BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0030

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148821221|ref|YP_001285975.1|  hypothetical protein TBFG_10030...   216    1e-54
gi|15607172|ref|NP_214544.1|  hypothetical protein Rv0030 [Mycoba...   216    1e-54
gi|289748494|ref|ZP_06507872.1|  hypothetical protein TBDG_00382 ...   189    1e-46
gi|41406140|ref|NP_958976.1|  hypothetical protein MAP0042 [Mycob...   168    2e-40
gi|254773094|ref|ZP_05214610.1|  hypothetical protein MaviaA2_002...   167    3e-40
gi|254819078|ref|ZP_05224079.1|  hypothetical protein MintA_04083...   167    5e-40
gi|342860242|ref|ZP_08716894.1|  hypothetical protein MCOL_15235 ...   166    1e-39
gi|296167094|ref|ZP_06849504.1|  conserved hypothetical protein [...   166    1e-39
gi|240172405|ref|ZP_04751064.1|  hypothetical protein MkanA1_2402...   148    3e-34
gi|183980084|ref|YP_001848375.1|  hypothetical protein MMAR_0049 ...   145    2e-33
gi|333988686|ref|YP_004521300.1|  hypothetical protein JDM601_004...   142    2e-32
gi|118615962|ref|YP_904294.1|  hypothetical protein MUL_0048 [Myc...   136    1e-30
gi|334321979|ref|XP_001366833.2|  PREDICTED: e3 ubiquitin-protein...  39.7    0.13 
gi|20092160|ref|NP_618235.1|  sensory transduction histidine kina...  38.5    0.35 
gi|296164010|ref|ZP_06846634.1|  conserved hypothetical protein [...  37.7    0.55 
gi|21623856|dbj|BAC00994.1|  skeletrophin gamma [Homo sapiens]        37.7    0.63 
gi|119576580|gb|EAW56176.1|  mindbomb homolog 2 (Drosophila), iso...  37.7    0.63 
gi|282394032|ref|NP_001164157.1|  E3 ubiquitin-protein ligase MIB...  37.4    0.65 
gi|344253833|gb|EGW09937.1|  E3 ubiquitin-protein ligase MIB2 [Cr...  37.4    0.70 
gi|49146161|ref|YP_025599.1|  hypothetical protein MUP077c [Mycob...  34.7    4.3  
gi|172058467|ref|YP_001814927.1|  flagellar hook-associated prote...  34.7    5.0  
gi|254293390|ref|YP_003059413.1|  peptidase U62 modulator of DNA ...  34.7    5.3  
gi|298208828|ref|YP_003717007.1|  hypothetical protein CA2559_113...  34.3    6.6  
gi|171909587|ref|ZP_02925057.1|  multi-sensor hybrid histidine ki...  33.9    7.7  


>gi|148821221|ref|YP_001285975.1| hypothetical protein TBFG_10030 [Mycobacterium tuberculosis F11]
 gi|253796946|ref|YP_003029947.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|254548963|ref|ZP_05139410.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 11 more sequence titles
 Length=191

 Score =  216 bits (550),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60
            MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD
Sbjct  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60

Query  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ
Sbjct  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109


>gi|15607172|ref|NP_214544.1| hypothetical protein Rv0030 [Mycobacterium tuberculosis H37Rv]
 gi|15839406|ref|NP_334443.1| hypothetical protein MT0034 [Mycobacterium tuberculosis CDC1551]
 gi|31791207|ref|NP_853700.1| hypothetical protein Mb0031 [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=109

 Score =  216 bits (549),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60
            MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD
Sbjct  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60

Query  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ
Sbjct  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109


>gi|289748494|ref|ZP_06507872.1| hypothetical protein TBDG_00382 [Mycobacterium tuberculosis T92]
 gi|289689081|gb|EFD56510.1| hypothetical protein TBDG_00382 [Mycobacterium tuberculosis T92]
Length=96

 Score =  189 bits (480),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  14   LSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVM  73
            +SDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVM
Sbjct  1    MSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVM  60

Query  74   TGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            TGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ
Sbjct  61   TGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  96


>gi|41406140|ref|NP_958976.1| hypothetical protein MAP0042 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118466858|ref|YP_879349.1| hypothetical protein MAV_0049 [Mycobacterium avium 104]
 gi|41394488|gb|AAS02359.1| hypothetical protein MAP_0042 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118168145|gb|ABK69042.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336459443|gb|EGO38385.1| Protein of unknown function (DUF2710) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=107

 Score =  168 bits (426),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 87/108 (81%), Positives = 94/108 (88%), Gaps = 3/108 (2%)

Query  2    VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG  61
            VS S SR+    LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AVANSDG
Sbjct  3    VSDSGSRA---NLSDKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIYAVANSDG  59

Query  62   RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            RLL+LTLHPGVMTGY HGELADR+NLAITALR+E EAENRA YGG L 
Sbjct  60   RLLKLTLHPGVMTGYGHGELADRLNLAITALREEAEAENRASYGGPLH  107


>gi|254773094|ref|ZP_05214610.1| hypothetical protein MaviaA2_00211 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=105

 Score =  167 bits (424),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 86/105 (82%), Positives = 93/105 (89%), Gaps = 1/105 (0%)

Query  5    SDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLL  64
            SDS S  + LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AVANSDGRLL
Sbjct  2    SDSGSR-ANLSDKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIYAVANSDGRLL  60

Query  65   ELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            +LTLHPGVMTGY HGELADR+NLAITALR+E EAENRA YGG L 
Sbjct  61   KLTLHPGVMTGYGHGELADRLNLAITALREEAEAENRASYGGPLH  105


>gi|254819078|ref|ZP_05224079.1| hypothetical protein MintA_04083 [Mycobacterium intracellulare 
ATCC 13950]
Length=105

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 86/108 (80%), Positives = 94/108 (88%), Gaps = 3/108 (2%)

Query  2    VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG  61
            +SGS SR+    LSD+D VESVLR+LSEAADKWEALV QAE VTYSVDLGDV AVANSDG
Sbjct  1    MSGSGSRA---NLSDKDRVESVLRELSEAADKWEALVAQAEAVTYSVDLGDVYAVANSDG  57

Query  62   RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            RL++LTLHPGVMTGY HGELADR+NLAITALR+E EAENRA YGG L 
Sbjct  58   RLIKLTLHPGVMTGYGHGELADRLNLAITALREEAEAENRASYGGPLH  105


>gi|342860242|ref|ZP_08716894.1| hypothetical protein MCOL_15235 [Mycobacterium colombiense CECT 
3035]
 gi|342132620|gb|EGT85849.1| hypothetical protein MCOL_15235 [Mycobacterium colombiense CECT 
3035]
Length=106

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 84/109 (78%), Positives = 94/109 (87%), Gaps = 3/109 (2%)

Query  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60
            MV+ S SR+    LS++DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AVANSD
Sbjct  1    MVADSGSRA---NLSEKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIHAVANSD  57

Query  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GRLL+LTLHPGVMTGY HGELA+R+NLAITALR+E EAENR  YGG L 
Sbjct  58   GRLLKLTLHPGVMTGYGHGELAERLNLAITALREEAEAENRVSYGGPLH  106


>gi|296167094|ref|ZP_06849504.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897536|gb|EFG77132.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=123

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 86/108 (80%), Positives = 94/108 (88%), Gaps = 1/108 (0%)

Query  2    VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG  61
            VS SDS    + LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AV NSDG
Sbjct  17   VSVSDSGGR-ANLSDKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIYAVTNSDG  75

Query  62   RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            RLLELTLHPGVM+GYAHGELADR+NLAI+ALR+E EAENRA YGG L 
Sbjct  76   RLLELTLHPGVMSGYAHGELADRLNLAISALREEAEAENRASYGGPLH  123


>gi|240172405|ref|ZP_04751064.1| hypothetical protein MkanA1_24023 [Mycobacterium kansasii ATCC 
12478]
Length=106

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 85/109 (78%), Positives = 95/109 (88%), Gaps = 3/109 (2%)

Query  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60
            MV GS  R+E   LSD+DLVESVLR+LSEAADKWEALV QAETVTYSVDLGD+ A+ANSD
Sbjct  1    MVPGSGDRAE---LSDKDLVESVLRELSEAADKWEALVAQAETVTYSVDLGDIHAIANSD  57

Query  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GRLL+L LHPGVMTGY+HGELADR+N AI ALR+E EAEN+ARYGG L 
Sbjct  58   GRLLKLRLHPGVMTGYSHGELADRLNAAIAALREEAEAENQARYGGSLH  106


>gi|183980084|ref|YP_001848375.1| hypothetical protein MMAR_0049 [Mycobacterium marinum M]
 gi|183173410|gb|ACC38520.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=106

 Score =  145 bits (365),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 87/109 (80%), Positives = 95/109 (88%), Gaps = 3/109 (2%)

Query  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60
            MVSG   R+E   LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGDV AVANSD
Sbjct  1    MVSGPGGRAE---LSDKDLVESVLRELSEAADKWEALVAQAENVTYSVDLGDVHAVANSD  57

Query  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GRLL+LTLHPGVMTGY+HGELADR+N+A+ ALR E EAEN ARYGG LQ
Sbjct  58   GRLLKLTLHPGVMTGYSHGELADRLNVALAALRAEAEAENEARYGGPLQ  106


>gi|333988686|ref|YP_004521300.1| hypothetical protein JDM601_0046 [Mycobacterium sp. JDM601]
 gi|333484654|gb|AEF34046.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=105

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/105 (69%), Positives = 87/105 (83%), Gaps = 3/105 (2%)

Query  2    VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG  61
            +SG DSR+E   LSD+DLVESVLRDL EAA+KWEALV +AE  TYSVDLGDVRAVANSDG
Sbjct  1    MSGPDSRAE---LSDKDLVESVLRDLREAAEKWEALVAEAENTTYSVDLGDVRAVANSDG  57

Query  62   RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGG  106
            RLLELTLHP V++ Y + EL++R+N+  TALR+E E++  ARYG 
Sbjct  58   RLLELTLHPCVVSDYTYSELSERLNVVFTALREEAESDFEARYGS  102


>gi|118615962|ref|YP_904294.1| hypothetical protein MUL_0048 [Mycobacterium ulcerans Agy99]
 gi|118568072|gb|ABL02823.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=106

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 84/109 (78%), Positives = 93/109 (86%), Gaps = 3/109 (2%)

Query  1    MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD  60
            MVS    R+E   LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLG V AVANSD
Sbjct  1    MVSRPGGRAE---LSDKDLVESVLRELSEAADKWEALVAQAENVTYSVDLGCVHAVANSD  57

Query  61   GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GRLL+LTLHPGVMTGY+H ELADR+N+A+ ALR+E EAEN ARYGG LQ
Sbjct  58   GRLLKLTLHPGVMTGYSHAELADRLNVALAALREEAEAENEARYGGPLQ  106


>gi|334321979|ref|XP_001366833.2| PREDICTED: e3 ubiquitin-protein ligase MIB2 [Monodelphis domestica]
Length=903

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 28/90 (32%), Positives = 39/90 (44%), Gaps = 10/90 (11%)

Query  5    SDSRSEPSQLSDRD---LVESVLRDLSEAADKWEA----LVTQAETVTYSVDLGDVRAVA  57
            + + S P Q  D+    L   +LR++ E    W       + Q  TV    D GDVR   
Sbjct  250  ASAESPPFQHGDKVKCLLAMDILREMQEGHGGWNPKMAEFIGQTGTVHRITDRGDVRVQF  309

Query  58   NSDGRLLELTLHPGVMTGYAHGELADRVNL  87
            NSD R    T HPG +T +    + D V +
Sbjct  310  NSDAR---WTFHPGALTKHNTFWVGDMVRV  336


>gi|20092160|ref|NP_618235.1| sensory transduction histidine kinase [Methanosarcina acetivorans 
C2A]
 gi|19917385|gb|AAM06715.1| sensory transduction histidine kinase [Methanosarcina acetivorans 
C2A]
Length=673

 Score = 38.5 bits (88),  Expect = 0.35, Method: Composition-based stats.
 Identities = 29/91 (32%), Positives = 41/91 (46%), Gaps = 14/91 (15%)

Query  14   LSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELT------  67
            ++DRD V+  LR   E   K+  +  Q E + Y  D        N DG + E+T      
Sbjct  174  ITDRDEVQRTLR---EKGKKYRFITEQTEMIIYEFDFES--NTGNLDGAVEEVTGYSVKD  228

Query  68   ---LHPGVMTGYAHGELADRVNLAITALRDE  95
               + P V  GY H E  D+VN  IT ++ E
Sbjct  229  FQSIPPHVWMGYLHPEELDQVNENITKIQKE  259


>gi|296164010|ref|ZP_06846634.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900634|gb|EFG80016.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=128

 Score = 37.7 bits (86),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 22/59 (38%), Positives = 30/59 (51%), Gaps = 0/59 (0%)

Query  51   GDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ  109
            GDV    NS G+L  L+L  G  T Y+HG LA+ +N  I    +    E  +  GG+ Q
Sbjct  49   GDVVLSVNSQGQLTSLSLAQGCTTRYSHGALAELINTTIDEAVNAAAEETASVGGGQDQ  107


>gi|21623856|dbj|BAC00994.1| skeletrophin gamma [Homo sapiens]
Length=1009

 Score = 37.7 bits (86),  Expect = 0.63, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 6/71 (8%)

Query  9    SEPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLE  65
            S+P Q  D+    L   VLR++ E    W   + +  TV    D GDVR   N + R   
Sbjct  312  SQPFQHGDKVKCLLDTDVLREMQEGHGGWNPRMAETGTVHRITDRGDVRVQFNHETR---  368

Query  66   LTLHPGVMTGY  76
             T HPG +T +
Sbjct  369  WTFHPGALTKH  379


>gi|119576580|gb|EAW56176.1| mindbomb homolog 2 (Drosophila), isoform CRA_c [Homo sapiens]
Length=932

 Score = 37.7 bits (86),  Expect = 0.63, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 6/71 (8%)

Query  9    SEPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLE  65
            S+P Q  D+    L   VLR++ E    W   + +  TV    D GDVR   N + R   
Sbjct  312  SQPFQHGDKVKCLLDTDVLREMQEGHGGWNPRMAETGTVHRITDRGDVRVQFNHETR---  368

Query  66   LTLHPGVMTGY  76
             T HPG +T +
Sbjct  369  WTFHPGALTKH  379


>gi|282394032|ref|NP_001164157.1| E3 ubiquitin-protein ligase MIB2 isoform 2 [Homo sapiens]
Length=1066

 Score = 37.4 bits (85),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 6/71 (8%)

Query  9    SEPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLE  65
            S+P Q  D+    L   VLR++ E    W   + +  TV    D GDVR   N + R   
Sbjct  369  SQPFQHGDKVKCLLDTDVLREMQEGHGGWNPRMAETGTVHRITDRGDVRVQFNHETR---  425

Query  66   LTLHPGVMTGY  76
             T HPG +T +
Sbjct  426  WTFHPGALTKH  436


>gi|344253833|gb|EGW09937.1| E3 ubiquitin-protein ligase MIB2 [Cricetulus griseus]
Length=978

 Score = 37.4 bits (85),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 24/70 (35%), Positives = 32/70 (46%), Gaps = 6/70 (8%)

Query  10   EPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLEL  66
            +P Q  D+    L   VLRD+ E    W   + +  TV    D GDVR   N + R    
Sbjct  255  QPFQRGDKVKCLLDTDVLRDMQEGHGGWNPRMAEMGTVHRITDRGDVRVQFNHETR---W  311

Query  67   TLHPGVMTGY  76
            T HPG +T +
Sbjct  312  TFHPGALTKH  321


>gi|49146161|ref|YP_025599.1| hypothetical protein MUP077c [Mycobacterium ulcerans Agy99]
 gi|42414795|emb|CAE46888.1| conserved hypothetical [Mycobacterium ulcerans Agy99]
Length=130

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 10/98 (10%)

Query  11   PSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDL------GDVRAVANSDGRLL  64
            P   +D+DL  SV+  L   +     ++ + +     +D+      GDV    N+ G+L 
Sbjct  7    PRYQADKDLTASVVTRLERVSSMLSKVLEEID----GIDVEAIGGDGDVVLSVNAHGQLT  62

Query  65   ELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRA  102
             L+L  G  T Y HG LA+ +N  +    +   AE  A
Sbjct  63   SLSLAQGCTTRYTHGGLAELINTTLGEAVNAAAAETSA  100


>gi|172058467|ref|YP_001814927.1| flagellar hook-associated protein 3 [Exiguobacterium sibiricum 
255-15]
 gi|171990988|gb|ACB61910.1| flagellar hook-associated protein 3 [Exiguobacterium sibiricum 
255-15]
Length=320

 Score = 34.7 bits (78),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 27/84 (33%), Positives = 41/84 (49%), Gaps = 12/84 (14%)

Query  18   DLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMT---  74
            DL +S L +++ A  +   L TQA T TY  D    +A+ +  G+L+E   H G M    
Sbjct  74   DLTDSALNEVTSAMSRVRELTTQAATDTY--DATQRKAIQSEVGQLIE---HIGTMANTK  128

Query  75   ----GYAHGELADRVNLAITALRD  94
                G  +G   D+  ++I  LRD
Sbjct  129  YNEKGIFNGTATDKPFVSIEGLRD  152


>gi|254293390|ref|YP_003059413.1| peptidase U62 modulator of DNA gyrase [Hirschia baltica ATCC 
49814]
 gi|254041921|gb|ACT58716.1| peptidase U62 modulator of DNA gyrase [Hirschia baltica ATCC 
49814]
Length=464

 Score = 34.7 bits (78),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 21/67 (32%), Positives = 32/67 (48%), Gaps = 0/67 (0%)

Query  12  SQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPG  71
           S+L DR     +L D    AD  E  V  A + ++  D G +++ A   G+   L +  G
Sbjct  2   SELYDRSAASKILDDALHGADDGELYVETARSESFVFDDGRLKSAAFDTGKGFGLRVVSG  61

Query  72  VMTGYAH  78
             TG+AH
Sbjct  62  ETTGFAH  68


>gi|298208828|ref|YP_003717007.1| hypothetical protein CA2559_11328 [Croceibacter atlanticus HTCC2559]
 gi|83848755|gb|EAP86624.1| hypothetical protein CA2559_11328 [Croceibacter atlanticus HTCC2559]
Length=825

 Score = 34.3 bits (77),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 19/52 (37%), Positives = 28/52 (54%), Gaps = 4/52 (7%)

Query  44   VTYSVDLGDVRAVANSDGRLLELTLH----PGVMTGYAHGELADRVNLAITA  91
            V Y+VD  DVRA+   + +LLE  L        +T Y + +L DR+NL +  
Sbjct  772  VYYTVDQSDVRALVRGELKLLERQLKSARSSNTLTKYHYDDLEDRINLILNP  823


>gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine kinase [Verrucomicrobium spinosum 
DSM 4136]
Length=957

 Score = 33.9 bits (76),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (51%), Gaps = 1/75 (1%)

Query  17   RDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDV-RAVANSDGRLLELTLHPGVMTG  75
            R +V++V+RD+SE     EAL T     + S +   +  A+  +DGR L++      M G
Sbjct  425  RTIVQAVVRDISERKRAEEALRTSEARFSSSFESAAIGMALVGTDGRFLKVNAALCAMLG  484

Query  76   YAHGELADRVNLAIT  90
            Y   EL ++    IT
Sbjct  485  YTPEELMEKTFQEIT  499



Lambda     K      H
   0.312    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129509500864




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40