BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0022c

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607164|ref|NP_214536.1|  transcriptional regulatory protein ...   283    8e-75
gi|339630105|ref|YP_004721747.1|  WhiB family transcriptional reg...   281    2e-74
gi|289756081|ref|ZP_06515459.1|  transcriptional regulatory prote...   280    6e-74
gi|183980076|ref|YP_001848367.1|  transcriptional regulatory prot...   223    5e-57
gi|118615954|ref|YP_904286.1|  transcriptional regulatory protein...   219    1e-55
gi|254819086|ref|ZP_05224087.1|  transcription factor WhiB family...   217    5e-55
gi|118462762|ref|YP_879340.1|  transcription factor WhiB family p...   216    7e-55
gi|41406131|ref|NP_958967.1|  hypothetical protein MAP0033c [Myco...   215    2e-54
gi|296167103|ref|ZP_06849513.1|  transcription factor WhiB family...   215    2e-54
gi|240172396|ref|ZP_04751055.1|  transcriptional regulatory prote...   214    4e-54
gi|342860250|ref|ZP_08716902.1|  transcription factor WhiB family...   202    1e-50
gi|289441389|ref|ZP_06431133.1|  transcriptional regulator whib-l...   172    2e-41
gi|333988678|ref|YP_004521292.1|  transcriptional regulator [Myco...   162    2e-38
gi|119854977|ref|YP_935582.1|  transcription factor WhiB [Mycobac...  40.8    0.060
gi|240171131|ref|ZP_04749790.1|  hypothetical protein MkanA1_1760...  39.7    0.16 
gi|226363423|ref|YP_002781205.1|  WhiB family regulatory protein ...  38.1    0.39 
gi|226362406|ref|YP_002780184.1|  WhiB family regulatory protein ...  38.1    0.43 
gi|120402741|ref|YP_952570.1|  transcription factor WhiB [Mycobac...  37.7    0.64 
gi|54023451|ref|YP_117693.1|  putative transcriptional regulator ...  37.0    0.86 
gi|108802437|ref|YP_642633.1|  transcription factor WhiB [Mycobac...  37.0    0.97 
gi|111020352|ref|YP_703324.1|  WhiB family transcriptional regula...  36.6    1.5  
gi|296166739|ref|ZP_06849163.1|  WhiB4 family protein [Mycobacter...  35.8    2.2  
gi|29831540|ref|NP_826174.1|  WhiB-family transcriptional regulat...  35.4    2.9  
gi|254820830|ref|ZP_05225831.1|  WhiB4 [Mycobacterium intracellul...  35.0    3.8  
gi|152964214|ref|YP_001359998.1|  transcription factor WhiB [Kine...  35.0    3.8  
gi|339633673|ref|YP_004725315.1|  transcriptional regulator [Myco...  35.0    4.0  
gi|111023156|ref|YP_706128.1|  WhiB family transcriptional regula...  35.0    4.0  
gi|240172243|ref|ZP_04750902.1|  putative transcriptional regulat...  35.0    4.1  
gi|15843299|ref|NP_338336.1|  WhiB-related protein [Mycobacterium...  34.7    4.3  
gi|41406491|ref|NP_959327.1|  WhiB4 [Mycobacterium avium subsp. p...  34.7    4.9  
gi|226304767|ref|YP_002764725.1|  WhiB family regulatory protein ...  34.7    5.1  
gi|308232529|ref|ZP_07416374.2|  transcriptional regulator whib-l...  34.7    5.6  
gi|229492284|ref|ZP_04386091.1|  WhiB-family transcriptional regu...  34.3    6.2  
gi|289755807|ref|ZP_06515185.1|  LOW QUALITY PROTEIN: conserved h...  34.3    6.5  
gi|226305417|ref|YP_002765375.1|  WhiB family regulatory protein ...  34.3    6.7  
gi|118466521|ref|YP_879729.1|  transcription factor WhiB [Mycobac...  33.9    7.9  
gi|118462777|ref|YP_883496.1|  transcription factor WhiB [Mycobac...  33.9    8.0  
gi|319949575|ref|ZP_08023620.1|  WhiB family transcriptional regu...  33.9    8.2  
gi|119952298|ref|YP_949948.1|  WhiB family transcription factor [...  33.9    8.2  
gi|118473042|ref|YP_884469.1|  transcription factor WhiB family p...  33.9    8.5  
gi|226363602|ref|YP_002781384.1|  WhiB family regulatory protein ...  33.9    8.6  
gi|284992817|ref|YP_003411371.1|  transcription factor WhiB [Geod...  33.9    8.7  
gi|111021256|ref|YP_704228.1|  WhiB family transcriptional regula...  33.9    8.7  
gi|226359462|ref|YP_002777239.1|  WhiB family regulatory protein ...  33.9    9.0  
gi|332669687|ref|YP_004452695.1|  transcription factor WhiB [Cell...  33.9    9.4  
gi|169627513|ref|YP_001701162.1|  putative transcriptional regula...  33.5    9.8  
gi|226303953|ref|YP_002763911.1|  WhiB family regulatory protein ...  33.5    10.0 


>gi|15607164|ref|NP_214536.1| transcriptional regulatory protein WHIB-like WHIB5 [Mycobacterium 
tuberculosis H37Rv]
 gi|31791199|ref|NP_853692.1| putative transcriptional regulatory protein WHIB-like WHIB5 [Mycobacterium 
bovis AF2122/97]
 gi|121635932|ref|YP_976155.1| putative transcriptional regulatory protein whiB-like whiB5 [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 66 more sequence titles
 Length=139

 Score =  283 bits (723),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH
Sbjct  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP
Sbjct  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120

Query  121  VPGVVVHLPIAQVGPQPAA  139
            VPGVVVHLPIAQVGPQPAA
Sbjct  121  VPGVVVHLPIAQVGPQPAA  139


>gi|339630105|ref|YP_004721747.1| WhiB family transcriptional regulator [Mycobacterium africanum 
GM041182]
 gi|339329461|emb|CCC25096.1| putative transcriptional regulatory protein WhiB-like WhiB5 [Mycobacterium 
africanum GM041182]
Length=139

 Score =  281 bits (719),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%), Gaps = 0/138 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH
Sbjct  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP
Sbjct  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120

Query  121  VPGVVVHLPIAQVGPQPA  138
            VPGVVVHLPIAQVGPQPA
Sbjct  121  VPGVVVHLPIAQVGPQPA  138


>gi|289756081|ref|ZP_06515459.1| transcriptional regulatory protein whib-like [Mycobacterium tuberculosis 
EAS054]
 gi|289696668|gb|EFD64097.1| transcriptional regulatory protein whib-like [Mycobacterium tuberculosis 
EAS054]
Length=139

 Score =  280 bits (716),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            MAHPCATDPELWFGYPDDDGSDGAAKARAYER ATQARIQCLRRCPLLQQRRCAQHAVEH
Sbjct  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERLATQARIQCLRRCPLLQQRRCAQHAVEH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP
Sbjct  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120

Query  121  VPGVVVHLPIAQVGPQPAA  139
            VPGVVVHLPIAQVGPQPAA
Sbjct  121  VPGVVVHLPIAQVGPQPAA  139


>gi|183980076|ref|YP_001848367.1| transcriptional regulatory protein (Whib-like), WhiB5 [Mycobacterium 
marinum M]
 gi|183173402|gb|ACC38512.1| transcriptional regulatory protein (Whib-like), WhiB5 [Mycobacterium 
marinum M]
Length=138

 Score =  223 bits (569),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 109/139 (79%), Positives = 120/139 (87%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            M++PCAT+PELWFGYPDDD  DGAAKARAYERSAT+ARIQCLRRCPL QQR CA+ AV+H
Sbjct  1    MSNPCATNPELWFGYPDDDSGDGAAKARAYERSATEARIQCLRRCPLAQQRLCAERAVKH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+KLPGGQYRKR QLA AHDVLRRIA GEIN+RQLP+N ALLARNE  +  P
Sbjct  61   REEYGVWAGVKLPGGQYRKRGQLAEAHDVLRRIAAGEINARQLPENTALLARNE-RDAVP  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            V  VV HLP+ QVGPQ AA
Sbjct  120  VTAVVWHLPVTQVGPQTAA  138


>gi|118615954|ref|YP_904286.1| transcriptional regulatory protein (Whib-like), WhiB5 [Mycobacterium 
ulcerans Agy99]
 gi|118568064|gb|ABL02815.1| transcriptional regulatory protein (Whib-like), WhiB5 [Mycobacterium 
ulcerans Agy99]
Length=138

 Score =  219 bits (557),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 107/139 (77%), Positives = 118/139 (85%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            M++PCAT+PELWFGYPDDD  DGAAKARAYERSAT+ARIQCLRRCPL QQR CA+ AV+H
Sbjct  1    MSNPCATNPELWFGYPDDDSGDGAAKARAYERSATEARIQCLRRCPLAQQRLCAERAVKH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+ LPGGQYRKR QLA AHDVLRRIA GEIN+RQLP+N ALLARNE  +  P
Sbjct  61   REEYGVWAGVNLPGGQYRKRGQLAEAHDVLRRIAAGEINARQLPENTALLARNE-RDAVP  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            V  V  HLP+ QVGPQ AA
Sbjct  120  VTAVGWHLPVTQVGPQTAA  138


>gi|254819086|ref|ZP_05224087.1| transcription factor WhiB family protein [Mycobacterium intracellulare 
ATCC 13950]
Length=138

 Score =  217 bits (552),  Expect = 5e-55, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 124/139 (90%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            M HPCA +PELWFGYPDDDG DGAAKARAYERSAT+AR+QCLRRCPL QQRRCAQHA+ H
Sbjct  1    MGHPCAANPELWFGYPDDDGGDGAAKARAYERSATEARLQCLRRCPLAQQRRCAQHAIAH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+KLPGGQYRKR+QLA AHDVLRRIA GEINSRQLP+NAALLAR+E  E  P
Sbjct  61   REEYGVWAGVKLPGGQYRKRDQLAHAHDVLRRIASGEINSRQLPENAALLARHEH-EAVP  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            V  VV+HLP+AQVGP+ AA
Sbjct  120  VAAVVLHLPLAQVGPRTAA  138


>gi|118462762|ref|YP_879340.1| transcription factor WhiB family protein [Mycobacterium avium 
104]
 gi|254773085|ref|ZP_05214601.1| transcription factor WhiB family protein [Mycobacterium avium 
subsp. avium ATCC 25291]
 gi|118164049|gb|ABK64946.1| transcription factor WhiB family protein [Mycobacterium avium 
104]
Length=138

 Score =  216 bits (551),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 123/139 (89%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            M HPCA +PELWFGYPDDDG DGAAKARAYERSAT+ARIQCLRRCPL QQRRCAQHAV H
Sbjct  1    MGHPCAANPELWFGYPDDDGGDGAAKARAYERSATEARIQCLRRCPLAQQRRCAQHAVAH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+KLPGGQYRKREQLA AH+VLRRIA GEINSRQLP+NAALLAR+E  E   
Sbjct  61   REEYGVWAGVKLPGGQYRKREQLAHAHEVLRRIASGEINSRQLPENAALLARHEH-ETVA  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
             P VV+HLP+A+VGP+ AA
Sbjct  120  APAVVLHLPLAKVGPRSAA  138


>gi|41406131|ref|NP_958967.1| hypothetical protein MAP0033c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|8920257|emb|CAB96430.1| hypothetical protein [Mycobacterium avium subsp. paratuberculosis]
 gi|41394479|gb|AAS02350.1| hypothetical protein MAP_0033c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458632|gb|EGO37596.1| Transcription factor WhiB [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=138

 Score =  215 bits (547),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 112/139 (81%), Positives = 122/139 (88%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            M HPCA +PELWFGYPDDDG DGAAKARAYERSAT+ARIQCLRRCPL QQRRCAQHAV H
Sbjct  1    MGHPCAANPELWFGYPDDDGGDGAAKARAYERSATEARIQCLRRCPLAQQRRCAQHAVAH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYG WAG+KLPGGQYRKREQLA AH+VLRRIA GEINSRQLP+NAALLAR+E  E   
Sbjct  61   REEYGAWAGVKLPGGQYRKREQLAHAHEVLRRIASGEINSRQLPENAALLARHEH-ETVA  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
             P VV+HLP+A+VGP+ AA
Sbjct  120  APAVVLHLPLAKVGPRSAA  138


>gi|296167103|ref|ZP_06849513.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897545|gb|EFG77141.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=138

 Score =  215 bits (547),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 112/139 (81%), Positives = 122/139 (88%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            M HPCA +PELWFGYPDDDG DGAAKARAYERSA +AR+QCLRRCPL QQRRCAQHA+ H
Sbjct  1    MGHPCAANPELWFGYPDDDGGDGAAKARAYERSAVEARLQCLRRCPLAQQRRCAQHAIAH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+KLPGGQYRKREQLA AHDVLRRIA GEINSRQLP+NAALLA +E  E   
Sbjct  61   REEYGVWAGVKLPGGQYRKREQLAQAHDVLRRIASGEINSRQLPENAALLATHEH-EAVA  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            VP VV+HLP+AQVGP+ AA
Sbjct  120  VPAVVLHLPLAQVGPRSAA  138


>gi|240172396|ref|ZP_04751055.1| transcriptional regulatory protein (Whib-like), WhiB5 [Mycobacterium 
kansasii ATCC 12478]
Length=138

 Score =  214 bits (544),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 105/139 (76%), Positives = 117/139 (85%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            MA PC  +PELWFGYPDDD  DGAAKARAYERSAT+ARIQCLRRCPL QQR CA+ AV++
Sbjct  1    MATPCTGNPELWFGYPDDDSGDGAAKARAYERSATEARIQCLRRCPLAQQRLCAERAVKY  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+KLPGGQYRKR QLA AH+VLRRIA GEIN+RQLP+NAALLAR E  +  P
Sbjct  61   REEYGVWAGVKLPGGQYRKRTQLAQAHEVLRRIAAGEINARQLPENAALLARTE-RDARP  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            V  VV+HLP  QVGP+ AA
Sbjct  120  VTAVVLHLPATQVGPRSAA  138


>gi|342860250|ref|ZP_08716902.1| transcription factor WhiB family protein [Mycobacterium colombiense 
CECT 3035]
 gi|342132628|gb|EGT85857.1| transcription factor WhiB family protein [Mycobacterium colombiense 
CECT 3035]
Length=138

 Score =  202 bits (514),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 110/139 (80%), Positives = 122/139 (88%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            MAHPCA +PELWFGYPDDDG DGAAKARAYERSAT+ARIQCLRRCPL QQRRCA HA+ H
Sbjct  1    MAHPCAANPELWFGYPDDDGGDGAAKARAYERSATEARIQCLRRCPLAQQRRCAAHAIAH  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
            R EYGVWAG+KLPGGQYRKR+QLA AH+VLRRIA GEIN+RQLP+NAALLAR+E  E   
Sbjct  61   REEYGVWAGVKLPGGQYRKRDQLAQAHEVLRRIASGEINARQLPENAALLARHEH-EAVA  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            V  VV+HLP+AQV P+ AA
Sbjct  120  VAAVVLHLPLAQVKPRSAA  138


>gi|289441389|ref|ZP_06431133.1| transcriptional regulator whib-like whiB5 [Mycobacterium tuberculosis 
T46]
 gi|289567907|ref|ZP_06448134.1| transcriptional regulator whib-like whiB5 [Mycobacterium tuberculosis 
T17]
 gi|289748485|ref|ZP_06507863.1| transcriptional regulator whib-like whiB5 [Mycobacterium tuberculosis 
T92]
 gi|289414308|gb|EFD11548.1| transcriptional regulator whib-like whiB5 [Mycobacterium tuberculosis 
T46]
 gi|289541660|gb|EFD45309.1| transcriptional regulator whib-like whiB5 [Mycobacterium tuberculosis 
T17]
 gi|289689072|gb|EFD56501.1| transcriptional regulator whib-like whiB5 [Mycobacterium tuberculosis 
T92]
Length=81

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
           MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH
Sbjct  1   MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60

Query  61  RVEYGVWAGIKLPGGQYRKRE  81
           RVEYGVWAGIKLPGGQYRKRE
Sbjct  61  RVEYGVWAGIKLPGGQYRKRE  81


>gi|333988678|ref|YP_004521292.1| transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333484646|gb|AEF34038.1| transcriptional regulatory protein Whib-like protein [Mycobacterium 
sp. JDM601]
Length=138

 Score =  162 bits (410),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 94/139 (68%), Positives = 106/139 (77%), Gaps = 1/139 (0%)

Query  1    MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEH  60
            MA PCAT+PELWFGYPD DG+DGAAKARAYE+SAT+AR+ CLRRCPL QQRRCA  AVE 
Sbjct  1    MAPPCATNPELWFGYPDADGADGAAKARAYEQSATEARLLCLRRCPLAQQRRCAALAVER  60

Query  61   RVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTP  120
              EYGVWAG+KLPGGQYRKR +LA AH VLR IA G INSR+LPDN  LL  +E  ++ P
Sbjct  61   GEEYGVWAGVKLPGGQYRKRAELAQAHAVLREIAAGNINSRELPDNQVLLTNHERQQL-P  119

Query  121  VPGVVVHLPIAQVGPQPAA  139
            V   V HL   + G   AA
Sbjct  120  VAVAVFHLAADRFGSPSAA  138


>gi|119854977|ref|YP_935582.1| transcription factor WhiB [Mycobacterium sp. KMS]
 gi|119697695|gb|ABL94767.1| transcription factor WhiB [Mycobacterium sp. KMS]
Length=234

 Score = 40.8 bits (94),  Expect = 0.060, Method: Compositional matrix adjust.
 Identities = 27/70 (39%), Positives = 38/70 (55%), Gaps = 19/70 (27%)

Query  5   CATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEY  64
           C TDP+ WF    D G+  AA A            +CL  CP   +R CAQ A++++  +
Sbjct  19  CHTDPDRWF----DSGARTAALA------------ECLA-CP--HRRWCAQRALKYQPRW  59

Query  65  GVWAGIKLPG  74
           G+WAGI +PG
Sbjct  60  GMWAGIWIPG  69


>gi|240171131|ref|ZP_04749790.1| hypothetical protein MkanA1_17601 [Mycobacterium kansasii ATCC 
12478]
 gi|296165360|ref|ZP_06847901.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899251|gb|EFG78716.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=145

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 32/105 (31%), Positives = 46/105 (44%), Gaps = 23/105 (21%)

Query  5    CATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEY  64
            C  DPEL+F        +   K RA +R            CP   + RC  +AV     +
Sbjct  39   CQEDPELFF--------NPRTKHRAIKRC---------NDCPF--RGRCGYNAVATGATH  79

Query  65   GVWAGIKLPGGQYRKRE----QLAAAHDVLRRIAGGEINSRQLPD  105
            G+W G+ LPG Q +  +    +LAA  +  RR   G+I    LP+
Sbjct  80   GIWGGVILPGAQPKALKPVYARLAAQFEQRRRTELGDIRVAPLPE  124


>gi|226363423|ref|YP_002781205.1| WhiB family regulatory protein [Rhodococcus opacus B4]
 gi|226241912|dbj|BAH52260.1| putative WhiB family regulatory protein [Rhodococcus opacus B4]
Length=240

 Score = 38.1 bits (87),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 20/42 (48%), Positives = 28/42 (67%), Gaps = 3/42 (7%)

Query  33   SATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPG  74
            S T+AR  C   CP+  +R CAQ A++++  YGVWAG+ L G
Sbjct  63   SITKARKFC-NHCPV--RRECAQSALDNKEYYGVWAGVYLSG  101


>gi|226362406|ref|YP_002780184.1| WhiB family regulatory protein [Rhodococcus opacus B4]
 gi|226240891|dbj|BAH51239.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=98

 Score = 38.1 bits (87),  Expect = 0.43, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 36/65 (56%), Gaps = 8/65 (12%)

Query  28  RAYERSATQARIQCL-RRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQLAAA  86
           R + R A Q +   L R CP+L Q  C  +A+++RVE+G+W G+       R+R  L  A
Sbjct  29  RLFVRGAAQRKAAALCRHCPVLMQ--CGAYALDNRVEFGIWGGM-----TERQRRALLEA  81

Query  87  HDVLR  91
           H  +R
Sbjct  82  HPRVR  86


>gi|120402741|ref|YP_952570.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
 gi|119955559|gb|ABM12564.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=101

 Score = 37.7 bits (86),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 20/45 (45%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQLAAAH  87
           R CP++ +  CA  A++HRVEYGVW G+       R+R  L  AH
Sbjct  44  RGCPVITE--CAADALDHRVEYGVWGGM-----TERQRRALLKAH  81


>gi|54023451|ref|YP_117693.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54014959|dbj|BAD56329.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=244

 Score = 37.0 bits (84),  Expect = 0.86, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (56%), Gaps = 16/65 (24%)

Query  8    DPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVW  67
            DPELW  +PD D SD AA           ARI CL  CP+  + +C +HA ++   +GVW
Sbjct  84   DPELW--HPDRD-SDPAA----------DARITCLS-CPV--RDKCGEHAAKNAEPHGVW  127

Query  68   AGIKL  72
             G ++
Sbjct  128  GGYRM  132


>gi|108802437|ref|YP_642633.1| transcription factor WhiB [Mycobacterium sp. MCS]
 gi|119855263|ref|YP_935866.1| transcription factor WhiB [Mycobacterium sp. KMS]
 gi|108772856|gb|ABG11577.1| transcription factor WhiB [Mycobacterium sp. MCS]
 gi|119697980|gb|ABL95051.1| transcription factor WhiB [Mycobacterium sp. KMS]
Length=110

 Score = 37.0 bits (84),  Expect = 0.97, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 30/52 (58%), Gaps = 2/52 (3%)

Query  44  RCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAG  95
           RCP+  +RRCA  AV +  E G +AG+ LP        + AAA D LR IAG
Sbjct  46  RCPV--RRRCATEAVLNDEETGTYAGVYLPQNISANVGRRAAAIDELRVIAG  95


>gi|111020352|ref|YP_703324.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819882|gb|ABG95166.1| possible transcriptional regulator, WhiB family protein [Rhodococcus 
jostii RHA1]
Length=107

 Score = 36.6 bits (83),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 25/78 (33%), Positives = 38/78 (49%), Gaps = 16/78 (20%)

Query  14  GYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKLP  73
           G PD     GAA+ +A             R CP+L +  C  +A+++RVE+G+W G+   
Sbjct  28  GDPDQLFVTGAAQRKA---------AALCRHCPVLME--CGAYALDNRVEFGIWGGMT--  74

Query  74  GGQYRKREQLAAAHDVLR  91
               R+R  L A H  +R
Sbjct  75  ---ERQRRALLATHPEVR  89


>gi|296166739|ref|ZP_06849163.1| WhiB4 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897909|gb|EFG77491.1| WhiB4 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=116

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 27/42 (65%), Gaps = 3/42 (7%)

Query  30  YERSATQARIQCL-RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           + R A Q +   + R CP++Q+  C   A++H+VE+GVW G+
Sbjct  46  FVRGAAQRKAAVICRHCPVMQE--CGADALDHKVEFGVWGGM  85


>gi|29831540|ref|NP_826174.1| WhiB-family transcriptional regulator [Streptomyces avermitilis 
MA-4680]
 gi|29608656|dbj|BAC72709.1| putative WhiB-family transcriptional regulator; putative role 
in cell cycle control [Streptomyces avermitilis MA-4680]
Length=109

 Score = 35.4 bits (80),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 17/100 (17%)

Query  7    TDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGV  66
             D  L+F +P+  G  GAA++ A E SA +    C+R CP+  Q  CA HA+  R  YGV
Sbjct  26   VDSSLFF-HPE--GERGAARS-ARENSAKEV---CMR-CPVRAQ--CAAHALAVREPYGV  75

Query  67   WAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDN  106
            W G+     +  + E +  A +   R+     NSR    N
Sbjct  76   WGGLT----EDEREELMGRARN---RLVSAATNSRDTASN  108


>gi|254820830|ref|ZP_05225831.1| WhiB4 [Mycobacterium intracellulare ATCC 13950]
Length=116

 Score = 35.0 bits (79),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 28/42 (67%), Gaps = 3/42 (7%)

Query  30  YERSATQARIQCL-RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           + R A Q +   + R CP++Q+  CA  A++++VE+GVW G+
Sbjct  46  FVRGAAQRKAAVICRHCPVMQE--CAADALDNKVEFGVWGGM  85


>gi|152964214|ref|YP_001359998.1| transcription factor WhiB [Kineococcus radiotolerans SRS30216]
 gi|151358731|gb|ABS01734.1| transcription factor WhiB [Kineococcus radiotolerans SRS30216]
Length=101

 Score = 35.0 bits (79),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 36/63 (58%), Gaps = 10/63 (15%)

Query  8   DPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVW  67
           DPEL+F +P+ +   GAA+     R A  A +     CP+L+Q  C QH + HR  YGVW
Sbjct  27  DPELFF-HPELE--RGAARQ---HRDA--AALAVCAECPVLRQ--CRQHVLTHRENYGVW  76

Query  68  AGI  70
            G+
Sbjct  77  GGL  79


>gi|339633673|ref|YP_004725315.1| transcriptional regulator [Mycobacterium africanum GM041182]
 gi|339333029|emb|CCC28758.1| putative transcriptional regulatory protein WHIB-like WHIB4 [Mycobacterium 
africanum GM041182]
Length=118

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 28/42 (67%), Gaps = 3/42 (7%)

Query  30  YERSATQARIQCL-RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           + R A Q +   + R CP++Q+  CA  A++++VE+GVW G+
Sbjct  46  FVRGAAQRKAAVICRHCPVMQE--CAADALDNKVEFGVWGGM  85


>gi|111023156|ref|YP_706128.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|226365662|ref|YP_002783445.1| WhiB family regulatory protein [Rhodococcus opacus B4]
 gi|110822686|gb|ABG97970.1| possible transcriptional regulator, WhiB family protein [Rhodococcus 
jostii RHA1]
 gi|226244152|dbj|BAH54500.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=97

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 21/59 (36%), Positives = 31/59 (53%), Gaps = 9/59 (15%)

Query  13  FGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIK  71
           F +PD +      + RA  +  T+A+  C RRCP+L Q  C  HA+     YG+W G+ 
Sbjct  31  FFHPDGE------RGRARAQRETRAKEMC-RRCPVLAQ--CRNHALSVSEPYGIWGGMS  80


>gi|240172243|ref|ZP_04750902.1| putative transcriptional regulatory protein whiB-like [Mycobacterium 
kansasii ATCC 12478]
Length=116

 Score = 35.0 bits (79),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 13/28 (47%), Positives = 22/28 (79%), Gaps = 2/28 (7%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           R CP++Q+  CA  A++++VE+GVW G+
Sbjct  60  RHCPVMQE--CAADALDNKVEFGVWGGM  85


>gi|15843299|ref|NP_338336.1| WhiB-related protein [Mycobacterium tuberculosis CDC1551]
 gi|31794852|ref|NP_857345.1| putative transcriptional regulatory protein whiB-like whiB4 [Mycobacterium 
bovis AF2122/97]
 gi|57117144|ref|NP_218198.2| transcriptional regulatory protein WHIB-like WHIB4 [Mycobacterium 
tuberculosis H37Rv]
 57 more sequence titles
 Length=118

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 13/28 (47%), Positives = 22/28 (79%), Gaps = 2/28 (7%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           R CP++Q+  CA  A++++VE+GVW G+
Sbjct  60  RHCPVMQE--CAADALDNKVEFGVWGGM  85


>gi|41406491|ref|NP_959327.1| WhiB4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254773452|ref|ZP_05214968.1| WhiB4 [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41394840|gb|AAS02710.1| WhiB4 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=116

 Score = 34.7 bits (78),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 27/42 (65%), Gaps = 3/42 (7%)

Query  30  YERSATQARIQCL-RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           + R A Q +   + R CP++Q+  C   A+++RVE+GVW G+
Sbjct  46  FVRGAAQRKAAVICRHCPVMQE--CGADALDNRVEFGVWGGM  85


>gi|226304767|ref|YP_002764725.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
 gi|226183882|dbj|BAH31986.1| putative WhiB family regulatory protein [Rhodococcus erythropolis 
PR4]
Length=105

 Score = 34.7 bits (78),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 36/64 (57%), Gaps = 10/64 (15%)

Query  7   TDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGV  66
           TDP L++   DD    G+ +A+      + A++ C R CP++Q  RC  HA++    +G+
Sbjct  27  TDPALFY---DDTNERGSRRAK----RESSAKLVCAR-CPVVQ--RCLVHAIQTGEPHGI  76

Query  67  WAGI  70
           W G+
Sbjct  77  WGGM  80


>gi|308232529|ref|ZP_07416374.2| transcriptional regulator whib-like whiB4 [Mycobacterium tuberculosis 
SUMu001]
 gi|308371414|ref|ZP_07424914.2| transcriptional regulator whib-like whiB4 [Mycobacterium tuberculosis 
SUMu003]
 gi|308372705|ref|ZP_07429580.2| transcriptional regulator whib-like whiB4 [Mycobacterium tuberculosis 
SUMu005]
 14 more sequence titles
 Length=100

 Score = 34.7 bits (78),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 13/28 (47%), Positives = 22/28 (79%), Gaps = 2/28 (7%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           R CP++Q+  CA  A++++VE+GVW G+
Sbjct  42  RHCPVMQE--CAADALDNKVEFGVWGGM  67


>gi|229492284|ref|ZP_04386091.1| WhiB-family transcriptional regulator; role in cell cycle control 
[Rhodococcus erythropolis SK121]
 gi|229320693|gb|EEN86507.1| WhiB-family transcriptional regulator; role in cell cycle control 
[Rhodococcus erythropolis SK121]
Length=105

 Score = 34.3 bits (77),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 36/64 (57%), Gaps = 10/64 (15%)

Query  7   TDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGV  66
           TDP L++   DD    G+ +A+      + A++ C R CP++Q  RC  HA++    +G+
Sbjct  27  TDPALFY---DDTNERGSRRAK----RESSAKLVCAR-CPVVQ--RCLVHAIQTGEPHGI  76

Query  67  WAGI  70
           W G+
Sbjct  77  WGGM  80


>gi|289755807|ref|ZP_06515185.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis EAS054]
 gi|289696394|gb|EFD63823.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis EAS054]
Length=119

 Score = 34.3 bits (77),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 13/28 (47%), Positives = 22/28 (79%), Gaps = 2/28 (7%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           R CP++Q+  CA  A++++VE+GVW G+
Sbjct  60  RHCPVMQE--CAADALDNKVEFGVWGGM  85


>gi|226305417|ref|YP_002765375.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
 gi|229489583|ref|ZP_04383446.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
 gi|226184532|dbj|BAH32636.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
 gi|229323680|gb|EEN89438.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
Length=98

 Score = 34.3 bits (77),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 27/82 (33%), Positives = 38/82 (47%), Gaps = 15/82 (18%)

Query  13  FGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKL  72
           F +PD +      + RA  +  T+A+  C R+CP+L Q  C  HA+     YG+W     
Sbjct  31  FFHPDGE------RGRARAQRETRAKEMC-RQCPVLMQ--CRSHALTVAEPYGIW-----  76

Query  73  PGGQYRKREQLAAAHDVLRRIA  94
            GG      +L A H    RIA
Sbjct  77  -GGMSETERELHARHRRTTRIA  97


>gi|118466521|ref|YP_879729.1| transcription factor WhiB [Mycobacterium avium 104]
 gi|118167808|gb|ABK68705.1| Transcription factor WhiB [Mycobacterium avium 104]
 gi|336460832|gb|EGO39717.1| Transcription factor WhiB [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=70

 Score = 33.9 bits (76),  Expect = 7.9, Method: Compositional matrix adjust.
 Identities = 13/28 (47%), Positives = 21/28 (75%), Gaps = 2/28 (7%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           R CP++Q+  C   A+++RVE+GVW G+
Sbjct  14  RHCPVMQE--CGADALDNRVEFGVWGGM  39


>gi|118462777|ref|YP_883496.1| transcription factor WhiB [Mycobacterium avium 104]
 gi|118164064|gb|ABK64961.1| Transcription factor WhiB [Mycobacterium avium 104]
Length=84

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 21/65 (33%), Positives = 35/65 (54%), Gaps = 10/65 (15%)

Query  6   ATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYG  65
             D  ++F +PD +      + RA  +   +A+  C R+CP++Q+  C  HA+E    YG
Sbjct  7   GVDSSMFF-HPDGE------RGRARMQREQRAKEMC-RQCPVIQE--CRSHALEVGEPYG  56

Query  66  VWAGI  70
           VW G+
Sbjct  57  VWGGL  61


>gi|319949575|ref|ZP_08023620.1| WhiB family transcriptional regulator [Dietzia cinnamea P4]
 gi|319436751|gb|EFV91826.1| WhiB family transcriptional regulator [Dietzia cinnamea P4]
Length=125

 Score = 33.9 bits (76),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 26/80 (33%), Positives = 42/80 (53%), Gaps = 10/80 (12%)

Query  30   YERSATQARIQCL-RRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQLAAAHD  88
            + R A Q +   + R CP+L Q  C   A+++RVE+GVW G+       R+R  L   H 
Sbjct  53   FVRGAAQRKAASICRHCPVLLQ--CRADALDNRVEFGVWGGMT-----ERQRRALLKQHP  105

Query  89   VLRRIAGGEINSRQLPDNAA  108
             +R  A  +  ++QL  ++A
Sbjct  106  EVRSWA--DFFAQQLERHSA  123


>gi|119952298|ref|YP_949948.1| WhiB family transcription factor [Arthrobacter aurescens TC1]
 gi|119951428|gb|ABM10338.1| putative transcription factor WhiB family [Arthrobacter aurescens 
TC1]
Length=136

 Score = 33.9 bits (76),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 36/63 (58%), Gaps = 12/63 (19%)

Query  8   DPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVW  67
           DP+L+F      G+ G A+A+  E     AR+ CL  CP+  + RC ++A++   E+G+W
Sbjct  25  DPDLFFPI----GTRGPARAQFEE-----ARVICLS-CPV--RTRCLEYAMKTGAEFGMW  72

Query  68  AGI  70
            G 
Sbjct  73  GGT  75


>gi|118473042|ref|YP_884469.1| transcription factor WhiB family protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118174329|gb|ABK75225.1| transcription factor WhiB family protein [Mycobacterium smegmatis 
str. MC2 155]
Length=97

 Score = 33.9 bits (76),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 23/69 (34%), Positives = 31/69 (45%), Gaps = 20/69 (28%)

Query  5   CATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEY  64
           C +DPE W   PD                  QA++ C R CP  ++  CA+ A E     
Sbjct  14  CTSDPERWTSAPD-----------------AQAKVIC-RECP--RRWLCAREACELPRAE  53

Query  65  GVWAGIKLP  73
           G+WAGI +P
Sbjct  54  GLWAGIMVP  62


>gi|226363602|ref|YP_002781384.1| WhiB family regulatory protein [Rhodococcus opacus B4]
 gi|226242091|dbj|BAH52439.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=111

 Score = 33.9 bits (76),  Expect = 8.6, Method: Compositional matrix adjust.
 Identities = 25/75 (34%), Positives = 38/75 (51%), Gaps = 14/75 (18%)

Query  13  FGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKL  72
           F +PD +      + RA E    +A++ C R CP+L Q  C +HA+     YG+W G+  
Sbjct  31  FFHPDRE------RGRAREMRDFRAKMIC-RGCPVLVQ--CREHALSVGEPYGIWGGLSA  81

Query  73  PGGQYRKREQLAAAH  87
                 +RE+L A H
Sbjct  82  -----NEREELLANH  91


>gi|284992817|ref|YP_003411371.1| transcription factor WhiB [Geodermatophilus obscurus DSM 43160]
 gi|284066062|gb|ADB77000.1| transcription factor WhiB [Geodermatophilus obscurus DSM 43160]
Length=99

 Score = 33.9 bits (76),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 24/67 (36%), Positives = 35/67 (53%), Gaps = 9/67 (13%)

Query  5   CATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEY  64
           C  +    F +PD  G  G A+AR   +SA +A      RCP+++   C +HA+  R  Y
Sbjct  23  CRGESTALFFHPD--GERGPARAR--RQSAAKA---VCSRCPVIES--CLKHALSVREPY  73

Query  65  GVWAGIK  71
           GVW G+ 
Sbjct  74  GVWGGMS  80


>gi|111021256|ref|YP_704228.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820786|gb|ABG96070.1| possible transcriptional regulator, WhiB family protein [Rhodococcus 
jostii RHA1]
Length=111

 Score = 33.9 bits (76),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 25/75 (34%), Positives = 38/75 (51%), Gaps = 14/75 (18%)

Query  13  FGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKL  72
           F +PD +      + RA E    +A++ C R CP+L Q  C +HA+     YG+W G+  
Sbjct  31  FFHPDRE------RGRAREMRDFRAKMIC-RGCPVLVQ--CREHALSVGEPYGIWGGLSA  81

Query  73  PGGQYRKREQLAAAH  87
                 +RE+L A H
Sbjct  82  -----NEREELLANH  91


>gi|226359462|ref|YP_002777239.1| WhiB family regulatory protein [Rhodococcus opacus B4]
 gi|226237946|dbj|BAH48294.1| putative WhiB family regulatory protein [Rhodococcus opacus B4]
Length=137

 Score = 33.9 bits (76),  Expect = 9.0, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 32/65 (50%), Gaps = 10/65 (15%)

Query  7   TDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGV  66
           TD  L+F     DG  G  +AR  ER+A Q      + CP+L Q  C  HA+     YG+
Sbjct  22  TDTNLFFS---PDGERGNVRAR-RERAAKQI----CQDCPVLAQ--CRAHALTTTETYGI  71

Query  67  WAGIK  71
           W G+ 
Sbjct  72  WGGMS  76


>gi|332669687|ref|YP_004452695.1| transcription factor WhiB [Cellulomonas fimi ATCC 484]
 gi|332338725|gb|AEE45308.1| transcription factor WhiB [Cellulomonas fimi ATCC 484]
Length=116

 Score = 33.9 bits (76),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 33/74 (45%), Gaps = 20/74 (27%)

Query  4   PCAT-DPELWFGYPDDDGSDGAAKARAYERSATQARIQCL-RRCPLLQQRRCAQHAVEHR  61
           PC T DPELWF                 E++A   R + L R CP+++   C   A+E  
Sbjct  41  PCRTNDPELWFA----------------EQTAVVERAKALCRECPIIEG--CLAGALERA  82

Query  62  VEYGVWAGIKLPGG  75
             +GVW G    GG
Sbjct  83  EPWGVWGGQVFIGG  96


>gi|169627513|ref|YP_001701162.1| putative transcriptional regulator WhiB [Mycobacterium abscessus 
ATCC 19977]
 gi|169239480|emb|CAM60508.1| Putative transcriptional regulator WhiB [Mycobacterium abscessus]
Length=112

 Score = 33.5 bits (75),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 24/74 (33%), Positives = 38/74 (52%), Gaps = 16/74 (21%)

Query  14  GYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKLP  73
           G PD+    GAA+ +A         + C R CP++ +  C   A+++RVE+GVW G+   
Sbjct  35  GDPDELFVRGAAQRKAA--------VIC-RHCPVMME--CGADALDNRVEFGVWGGLT--  81

Query  74  GGQYRKREQLAAAH  87
               R+R  +  AH
Sbjct  82  ---ERQRRAMLKAH  92


>gi|226303953|ref|YP_002763911.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
 gi|226183068|dbj|BAH31172.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
Length=107

 Score = 33.5 bits (75),  Expect = 10.0, Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 20/28 (72%), Gaps = 2/28 (7%)

Query  43  RRCPLLQQRRCAQHAVEHRVEYGVWAGI  70
           R CP+L Q  C   A+++RVE+GVW G+
Sbjct  50  RHCPVLMQ--CGADALDNRVEFGVWGGM  75



Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131443546824




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40