BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0025

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607167|ref|NP_214539.1|  hypothetical protein Rv0025 [Mycoba...   228    2e-58
gi|340625058|ref|YP_004743510.1|  hypothetical protein MCAN_00241...   226    1e-57
gi|289764140|ref|ZP_06523518.1|  conserved hypothetical protein [...   225    2e-57
gi|31791202|ref|NP_853695.1|  hypothetical protein Mb0026 [Mycoba...   224    3e-57
gi|289748489|ref|ZP_06507867.1|  conserved hypothetical protein [...   197    4e-49
gi|183980079|ref|YP_001848370.1|  hypothetical protein MMAR_0044 ...   156    1e-36
gi|118615957|ref|YP_904289.1|  hypothetical protein MUL_0043 [Myc...   155    2e-36
gi|15839399|ref|NP_334436.1|  hypothetical protein MT0028 [Mycoba...   153    6e-36
gi|240172399|ref|ZP_04751058.1|  hypothetical protein MkanA1_2399...   153    9e-36
gi|254819083|ref|ZP_05224084.1|  hypothetical protein MintA_04108...   136    9e-31
gi|254773088|ref|ZP_05214604.1|  hypothetical protein MaviaA2_001...   132    2e-29
gi|118465006|ref|YP_879343.1|  hypothetical protein MAV_0043 [Myc...   131    4e-29
gi|336459448|gb|EGO38390.1|  Biofilm regulator BssS [Mycobacteriu...   128    3e-28
gi|342860247|ref|ZP_08716899.1|  hypothetical protein MCOL_15260 ...   127    5e-28
gi|41406135|ref|NP_958971.1|  hypothetical protein MAP0037 [Mycob...   125    2e-27
gi|296167100|ref|ZP_06849510.1|  conserved hypothetical protein [...   118    3e-25
gi|333990938|ref|YP_004523552.1|  hypothetical protein JDM601_229...  68.2    4e-10
gi|333989221|ref|YP_004521835.1|  hypothetical protein JDM601_058...  60.5    9e-08
gi|289442140|ref|ZP_06431884.1|  conserved hypothetical protein [...  59.3    2e-07
gi|289756827|ref|ZP_06516205.1|  conserved hypothetical protein [...  59.3    2e-07
gi|15607879|ref|NP_215253.1|  hypothetical protein Rv0739 [Mycoba...  59.3    2e-07
gi|289568686|ref|ZP_06448913.1|  conserved hypothetical protein [...  59.3    2e-07
gi|31791925|ref|NP_854418.1|  hypothetical protein Mb0760 [Mycoba...  58.9    2e-07
gi|148821944|ref|YP_001286698.1|  hypothetical protein TBFG_10753...  58.9    2e-07
gi|333992654|ref|YP_004525268.1|  hypothetical protein JDM601_401...  58.2    4e-07
gi|333988681|ref|YP_004521295.1|  hypothetical protein JDM601_004...  57.4    6e-07
gi|333988699|ref|YP_004521313.1|  hypothetical protein JDM601_005...  53.1    1e-05
gi|296165466|ref|ZP_06848001.1|  conserved hypothetical protein [...  48.5    3e-04
gi|340625059|ref|YP_004743511.1|  hypothetical protein MCAN_00251...  45.4    0.002
gi|254819082|ref|ZP_05224083.1|  hypothetical protein MintA_04103...  45.4    0.002
gi|296167099|ref|ZP_06849509.1|  conserved hypothetical protein [...  45.1    0.003
gi|254773089|ref|ZP_05214605.1|  hypothetical protein MaviaA2_001...  45.1    0.004
gi|118462713|ref|YP_879344.1|  hypothetical protein MAV_0044 [Myc...  45.1    0.004
gi|41406136|ref|NP_958972.1|  hypothetical protein MAP0038 [Mycob...  45.1    0.004
gi|183980080|ref|YP_001848371.1|  hypothetical protein MMAR_0045 ...  44.7    0.004
gi|289764141|ref|ZP_06523519.1|  conserved hypothetical protein [...  44.7    0.005
gi|15607168|ref|NP_214540.1|  hypothetical protein Rv0026 [Mycoba...  44.7    0.005
gi|254366485|ref|ZP_04982529.1|  conserved hypothetical protein [...  44.7    0.005
gi|15839400|ref|NP_334437.1|  hypothetical protein MT0029 [Mycoba...  44.7    0.005
gi|253796941|ref|YP_003029942.1|  hypothetical protein TBMG_00026...  44.7    0.005
gi|289445551|ref|ZP_06435295.1|  conserved hypothetical protein [...  44.7    0.005
gi|49146165|ref|YP_025603.1|  hypothetical protein MUP081c [Mycob...  44.7    0.005
gi|289441393|ref|ZP_06431137.1|  conserved hypothetical protein [...  44.3    0.005
gi|339630109|ref|YP_004721751.1|  hypothetical protein MAF_00260 ...  44.3    0.006
gi|169245942|gb|ACA50963.1|  conserved hypothetical protein [Myco...  44.3    0.006
gi|209418107|ref|YP_002274136.1|  hypothetical protein MULP_101 [...  44.3    0.007
gi|342860246|ref|ZP_08716898.1|  hypothetical protein MCOL_15255 ...  42.4    0.020
gi|31791203|ref|NP_853696.1|  hypothetical protein Mb0027 [Mycoba...  42.4    0.022
gi|240172400|ref|ZP_04751059.1|  hypothetical protein MkanA1_2399...  42.0    0.032
gi|118615958|ref|YP_904290.1|  hypothetical protein MUL_0044 [Myc...  39.7    0.14 


>gi|15607167|ref|NP_214539.1| hypothetical protein Rv0025 [Mycobacterium tuberculosis H37Rv]
 gi|148659785|ref|YP_001281308.1| hypothetical protein MRA_0028 [Mycobacterium tuberculosis H37Ra]
 gi|148821216|ref|YP_001285970.1| hypothetical protein TBFG_10025 [Mycobacterium tuberculosis F11]
 61 more sequence titles
 
gi|167968157|ref|ZP_02550434.1| hypothetical protein MtubH3_09022 [Mycobacterium tuberculosis 
H37Ra]
 gi|253796940|ref|YP_003029941.1| hypothetical protein TBMG_00025 [Mycobacterium tuberculosis KZN 
1435]
 gi|254548957|ref|ZP_05139404.1| hypothetical protein Mtube_00570 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289441392|ref|ZP_06431136.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289445550|ref|ZP_06435294.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289552275|ref|ZP_06441485.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289567910|ref|ZP_06448137.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572601|ref|ZP_06452828.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747795|ref|ZP_06507173.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289756084|ref|ZP_06515462.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289760122|ref|ZP_06519500.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294995638|ref|ZP_06801329.1| hypothetical protein Mtub2_14312 [Mycobacterium tuberculosis 
210]
 gi|297632496|ref|ZP_06950276.1| hypothetical protein MtubK4_00140 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729467|ref|ZP_06958585.1| hypothetical protein MtubKR_00150 [Mycobacterium tuberculosis 
KZN R506]
 gi|298527423|ref|ZP_07014832.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306778317|ref|ZP_07416654.1| hypothetical protein TMAG_00696 [Mycobacterium tuberculosis SUMu001]
 gi|306778846|ref|ZP_07417183.1| hypothetical protein TMBG_02490 [Mycobacterium tuberculosis SUMu002]
 gi|306782636|ref|ZP_07420958.1| hypothetical protein TMCG_03738 [Mycobacterium tuberculosis SUMu003]
 gi|306787002|ref|ZP_07425324.1| hypothetical protein TMDG_01909 [Mycobacterium tuberculosis SUMu004]
 gi|306791560|ref|ZP_07429862.1| hypothetical protein TMEG_00449 [Mycobacterium tuberculosis SUMu005]
 gi|306795623|ref|ZP_07433925.1| hypothetical protein TMFG_02188 [Mycobacterium tuberculosis SUMu006]
 gi|306801599|ref|ZP_07438267.1| hypothetical protein TMHG_03022 [Mycobacterium tuberculosis SUMu008]
 gi|306805806|ref|ZP_07442474.1| hypothetical protein TMGG_01496 [Mycobacterium tuberculosis SUMu007]
 gi|306970204|ref|ZP_07482865.1| hypothetical protein TMIG_00306 [Mycobacterium tuberculosis SUMu009]
 gi|306974437|ref|ZP_07487098.1| hypothetical protein TMJG_01206 [Mycobacterium tuberculosis SUMu010]
 gi|307082145|ref|ZP_07491315.1| hypothetical protein TMKG_01204 [Mycobacterium tuberculosis SUMu011]
 gi|307082485|ref|ZP_07491598.1| hypothetical protein TMLG_00757 [Mycobacterium tuberculosis SUMu012]
 gi|313656796|ref|ZP_07813676.1| hypothetical protein MtubKV_00150 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630108|ref|YP_004721750.1| hypothetical protein MAF_00250 [Mycobacterium africanum GM041182]
 gi|14195333|sp|P71595.1|Y025_MYCTU RecName: Full=Uncharacterized protein Rv0025/MT0028
 gi|1552580|emb|CAB02445.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148503937|gb|ABQ71746.1| hypothetical protein MRA_0028 [Mycobacterium tuberculosis H37Ra]
 gi|148719743|gb|ABR04368.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253318443|gb|ACT23046.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289414311|gb|EFD11551.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289418508|gb|EFD15709.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289436907|gb|EFD19400.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289537032|gb|EFD41610.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289541663|gb|EFD45312.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688323|gb|EFD55811.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289696671|gb|EFD64100.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289715686|gb|EFD79698.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497217|gb|EFI32511.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213462|gb|EFO72861.1| hypothetical protein TMAG_00696 [Mycobacterium tuberculosis SUMu001]
 gi|308328179|gb|EFP17030.1| hypothetical protein TMBG_02490 [Mycobacterium tuberculosis SUMu002]
 gi|308332484|gb|EFP21335.1| hypothetical protein TMCG_03738 [Mycobacterium tuberculosis SUMu003]
 gi|308336296|gb|EFP25147.1| hypothetical protein TMDG_01909 [Mycobacterium tuberculosis SUMu004]
 gi|308339900|gb|EFP28751.1| hypothetical protein TMEG_00449 [Mycobacterium tuberculosis SUMu005]
 gi|308343915|gb|EFP32766.1| hypothetical protein TMFG_02188 [Mycobacterium tuberculosis SUMu006]
 gi|308347699|gb|EFP36550.1| hypothetical protein TMGG_01496 [Mycobacterium tuberculosis SUMu007]
 gi|308351616|gb|EFP40467.1| hypothetical protein TMHG_03022 [Mycobacterium tuberculosis SUMu008]
 gi|308352323|gb|EFP41174.1| hypothetical protein TMIG_00306 [Mycobacterium tuberculosis SUMu009]
 gi|308356223|gb|EFP45074.1| hypothetical protein TMJG_01206 [Mycobacterium tuberculosis SUMu010]
 gi|308360213|gb|EFP49064.1| hypothetical protein TMKG_01204 [Mycobacterium tuberculosis SUMu011]
 gi|308367775|gb|EFP56626.1| hypothetical protein TMLG_00757 [Mycobacterium tuberculosis SUMu012]
 gi|326905786|gb|EGE52719.1| hypothetical protein TBPG_03751 [Mycobacterium tuberculosis W-148]
 gi|328456731|gb|AEB02154.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339293103|gb|AEJ45214.1| hypothetical protein CCDC5079_0024 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339296752|gb|AEJ48862.1| hypothetical protein CCDC5180_0025 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339329464|emb|CCC25099.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|344217843|gb|AEM98473.1| hypothetical protein MTCTRI2_0028 [Mycobacterium tuberculosis 
CTRI-2]
Length=120

 Score =  228 bits (582),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR
Sbjct  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR
Sbjct  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120


>gi|340625058|ref|YP_004743510.1| hypothetical protein MCAN_00241 [Mycobacterium canettii CIPT 
140010059]
 gi|340003248|emb|CCC42365.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=120

 Score =  226 bits (575),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            MSEQAGS VAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR
Sbjct  1    MSEQAGSLVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR
Sbjct  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120


>gi|289764140|ref|ZP_06523518.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289711646|gb|EFD75662.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=120

 Score =  225 bits (573),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR
Sbjct  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQ TEPAR
Sbjct  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQCTEPAR  120


>gi|31791202|ref|NP_853695.1| hypothetical protein Mb0026 [Mycobacterium bovis AF2122/97]
 gi|121635935|ref|YP_976158.1| hypothetical protein BCG_0056 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224988408|ref|YP_002643075.1| hypothetical protein JTY_0026 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31616787|emb|CAD92888.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491582|emb|CAL70040.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224771521|dbj|BAH24327.1| hypothetical protein JTY_0026 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341599951|emb|CCC62619.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=120

 Score =  224 bits (571),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR
Sbjct  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AVPDQDQLAVDT MGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR
Sbjct  61   AVPDQDQLAVDTLMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120


>gi|289748489|ref|ZP_06507867.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689076|gb|EFD56505.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=107

 Score =  197 bits (502),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR
Sbjct  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKS  105
            AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAK+
Sbjct  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKA  105


>gi|183980079|ref|YP_001848370.1| hypothetical protein MMAR_0044 [Mycobacterium marinum M]
 gi|183173405|gb|ACC38515.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=126

 Score =  156 bits (394),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 80/118 (68%), Positives = 92/118 (78%), Gaps = 0/118 (0%)

Query  2    SEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRA  61
            +EQAGS++A I+ RQA LARQHD + EADR LA+ L  AH  MR+SVRRLDAI AE+D A
Sbjct  8    AEQAGSALAAIRARQAELARQHDVLGEADRALAEALTRAHTVMRDSVRRLDAIGAEIDGA  67

Query  62   VPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPA  119
            V  QD LA+DTP+GAREFQ FL+AKQREI  +VA AHELDR KSAVL  LRA Y E A
Sbjct  68   VAGQDSLALDTPLGAREFQNFLLAKQREIATIVATAHELDRTKSAVLASLRAHYGESA  125


>gi|118615957|ref|YP_904289.1| hypothetical protein MUL_0043 [Mycobacterium ulcerans Agy99]
 gi|118568067|gb|ABL02818.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=126

 Score =  155 bits (392),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 79/116 (69%), Positives = 90/116 (78%), Gaps = 0/116 (0%)

Query  2    SEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRA  61
            SEQAGS++A I+ RQA LARQHD + EADR L + L  AH  MR+SVRRLDAI AE+D A
Sbjct  8    SEQAGSALAAIRARQAELARQHDVLGEADRALVEALTRAHTVMRDSVRRLDAIGAEIDGA  67

Query  62   VPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTE  117
            V  QD LA+DTP+GAREFQ FL+AKQREI  +VA AHELDR KSAVL  LRA Y E
Sbjct  68   VAGQDSLALDTPLGAREFQNFLLAKQREIATIVATAHELDRTKSAVLANLRAHYGE  123


>gi|15839399|ref|NP_334436.1| hypothetical protein MT0028 [Mycobacterium tuberculosis CDC1551]
 gi|254233429|ref|ZP_04926755.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366484|ref|ZP_04982528.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|13879069|gb|AAK44250.1| hypothetical protein MT0028 [Mycobacterium tuberculosis CDC1551]
 gi|124603222|gb|EAY61497.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151996|gb|EBA44041.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|323717364|gb|EGB26569.1| hypothetical protein TMMG_00444 [Mycobacterium tuberculosis CDC1551A]
Length=90

 Score =  153 bits (387),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
           MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR
Sbjct  1   MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60

Query  61  AVPDQDQLAVDTPMGAREFQ  80
           AVPDQDQLAVDTPMGAREFQ
Sbjct  61  AVPDQDQLAVDTPMGAREFQ  80


>gi|240172399|ref|ZP_04751058.1| hypothetical protein MkanA1_23993 [Mycobacterium kansasii ATCC 
12478]
Length=120

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/119 (69%), Positives = 93/119 (79%), Gaps = 0/119 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            MSEQAGSS   I  RQA+L  Q+ A+ EADR LA+ LASAHA MRES+RRLDAIAA+++R
Sbjct  1    MSEQAGSSPDAIAARQAVLGSQYQAITEADRVLAEALASAHATMRESIRRLDAIAADIER  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPA  119
            AV DQ +LAVDTP+GAREFQ FL+ KQREI  +VA A ELD  KSAVL RL AQY  PA
Sbjct  61   AVSDQAELAVDTPLGAREFQRFLLDKQREITTIVAGARELDHTKSAVLARLLAQYAGPA  119


>gi|254819083|ref|ZP_05224084.1| hypothetical protein MintA_04108 [Mycobacterium intracellulare 
ATCC 13950]
Length=120

 Score =  136 bits (343),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 74/116 (64%), Positives = 87/116 (75%), Gaps = 0/116 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            M EQ G S+  ++ R++ LA QH AV+EAD  L DVL +AH+A RESVRRLDAIA ++D 
Sbjct  1    MPEQPGHSLEAVEARRSTLASQHGAVSEADLVLTDVLNTAHSAARESVRRLDAIAEQIDH  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYT  116
            AV  Q  LAVDTPMGAREF  FL+ KQREI AVVA A EL +AK AVL+ LRAQYT
Sbjct  61   AVVQQANLAVDTPMGAREFHKFLLDKQREIAAVVAGARELAQAKRAVLENLRAQYT  116


>gi|254773088|ref|ZP_05214604.1| hypothetical protein MaviaA2_00181 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=120

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 73/120 (61%), Positives = 88/120 (74%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            M EQ G S+  ++ R++ LA QH A +EADR LA+VLASAHAA +ES RRLDAIA ++DR
Sbjct  1    MPEQPGFSLEAVEARRSALADQHGAASEADRVLAEVLASAHAAAQESARRLDAIAEQIDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AV  Q  LAVDTP+GAREF  FL+AKQ EI +VV  A EL RAK  VL+ LRAQY+   R
Sbjct  61   AVAHQADLAVDTPLGAREFHKFLLAKQHEIASVVTEAQELSRAKRVVLENLRAQYSAGNR  120


>gi|118465006|ref|YP_879343.1| hypothetical protein MAV_0043 [Mycobacterium avium 104]
 gi|118166293|gb|ABK67190.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=120

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 71/120 (60%), Positives = 88/120 (74%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            M EQ G S+  ++ R++ LA QH A +E+DR LA+VLASAHAA +ES RRLDAIA ++DR
Sbjct  1    MPEQPGFSLEAVEARRSALADQHGAASESDRVLAEVLASAHAAAQESARRLDAIAEQIDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AV  Q  LAVDTP+GAREF  FL+AKQ EI +V+  A EL RAK  VL+ LRAQY+   R
Sbjct  61   AVAHQADLAVDTPLGAREFHKFLLAKQHEIASVITEAQELSRAKRVVLENLRAQYSAGNR  120


>gi|336459448|gb|EGO38390.1| Biofilm regulator BssS [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=120

 Score =  128 bits (321),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 71/120 (60%), Positives = 87/120 (73%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            M EQ   S+  ++ R++ LA QH A +EADR LA+VLASAHAA +ES RRLDAIA ++DR
Sbjct  1    MPEQPEYSLEAVEARRSALADQHGAASEADRVLAEVLASAHAAAQESARRLDAIAEQIDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AV  Q  LA+DTP+GAREF  FL+AKQ EI +VV  A EL RAK  VL+ LRAQY+   R
Sbjct  61   AVAHQADLAIDTPLGAREFHKFLLAKQHEIASVVTEAQELGRAKRVVLENLRAQYSAGNR  120


>gi|342860247|ref|ZP_08716899.1| hypothetical protein MCOL_15260 [Mycobacterium colombiense CECT 
3035]
 gi|342132625|gb|EGT85854.1| hypothetical protein MCOL_15260 [Mycobacterium colombiense CECT 
3035]
Length=121

 Score =  127 bits (319),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 68/113 (61%), Positives = 83/113 (74%), Gaps = 0/113 (0%)

Query  3    EQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAV  62
            +Q G S+  ++ R++ LA QH   +EADR L DVL SAH A RESVRRLD+IA ++D A 
Sbjct  4    QQPGPSLEAVEARRSALASQHGTASEADRVLTDVLTSAHEAARESVRRLDSIAEQIDHAT  63

Query  63   PDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
              Q  LA+DTPMGAREFQ FL+AKQREI +VVA A E  +AK AVL+ LRAQY
Sbjct  64   VHQADLALDTPMGAREFQKFLMAKQREIASVVAEAREFGQAKRAVLQSLRAQY  116


>gi|41406135|ref|NP_958971.1| hypothetical protein MAP0037 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394483|gb|AAS02354.1| hypothetical protein MAP_0037 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=120

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 70/120 (59%), Positives = 86/120 (72%), Gaps = 0/120 (0%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            M EQ   S+  ++ R++ LA QH A +EADR LA+VLASAHAA +ES RRLDA A ++DR
Sbjct  1    MPEQPEYSLEAVEARRSALADQHGAASEADRVLAEVLASAHAAAQESARRLDASAEQIDR  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR  120
            AV  Q  LA+DTP+GAREF  FL+AKQ EI +VV  A EL RAK  VL+ LRAQY+   R
Sbjct  61   AVAHQADLAIDTPLGAREFHKFLLAKQHEIASVVTEAQELGRAKRVVLENLRAQYSAGNR  120


>gi|296167100|ref|ZP_06849510.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897542|gb|EFG77138.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=110

 Score =  118 bits (295),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 66/104 (64%), Positives = 75/104 (73%), Gaps = 0/104 (0%)

Query  12   IQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVD  71
            +Q RQ+ L  Q   VA+ADR LA+VL SAHA MRE  RRLDAIA ++D A   Q  LA+D
Sbjct  1    MQARQSALVGQQGTVADADRVLAEVLTSAHAEMREGARRLDAIADQIDHATVHQAGLAID  60

Query  72   TPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            TPMGAREFQ FL+AKQREI AVV  A  L RAK AVL+ LR QY
Sbjct  61   TPMGAREFQRFLLAKQREITAVVDEARALSRAKKAVLEGLRDQY  104


>gi|333990938|ref|YP_004523552.1| hypothetical protein JDM601_2298 [Mycobacterium sp. JDM601]
 gi|333486906|gb|AEF36298.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=452

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 52/121 (43%), Positives = 65/121 (54%), Gaps = 2/121 (1%)

Query  1    MSEQAGSSVAVIQERQ-ALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELD  59
            M EQ G+     Q R+ +L+ RQ  A A  D  L+  L  A    RE  RRLD I AE+ 
Sbjct  1    MPEQRGAHAETAQSREVSLIVRQQTA-ARTDDVLSTALRGAVDHAREGRRRLDTIGAEIR  59

Query  60   RAVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPA  119
             A+ DQ   A DTP G R+FQ FL AK R+I  VVA      RA +A+L+ L + Y   A
Sbjct  60   DALGDQRAPASDTPAGVRQFQLFLAAKARDIRRVVADVAADSRAGTALLRSLGSDYGVAA  119

Query  120  R  120
            R
Sbjct  120  R  120


>gi|333989221|ref|YP_004521835.1| hypothetical protein JDM601_0581 [Mycobacterium sp. JDM601]
 gi|333485189|gb|AEF34581.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=411

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 44/117 (38%), Positives = 65/117 (56%), Gaps = 2/117 (1%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVL-ASAHAAMRESVRRLDAIAAELD  59
            M E+ G+     ++R+A LA +     + DR     L  +A  A+R   RRLD I AE+ 
Sbjct  1    MPEELGAHADAARDREAALATRLHTTTQLDRAFVATLRGAAQVALRGR-RRLDGIEAEIR  59

Query  60   RAVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYT  116
            +A+ +Q  LA+DTP GAR+FQ FL  K R+I  V+A       A++A ++ L   YT
Sbjct  60   QALANQQALALDTPAGARQFQQFLTVKTRDIHRVIADTVADSHARAAAVRSLGGGYT  116


>gi|289442140|ref|ZP_06431884.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289446299|ref|ZP_06436043.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289573347|ref|ZP_06453574.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 6 more sequence titles
 
gi|308371747|ref|ZP_07426086.2| hypothetical protein TMDG_02466 [Mycobacterium tuberculosis SUMu004]
 gi|289415059|gb|EFD12299.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289419257|gb|EFD16458.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537778|gb|EFD42356.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|308335672|gb|EFP24523.1| hypothetical protein TMDG_02466 [Mycobacterium tuberculosis SUMu004]
 gi|326905039|gb|EGE51972.1| hypothetical protein TBPG_02966 [Mycobacterium tuberculosis W-148]
Length=259

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 52/95 (55%), Gaps = 1/95 (1%)

Query  22   QHDAV-AEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQ  80
            QH  V AE DR +   L  A+ ++    RRL AI AE++ AV  Q  L +DTP GAR F 
Sbjct  5    QHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFS  64

Query  81   TFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
             FL  K  +I  V+AA     +A +A L+ L + Y
Sbjct  65   RFLATKAHDITRVLAATAAESQAGAARLRSLASSY  99


>gi|289756827|ref|ZP_06516205.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294996224|ref|ZP_06801915.1| hypothetical protein Mtub2_17396 [Mycobacterium tuberculosis 
210]
 gi|289712391|gb|EFD76403.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|339293764|gb|AEJ45875.1| hypothetical protein CCDC5079_0685 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297403|gb|AEJ49513.1| hypothetical protein CCDC5180_0676 [Mycobacterium tuberculosis 
CCDC5180]
Length=287

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 52/95 (55%), Gaps = 1/95 (1%)

Query  22   QHDAV-AEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQ  80
            QH  V AE DR +   L  A+ ++    RRL AI AE++ AV  Q  L +DTP GAR F 
Sbjct  33   QHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFS  92

Query  81   TFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
             FL  K  +I  V+AA     +A +A L+ L + Y
Sbjct  93   RFLATKAHDITRVLAATAAESQAGAARLRSLASSY  127


>gi|15607879|ref|NP_215253.1| hypothetical protein Rv0739 [Mycobacterium tuberculosis H37Rv]
 gi|15840148|ref|NP_335185.1| hypothetical protein MT0764 [Mycobacterium tuberculosis CDC1551]
 gi|148660515|ref|YP_001282038.1| hypothetical protein MRA_0748 [Mycobacterium tuberculosis H37Ra]
 18 more sequence titles
 
gi|167968300|ref|ZP_02550577.1| hypothetical protein MtubH3_09824 [Mycobacterium tuberculosis 
H37Ra]
 gi|253797683|ref|YP_003030684.1| hypothetical protein TBMG_00753 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231057|ref|ZP_04924384.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254549703|ref|ZP_05140150.1| hypothetical protein Mtube_04440 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289760867|ref|ZP_06520245.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|297633241|ref|ZP_06951021.1| hypothetical protein MtubK4_03915 [Mycobacterium tuberculosis 
KZN 4207]
 gi|308379853|ref|ZP_07487855.2| hypothetical protein TMKG_04027 [Mycobacterium tuberculosis SUMu011]
 gi|313657548|ref|ZP_07814428.1| hypothetical protein MtubKV_03960 [Mycobacterium tuberculosis 
KZN V2475]
 gi|14195432|sp|O53802.1|Y739_MYCTU RecName: Full=Uncharacterized protein Rv0739/MT0764
 gi|2911013|emb|CAA17506.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880300|gb|AAK44999.1| hypothetical protein MT0764 [Mycobacterium tuberculosis CDC1551]
 gi|124600116|gb|EAY59126.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|148504667|gb|ABQ72476.1| hypothetical protein MRA_0748 [Mycobacterium tuberculosis H37Ra]
 gi|253319186|gb|ACT23789.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289708373|gb|EFD72389.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|308363477|gb|EFP52328.1| hypothetical protein TMKG_04027 [Mycobacterium tuberculosis SUMu011]
 gi|328457463|gb|AEB02886.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|344218564|gb|AEM99194.1| hypothetical protein MTCTRI2_0755 [Mycobacterium tuberculosis 
CTRI-2]
Length=268

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 52/95 (55%), Gaps = 1/95 (1%)

Query  22   QHDAV-AEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQ  80
            QH  V AE DR +   L  A+ ++    RRL AI AE++ AV  Q  L +DTP GAR F 
Sbjct  14   QHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFS  73

Query  81   TFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
             FL  K  +I  V+AA     +A +A L+ L + Y
Sbjct  74   RFLATKAHDITRVLAATAAESQAGAARLRSLASSY  108


>gi|289568686|ref|ZP_06448913.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289744463|ref|ZP_06503841.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749248|ref|ZP_06508626.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 7 more sequence titles
 
gi|289752786|ref|ZP_06512164.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|298524230|ref|ZP_07011639.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|289542440|gb|EFD46088.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289684991|gb|EFD52479.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689835|gb|EFD57264.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289693373|gb|EFD60802.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|298494024|gb|EFI29318.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=282

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 52/95 (55%), Gaps = 1/95 (1%)

Query  22   QHDAV-AEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQ  80
            QH  V AE DR +   L  A+ ++    RRL AI AE++ AV  Q  L +DTP GAR F 
Sbjct  28   QHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFS  87

Query  81   TFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
             FL  K  +I  V+AA     +A +A L+ L + Y
Sbjct  88   RFLATKAHDITRVLAATAAESQAGAARLRSLASSY  122


>gi|31791925|ref|NP_854418.1| hypothetical protein Mb0760 [Mycobacterium bovis AF2122/97]
 gi|121636661|ref|YP_976884.1| hypothetical protein BCG_0789 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989133|ref|YP_002643820.1| hypothetical protein JTY_0759 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31617512|emb|CAD93622.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492308|emb|CAL70775.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224772246|dbj|BAH25052.1| hypothetical protein JTY_0759 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341600677|emb|CCC63347.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=282

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 52/95 (55%), Gaps = 1/95 (1%)

Query  22   QHDAV-AEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQ  80
            QH  V AE DR +   L  A+ ++    RRL AI AE++ AV  Q  L +DTP GAR F 
Sbjct  28   QHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFS  87

Query  81   TFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
             FL  K  +I  V+AA     +A +A L+ L + Y
Sbjct  88   RFLATKAHDITRVLAATAAESQAGAARLRSLASSY  122


>gi|148821944|ref|YP_001286698.1| hypothetical protein TBFG_10753 [Mycobacterium tuberculosis F11]
 gi|254363685|ref|ZP_04979731.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289552996|ref|ZP_06442206.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 25 more sequence titles
 
gi|297730221|ref|ZP_06959339.1| hypothetical protein MtubKR_03970 [Mycobacterium tuberculosis 
KZN R506]
 gi|306783394|ref|ZP_07421716.1| hypothetical protein TMCG_03553 [Mycobacterium tuberculosis SUMu003]
 gi|306794532|ref|ZP_07432834.1| hypothetical protein TMEG_02115 [Mycobacterium tuberculosis SUMu005]
 gi|306796497|ref|ZP_07434799.1| hypothetical protein TMFG_03412 [Mycobacterium tuberculosis SUMu006]
 gi|306802357|ref|ZP_07439025.1| hypothetical protein TMHG_03768 [Mycobacterium tuberculosis SUMu008]
 gi|306966764|ref|ZP_07479425.1| hypothetical protein TMIG_01648 [Mycobacterium tuberculosis SUMu009]
 gi|308231624|ref|ZP_07413188.2| hypothetical protein TMAG_02623 [Mycobacterium tuberculosis SUMu001]
 gi|308369973|ref|ZP_07419753.2| hypothetical protein TMBG_03346 [Mycobacterium tuberculosis SUMu002]
 gi|308375240|ref|ZP_07443234.2| hypothetical protein TMGG_03762 [Mycobacterium tuberculosis SUMu007]
 gi|308378706|ref|ZP_07483616.2| hypothetical protein TMJG_02487 [Mycobacterium tuberculosis SUMu010]
 gi|308396521|ref|ZP_07492359.2| hypothetical protein TMLG_03233 [Mycobacterium tuberculosis SUMu012]
 gi|134149199|gb|EBA41244.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148720471|gb|ABR05096.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|289437628|gb|EFD20121.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|308216740|gb|EFO76139.1| hypothetical protein TMAG_02623 [Mycobacterium tuberculosis SUMu001]
 gi|308325717|gb|EFP14568.1| hypothetical protein TMBG_03346 [Mycobacterium tuberculosis SUMu002]
 gi|308331885|gb|EFP20736.1| hypothetical protein TMCG_03553 [Mycobacterium tuberculosis SUMu003]
 gi|308337129|gb|EFP25980.1| hypothetical protein TMEG_02115 [Mycobacterium tuberculosis SUMu005]
 gi|308343154|gb|EFP32005.1| hypothetical protein TMFG_03412 [Mycobacterium tuberculosis SUMu006]
 gi|308347042|gb|EFP35893.1| hypothetical protein TMGG_03762 [Mycobacterium tuberculosis SUMu007]
 gi|308350925|gb|EFP39776.1| hypothetical protein TMHG_03768 [Mycobacterium tuberculosis SUMu008]
 gi|308355615|gb|EFP44466.1| hypothetical protein TMIG_01648 [Mycobacterium tuberculosis SUMu009]
 gi|308359574|gb|EFP48425.1| hypothetical protein TMJG_02487 [Mycobacterium tuberculosis SUMu010]
 gi|308367113|gb|EFP55964.1| hypothetical protein TMLG_03233 [Mycobacterium tuberculosis SUMu012]
 gi|323720866|gb|EGB29933.1| hypothetical protein TMMG_03446 [Mycobacterium tuberculosis CDC1551A]
Length=267

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 52/95 (55%), Gaps = 1/95 (1%)

Query  22   QHDAV-AEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQ  80
            QH  V AE DR +   L  A+ ++    RRL AI AE++ AV  Q  L +DTP GAR F 
Sbjct  13   QHIGVSAETDRAVVPKLRQAYDSLVCGRRRLGAIGAEIENAVAHQRALGLDTPAGARNFS  72

Query  81   TFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
             FL  K  +I  V+AA     +A +A L+ L + Y
Sbjct  73   RFLATKAHDITRVLAATAAESQAGAARLRSLASSY  107


>gi|333992654|ref|YP_004525268.1| hypothetical protein JDM601_4014 [Mycobacterium sp. JDM601]
 gi|333488622|gb|AEF38014.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=439

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Composition-based stats.
 Identities = 38/115 (34%), Positives = 59/115 (52%), Gaps = 2/115 (1%)

Query  1    MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDR  60
            M+E  G+     + R+  L  +  A A AD +   +L  A      S +RLDA+AAE+ +
Sbjct  1    MTENRGAFADAARARENKLVNRLAASAAADHDFEAILREAVRNNSASRQRLDAMAAEIRQ  60

Query  61   AVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            A      L  DTP G+R+FQ +L  K REI  +V  AH     ++ +++ L  +Y
Sbjct  61   AAATWPGL--DTPAGSRQFQRYLTGKAREIHKIVNDAHADSEHRAGLVRTLTNRY  113


>gi|333988681|ref|YP_004521295.1| hypothetical protein JDM601_0041 [Mycobacterium sp. JDM601]
 gi|333484649|gb|AEF34041.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=435

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 40/101 (40%), Positives = 56/101 (56%), Gaps = 3/101 (2%)

Query  4    QAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVP  63
            Q GS+V  ++  ++ LA+Q  A AE DR++   L  AH    E  RRLD +  E+  A  
Sbjct  53   QQGSAVRAMRTAESALAQQLSATAEFDRQIIAALRHAHKTTLEGRRRLDNVQTEIVGATQ  112

Query  64   DQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAK  104
              D   + T  GAREFQ FL+ K  EI+ VV  A++ D +K
Sbjct  113  HWD---LSTAAGAREFQRFLIVKLGEIIGVVEEANDDDTSK  150


>gi|333988699|ref|YP_004521313.1| hypothetical protein JDM601_0059 [Mycobacterium sp. JDM601]
 gi|333484667|gb|AEF34059.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=352

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 34/88 (39%), Positives = 51/88 (58%), Gaps = 2/88 (2%)

Query  28   EADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQTFLVAKQ  87
            E DR   ++L  AH    +S +RLDA+ AE+ +A       A++TP GAR+FQ +L  K 
Sbjct  24   ELDRSFQEILRGAHQFNAQSRQRLDALEAEIRQAA--AAWPALNTPAGARQFQAYLTGKT  81

Query  88   REIVAVVAAAHELDRAKSAVLKRLRAQY  115
            REI  VVA A    + ++A ++ L  +Y
Sbjct  82   REIHKVVADAAADSQQRAAQVQALTGRY  109


>gi|296165466|ref|ZP_06848001.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899181|gb|EFG78652.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=666

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 30/93 (33%), Positives = 53/93 (57%), Gaps = 4/93 (4%)

Query  3    EQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAV  62
            +Q+G +   +++ Q  L   +  +++A+ +L++VL +AHA      ++L+ I  ++  AV
Sbjct  223  QQSGKAADAVKKLQNELHNHYTKISDAEEKLSEVLLNAHATTSAGQQKLNDIQKKIIDAV  282

Query  63   PDQDQLAVDTPMGAREFQTFL---VAKQREIVA  92
             D   + +DTP G R F TFL   VA   E+VA
Sbjct  283  NDP-TMEIDTPTGERVFLTFLRNQVAAVNELVA  314


>gi|340625059|ref|YP_004743511.1| hypothetical protein MCAN_00251 [Mycobacterium canettii CIPT 
140010059]
 gi|340003249|emb|CCC42366.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=450

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 36/95 (38%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K R+I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLRDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|254819082|ref|ZP_05224083.1| hypothetical protein MintA_04103 [Mycobacterium intracellulare 
ATCC 13950]
Length=485

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY----TEPAR  120
            +DTP GAR+FQ FL+ K R+I AVV  A   D +KSA++    + Y     EP R
Sbjct  149  LDTPAGARDFQRFLIGKLRDIRAVVLNASLDDTSKSALMAAWTSLYDASKNEPNR  203


>gi|296167099|ref|ZP_06849509.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897541|gb|EFG77137.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=410

 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 30/46 (66%), Gaps = 0/46 (0%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            +DTP GAR+FQ FL+ K R+I AVV  A   D +KSA++    + Y
Sbjct  84   LDTPAGARDFQRFLIGKLRDIRAVVLNASLDDTSKSALMAAWTSLY  129


>gi|254773089|ref|ZP_05214605.1| hypothetical protein MaviaA2_00186 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=483

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 30/46 (66%), Gaps = 0/46 (0%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            +DTP GAR+FQ FL+ K R+I AVV  A   D +KSA++    + Y
Sbjct  146  LDTPAGARDFQRFLIGKLRDIRAVVLNASLDDTSKSALMAAWTSLY  191


>gi|118462713|ref|YP_879344.1| hypothetical protein MAV_0044 [Mycobacterium avium 104]
 gi|118164000|gb|ABK64897.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=483

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 30/46 (66%), Gaps = 0/46 (0%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            +DTP GAR+FQ FL+ K R+I AVV  A   D +KSA++    + Y
Sbjct  146  LDTPAGARDFQRFLIGKLRDIRAVVLNASLDDTSKSALMAAWTSLY  191


>gi|41406136|ref|NP_958972.1| hypothetical protein MAP0038 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394484|gb|AAS02355.1| hypothetical protein MAP_0038 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336459447|gb|EGO38389.1| Biofilm regulator BssS [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=483

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 30/46 (66%), Gaps = 0/46 (0%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            +DTP GAR+FQ FL+ K R+I AVV  A   D +KSA++    + Y
Sbjct  146  LDTPAGARDFQRFLIGKLRDIRAVVLNASLDDTSKSALMAAWTSLY  191


>gi|183980080|ref|YP_001848371.1| hypothetical protein MMAR_0045 [Mycobacterium marinum M]
 gi|183173406|gb|ACC38516.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=417

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 32/98 (33%), Positives = 51/98 (53%), Gaps = 2/98 (2%)

Query  19   LARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGARE  78
            LA Q+   ++ D ++   + +AH    +    LD +  E + AV  +  L  DTP GAR+
Sbjct  28   LAHQNSMSSQLDLQVIAAILNAHLTAVDGSEALDELQQETEAAVRTRSDL--DTPAGARD  85

Query  79   FQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYT  116
            FQ FL+ K R+I  VVA A   D +K+ ++    + Y 
Sbjct  86   FQRFLIGKLRDIREVVATASLDDTSKATLMAAWTSLYN  123


>gi|289764141|ref|ZP_06523519.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289711647|gb|EFD75663.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=448

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|15607168|ref|NP_214540.1| hypothetical protein Rv0026 [Mycobacterium tuberculosis H37Rv]
 gi|148659786|ref|YP_001281309.1| hypothetical protein MRA_0029 [Mycobacterium tuberculosis H37Ra]
 gi|148821217|ref|YP_001285971.1| hypothetical protein TBFG_10026 [Mycobacterium tuberculosis F11]
 21 more sequence titles
 
gi|167968158|ref|ZP_02550435.1| hypothetical protein MtubH3_09027 [Mycobacterium tuberculosis 
H37Ra]
 gi|254548958|ref|ZP_05139405.1| hypothetical protein Mtube_00575 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289747796|ref|ZP_06507174.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289760123|ref|ZP_06519501.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294995639|ref|ZP_06801330.1| hypothetical protein Mtub2_14317 [Mycobacterium tuberculosis 
210]
 gi|298527424|ref|ZP_07014833.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306795624|ref|ZP_07433926.1| hypothetical protein TMFG_02189 [Mycobacterium tuberculosis SUMu006]
 gi|307082486|ref|ZP_07491599.1| hypothetical protein TMLG_00758 [Mycobacterium tuberculosis SUMu012]
 gi|14195543|sp|P71596.2|YO26_MYCTU RecName: Full=Uncharacterized protein Rv0026/MT0029
 gi|1552581|emb|CAB02411.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148503938|gb|ABQ71747.1| hypothetical protein MRA_0029 [Mycobacterium tuberculosis H37Ra]
 gi|148719744|gb|ABR04369.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|289688324|gb|EFD55812.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289715687|gb|EFD79699.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497218|gb|EFI32512.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308343916|gb|EFP32767.1| hypothetical protein TMFG_02189 [Mycobacterium tuberculosis SUMu006]
 gi|308367776|gb|EFP56627.1| hypothetical protein TMLG_00758 [Mycobacterium tuberculosis SUMu012]
 gi|326905787|gb|EGE52720.1| hypothetical protein TBPG_03752 [Mycobacterium tuberculosis W-148]
 gi|339293104|gb|AEJ45215.1| hypothetical protein CCDC5079_0025 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339296753|gb|AEJ48863.1| hypothetical protein CCDC5180_0026 [Mycobacterium tuberculosis 
CCDC5180]
 gi|344217844|gb|AEM98474.1| hypothetical protein MTCTRI2_0029 [Mycobacterium tuberculosis 
CTRI-2]
Length=448

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|254366485|ref|ZP_04982529.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|134151997|gb|EBA44042.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
Length=448

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|15839400|ref|NP_334437.1| hypothetical protein MT0029 [Mycobacterium tuberculosis CDC1551]
 gi|254233430|ref|ZP_04926756.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|13879071|gb|AAK44251.1| hypothetical protein MT0029 [Mycobacterium tuberculosis CDC1551]
 gi|124603223|gb|EAY61498.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|323717365|gb|EGB26570.1| hypothetical protein TMMG_00445 [Mycobacterium tuberculosis CDC1551A]
Length=448

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|253796941|ref|YP_003029942.1| hypothetical protein TBMG_00026 [Mycobacterium tuberculosis KZN 
1435]
 gi|289552276|ref|ZP_06441486.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297632497|ref|ZP_06950277.1| hypothetical protein MtubK4_00145 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729468|ref|ZP_06958586.1| hypothetical protein MtubKR_00155 [Mycobacterium tuberculosis 
KZN R506]
 gi|313656797|ref|ZP_07813677.1| hypothetical protein MtubKV_00155 [Mycobacterium tuberculosis 
KZN V2475]
 gi|253318444|gb|ACT23047.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289436908|gb|EFD19401.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328456732|gb|AEB02155.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=448

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|289445551|ref|ZP_06435295.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289572602|ref|ZP_06452829.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289418509|gb|EFD15710.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537033|gb|EFD41611.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=477

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|49146165|ref|YP_025603.1| hypothetical protein MUP081c [Mycobacterium ulcerans Agy99]
 gi|42414799|emb|CAE46892.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=514

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 31/97 (32%), Positives = 53/97 (55%), Gaps = 1/97 (1%)

Query  19   LARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGARE  78
            LAR H A+ +AD +LAD +  A ++  E  +RL  +  E+   + D+   ++DTP G ++
Sbjct  120  LARNHSAINDADDQLADAVLKASSSSAEGHQRLQRLQQEIIDEI-DKLGSSLDTPAGQQQ  178

Query  79   FQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
               FL  K  +I+ V+  A     +++ VL  L A+Y
Sbjct  179  LAEFLQGKTGDILNVLKNAGLDSDSQARVLDGLSARY  215


>gi|289441393|ref|ZP_06431137.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289567911|ref|ZP_06448138.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289748490|ref|ZP_06507868.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289756085|ref|ZP_06515463.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289414312|gb|EFD11552.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289541664|gb|EFD45313.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289689077|gb|EFD56506.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289696672|gb|EFD64101.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=477

 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|339630109|ref|YP_004721751.1| hypothetical protein MAF_00260 [Mycobacterium africanum GM041182]
 gi|339329465|emb|CCC25100.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=450

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 52/95 (55%), Gaps = 4/95 (4%)

Query  22   QHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQT  81
            Q+ A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ 
Sbjct  93   QNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQR  150

Query  82   FLVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            FL+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  151  FLIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|169245942|gb|ACA50963.1| conserved hypothetical protein [Mycobacterium marinum DL240490]
Length=511

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 31/97 (32%), Positives = 53/97 (55%), Gaps = 1/97 (1%)

Query  19   LARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGARE  78
            LAR H A+ +AD +LAD +  A ++  E  +RL  +  E+   + D+   ++DTP G ++
Sbjct  120  LARNHSAINDADDQLADAVLKASSSSAEGRQRLQRLQQEIIDEI-DKLGSSLDTPAGQQQ  178

Query  79   FQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
               FL  K  +I+ V+  A     +++ VL  L A+Y
Sbjct  179  LAEFLQGKTGDILNVLKNAGLDSDSQARVLDGLSARY  215


>gi|209418107|ref|YP_002274136.1| hypothetical protein MULP_101 [Mycobacterium liflandii 128FXT]
 gi|169409239|gb|ACA57645.1| conserved hypothetical protein [Mycobacterium liflandii 128FXT]
Length=511

 Score = 44.3 bits (103),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 31/97 (32%), Positives = 53/97 (55%), Gaps = 1/97 (1%)

Query  19   LARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGARE  78
            LAR H A+ +AD +LAD +  A ++  E  +RL  +  E+   + D+   ++DTP G ++
Sbjct  120  LARNHSAINDADDQLADAVLKASSSSAEGRQRLQRLQQEIIDEI-DKLGSSLDTPAGQQQ  178

Query  79   FQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
               FL  K  +I+ V+  A     +++ VL  L A+Y
Sbjct  179  LAEFLQGKTGDILNVLKNAGLDSDSQARVLDGLSARY  215


>gi|342860246|ref|ZP_08716898.1| hypothetical protein MCOL_15255 [Mycobacterium colombiense CECT 
3035]
 gi|342132624|gb|EGT85853.1| hypothetical protein MCOL_15255 [Mycobacterium colombiense CECT 
3035]
Length=483

 Score = 42.4 bits (98),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 21/46 (46%), Positives = 29/46 (64%), Gaps = 0/46 (0%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQY  115
            +DTP GAR+FQ FL+ K R+I  VV  A   D +KSA++    + Y
Sbjct  149  LDTPAGARDFQRFLIGKLRDIREVVLNASLDDTSKSALMAAWTSLY  194


>gi|31791203|ref|NP_853696.1| hypothetical protein Mb0027 [Mycobacterium bovis AF2122/97]
 gi|121635936|ref|YP_976159.1| hypothetical protein BCG_0057 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224988409|ref|YP_002643076.1| hypothetical protein JTY_0027 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31616788|emb|CAD92889.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491583|emb|CAL70041.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224771522|dbj|BAH24328.1| hypothetical protein JTY_0027 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341599952|emb|CCC62620.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=477

 Score = 42.4 bits (98),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 34/94 (37%), Positives = 51/94 (55%), Gaps = 4/94 (4%)

Query  23   HDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGAREFQTF  82
            + A A+ D ++   + +AH    E    L  +  E++ AV  +  L  DTP GAR+FQ F
Sbjct  94   NSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDL--DTPAGARDFQRF  151

Query  83   LVAKQREIVAVVAAAHELDRA-KSAVLKRLRAQY  115
            L+ K ++I  VVA A  LD A KSA++    + Y
Sbjct  152  LIGKLKDIREVVATA-SLDAASKSALMAAWTSLY  184


>gi|240172400|ref|ZP_04751059.1| hypothetical protein MkanA1_23998 [Mycobacterium kansasii ATCC 
12478]
Length=423

 Score = 42.0 bits (97),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 20/47 (43%), Positives = 29/47 (62%), Gaps = 0/47 (0%)

Query  70   VDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYT  116
            +DTP GAR+FQ FL+ K R+I  VVA A   D +K+ ++    + Y 
Sbjct  85   LDTPAGARDFQRFLIGKLRDIREVVANASLDDTSKATLMAAWTSLYN  131


>gi|118615958|ref|YP_904290.1| hypothetical protein MUL_0044 [Mycobacterium ulcerans Agy99]
 gi|118568068|gb|ABL02819.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=421

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 30/98 (31%), Positives = 51/98 (53%), Gaps = 2/98 (2%)

Query  19   LARQHDAVAEADRELADVLASAHAAMRESVRRLDAIAAELDRAVPDQDQLAVDTPMGARE  78
            LA Q+   ++ D ++   + +AH    +    LD +  E + AV  + +  +DT  GAR+
Sbjct  28   LAHQNSMSSQLDLQVIAAILNAHLTAVDGSEALDELQQETEAAV--RTRSDLDTLAGARD  85

Query  79   FQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYT  116
            FQ FL+ K R+I  VVA A   D +K+ ++    + Y 
Sbjct  86   FQRFLIGKLRDIREVVATASLDDTSKATLMAAWTSLYN  123



Lambda     K      H
   0.317    0.125    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128530997826




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40