BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0023

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607165|ref|NP_214537.1|  transcriptional regulatory protein ...   508    3e-142
gi|340625056|ref|YP_004743508.1|  putative transcriptional regula...   506    9e-142
gi|289445548|ref|ZP_06435292.1|  transcriptional regulator [Mycob...   506    1e-141
gi|339293101|gb|AEJ45212.1|  transcriptional regulator [Mycobacte...   452    3e-125
gi|118463481|ref|YP_879341.1|  hypothetical protein MAV_0041 [Myc...   437    6e-121
gi|342860249|ref|ZP_08716901.1|  transcriptional regulatory prote...   436    2e-120
gi|41406133|ref|NP_958969.1|  hypothetical protein MAP0035 [Mycob...   435    3e-120
gi|336459450|gb|EGO38392.1|  Helix-turn-helix protein [Mycobacter...   433    1e-119
gi|254819085|ref|ZP_05224086.1|  helix-turn-helix domain-containi...   430    1e-118
gi|183980077|ref|YP_001848368.1|  transcriptional regulatory prot...   427    7e-118
gi|296167102|ref|ZP_06849512.1|  transcriptional regulatory prote...   425    3e-117
gi|254366483|ref|ZP_04982527.1|  hypothetical transcriptional reg...   418    4e-115
gi|254773086|ref|ZP_05214602.1|  hypothetical protein MaviaA2_001...   416    2e-114
gi|240172397|ref|ZP_04751056.1|  transcriptional regulatory prote...   412    3e-113
gi|118615955|ref|YP_904287.1|  transcriptional regulatory protein...   402    3e-110
gi|333988679|ref|YP_004521293.1|  transcriptional regulator [Myco...   324    9e-87 
gi|8920259|emb|CAB96432.1|  hypothetical protein [Mycobacterium a...   251    5e-65 
gi|256389948|ref|YP_003111512.1|  XRE family transcriptional regu...  55.8    6e-06 
gi|295694886|ref|YP_003588124.1|  XRE family transcriptional regu...  53.5    3e-05 
gi|83590661|ref|YP_430670.1|  XRE family transcriptional regulato...  53.5    3e-05 
gi|218289581|ref|ZP_03493801.1|  transcriptional regulator, XRE f...  52.4    6e-05 
gi|339008428|ref|ZP_08641001.1|  putative DNA-binding protein [Br...  52.4    7e-05 
gi|229169229|ref|ZP_04296943.1|  Transcriptional regulator, Xre [...  52.4    7e-05 
gi|157145722|ref|YP_001453041.1|  hypothetical protein CKO_01472 ...  52.0    9e-05 
gi|339289444|gb|AEJ43554.1|  transcriptional regulator, XRE famil...  51.6    1e-04 
gi|228960769|ref|ZP_04122407.1|  Transcriptional regulator, Xre [...  51.6    1e-04 
gi|30022584|ref|NP_834215.1|  transcriptional regulator [Bacillus...  51.6    1e-04 
gi|296504980|ref|YP_003666680.1|  transcriptional regulator [Baci...  51.2    2e-04 
gi|229019722|ref|ZP_04176528.1|  Transcriptional regulator, Xre [...  50.4    2e-04 
gi|163942236|ref|YP_001647120.1|  XRE family transcriptional regu...  50.4    2e-04 
gi|75764075|ref|ZP_00743675.1|  Transcriptional regulator, Xre fa...  50.4    2e-04 
gi|228993234|ref|ZP_04153155.1|  Transcriptional regulator, Xre [...  50.4    2e-04 
gi|228999282|ref|ZP_04158862.1|  Transcriptional regulator, Xre [...  50.4    2e-04 
gi|229098961|ref|ZP_04229896.1|  Transcriptional regulator, Xre [...  50.4    2e-04 
gi|229163492|ref|ZP_04291443.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|196034409|ref|ZP_03101818.1|  DNA-binding protein [Bacillus ce...  50.4    3e-04 
gi|228917142|ref|ZP_04080700.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|228910327|ref|ZP_04074143.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|73538955|ref|YP_299322.1|  helix-hairpin-helix DNA-binding mot...  50.4    3e-04 
gi|229062186|ref|ZP_04199510.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|229175212|ref|ZP_04302728.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|218899660|ref|YP_002448071.1|  DNA-binding protein [Bacillus c...  50.4    3e-04 
gi|30264572|ref|NP_846949.1|  DNA-binding protein [Bacillus anthr...  50.4    3e-04 
gi|228954773|ref|ZP_04116794.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|222097971|ref|YP_002532028.1|  DNA-binding protein [Bacillus c...  50.4    3e-04 
gi|206969718|ref|ZP_03230672.1|  DNA-binding protein [Bacillus ce...  50.4    3e-04 
gi|42783677|ref|NP_980924.1|  DNA-binding protein [Bacillus cereu...  50.4    3e-04 
gi|49478671|ref|YP_038556.1|  DNA-binding protein [Bacillus thuri...  50.4    3e-04 
gi|229117990|ref|ZP_04247350.1|  Transcriptional regulator, Xre [...  50.4    3e-04 
gi|218234511|ref|YP_002369300.1|  DNA-binding protein [Bacillus c...  50.4    3e-04 


>gi|15607165|ref|NP_214537.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15839397|ref|NP_334434.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31791200|ref|NP_853693.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 73 more sequence titles
 
gi|121635933|ref|YP_976156.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|148659783|ref|YP_001281306.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148821214|ref|YP_001285968.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167968155|ref|ZP_02550432.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis H37Ra]
 gi|224988406|ref|YP_002643073.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|253796938|ref|YP_003029939.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254233427|ref|ZP_04926753.1| hypothetical protein TBCG_00023 [Mycobacterium tuberculosis C]
 gi|254548955|ref|ZP_05139402.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|289441390|ref|ZP_06431134.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289552273|ref|ZP_06441483.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289567908|ref|ZP_06448135.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289572599|ref|ZP_06452826.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289747793|ref|ZP_06507171.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis 02_1987]
 gi|289748486|ref|ZP_06507864.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289756082|ref|ZP_06515460.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
EAS054]
 gi|289760120|ref|ZP_06519498.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
 gi|294995636|ref|ZP_06801327.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
210]
 gi|297632494|ref|ZP_06950274.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729465|ref|ZP_06958583.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
KZN R506]
 gi|298527421|ref|ZP_07014830.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306778315|ref|ZP_07416652.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306778844|ref|ZP_07417181.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306782634|ref|ZP_07420956.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306787000|ref|ZP_07425322.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306791558|ref|ZP_07429860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306795621|ref|ZP_07433923.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306801597|ref|ZP_07438265.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306805804|ref|ZP_07442472.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306970202|ref|ZP_07482863.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306974435|ref|ZP_07487096.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307082143|ref|ZP_07491313.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307082483|ref|ZP_07491596.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313656794|ref|ZP_07813674.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630106|ref|YP_004721748.1| transcriptional regulator [Mycobacterium africanum GM041182]
 gi|54039886|sp|P67705.1|Y023_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator 
Mb0023
 gi|54042795|sp|P67704.1|Y023_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator 
Rv0023/MT0026
 gi|1552578|emb|CAB02443.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|13879067|gb|AAK44248.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31616785|emb|CAD92885.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis 
AF2122/97]
 gi|121491580|emb|CAL70037.1| Possible transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|124603220|gb|EAY61495.1| hypothetical protein TBCG_00023 [Mycobacterium tuberculosis C]
 gi|148503935|gb|ABQ71744.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148719741|gb|ABR04366.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis F11]
 gi|224771519|dbj|BAH24325.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|253318441|gb|ACT23044.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289414309|gb|EFD11549.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289436905|gb|EFD19398.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289537030|gb|EFD41608.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289541661|gb|EFD45310.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289688321|gb|EFD55809.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis 02_1987]
 gi|289689073|gb|EFD56502.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289696669|gb|EFD64098.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
EAS054]
 gi|289715684|gb|EFD79696.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
 gi|298497215|gb|EFI32509.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213460|gb|EFO72859.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308328177|gb|EFP17028.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308332482|gb|EFP21333.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308336294|gb|EFP25145.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339898|gb|EFP28749.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308343913|gb|EFP32764.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308347697|gb|EFP36548.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308351614|gb|EFP40465.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308352321|gb|EFP41172.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308356221|gb|EFP45072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308360211|gb|EFP49062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308367773|gb|EFP56624.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323717362|gb|EGB26567.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326905784|gb|EGE52717.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328456729|gb|AEB02152.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|339296750|gb|AEJ48860.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
CCDC5180]
 gi|339329462|emb|CCC25097.1| putative transcriptional regulatory protein [Mycobacterium africanum 
GM041182]
 gi|341599949|emb|CCC62616.1| possible transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Moreau RDJ]
 gi|344217841|gb|AEM98471.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
CTRI-2]
Length=256

 Score =  508 bits (1309),  Expect = 3e-142, Method: Compositional matrix adjust.
 Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK
Sbjct  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA
Sbjct  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240

Query  241  FVDAIEASHDADEGQQ  256
            FVDAIEASHDADEGQQ
Sbjct  241  FVDAIEASHDADEGQQ  256


>gi|340625056|ref|YP_004743508.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340003246|emb|CCC42363.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
Length=256

 Score =  506 bits (1304),  Expect = 9e-142, Method: Compositional matrix adjust.
 Identities = 254/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK
Sbjct  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGAD+MWDIRNRGVIPAGALPRVRA
Sbjct  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADDMWDIRNRGVIPAGALPRVRA  240

Query  241  FVDAIEASHDADEGQQ  256
            FVDAIEASHDADEGQQ
Sbjct  241  FVDAIEASHDADEGQQ  256


>gi|289445548|ref|ZP_06435292.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289418506|gb|EFD15707.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
Length=256

 Score =  506 bits (1304),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 254/256 (99%), Positives = 255/256 (99%), Gaps = 0/256 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLD IK
Sbjct  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDVIK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA
Sbjct  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240

Query  241  FVDAIEASHDADEGQQ  256
            FVDAIEASHDADEGQQ
Sbjct  241  FVDAIEASHDADEGQQ  256


>gi|339293101|gb|AEJ45212.1| transcriptional regulator [Mycobacterium tuberculosis CCDC5079]
Length=224

 Score =  452 bits (1162),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 224/224 (100%), Positives = 224/224 (100%), Gaps = 0/224 (0%)

Query  33   MGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVR  92
            MGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVR
Sbjct  1    MGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVR  60

Query  93   RAGAVVVDRHSDTDVLEGYAEAQLDAIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLA  152
            RAGAVVVDRHSDTDVLEGYAEAQLDAIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLA
Sbjct  61   RAGAVVVDRHSDTDVLEGYAEAQLDAIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLA  120

Query  153  ASSWRVAVNAGADSTGRLMEHLRALEATRGALLERMPTSLSARFDRACAQSSLPEAVVAA  212
            ASSWRVAVNAGADSTGRLMEHLRALEATRGALLERMPTSLSARFDRACAQSSLPEAVVAA
Sbjct  121  ASSWRVAVNAGADSTGRLMEHLRALEATRGALLERMPTSLSARFDRACAQSSLPEAVVAA  180

Query  213  LIGVGADEMWDIRNRGVIPAGALPRVRAFVDAIEASHDADEGQQ  256
            LIGVGADEMWDIRNRGVIPAGALPRVRAFVDAIEASHDADEGQQ
Sbjct  181  LIGVGADEMWDIRNRGVIPAGALPRVRAFVDAIEASHDADEGQQ  224


>gi|118463481|ref|YP_879341.1| hypothetical protein MAV_0041 [Mycobacterium avium 104]
 gi|118164768|gb|ABK65665.1| helix-turn-helix domain protein [Mycobacterium avium 104]
Length=262

 Score =  437 bits (1125),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 220/256 (86%), Positives = 233/256 (92%), Gaps = 1/256 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLSYLERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADP+AELARL+AAQP      RR G VVVDRHSDT+VLEGYAEAQLDA+K
Sbjct  61   PGTYSRLLVAADPEAELARLMAAQPVAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAE+LAASSWRVAVNAGADSTGRLMEHL+ALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAVNAGADSTGRLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALL+RMPTSLSARFDRACAQSSLPE ++AAL+GV  DEMWDIRNRGVI   ALPRVRA
Sbjct  181  RVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRA  240

Query  241  FVDAIEASHDADEGQQ  256
            F DA+E S   DE  Q
Sbjct  241  FTDAVE-SASRDEASQ  255


>gi|342860249|ref|ZP_08716901.1| transcriptional regulatory protein [Mycobacterium colombiense 
CECT 3035]
 gi|342132627|gb|EGT85856.1| transcriptional regulatory protein [Mycobacterium colombiense 
CECT 3035]
Length=261

 Score =  436 bits (1121),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 219/251 (88%), Positives = 235/251 (94%), Gaps = 0/251 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            ++RESAGAAIRALRESRDWSLADLAAATGVS MGLS+LERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MTRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARL+AA P  P   RR+G VVVDRHSDT+VLEGYAEAQLDA+K
Sbjct  61   PGTYSRLLVAADPDAELARLMAAPPPAPMPTRRSGPVVVDRHSDTEVLEGYAEAQLDALK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHL+ALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALLERMPTSLSARFDRACA+SSLPE ++AAL+GV  DEMWDIRNRGVI  GALPRVRA
Sbjct  181  RAALLERMPTSLSARFDRACARSSLPETIIAALVGVDVDEMWDIRNRGVIAPGALPRVRA  240

Query  241  FVDAIEASHDA  251
            F DA+E+ H+A
Sbjct  241  FTDAVESGHNA  251


>gi|41406133|ref|NP_958969.1| hypothetical protein MAP0035 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394481|gb|AAS02352.1| hypothetical protein MAP_0035 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=262

 Score =  435 bits (1119),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 215/248 (87%), Positives = 231/248 (94%), Gaps = 0/248 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLSYLERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADP+AELARL+AAQP+     RR G VVVDRHSDT+VLEGYAEAQLDA+K
Sbjct  61   PGTYSRLLVAADPEAELARLMAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            S IDRLPATTSNEYETYILSVIAQCVKAE+LAASSWRVAVNAGADSTGRLMEHL+ALEAT
Sbjct  121  SAIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAVNAGADSTGRLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALL+RMPTSLSARFDRACAQSSLPE ++AAL+GV  DEMWDIRNRGVI   ALPRVRA
Sbjct  181  RVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRA  240

Query  241  FVDAIEAS  248
            F DA+E++
Sbjct  241  FTDAVESA  248


>gi|336459450|gb|EGO38392.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=262

 Score =  433 bits (1114),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 215/248 (87%), Positives = 231/248 (94%), Gaps = 0/248 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLSYLERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADP+AELARL+AAQP+     RR G VVVDRHSDT+VLEGYAEAQLDA+K
Sbjct  61   PGTYSRLLVAADPEAELARLMAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAE+LAASSWRVAVNAGADSTGRLMEHL+ALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAVNAGADSTGRLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALL+RMPTSLSARFDRACAQSSLPE ++AAL+GV  DEMWDIR RGVI   ALPRVRA
Sbjct  181  RVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRIRGVISPSALPRVRA  240

Query  241  FVDAIEAS  248
            F DA+E++
Sbjct  241  FTDAVESA  248


>gi|254819085|ref|ZP_05224086.1| helix-turn-helix domain-containing protein [Mycobacterium intracellulare 
ATCC 13950]
Length=263

 Score =  430 bits (1105),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 220/263 (84%), Positives = 235/263 (90%), Gaps = 7/263 (2%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLS+LERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARL+AAQ S     RR G VVVDRHSDT+VLEGYAEAQLDA+K
Sbjct  61   PGTYSRLLVAADPDAELARLMAAQASAAMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAV+AGADSTGRLMEHL+ALEAT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVSAGADSTGRLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALL+RMP SLSARFDRACAQSSLPE ++AAL+GV  DE+WDIRNRGVI  GALPRVRA
Sbjct  181  RTALLKRMPGSLSARFDRACAQSSLPETIIAALVGVDVDEIWDIRNRGVISPGALPRVRA  240

Query  241  FVDAIEA-------SHDADEGQQ  256
            F +A+E        SHD  EG Q
Sbjct  241  FTEAVETTGQEQQESHDGAEGAQ  263


>gi|183980077|ref|YP_001848368.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183173403|gb|ACC38513.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=263

 Score =  427 bits (1098),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 213/255 (84%), Positives = 234/255 (92%), Gaps = 1/255 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRES DWSLADLAAATGVS MGLSYLERGARKPHK TVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESHDWSLADLAAATGVSIMGLSYLERGARKPHKGTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADP+AELARL+AA+P+   + RR G VVVDRHSDTDVLEGYAEAQLDA++
Sbjct  61   PGTYSRLLVAADPEAELARLLAARPTETASPRRPGVVVVDRHSDTDVLEGYAEAQLDALR  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPA+TSNEYETYILSV+AQCVKAEMLAASSWRVAVNAG++S+ RLMEHL+ALEAT
Sbjct  121  SVIDRLPASTSNEYETYILSVVAQCVKAEMLAASSWRVAVNAGSESSARLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALLERMP SLSARFDRACAQS LP+AV+AALIGV +DE+WDIRNRGVIP GALPR+RA
Sbjct  181  RTALLERMPASLSARFDRACAQSQLPDAVIAALIGVDSDELWDIRNRGVIPPGALPRIRA  240

Query  241  FVD-AIEASHDADEG  254
            FVD + E+S   D G
Sbjct  241  FVDGSTESSQQQDPG  255


>gi|296167102|ref|ZP_06849512.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897544|gb|EFG77140.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=256

 Score =  425 bits (1093),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 215/254 (85%), Positives = 230/254 (91%), Gaps = 0/254 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLS+LERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSFLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARL+AAQP      +R G VVVDRHSDT+VLEGYAEAQL+A+K
Sbjct  61   PGTYSRLLVAADPDAELARLMAAQPPAAVPAKRTGPVVVDRHSDTEVLEGYAEAQLEALK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAA SWRVAVNAGADST RLMEHLRALE T
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAAGSWRVAVNAGADSTDRLMEHLRALEDT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALL+RMPTSLSARFDRACAQSSLPE ++AAL+GV   E+WDIRNRGVIP GALPRVRA
Sbjct  181  RTALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVAEIWDIRNRGVIPPGALPRVRA  240

Query  241  FVDAIEASHDADEG  254
            F DA+E+     EG
Sbjct  241  FTDAVESGSQPSEG  254


>gi|254366483|ref|ZP_04982527.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|134151995|gb|EBA44040.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
Length=252

 Score =  418 bits (1074),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 212/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK
Sbjct  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRAL+AT
Sbjct  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALKAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALI  214
            RGALLERMPTSLSARFDRACAQSSLPEAVVAALI
Sbjct  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALI  214


>gi|254773086|ref|ZP_05214602.1| hypothetical protein MaviaA2_00171 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=250

 Score =  416 bits (1069),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 203/236 (87%), Positives = 219/236 (93%), Gaps = 0/236 (0%)

Query  13   LRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLLVAAD  72
            +RESRDWSLADLAAATGVS MGLSYLERGARKPHKSTVQK+ENGLGLPPGTYSRLLVAAD
Sbjct  1    MRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLPPGTYSRLLVAAD  60

Query  73   PDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIKSVIDRLPATTSN  132
            P+AELARL+AAQP+     RR G VVVDRHSDT+VLEGYAEAQLDA+KSVIDRLPATTSN
Sbjct  61   PEAELARLMAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALKSVIDRLPATTSN  120

Query  133  EYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEATRGALLERMPTSL  192
            EYETYILSVIAQCVKAE+LAASSWRVAVNAG DSTGRLMEHL+ALEATR ALL+RMPTSL
Sbjct  121  EYETYILSVIAQCVKAELLAASSWRVAVNAGTDSTGRLMEHLQALEATRVALLKRMPTSL  180

Query  193  SARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRAFVDAIEAS  248
            SARFDRACAQSSLPE ++AAL+GV  DEMWDIRNRGVI   ALPRVRAF DA+E++
Sbjct  181  SARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRAFTDAVESA  236


>gi|240172397|ref|ZP_04751056.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 
12478]
Length=268

 Score =  412 bits (1058),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 208/243 (86%), Positives = 223/243 (92%), Gaps = 0/243 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLSYLERGARKPHK TVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKGTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADPDAELARL+AAQP    + RR G VVVDRHSDT+VLE YAEAQLD ++
Sbjct  61   PGTYSRLLVAADPDAELARLMAAQPPAAASPRRPGTVVVDRHSDTEVLEAYAEAQLDTLR  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPATTSNEYETYILSV++QCVKAEMLAASSWRVAVNAG++S+ RLM+HL++LEA 
Sbjct  121  SVIDRLPATTSNEYETYILSVVSQCVKAEMLAASSWRVAVNAGSESSDRLMQHLQSLEAM  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R  LLERM TSLSARFDRACAQS LPEAV+AALIGV  DEMWDIRNRGVIP GALPRVRA
Sbjct  181  RSTLLERMSTSLSARFDRACAQSPLPEAVIAALIGVSTDEMWDIRNRGVIPPGALPRVRA  240

Query  241  FVD  243
            FVD
Sbjct  241  FVD  243


>gi|118615955|ref|YP_904287.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118568065|gb|ABL02816.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=263

 Score =  402 bits (1032),  Expect = 3e-110, Method: Compositional matrix adjust.
 Identities = 211/263 (81%), Positives = 234/263 (89%), Gaps = 7/263 (2%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRES DWSLADLAAATGVS MGLSYLERGARKPHK TVQKVENGLGLP
Sbjct  1    MSRESAGAAIRALRESHDWSLADLAAATGVSIMGLSYLERGARKPHKGTVQKVENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSR+LVAADP+AELARL+AA+P+   + RR G VVVDRHSDTDVLEGYAEAQLDA++
Sbjct  61   PGTYSRMLVAADPEAELARLLAARPTETASPRRRGVVVVDRHSDTDVLEGYAEAQLDALR  120

Query  121  SVIDRLPATTSNEYETYILSVIAQCVKAEMLAASSWRVAVNAGADSTGRLMEHLRALEAT  180
            SVIDRLPA+TSNEY+TYILSV+AQCVKAEMLAASSWRVAVNAG++S+ RLMEHL+ALEAT
Sbjct  121  SVIDRLPASTSNEYDTYILSVVAQCVKAEMLAASSWRVAVNAGSESSARLMEHLQALEAT  180

Query  181  RGALLERMPTSLSARFDRACAQSSLPEAVVAALIGVGADEMWDIRNRGVIPAGALPRVRA  240
            R ALLERMP SLSARFDRACA S LP+AV+AALIGV +DE+WDIRNRGVIP GALPR+RA
Sbjct  181  RTALLERMPASLSARFDRACALSQLPDAVIAALIGVDSDELWDIRNRGVIPPGALPRIRA  240

Query  241  FVDAIEAS-------HDADEGQQ  256
            FVD    S       +D  EGQ+
Sbjct  241  FVDGSTESSEQQGPGYDDGEGQR  263


>gi|333988679|ref|YP_004521293.1| transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333484647|gb|AEF34039.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=227

 Score =  324 bits (830),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 167/223 (75%), Positives = 187/223 (84%), Gaps = 3/223 (1%)

Query  33   MGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLLVAADPDAELARLIAAQPSNPTAVR  92
            MGLSYLERGARKPHK TVQKVENGLGLPPGTYSRLLVA D DAELA+L+A   ++P   R
Sbjct  1    MGLSYLERGARKPHKGTVQKVENGLGLPPGTYSRLLVADDADAELAQLLAVPRTSPA--R  58

Query  93   RAGAVVVDRHSDTDVLEGYAEAQLDAIKSVIDRLPATTSNEYETYILSVIAQCVKAEMLA  152
             AGAVVVDRHSDT+VLEGYAEAQL+A++SVI RLP+  S+EYETYILSVI QCV AEMLA
Sbjct  59   PAGAVVVDRHSDTEVLEGYAEAQLEALRSVIARLPSEASDEYETYILSVITQCVTAEMLA  118

Query  153  ASSWRVAVNAGADSTGRLMEHLRALEATRGALLERMPTSLSARFDRACAQSSLPEAVVAA  212
            ASSWRVAVNAGA+    LM HL++LEA R  LL+RMP+SL ARFD ACA+SSLPE V+AA
Sbjct  119  ASSWRVAVNAGAEHAANLMAHLQSLEAIRSDLLQRMPSSLPARFDDACARSSLPEPVIAA  178

Query  213  LIGVGADEMWDIRNRGVIPAGALPRVRAFVD-AIEASHDADEG  254
            L+GV A+EMWDIRNRGVIP GAL RVRAF D A +    ADEG
Sbjct  179  LLGVSAEEMWDIRNRGVIPPGALARVRAFADGAADTPERADEG  221


>gi|8920259|emb|CAB96432.1| hypothetical protein [Mycobacterium avium subsp. paratuberculosis]
Length=146

 Score =  251 bits (642),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 125/141 (89%), Positives = 132/141 (94%), Gaps = 0/141 (0%)

Query  1    VSRESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            +SRESAGAAIRALRESRDWSLADLAAATGVS MGLSYLERGARKPHKSTVQK+ENGLGLP
Sbjct  1    MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLP  60

Query  61   PGTYSRLLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRHSDTDVLEGYAEAQLDAIK  120
            PGTYSRLLVAADP+AELARL+AAQP+     RR G VVVDRHSDT+VLEGYAEAQLDA+K
Sbjct  61   PGTYSRLLVAADPEAELARLMAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK  120

Query  121  SVIDRLPATTSNEYETYILSV  141
            S IDRLPATTSNEYETYILSV
Sbjct  121  SAIDRLPATTSNEYETYILSV  141


>gi|256389948|ref|YP_003111512.1| XRE family transcriptional regulator [Catenulispora acidiphila 
DSM 44928]
 gi|256356174|gb|ACU69671.1| transcriptional regulator, XRE family [Catenulispora acidiphila 
DSM 44928]
Length=288

 Score = 55.8 bits (133),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 39/96 (41%), Positives = 56/96 (59%), Gaps = 1/96 (1%)

Query  7    GAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGTYSR  66
            GA +RA R +R+ S  DL++A+GVST  LS++E G  KP +  V ++ + L +P    ++
Sbjct  34   GAMLRAWRRTRNVSQLDLSSASGVSTRHLSFMETGRAKPSREMVLRLADELEVPLRERNK  93

Query  67   LLVAADPDAELARLIAAQPSNPTAVRRAGAVVVDRH  102
            LLVAA    E      A P   +AVRRA  VV+  H
Sbjct  94   LLVAAGYAPEFKARPLASPEM-SAVRRAIDVVLTGH  128


>gi|295694886|ref|YP_003588124.1| XRE family transcriptional regulator [Bacillus tusciae DSM 2912]
 gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
Length=195

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 38/68 (56%), Gaps = 5/68 (7%)

Query  7   GAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGTYSR  66
           G  +R+LR  R W+L  +AA TGVS   L  +ERG   P   T+ K+  GLG+P  T+ R
Sbjct  12  GQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIATGLGVPFSTFLR  71

Query  67  LLVAADPD  74
                DPD
Sbjct  72  -----DPD  74


>gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica 
ATCC 39073]
 gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica 
ATCC 39073]
Length=252

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 28/55 (51%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  6   AGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            G  IR LRE R +SL DLA   GVS   LS +ERGA++P   T+ KV   L LP
Sbjct  4   CGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLP  58


 Score = 35.8 bits (81),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 22/54 (41%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  7    GAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLP  60
            G  IR LRE    +L  LA A G+S   LS +ERG   P   T++K+   L +P
Sbjct  74   GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVP  127


>gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius 
LAA1]
 gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius 
subsp. acidocaldarius DSM 446]
 gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius 
LAA1]
 gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius 
subsp. acidocaldarius DSM 446]
Length=145

 Score = 52.4 bits (124),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 43/72 (60%), Gaps = 6/72 (8%)

Query  3   RESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPG  62
           ++S GA +RA+R+SR WS  +LA   GVST  +S +ER  R+P     +++ + LG+P  
Sbjct  2   KDSFGARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVP--  59

Query  63  TYSRLLVAADPD  74
               L V  DP+
Sbjct  60  ----LQVLCDPE  67


>gi|339008428|ref|ZP_08641001.1| putative DNA-binding protein [Brevibacillus laterosporus LMG 
15441]
 gi|338774228|gb|EGP33758.1| putative DNA-binding protein [Brevibacillus laterosporus LMG 
15441]
Length=188

 Score = 52.4 bits (124),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 43/81 (54%), Gaps = 6/81 (7%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R LR+ ++ SL +LAA TGVS + L  +ERG   P    + K+ NGL +P   
Sbjct  13  QFVGTTLRELRKEQNLSLEELAAKTGVSKLTLGNIERGETNPTLGMLWKISNGLSVP---  69

Query  64  YSRLLVAADPDAELARLIAAQ  84
              L+    P+ E+  L A Q
Sbjct  70  ---LMTLLKPENEINILRAGQ  87


>gi|229169229|ref|ZP_04296943.1| Transcriptional regulator, Xre [Bacillus cereus AH621]
 gi|228614295|gb|EEK71406.1| Transcriptional regulator, Xre [Bacillus cereus AH621]
Length=190

 Score = 52.4 bits (124),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL DLA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|157145722|ref|YP_001453041.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895]
 gi|157082927|gb|ABV12605.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895]
Length=178

 Score = 52.0 bits (123),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 28/67 (42%), Positives = 40/67 (60%), Gaps = 5/67 (7%)

Query  10  IRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLLV  69
           ++ALR+ R+WSL+ LA ATGVS   L  +ER    P  ST+ K+  GL +P  T+     
Sbjct  12  LKALRQQREWSLSRLAEATGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSTF-----  66

Query  70  AADPDAE  76
            + P+AE
Sbjct  67  ISPPEAE  73


>gi|339289444|gb|AEJ43554.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius 
subsp. acidocaldarius Tc-4-1]
Length=145

 Score = 51.6 bits (122),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 42/72 (59%), Gaps = 6/72 (8%)

Query  3   RESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPG  62
           ++S GA +RA+R SR WS  +LA   GVST  +S +ER  R+P     +++ + LG+P  
Sbjct  2   KDSFGARVRAIRHSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVP--  59

Query  63  TYSRLLVAADPD  74
               L V  DP+
Sbjct  60  ----LHVLCDPE  67


>gi|228960769|ref|ZP_04122407.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
pakistani str. T13001]
 gi|229048209|ref|ZP_04193778.1| Transcriptional regulator, Xre [Bacillus cereus AH676]
 gi|229129788|ref|ZP_04258755.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|229147062|ref|ZP_04275422.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228636450|gb|EEK92920.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228653704|gb|EEL09575.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|228723196|gb|EEL74572.1| Transcriptional regulator, Xre [Bacillus cereus AH676]
 gi|228798904|gb|EEM45880.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
pakistani str. T13001]
Length=194

 Score = 51.6 bits (122),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 40/72 (56%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  18  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  74

Query  64  YSRLLVAADPDA  75
            SRL+VA +P A
Sbjct  75  LSRLMVAGEPVA  86


>gi|30022584|ref|NP_834215.1| transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|29898142|gb|AAP11416.1| Transcriptional regulator [Bacillus cereus ATCC 14579]
Length=190

 Score = 51.6 bits (122),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 40/72 (56%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+VA +P A
Sbjct  71  LSRLMVAGEPVA  82


>gi|296504980|ref|YP_003666680.1| transcriptional regulator [Bacillus thuringiensis BMB171]
 gi|296326032|gb|ADH08960.1| transcriptional regulator [Bacillus thuringiensis BMB171]
Length=190

 Score = 51.2 bits (121),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 40/72 (56%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGEANPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+VA +P A
Sbjct  71  LSRLMVAGEPVA  82


>gi|229019722|ref|ZP_04176528.1| Transcriptional regulator, Xre [Bacillus cereus AH1273]
 gi|229025948|ref|ZP_04182338.1| Transcriptional regulator, Xre [Bacillus cereus AH1272]
 gi|228735349|gb|EEL85954.1| Transcriptional regulator, Xre [Bacillus cereus AH1272]
 gi|228741567|gb|EEL91761.1| Transcriptional regulator, Xre [Bacillus cereus AH1273]
Length=190

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|163942236|ref|YP_001647120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis 
KBAB4]
 gi|229013704|ref|ZP_04170833.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048]
 gi|229135335|ref|ZP_04264127.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196]
 gi|163864433|gb|ABY45492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis 
KBAB4]
 gi|228648124|gb|EEL04167.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196]
 gi|228747626|gb|EEL97500.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048]
Length=190

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|75764075|ref|ZP_00743675.1| Transcriptional regulator, Xre family [Bacillus thuringiensis 
serovar israelensis ATCC 35646]
 gi|228903022|ref|ZP_04067161.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
 gi|74488436|gb|EAO52052.1| Transcriptional regulator, Xre family [Bacillus thuringiensis 
serovar israelensis ATCC 35646]
 gi|228856615|gb|EEN01136.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
Length=194

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  18  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  74

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  75  LSRLMVVGEPVA  86


>gi|228993234|ref|ZP_04153155.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442]
 gi|228766560|gb|EEM15202.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442]
Length=190

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|228999282|ref|ZP_04158862.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17]
 gi|229006837|ref|ZP_04164470.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4]
 gi|228754459|gb|EEM03871.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4]
 gi|228760479|gb|EEM09445.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17]
Length=190

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|229098961|ref|ZP_04229896.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29]
 gi|229105128|ref|ZP_04235779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28]
 gi|228678309|gb|EEL32535.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28]
 gi|228684459|gb|EEL38402.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29]
Length=190

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|229163492|ref|ZP_04291443.1| Transcriptional regulator, Xre [Bacillus cereus R309803]
 gi|228620061|gb|EEK76936.1| Transcriptional regulator, Xre [Bacillus cereus R309803]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|196034409|ref|ZP_03101818.1| DNA-binding protein [Bacillus cereus W]
 gi|195992951|gb|EDX56910.1| DNA-binding protein [Bacillus cereus W]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|228917142|ref|ZP_04080700.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
pulsiensis BGSC 4CC1]
 gi|228842560|gb|EEM87650.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
pulsiensis BGSC 4CC1]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|228910327|ref|ZP_04074143.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200]
 gi|228849279|gb|EEM94117.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200]
Length=194

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  18  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  74

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  75  LSRLMVVGEPVA  86


>gi|73538955|ref|YP_299322.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia 
eutropha JMP134]
 gi|72122292|gb|AAZ64478.1| Helix-turn-helix motif protein [Ralstonia eutropha JMP134]
Length=188

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 41/77 (54%), Gaps = 3/77 (3%)

Query  9   AIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGTYSRLL  68
            +R  RESR+WSLADLA  +GVS   +S +ERG   P  + + K+    GLP    S LL
Sbjct  15  CVRVERESREWSLADLAERSGVSKAMISKIERGEASPTATVLGKLSGAFGLP---LSMLL  71

Query  69  VAADPDAELARLIAAQP  85
             A+   E     A QP
Sbjct  72  ARAEQAGERLSRAADQP  88


>gi|229062186|ref|ZP_04199510.1| Transcriptional regulator, Xre [Bacillus cereus AH603]
 gi|228717169|gb|EEL68845.1| Transcriptional regulator, Xre [Bacillus cereus AH603]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|229175212|ref|ZP_04302728.1| Transcriptional regulator, Xre [Bacillus cereus MM3]
 gi|228608348|gb|EEK65654.1| Transcriptional regulator, Xre [Bacillus cereus MM3]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|218899660|ref|YP_002448071.1| DNA-binding protein [Bacillus cereus G9842]
 gi|218541106|gb|ACK93500.1| DNA-binding protein [Bacillus cereus G9842]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|30264572|ref|NP_846949.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47530039|ref|YP_021388.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187395|ref|YP_030647.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 40 more sequence titles
 
gi|65321870|ref|ZP_00394829.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis 
str. A2012]
 gi|165871491|ref|ZP_02216138.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167635596|ref|ZP_02393908.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641686|ref|ZP_02399931.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170688288|ref|ZP_02879498.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170708374|ref|ZP_02898818.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177653168|ref|ZP_02935455.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190567021|ref|ZP_03019937.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196039163|ref|ZP_03106469.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218905729|ref|YP_002453563.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227817285|ref|YP_002817294.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228929551|ref|ZP_04092570.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
pondicheriensis BGSC 4BA1]
 gi|228948227|ref|ZP_04110511.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
monterrey BGSC 4AJ1]
 gi|229124068|ref|ZP_04253260.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201]
 gi|229600477|ref|YP_002868785.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254687007|ref|ZP_05150865.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724570|ref|ZP_05186353.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254736607|ref|ZP_05194313.1| DNA-binding protein [Bacillus anthracis str. Western North America 
USA6153]
 gi|254741645|ref|ZP_05199332.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254754757|ref|ZP_05206792.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254757589|ref|ZP_05209616.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|301056014|ref|YP_003794225.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI]
 gi|30259230|gb|AAP28435.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47505187|gb|AAT33863.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181322|gb|AAT56698.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164712788|gb|EDR18318.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510393|gb|EDR85794.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529016|gb|EDR91771.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170126749|gb|EDS95632.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170667794|gb|EDT18547.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172081692|gb|EDT66763.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190562012|gb|EDV15981.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196029790|gb|EDX68391.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218537131|gb|ACK89529.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227005980|gb|ACP15723.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228659370|gb|EEL15018.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201]
 gi|228811585|gb|EEM57922.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
monterrey BGSC 4AJ1]
 gi|228830130|gb|EEM75748.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
pondicheriensis BGSC 4BA1]
 gi|229264885|gb|ACQ46522.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|300378183|gb|ADK07087.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|228954773|ref|ZP_04116794.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
kurstaki str. T03a001]
 gi|229072008|ref|ZP_04205218.1| Transcriptional regulator, Xre [Bacillus cereus F65185]
 gi|229081756|ref|ZP_04214249.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2]
 11 more sequence titles
 
gi|229111966|ref|ZP_04241510.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15]
 gi|229152697|ref|ZP_04280884.1| Transcriptional regulator, Xre [Bacillus cereus m1550]
 gi|229180769|ref|ZP_04308107.1| Transcriptional regulator, Xre [Bacillus cereus 172560W]
 gi|229192702|ref|ZP_04319661.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876]
 gi|228590792|gb|EEK48652.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876]
 gi|228602747|gb|EEK60230.1| Transcriptional regulator, Xre [Bacillus cereus 172560W]
 gi|228630760|gb|EEK87402.1| Transcriptional regulator, Xre [Bacillus cereus m1550]
 gi|228671530|gb|EEL26830.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15]
 gi|228701601|gb|EEL54094.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2]
 gi|228711167|gb|EEL63132.1| Transcriptional regulator, Xre [Bacillus cereus F65185]
 gi|228804893|gb|EEM51491.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
kurstaki str. T03a001]
Length=194

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  18  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  74

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  75  LSRLMVVGEPVA  86


>gi|222097971|ref|YP_002532028.1| DNA-binding protein [Bacillus cereus Q1]
 gi|221242029|gb|ACM14739.1| DNA-binding protein [Bacillus cereus Q1]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|206969718|ref|ZP_03230672.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|206735406|gb|EDZ52574.1| DNA-binding protein [Bacillus cereus AH1134]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|42783677|ref|NP_980924.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206975999|ref|ZP_03236909.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217961988|ref|YP_002340558.1| DNA-binding protein [Bacillus cereus AH187]
 12 more sequence titles
 
gi|228987754|ref|ZP_04147865.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
tochigiensis BGSC 4Y1]
 gi|229141235|ref|ZP_04269774.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26]
 gi|229158112|ref|ZP_04286181.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342]
 gi|229198653|ref|ZP_04325354.1| Transcriptional regulator, Xre [Bacillus cereus m1293]
 gi|42739606|gb|AAS43532.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206745751|gb|EDZ57148.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217066549|gb|ACJ80799.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228584812|gb|EEK42929.1| Transcriptional regulator, Xre [Bacillus cereus m1293]
 gi|228625341|gb|EEK82099.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342]
 gi|228642276|gb|EEK98568.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26]
 gi|228772028|gb|EEM20483.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
tochigiensis BGSC 4Y1]
 gi|324328397|gb|ADY23657.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus 
YBT-020]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|49478671|ref|YP_038556.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian 
str. 97-27]
 gi|52140999|ref|YP_085831.1| DNA-binding protein [Bacillus cereus E33L]
 gi|229093600|ref|ZP_04224701.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42]
 gi|49330227|gb|AAT60873.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian 
str. 97-27]
 gi|51974468|gb|AAU16018.1| DNA-binding protein [Bacillus cereus E33L]
 gi|228689809|gb|EEL43615.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|229117990|ref|ZP_04247350.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3]
 gi|228665439|gb|EEL20921.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82


>gi|218234511|ref|YP_002369300.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228923247|ref|ZP_04086537.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
huazhongensis BGSC 4BD1]
 gi|218162468|gb|ACK62460.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228836453|gb|EEM81804.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar 
huazhongensis BGSC 4BD1]
Length=190

 Score = 50.4 bits (119),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 3/72 (4%)

Query  4   ESAGAAIRALRESRDWSLADLAAATGVSTMGLSYLERGARKPHKSTVQKVENGLGLPPGT  63
           +  G  +R +R  +  SL +LA  TGVS + L  +ERG   P  + + K+  GL +P   
Sbjct  14  QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIP---  70

Query  64  YSRLLVAADPDA  75
            SRL+V  +P A
Sbjct  71  LSRLMVVGEPVA  82



Lambda     K      H
   0.315    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 377837056800




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40