BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0028

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607170|ref|NP_214542.1|  hypothetical protein Rv0028 [Mycoba...   206    8e-52
gi|298527426|ref|ZP_07014835.1|  conserved hypothetical protein [...   204    5e-51
gi|240172402|ref|ZP_04751061.1|  hypothetical protein MkanA1_2400...   184    4e-45
gi|342860244|ref|ZP_08716896.1|  hypothetical protein MCOL_15245 ...   182    1e-44
gi|296167097|ref|ZP_06849507.1|  conserved hypothetical protein [...   182    2e-44
gi|254819080|ref|ZP_05224081.1|  hypothetical protein MintA_04093...   182    2e-44
gi|254773091|ref|ZP_05214607.1|  hypothetical protein MaviaA2_001...   181    4e-44
gi|183980082|ref|YP_001848373.1|  hypothetical protein MMAR_0047 ...   179    1e-43
gi|41406138|ref|NP_958974.1|  hypothetical protein MAP0040 [Mycob...   178    3e-43
gi|118615960|ref|YP_904292.1|  hypothetical protein MUL_0046 [Myc...   177    3e-43
gi|15839402|ref|NP_334439.1|  hypothetical protein MT0030.1 [Myco...   147    4e-34
gi|333988683|ref|YP_004521297.1|  hypothetical protein JDM601_004...   144    4e-33
gi|118463831|ref|YP_879346.1|  hypothetical protein MAV_0046 [Myc...   122    2e-26
gi|119855151|ref|YP_935756.1|  hypothetical protein Mkms_5766 [My...  37.7    0.53 
gi|240170252|ref|ZP_04748911.1|  hypothetical protein MkanA1_1313...  35.8    2.3  
gi|240168346|ref|ZP_04747005.1|  hypothetical protein MkanA1_0347...  34.3    6.3  


>gi|15607170|ref|NP_214542.1| hypothetical protein Rv0028 [Mycobacterium tuberculosis H37Rv]
 gi|31791205|ref|NP_853698.1| hypothetical protein Mb0029 [Mycobacterium bovis AF2122/97]
 gi|121635938|ref|YP_976161.1| hypothetical protein BCG_0059 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 78 more sequence titles
 
gi|148659788|ref|YP_001281311.1| hypothetical protein MRA_0031 [Mycobacterium tuberculosis H37Ra]
 gi|148821219|ref|YP_001285973.1| hypothetical protein TBFG_10028 [Mycobacterium tuberculosis F11]
 gi|167968160|ref|ZP_02550437.1| hypothetical protein MtubH3_09037 [Mycobacterium tuberculosis 
H37Ra]
 gi|224988411|ref|YP_002643078.1| hypothetical protein JTY_0029 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253796943|ref|YP_003029944.1| hypothetical protein TBMG_00028 [Mycobacterium tuberculosis KZN 
1435]
 gi|254233432|ref|ZP_04926758.1| hypothetical protein TBCG_00028 [Mycobacterium tuberculosis C]
 gi|254366487|ref|ZP_04982531.1| hypothetical protein TBHG_00028 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254548960|ref|ZP_05139407.1| hypothetical protein Mtube_00585 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289441395|ref|ZP_06431139.1| hypothetical protein TBLG_02138 [Mycobacterium tuberculosis T46]
 gi|289445553|ref|ZP_06435297.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289552278|ref|ZP_06441488.1| hypothetical protein TBXG_00028 [Mycobacterium tuberculosis KZN 
605]
 gi|289567913|ref|ZP_06448140.1| hypothetical protein TBJG_03045 [Mycobacterium tuberculosis T17]
 gi|289572604|ref|ZP_06452831.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747798|ref|ZP_06507176.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748492|ref|ZP_06507870.1| hypothetical protein TBDG_00380 [Mycobacterium tuberculosis T92]
 gi|289756087|ref|ZP_06515465.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289760125|ref|ZP_06519503.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764143|ref|ZP_06523521.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294995641|ref|ZP_06801332.1| hypothetical protein Mtub2_14327 [Mycobacterium tuberculosis 
210]
 gi|297632499|ref|ZP_06950279.1| hypothetical protein MtubK4_00155 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729470|ref|ZP_06958588.1| hypothetical protein MtubKR_00165 [Mycobacterium tuberculosis 
KZN R506]
 gi|306778320|ref|ZP_07416657.1| hypothetical protein TMAG_00699 [Mycobacterium tuberculosis SUMu001]
 gi|306778849|ref|ZP_07417186.1| hypothetical protein TMBG_02493 [Mycobacterium tuberculosis SUMu002]
 gi|306782639|ref|ZP_07420961.1| hypothetical protein TMCG_03741 [Mycobacterium tuberculosis SUMu003]
 gi|306787005|ref|ZP_07425327.1| hypothetical protein TMDG_01912 [Mycobacterium tuberculosis SUMu004]
 gi|306791563|ref|ZP_07429865.1| hypothetical protein TMEG_00452 [Mycobacterium tuberculosis SUMu005]
 gi|306795626|ref|ZP_07433928.1| hypothetical protein TMFG_02191 [Mycobacterium tuberculosis SUMu006]
 gi|306801602|ref|ZP_07438270.1| hypothetical protein TMHG_03025 [Mycobacterium tuberculosis SUMu008]
 gi|306805809|ref|ZP_07442477.1| hypothetical protein TMGG_01499 [Mycobacterium tuberculosis SUMu007]
 gi|306970207|ref|ZP_07482868.1| hypothetical protein TMIG_00309 [Mycobacterium tuberculosis SUMu009]
 gi|306974440|ref|ZP_07487101.1| hypothetical protein TMJG_01209 [Mycobacterium tuberculosis SUMu010]
 gi|307082148|ref|ZP_07491318.1| hypothetical protein TMKG_01207 [Mycobacterium tuberculosis SUMu011]
 gi|307082488|ref|ZP_07491601.1| hypothetical protein TMLG_00760 [Mycobacterium tuberculosis SUMu012]
 gi|313656799|ref|ZP_07813679.1| hypothetical protein MtubKV_00165 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630111|ref|YP_004721753.1| hypothetical protein MAF_00280 [Mycobacterium africanum GM041182]
 gi|340625061|ref|YP_004743513.1| hypothetical protein MCAN_00271 [Mycobacterium canettii CIPT 
140010059]
 gi|54039872|sp|P64670.1|Y029_MYCBO RecName: Full=Uncharacterized protein Mb0029
 gi|54042429|sp|P64669.1|Y028_MYCTU RecName: Full=Uncharacterized protein Rv0028/MT0030.1
 gi|1552583|emb|CAB02413.1| HYPOTHETICAL PROTEIN Rv0028 [Mycobacterium tuberculosis H37Rv]
 gi|31616790|emb|CAD92891.1| HYPOTHETICAL PROTEIN Mb0029 [Mycobacterium bovis AF2122/97]
 gi|121491585|emb|CAL70043.1| Hypothetical protein BCG_0059 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124603225|gb|EAY61500.1| hypothetical protein TBCG_00028 [Mycobacterium tuberculosis C]
 gi|134151999|gb|EBA44044.1| hypothetical protein TBHG_00028 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148503940|gb|ABQ71749.1| hypothetical protein MRA_0031 [Mycobacterium tuberculosis H37Ra]
 gi|148719746|gb|ABR04371.1| hypothetical protein TBFG_10028 [Mycobacterium tuberculosis F11]
 gi|224771524|dbj|BAH24330.1| hypothetical protein JTY_0029 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253318446|gb|ACT23049.1| hypothetical protein TBMG_00028 [Mycobacterium tuberculosis KZN 
1435]
 gi|289414314|gb|EFD11554.1| hypothetical protein TBLG_02138 [Mycobacterium tuberculosis T46]
 gi|289418511|gb|EFD15712.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289436910|gb|EFD19403.1| hypothetical protein TBXG_00028 [Mycobacterium tuberculosis KZN 
605]
 gi|289537035|gb|EFD41613.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289541666|gb|EFD45315.1| hypothetical protein TBJG_03045 [Mycobacterium tuberculosis T17]
 gi|289688326|gb|EFD55814.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689079|gb|EFD56508.1| hypothetical protein TBDG_00380 [Mycobacterium tuberculosis T92]
 gi|289696674|gb|EFD64103.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289711649|gb|EFD75665.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289715689|gb|EFD79701.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308213464|gb|EFO72863.1| hypothetical protein TMAG_00699 [Mycobacterium tuberculosis SUMu001]
 gi|308328181|gb|EFP17032.1| hypothetical protein TMBG_02493 [Mycobacterium tuberculosis SUMu002]
 gi|308332486|gb|EFP21337.1| hypothetical protein TMCG_03741 [Mycobacterium tuberculosis SUMu003]
 gi|308336298|gb|EFP25149.1| hypothetical protein TMDG_01912 [Mycobacterium tuberculosis SUMu004]
 gi|308339902|gb|EFP28753.1| hypothetical protein TMEG_00452 [Mycobacterium tuberculosis SUMu005]
 gi|308343918|gb|EFP32769.1| hypothetical protein TMFG_02191 [Mycobacterium tuberculosis SUMu006]
 gi|308347701|gb|EFP36552.1| hypothetical protein TMGG_01499 [Mycobacterium tuberculosis SUMu007]
 gi|308351618|gb|EFP40469.1| hypothetical protein TMHG_03025 [Mycobacterium tuberculosis SUMu008]
 gi|308352325|gb|EFP41176.1| hypothetical protein TMIG_00309 [Mycobacterium tuberculosis SUMu009]
 gi|308356225|gb|EFP45076.1| hypothetical protein TMJG_01209 [Mycobacterium tuberculosis SUMu010]
 gi|308360215|gb|EFP49066.1| hypothetical protein TMKG_01207 [Mycobacterium tuberculosis SUMu011]
 gi|308367778|gb|EFP56629.1| hypothetical protein TMLG_00760 [Mycobacterium tuberculosis SUMu012]
 gi|323717367|gb|EGB26572.1| hypothetical protein TMMG_00447 [Mycobacterium tuberculosis CDC1551A]
 gi|326905789|gb|EGE52722.1| hypothetical protein TBPG_03754 [Mycobacterium tuberculosis W-148]
 gi|328456734|gb|AEB02157.1| hypothetical protein TBSG_00028 [Mycobacterium tuberculosis KZN 
4207]
 gi|339293106|gb|AEJ45217.1| hypothetical protein CCDC5079_0027 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339296755|gb|AEJ48865.1| hypothetical protein CCDC5180_0028 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339329467|emb|CCC25102.1| hypothetical protein MAF_00280 [Mycobacterium africanum GM041182]
 gi|340003251|emb|CCC42368.1| hypothetical protein MCAN_00271 [Mycobacterium canettii CIPT 
140010059]
 gi|341599954|emb|CCC62622.1| hypothetical protein BCGM_0029 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344217846|gb|AEM98476.1| hypothetical protein MTCTRI2_0031 [Mycobacterium tuberculosis 
CTRI-2]
Length=101

 Score =  206 bits (524),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
            MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL
Sbjct  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60

Query  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101
            LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR
Sbjct  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101


>gi|298527426|ref|ZP_07014835.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298497220|gb|EFI32514.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=101

 Score =  204 bits (518),  Expect = 5e-51, Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)

Query  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
            MTDANPAFDTVHPSGHILVRSCRGGYMHSV LSEAAMETDAETLAEAILLTADVSCLKAL
Sbjct  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVPLSEAAMETDAETLAEAILLTADVSCLKAL  60

Query  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101
            LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR
Sbjct  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101


>gi|240172402|ref|ZP_04751061.1| hypothetical protein MkanA1_24008 [Mycobacterium kansasii ATCC 
12478]
Length=101

 Score =  184 bits (467),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 89/101 (89%), Positives = 93/101 (93%), Gaps = 0/101 (0%)

Query  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
            MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AMETDAETLAE IL TADVSCLKAL
Sbjct  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVTLSEGAMETDAETLAEGILRTADVSCLKAL  60

Query  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101
            LEVR+EI+AAGHTPSA VPT  DL+ AIEKLLAHQLRRR R
Sbjct  61   LEVRDEIIAAGHTPSASVPTDQDLDAAIEKLLAHQLRRRRR  101


>gi|342860244|ref|ZP_08716896.1| hypothetical protein MCOL_15245 [Mycobacterium colombiense CECT 
3035]
 gi|342132622|gb|EGT85851.1| hypothetical protein MCOL_15245 [Mycobacterium colombiense CECT 
3035]
Length=103

 Score =  182 bits (462),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 95/100 (95%), Gaps = 0/100 (0%)

Query  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
           MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AM+TDAETLA+ ILLTADVSCLKAL
Sbjct  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVALSEEAMQTDAETLAQGILLTADVSCLKAL  60

Query  61  LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRN  100
           LE+R+EIVAAGHTPSA+VPT  DL+ AIEKLLAH+LRRRN
Sbjct  61  LEIRDEIVAAGHTPSAEVPTPRDLDAAIEKLLAHKLRRRN  100


>gi|296167097|ref|ZP_06849507.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897539|gb|EFG77135.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=103

 Score =  182 bits (462),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 88/101 (88%), Positives = 95/101 (95%), Gaps = 0/101 (0%)

Query  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
            MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AMETDAETLA  ILLTADVSCLKAL
Sbjct  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVALSEEAMETDAETLARGILLTADVSCLKAL  60

Query  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101
            LE+R+EIVAAGHTPSA+VPT  DL+ AIEKLLAH+LRRR+R
Sbjct  61   LEIRDEIVAAGHTPSAEVPTPRDLDAAIEKLLAHKLRRRHR  101


>gi|254819080|ref|ZP_05224081.1| hypothetical protein MintA_04093 [Mycobacterium intracellulare 
ATCC 13950]
Length=103

 Score =  182 bits (461),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 95/100 (95%), Gaps = 0/100 (0%)

Query  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
           MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AMETDAETLA+ I+LTADVSCLKAL
Sbjct  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVALSEEAMETDAETLAQGIVLTADVSCLKAL  60

Query  61  LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRN  100
           LE+R+EIVAAGHTPSA+VPT  DL+ AIEKLLAH+LRRRN
Sbjct  61  LEIRDEIVAAGHTPSAEVPTPRDLDAAIEKLLAHKLRRRN  100


>gi|254773091|ref|ZP_05214607.1| hypothetical protein MaviaA2_00196 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=103

 Score =  181 bits (458),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 94/100 (94%), Gaps = 0/100 (0%)

Query  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
           MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AMETDAETLA+ ILLTADVSCLKAL
Sbjct  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVALSEEAMETDAETLAQGILLTADVSCLKAL  60

Query  61  LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRN  100
           LE+R+EIVAAGHTPSA+VPT  DL+ AIEKLLAH+LRRR 
Sbjct  61  LEIRDEIVAAGHTPSAEVPTPRDLDAAIEKLLAHKLRRRT  100


>gi|183980082|ref|YP_001848373.1| hypothetical protein MMAR_0047 [Mycobacterium marinum M]
 gi|183173408|gb|ACC38518.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=101

 Score =  179 bits (454),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 88/101 (88%), Positives = 92/101 (92%), Gaps = 0/101 (0%)

Query  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
            MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AMETDA  LAE ILLTADVSCLKAL
Sbjct  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVALSEGAMETDAVALAEGILLTADVSCLKAL  60

Query  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101
            LEVR EIVAAGHTPSA+VPT  DL+VAIE+LLAHQLR R R
Sbjct  61   LEVREEIVAAGHTPSAEVPTNRDLDVAIERLLAHQLRPRRR  101


>gi|41406138|ref|NP_958974.1| hypothetical protein MAP0040 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394486|gb|AAS02357.1| hypothetical protein MAP_0040 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336459445|gb|EGO38387.1| Protein of unknown function (DUF2694) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=103

 Score =  178 bits (451),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 93/100 (93%), Gaps = 0/100 (0%)

Query  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
           MTDANPAFDTVHPSGHILVRSC GGYMHSV+LSE AMETDAETLA+ ILLTADVSCLKAL
Sbjct  1   MTDANPAFDTVHPSGHILVRSCGGGYMHSVALSEEAMETDAETLAQGILLTADVSCLKAL  60

Query  61  LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRN  100
           LE+R+EIVAAGHTPSA+VPT  DL+ AIEKLLAH+LRRR 
Sbjct  61  LEIRDEIVAAGHTPSAEVPTPRDLDAAIEKLLAHKLRRRT  100


>gi|118615960|ref|YP_904292.1| hypothetical protein MUL_0046 [Mycobacterium ulcerans Agy99]
 gi|118568070|gb|ABL02821.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=134

 Score =  177 bits (450),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 87/99 (88%), Positives = 91/99 (92%), Gaps = 0/99 (0%)

Query  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
           MTDANPAFDTVHPSGHILVRSCRGGYMHSV+LSE AMETDA  LAE ILLTADVSCLKAL
Sbjct  1   MTDANPAFDTVHPSGHILVRSCRGGYMHSVALSEGAMETDAAALAEGILLTADVSCLKAL  60

Query  61  LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRR  99
           LEVR EIVAAGHTPSA+VPT  DL+VAIE+LLAHQLR R
Sbjct  61  LEVREEIVAAGHTPSAEVPTNRDLDVAIERLLAHQLRPR  99


>gi|15839402|ref|NP_334439.1| hypothetical protein MT0030.1 [Mycobacterium tuberculosis CDC1551]
 gi|13879073|gb|AAK44253.1| hypothetical protein MT0030.1 [Mycobacterium tuberculosis CDC1551]
Length=75

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  27   MHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNV  86
            MHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNV
Sbjct  1    MHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNV  60

Query  87   AIEKLLAHQLRRRNR  101
            AIEKLLAHQLRRRNR
Sbjct  61   AIEKLLAHQLRRRNR  75


>gi|333988683|ref|YP_004521297.1| hypothetical protein JDM601_0044 [Mycobacterium sp. JDM601]
 gi|333484652|gb|AEF34044.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=108

 Score =  144 bits (363),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 70/101 (70%), Positives = 82/101 (82%), Gaps = 0/101 (0%)

Query  1    MTDANPAFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKAL  60
            MT+ NPAFDT HPSG +L RSCRGGY+HSV+LSEAAM  DA+ LAEAI+L ADVS LKA 
Sbjct  1    MTEPNPAFDTTHPSGDVLFRSCRGGYLHSVALSEAAMTADADRLAEAIVLAADVSYLKAA  60

Query  61   LEVRNEIVAAGHTPSAQVPTTDDLNVAIEKLLAHQLRRRNR  101
            LE+R EIV+ GH+PSA VPTTDDL VA E+LL H+L   +R
Sbjct  61   LEIRGEIVSTGHSPSAAVPTTDDLRVATERLLNHRLHAGHR  101


>gi|118463831|ref|YP_879346.1| hypothetical protein MAV_0046 [Mycobacterium avium 104]
 gi|118165118|gb|ABK66015.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=77

 Score =  122 bits (306),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 61/74 (83%), Positives = 68/74 (92%), Gaps = 0/74 (0%)

Query  27  MHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNEIVAAGHTPSAQVPTTDDLNV  86
           MHSV+LSE AMETDAETLA+ ILLTADVSCLKALLE+R+EIVAAGHTPSA+VPT  DL+ 
Sbjct  1   MHSVALSEEAMETDAETLAQGILLTADVSCLKALLEIRDEIVAAGHTPSAEVPTPRDLDA  60

Query  87  AIEKLLAHQLRRRN  100
           AIEKLLAH+LRRR 
Sbjct  61  AIEKLLAHKLRRRT  74


>gi|119855151|ref|YP_935756.1| hypothetical protein Mkms_5766 [Mycobacterium sp. KMS]
 gi|119697869|gb|ABL94941.1| hypothetical protein Mkms_5766 [Mycobacterium sp. KMS]
Length=102

 Score = 37.7 bits (86),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 28/87 (33%), Positives = 41/87 (48%), Gaps = 2/87 (2%)

Query  7   AFDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKALLEVRNE  66
           AF    P   +LVR    G +  V L   AM  +   LA+ I+  ADV+ L+  + +R +
Sbjct  13  AFLARTPDDAVLVRVAVKGSILGVQLEPKAMRDNMHELAQRIMACADVAYLQGQVALREQ  72

Query  67  IVAAGHTP--SAQVPTTDDLNVAIEKL  91
           +  A   P   A  PT  DL  A ++L
Sbjct  73  MEHAKLDPVCYADFPTERDLAAARDRL  99


>gi|240170252|ref|ZP_04748911.1| hypothetical protein MkanA1_13138 [Mycobacterium kansasii ATCC 
12478]
Length=210

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 32/108 (30%), Positives = 47/108 (44%), Gaps = 19/108 (17%)

Query  8    FDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKA-------L  60
            F   +P G + V +  GG +H V LSE         LAE I + AD++  KA       +
Sbjct  75   FTVTNPQGSVSVSALLGGIIHQVELSEEVTTMAEPKLAEEIFVIADLARQKARAAQYTFM  134

Query  61   LEVRNEIVAAGHTPSAQ----------VPTTDDLNVAIEKLLAHQLRR  98
            L+   EI    H  SAQ          +PT ++   A +K+ A +  R
Sbjct  135  LQSVREIKNEQH--SAQLLEFVGTTLNLPTPEEAAAAEKKVFATRYGR  180


>gi|240168346|ref|ZP_04747005.1| hypothetical protein MkanA1_03477 [Mycobacterium kansasii ATCC 
12478]
Length=180

 Score = 34.3 bits (77),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 20/76 (27%), Positives = 36/76 (48%), Gaps = 7/76 (9%)

Query  8    FDTVHPSGHILVRSCRGGYMHSVSLSEAAMETDAETLAEAILLTADVSCLKA-------L  60
            F   +P G + V +  GG +  +++++ A       LAE I + AD++  KA       +
Sbjct  64   FTVTNPQGSVSVTAMMGGIIQKITVTDKASRMTESGLAEEIFVIADLARQKARAAQHTFM  123

Query  61   LEVRNEIVAAGHTPSA  76
            +E  NE+   G   +A
Sbjct  124  MESMNELAGDGEEANA  139



Lambda     K      H
   0.317    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128767090968




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40