] gi|183173371|gb|ACC38481.1| conserved hypothetical protein [Mycobacterium marinum M] Length=142 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 102/145 (71%), Positives = 120/145 (83%), Gaps = 5/145 (3%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSEQ E RLTPRERLTRGL ++AVGPVDVTRG+ VGLG+ SA+STA+ LRRRYR+GR Sbjct 1 MSEQAEARLTPRERLTRGLTHTAVGPVDVTRGV----VGLGVHSAQSTASELRRRYRQGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDA-RTQRRSKHHLWIFAGIAAAILAGGAV 119 LAREVAAAQE +AQEL AAQ+VVANLPQ +Q+A R Q RSK I + ++AGGAV Sbjct 57 LAREVAAAQEAIAQELAAAQEVVANLPQVIQEARRKQGRSKRPWVIAGAVTVVVVAGGAV 116 Query 120 AFSIVRRSSRPEPSPRPPSVEVQPR 144 AF++VRRSS+PEPSPRPPSV+VQPR Sbjct 117 AFTVVRRSSQPEPSPRPPSVDVQPR 141 >gi|118465230|ref|YP_879313.1| hypothetical protein MAV_0012 [Mycobacterium avium 104] gi|118166517|gb|ABK67414.1| conserved hypothetical protein [Mycobacterium avium 104] Length=144 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 99/147 (68%), Positives = 111/147 (76%), Gaps = 7/147 (4%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 M + E RLTPRERL RGL YS +GP+D+TRG+ GL QSARSTA LRRRYREGR Sbjct 1 MRAKAEDRLTPRERLARGLTYSTLGPLDLTRGV----AGLSGQSARSTAEQLRRRYREGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 LAR++AAAQETLAQEL AAQ+VV LPQALQDAR +R WI AG+A A+LAGGA A Sbjct 57 LARDLAAAQETLAQELAAAQEVVTGLPQALQDARRAQRRGKRPWIIAGVAVAVLAGGAAA 116 Query 121 FSIVRRSSRP---EPSPRPPSVEVQPR 144 FSIVRRS R EP RPPSV+VQPR Sbjct 117 FSIVRRSVREKPQEPQSRPPSVDVQPR 143 >gi|240172108|ref|ZP_04750767.1| hypothetical protein MkanA1_22520 [Mycobacterium kansasii ATCC 12478] Length=144 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/147 (77%), Positives = 127/147 (87%), Gaps = 7/147 (4%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MSE+VETRLTPRERLTRGL YSAVGPVDVTRG+ VGLG+QSA+STA+ +RRRYREGR Sbjct 1 MSEKVETRLTPRERLTRGLTYSAVGPVDVTRGV----VGLGVQSAQSTASEVRRRYREGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDA-RTQRR-SKHHLW-IFAGIAAAILAGG 117 LARE+AAAQETLAQEL AAQ+VVANLPQ LQ+A R+QRR SK +W I ++AGG Sbjct 57 LAREIAAAQETLAQELAAAQEVVANLPQVLQEARRSQRRGSKKRVWVIAGAATVVVVAGG 116 Query 118 AVAFSIVRRSSRPEPSPRPPSVEVQPR 144 AVAF+IVRRSSRPEPSPRPPSV+VQPR Sbjct 117 AVAFTIVRRSSRPEPSPRPPSVDVQPR 143 >gi|254821352|ref|ZP_05226353.1| hypothetical protein MintA_15548 [Mycobacterium intracellulare ATCC 13950] Length=144 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/148 (72%), Positives = 117/148 (80%), Gaps = 9/148 (6%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MS + E+RLTPRERL RGL YS GPVDVTRG+ VGL +QSA+STAA LRRRYREGR Sbjct 1 MSAKTESRLTPRERLARGLTYSTRGPVDVTRGV----VGLSVQSAQSTAAQLRRRYREGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDA-RTQRRSKHHLWIFAGIAAAILAGGAV 119 LA ++AAAQE LAQEL AAQ+VV NLPQALQ+A R QRR K L I AG+A A+LAGGAV Sbjct 57 LAADIAAAQEALAQELAAAQEVVTNLPQALQEARRAQRRGKRPL-IIAGVAVAVLAGGAV 115 Query 120 AFSIVRRSSRP---EPSPRPPSVEVQPR 144 AFSIVRRS R EP RPPSVEVQPR Sbjct 116 AFSIVRRSVRAKPQEPQSRPPSVEVQPR 143 >gi|108796990|ref|YP_637187.1| hypothetical protein Mmcs_0009 [Mycobacterium sp. MCS] gi|119866074|ref|YP_936026.1| hypothetical protein Mkms_0017 [Mycobacterium sp. KMS] gi|126432622|ref|YP_001068313.1| hypothetical protein Mjls_0009 [Mycobacterium sp. JLS] gi|108767409|gb|ABG06131.1| putative membrane protein [Mycobacterium sp. MCS] gi|119692163|gb|ABL89236.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126232422|gb|ABN95822.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=137 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/138 (61%), Positives = 105/138 (77%), Gaps = 5/138 (3%) Query 7 TRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVA 66 T LTPR+RL RGL Y+AVGPVDVTRG+L G+G+ SA++TAA LRRRY+ G+L RE+A Sbjct 4 TPLTPRQRLARGLKYTAVGPVDVTRGVL----GVGVDSAQATAAELRRRYQSGQLRRELA 59 Query 67 AAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRR 126 AA+ETL EL AAQ+ V+ LP+AL AR + R + L + G+ A +LA GAV FSIVRR Sbjct 60 AARETLVAELVAAQEAVSGLPEALTGARARNRRRKRL-LMVGVGAGVLAVGAVTFSIVRR 118 Query 127 SSRPEPSPRPPSVEVQPR 144 S +PEPSP PPSVEV P+ Sbjct 119 SMKPEPSPLPPSVEVTPK 136 >gi|145221412|ref|YP_001132090.1| hypothetical protein Mflv_0818 [Mycobacterium gilvum PYR-GCK] gi|145213898|gb|ABP43302.1| putative membrane protein [Mycobacterium gilvum PYR-GCK] Length=133 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/144 (57%), Positives = 102/144 (71%), Gaps = 12/144 (8%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MS RLTPR+RL+RGL YS VGPVDVTRG VGLG++SARS+A+ RYR + Sbjct 1 MSSTTRERLTPRQRLSRGLKYSTVGPVDVTRG----AVGLGVESARSSASWAGDRYRRSK 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 +AR+ L EL AAQ VVANLP+ +Q+AR RR L + AG+A A+LAGGAV Sbjct 57 VARQ-------LRTELAAAQQVVANLPEVVQNARKPRRRVRPL-LLAGVAVAVLAGGAVT 108 Query 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 FSI+RRS++P+PSP PPSVEV P+ Sbjct 109 FSILRRSAQPDPSPLPPSVEVTPK 132 >gi|336462085|gb|EGO40927.1| Protein of unknown function (DUF2562) [Mycobacterium avium subsp. paratuberculosis S397] Length=152 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/155 (62%), Positives = 110/155 (71%), Gaps = 15/155 (9%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 M + E RLTPRERL RGL YS +GP+D+TRG+ GL +QSARSTA LRRRYREGR Sbjct 1 MRAKAEDRLTPRERLARGLTYSTLGPLDLTRGV----AGLSVQSARSTAEQLRRRYREGR 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIF--------AGIAAA 112 AR++ AAQETLAQEL AAQ+VV LPQALQDAR +R W+ AG+A A Sbjct 57 PARDLTAAQETLAQELAAAQEVVTGLPQALQDARRAQRRGKRPWVIAGVAVAVLAGVAVA 116 Query 113 ILAGGAVAFSIVRRSSRP---EPSPRPPSVEVQPR 144 +LAGGA AFSIVRRS R EP RPPSV+VQPR Sbjct 117 VLAGGAAAFSIVRRSVREKPQEPQSRPPSVDVQPR 151 >gi|315441708|ref|YP_004074587.1| hypothetical protein Mspyr1_00140 [Mycobacterium sp. Spyr1] gi|315260011|gb|ADT96752.1| hypothetical protein Mspyr1_00140 [Mycobacterium sp. Spyr1] Length=133 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/144 (57%), Positives = 101/144 (71%), Gaps = 12/144 (8%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MS RLTPR+RL+RGL YS VGPVDVTRG VGLG++SARS+A+ RYR + Sbjct 1 MSSTTRERLTPRQRLSRGLKYSTVGPVDVTRG----AVGLGVESARSSASWAGDRYRRSK 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 +AR+ L EL AAQ VVANLP+ +Q+AR RR L + AG+ A+LAGGAV Sbjct 57 VARQ-------LRTELAAAQQVVANLPEVVQNARKPRRRVRPL-LLAGVGVAVLAGGAVT 108 Query 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 FSI+RRS++P+PSP PPSVEV P+ Sbjct 109 FSILRRSAQPDPSPLPPSVEVTPK 132 >gi|118615929|ref|YP_904261.1| hypothetical protein MUL_0012 [Mycobacterium ulcerans Agy99] gi|118568039|gb|ABL02790.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=134 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/137 (70%), Positives = 113/137 (83%), Gaps = 5/137 (3%) Query 9 LTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAA 68 +TPRERLTRGL Y+AVGPVDVTRG+ VGLG+ SA+STA+ LRRRY +GRLAREVAAA Sbjct 1 MTPRERLTRGLTYTAVGPVDVTRGV----VGLGVHSAQSTASELRRRYPQGRLAREVAAA 56 Query 69 QETLAQELTAAQDVVANLPQALQDARTQR-RSKHHLWIFAGIAAAILAGGAVAFSIVRRS 127 QE +AQEL AAQ+VVANLPQ +Q+AR +R RSK I + ++AGGAVAF++VRRS Sbjct 57 QEAIAQELAAAQEVVANLPQVIQEARRKRGRSKRPWVIAGAVTVVVVAGGAVAFTVVRRS 116 Query 128 SRPEPSPRPPSVEVQPR 144 S+PEPSPRPPSV VQPR Sbjct 117 SQPEPSPRPPSVNVQPR 133 >gi|120401044|ref|YP_950873.1| hypothetical protein Mvan_0016 [Mycobacterium vanbaalenii PYR-1] gi|119953862|gb|ABM10867.1| putative membrane protein [Mycobacterium vanbaalenii PYR-1] Length=144 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/148 (59%), Positives = 107/148 (73%), Gaps = 9/148 (6%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 MS RLTP +RL+RGL YS VGP+DVTRG VGLG++SARS+A +YR + Sbjct 1 MSSTTRVRLTPSQRLSRGLMYSTVGPIDVTRG----AVGLGVESARSSAVWAGNKYRRSK 56 Query 61 LAR----EVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAG 116 +AR E+AAAQE +A E+ AAQ+VVA LPQAL+ AR RR K L + AGIA +LAG Sbjct 57 MARQLKAELAAAQEAIAVEVAAAQEVVAGLPQALEKARRSRRRKRPL-LLAGIAVVVLAG 115 Query 117 GAVAFSIVRRSSRPEPSPRPPSVEVQPR 144 GAV FSIVRRS++PEPSP PPSVE+ P+ Sbjct 116 GAVTFSIVRRSTQPEPSPLPPSVEISPK 143 >gi|118472943|ref|YP_884443.1| hypothetical protein MSMEG_0023 [Mycobacterium smegmatis str. MC2 155] gi|118174230|gb|ABK75126.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=136 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 93/150 (62%), Gaps = 21/150 (14%) Query 1 MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR 60 M + + RL PR+RLTRGL Y+AVGPVD+TRG+L G+G +A++TAA LRRRY G+ Sbjct 1 MPARADVRLAPRQRLTRGLKYTAVGPVDITRGVL----GIGADTAQATAAELRRRYASGK 56 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQ-----RRSKHHLWIFAGIAAAILA 115 L R +L AA + VA LP+ +Q+A + ++ + + A +A +L Sbjct 57 LQR-----------QLAAAAEAVAALPETIQEAVQEVVSPPKKRRRRPLLIAAVAVTVLG 105 Query 116 GGAVAFSIVRRSSRP-EPSPRPPSVEVQPR 144 GGA AFSIVRR SRP EP PSVEV P+ Sbjct 106 GGAAAFSIVRRRSRPQEPPTLAPSVEVAPK 135 >gi|333988649|ref|YP_004521263.1| hypothetical protein JDM601_0009 [Mycobacterium sp. JDM601] gi|333484617|gb|AEF34009.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=142 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/141 (53%), Positives = 95/141 (68%), Gaps = 6/141 (4%) Query 6 ETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREV 65 ET+LT RERLTRGLA++A GPVDV RG VGLG + + A LR+RYR+ RLA V Sbjct 6 ETQLTHRERLTRGLAHTAGGPVDVARG----AVGLGGAAVQRGAVQLRQRYRDSRLADHV 61 Query 66 AAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAG-IAAAILAGGAVAFSIV 124 A A + A+EL AAQ+VV+ LP L+ ++RR + W+ AG + A+L GGAVA +I Sbjct 62 ADAADAAARELAAAQEVVSGLPDVLEGRSSRRRLR-RSWVIAGAVGTALLVGGAVAVAIS 120 Query 125 RRSSRPEPSPRPPSVEVQPRS 145 R S EPSPRPPSV+ PR+ Sbjct 121 RASRPEEPSPRPPSVDAHPRT 141 >gi|169627131|ref|YP_001700780.1| hypothetical protein MAB_0024c [Mycobacterium abscessus ATCC 19977] gi|169239098|emb|CAM60126.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=134 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/144 (41%), Positives = 85/144 (60%), Gaps = 18/144 (12%) Query 2 SEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGR- 60 SE+ +LT +RL RGL +A+ P+DV+RG G+ GL + ++AAG R R G+ Sbjct 7 SEEPAVKLTSGQRLARGLKEAALAPIDVSRG--TAGLSFGLAKSATSAAG--RLLRRGKA 62 Query 61 LAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVA 120 ++ EV Q+ +A DVV LP+ + AR +R+ L A + +L GAVA Sbjct 63 VSSEV---QDAVA-------DVVDTLPEVVSGAR-KRKLPRALTGLAVVG--LLGAGAVA 109 Query 121 FSIVRRSSRPEPSPRPPSVEVQPR 144 FS++RRS +PEPSP PSV+ QP+ Sbjct 110 FSVLRRSGQPEPSPLAPSVDPQPQ 133 >gi|260818196|ref|XP_002604269.1| hypothetical protein BRAFLDRAFT_125240 [Branchiostoma floridae] gi|229289595|gb|EEN60280.1| hypothetical protein BRAFLDRAFT_125240 [Branchiostoma floridae] Length=648 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/94 (33%), Positives = 43/94 (46%), Gaps = 2/94 (2%) Query 6 ETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREV 65 E R PR +L+R L V + G L LG+ GL S LRR ++ +A E Sbjct 4 ELRRLPRSQLSRLLQEGRFAQVRIPDGHL-LGLKTGLNLNWSQCRDLRRWMKDYNIAVES 62 Query 66 AAAQETLAQELTAAQDVVA-NLPQALQDARTQRR 98 +A EL +A DV+A LP +D +R Sbjct 63 ERTSRNIASELLSATDVMAEQLPFTTKDEEGGKR 96 >gi|184201686|ref|YP_001855893.1| putative acyl-CoA dehydrogenase [Kocuria rhizophila DC2201] gi|183581916|dbj|BAG30387.1| putative acyl-CoA dehydrogenase [Kocuria rhizophila DC2201] Length=404 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/84 (34%), Positives = 38/84 (46%), Gaps = 7/84 (8%) Query 68 AQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRS 127 E+ E T D V +P ART H LW A + A A G A S+V+++ Sbjct 222 CSESFELEATTPADAVFTVPFETISARTMLPGAHCLWASAWLGMATQA-GLTARSVVQKA 280 Query 128 SRPEPSPRPPS------VEVQPRS 145 +R P PPS +EVQ +S Sbjct 281 ARKTPGTPPPSALRLAELEVQLQS 304 >gi|258512784|ref|YP_003186218.1| hypothetical protein Aaci_2825 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479510|gb|ACV59829.1| hypothetical protein Aaci_2825 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length=396 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 40/121 (34%), Positives = 53/121 (44%), Gaps = 15/121 (12%) Query 24 VGPVDVTRGLLELGVGLGLQSARSTAAGLRRRY-REGRLAREVAAAQETLAQELTAAQDV 82 +GP+ V G LGVGLG AA L Y G + R A L A Sbjct 212 LGPIGVILGAALLGVGLG-------AAALMLVYPFLGYVLRIAFRAY----LRLLATSRG 260 Query 83 VANLPQALQDARTQRRSKHHLWIFAGIAAAILAGG--AVAFSIVRRSSRPEPSPRPPSVE 140 V L Q L +AR Q + +W+F GIA A+ A G A+ + R + E S +V+ Sbjct 261 VGVLTQ-LANARVQGSPRGDMWVFTGIAIALCAAGIAVWAWKLWRGGAAEEASETGDTVQ 319 Query 141 V 141 V Sbjct 320 V 320 >gi|148656605|ref|YP_001276810.1| dehydrogenase-like protein [Roseiflexus sp. RS-1] gi|148568715|gb|ABQ90860.1| dehydrogenase-like protein [Roseiflexus sp. RS-1] Length=728 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 26/73 (36%), Positives = 40/73 (55%), Gaps = 10/73 (13%) Query 60 RLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHH-LWIFAGIAAAILAGGA 118 RLA E+ A E A+ A++ + ++P+ + R RRSKH W +AG+ GA Sbjct 661 RLAEELRADPELFARRKAEAKERLKSIPEMAKGVRAARRSKHSAAWGWAGV-------GA 713 Query 119 VAFSIV--RRSSR 129 VA S++ RR +R Sbjct 714 VALSLIALRRQAR 726 >gi|317489277|ref|ZP_07947794.1| hypothetical protein HMPREF1023_01493 [Eggerthella sp. 1_3_56FAA] gi|316911678|gb|EFV33270.1| hypothetical protein HMPREF1023_01493 [Eggerthella sp. 1_3_56FAA] Length=174 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 27/74 (37%), Positives = 40/74 (55%), Gaps = 3/74 (4%) Query 9 LTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAA 68 L R R TRG + V GLL + VG+GLQ A ++ A + R+ + L ++ A Sbjct 10 LRSRLRDTRGFMIAEQLTSIVFIGLLCVAVGVGLQVAMNSYASITRQAQADALLQQ---A 66 Query 69 QETLAQELTAAQDV 82 E ++ ELT A+DV Sbjct 67 VEVVSDELTYARDV 80 >gi|325673820|ref|ZP_08153510.1| hypothetical protein HMPREF0724_11292 [Rhodococcus equi ATCC 33707] gi|325555085|gb|EGD24757.1| hypothetical protein HMPREF0724_11292 [Rhodococcus equi ATCC 33707] Length=294 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/42 (46%), Positives = 25/42 (60%), Gaps = 0/42 (0%) Query 29 VTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQE 70 ++RG +GVG+G Q A AAG+ R GRL VAA +E Sbjct 110 LSRGRTRIGVGVGWQQAEYAAAGIPFERRFGRLEETVAACRE 151 Lambda K H 0.317 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128154014136 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40