BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0030 Length=109 Score E Sequences producing significant alignments: (Bits) Value gi|148821221|ref|YP_001285975.1| hypothetical protein TBFG_10030... 216 1e-54 gi|15607172|ref|NP_214544.1| hypothetical protein Rv0030 [Mycoba... 216 1e-54 gi|289748494|ref|ZP_06507872.1| hypothetical protein TBDG_00382 ... 189 1e-46 gi|41406140|ref|NP_958976.1| hypothetical protein MAP0042 [Mycob... 168 2e-40 gi|254773094|ref|ZP_05214610.1| hypothetical protein MaviaA2_002... 167 3e-40 gi|254819078|ref|ZP_05224079.1| hypothetical protein MintA_04083... 167 5e-40 gi|342860242|ref|ZP_08716894.1| hypothetical protein MCOL_15235 ... 166 1e-39 gi|296167094|ref|ZP_06849504.1| conserved hypothetical protein [... 166 1e-39 gi|240172405|ref|ZP_04751064.1| hypothetical protein MkanA1_2402... 148 3e-34 gi|183980084|ref|YP_001848375.1| hypothetical protein MMAR_0049 ... 145 2e-33 gi|333988686|ref|YP_004521300.1| hypothetical protein JDM601_004... 142 2e-32 gi|118615962|ref|YP_904294.1| hypothetical protein MUL_0048 [Myc... 136 1e-30 gi|334321979|ref|XP_001366833.2| PREDICTED: e3 ubiquitin-protein... 39.7 0.13 gi|20092160|ref|NP_618235.1| sensory transduction histidine kina... 38.5 0.35 gi|296164010|ref|ZP_06846634.1| conserved hypothetical protein [... 37.7 0.55 gi|21623856|dbj|BAC00994.1| skeletrophin gamma [Homo sapiens] 37.7 0.63 gi|119576580|gb|EAW56176.1| mindbomb homolog 2 (Drosophila), iso... 37.7 0.63 gi|282394032|ref|NP_001164157.1| E3 ubiquitin-protein ligase MIB... 37.4 0.65 gi|344253833|gb|EGW09937.1| E3 ubiquitin-protein ligase MIB2 [Cr... 37.4 0.70 gi|49146161|ref|YP_025599.1| hypothetical protein MUP077c [Mycob... 34.7 4.3 gi|172058467|ref|YP_001814927.1| flagellar hook-associated prote... 34.7 5.0 gi|254293390|ref|YP_003059413.1| peptidase U62 modulator of DNA ... 34.7 5.3 gi|298208828|ref|YP_003717007.1| hypothetical protein CA2559_113... 34.3 6.6 gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine ki... 33.9 7.7 >gi|148821221|ref|YP_001285975.1| hypothetical protein TBFG_10030 [Mycobacterium tuberculosis F11] gi|253796946|ref|YP_003029947.1| transposase [Mycobacterium tuberculosis KZN 1435] gi|254548963|ref|ZP_05139410.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 11 more sequence titlesLength=191 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%) Query 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD Sbjct 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 Query 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ Sbjct 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 >gi|15607172|ref|NP_214544.1| hypothetical protein Rv0030 [Mycobacterium tuberculosis H37Rv] gi|15839406|ref|NP_334443.1| hypothetical protein MT0034 [Mycobacterium tuberculosis CDC1551] gi|31791207|ref|NP_853700.1| hypothetical protein Mb0031 [Mycobacterium bovis AF2122/97] 64 more sequence titles Length=109 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%) Query 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD Sbjct 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 Query 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ Sbjct 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 >gi|289748494|ref|ZP_06507872.1| hypothetical protein TBDG_00382 [Mycobacterium tuberculosis T92] gi|289689081|gb|EFD56510.1| hypothetical protein TBDG_00382 [Mycobacterium tuberculosis T92] Length=96 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%) Query 14 LSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVM 73 +SDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVM Sbjct 1 MSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVM 60 Query 74 TGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 TGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ Sbjct 61 TGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 96 >gi|41406140|ref|NP_958976.1| hypothetical protein MAP0042 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466858|ref|YP_879349.1| hypothetical protein MAV_0049 [Mycobacterium avium 104] gi|41394488|gb|AAS02359.1| hypothetical protein MAP_0042 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118168145|gb|ABK69042.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336459443|gb|EGO38385.1| Protein of unknown function (DUF2710) [Mycobacterium avium subsp. paratuberculosis S397] Length=107 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/108 (81%), Positives = 94/108 (88%), Gaps = 3/108 (2%) Query 2 VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG 61 VS S SR+ LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AVANSDG Sbjct 3 VSDSGSRA---NLSDKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIYAVANSDG 59 Query 62 RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 RLL+LTLHPGVMTGY HGELADR+NLAITALR+E EAENRA YGG L Sbjct 60 RLLKLTLHPGVMTGYGHGELADRLNLAITALREEAEAENRASYGGPLH 107 >gi|254773094|ref|ZP_05214610.1| hypothetical protein MaviaA2_00211 [Mycobacterium avium subsp. avium ATCC 25291] Length=105 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/105 (82%), Positives = 93/105 (89%), Gaps = 1/105 (0%) Query 5 SDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLL 64 SDS S + LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AVANSDGRLL Sbjct 2 SDSGSR-ANLSDKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIYAVANSDGRLL 60 Query 65 ELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 +LTLHPGVMTGY HGELADR+NLAITALR+E EAENRA YGG L Sbjct 61 KLTLHPGVMTGYGHGELADRLNLAITALREEAEAENRASYGGPLH 105 >gi|254819078|ref|ZP_05224079.1| hypothetical protein MintA_04083 [Mycobacterium intracellulare ATCC 13950] Length=105 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 86/108 (80%), Positives = 94/108 (88%), Gaps = 3/108 (2%) Query 2 VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG 61 +SGS SR+ LSD+D VESVLR+LSEAADKWEALV QAE VTYSVDLGDV AVANSDG Sbjct 1 MSGSGSRA---NLSDKDRVESVLRELSEAADKWEALVAQAEAVTYSVDLGDVYAVANSDG 57 Query 62 RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 RL++LTLHPGVMTGY HGELADR+NLAITALR+E EAENRA YGG L Sbjct 58 RLIKLTLHPGVMTGYGHGELADRLNLAITALREEAEAENRASYGGPLH 105 >gi|342860242|ref|ZP_08716894.1| hypothetical protein MCOL_15235 [Mycobacterium colombiense CECT 3035] gi|342132620|gb|EGT85849.1| hypothetical protein MCOL_15235 [Mycobacterium colombiense CECT 3035] Length=106 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/109 (78%), Positives = 94/109 (87%), Gaps = 3/109 (2%) Query 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 MV+ S SR+ LS++DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AVANSD Sbjct 1 MVADSGSRA---NLSEKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIHAVANSD 57 Query 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GRLL+LTLHPGVMTGY HGELA+R+NLAITALR+E EAENR YGG L Sbjct 58 GRLLKLTLHPGVMTGYGHGELAERLNLAITALREEAEAENRVSYGGPLH 106 >gi|296167094|ref|ZP_06849504.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897536|gb|EFG77132.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=123 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/108 (80%), Positives = 94/108 (88%), Gaps = 1/108 (0%) Query 2 VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG 61 VS SDS + LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGD+ AV NSDG Sbjct 17 VSVSDSGGR-ANLSDKDLVESVLRELSEAADKWEALVAQAEAVTYSVDLGDIYAVTNSDG 75 Query 62 RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 RLLELTLHPGVM+GYAHGELADR+NLAI+ALR+E EAENRA YGG L Sbjct 76 RLLELTLHPGVMSGYAHGELADRLNLAISALREEAEAENRASYGGPLH 123 >gi|240172405|ref|ZP_04751064.1| hypothetical protein MkanA1_24023 [Mycobacterium kansasii ATCC 12478] Length=106 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/109 (78%), Positives = 95/109 (88%), Gaps = 3/109 (2%) Query 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 MV GS R+E LSD+DLVESVLR+LSEAADKWEALV QAETVTYSVDLGD+ A+ANSD Sbjct 1 MVPGSGDRAE---LSDKDLVESVLRELSEAADKWEALVAQAETVTYSVDLGDIHAIANSD 57 Query 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GRLL+L LHPGVMTGY+HGELADR+N AI ALR+E EAEN+ARYGG L Sbjct 58 GRLLKLRLHPGVMTGYSHGELADRLNAAIAALREEAEAENQARYGGSLH 106 >gi|183980084|ref|YP_001848375.1| hypothetical protein MMAR_0049 [Mycobacterium marinum M] gi|183173410|gb|ACC38520.1| conserved hypothetical protein [Mycobacterium marinum M] Length=106 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/109 (80%), Positives = 95/109 (88%), Gaps = 3/109 (2%) Query 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 MVSG R+E LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLGDV AVANSD Sbjct 1 MVSGPGGRAE---LSDKDLVESVLRELSEAADKWEALVAQAENVTYSVDLGDVHAVANSD 57 Query 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GRLL+LTLHPGVMTGY+HGELADR+N+A+ ALR E EAEN ARYGG LQ Sbjct 58 GRLLKLTLHPGVMTGYSHGELADRLNVALAALRAEAEAENEARYGGPLQ 106 >gi|333988686|ref|YP_004521300.1| hypothetical protein JDM601_0046 [Mycobacterium sp. JDM601] gi|333484654|gb|AEF34046.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=105 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/105 (69%), Positives = 87/105 (83%), Gaps = 3/105 (2%) Query 2 VSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDG 61 +SG DSR+E LSD+DLVESVLRDL EAA+KWEALV +AE TYSVDLGDVRAVANSDG Sbjct 1 MSGPDSRAE---LSDKDLVESVLRDLREAAEKWEALVAEAENTTYSVDLGDVRAVANSDG 57 Query 62 RLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGG 106 RLLELTLHP V++ Y + EL++R+N+ TALR+E E++ ARYG Sbjct 58 RLLELTLHPCVVSDYTYSELSERLNVVFTALREEAESDFEARYGS 102 >gi|118615962|ref|YP_904294.1| hypothetical protein MUL_0048 [Mycobacterium ulcerans Agy99] gi|118568072|gb|ABL02823.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=106 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/109 (78%), Positives = 93/109 (86%), Gaps = 3/109 (2%) Query 1 MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSD 60 MVS R+E LSD+DLVESVLR+LSEAADKWEALV QAE VTYSVDLG V AVANSD Sbjct 1 MVSRPGGRAE---LSDKDLVESVLRELSEAADKWEALVAQAENVTYSVDLGCVHAVANSD 57 Query 61 GRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GRLL+LTLHPGVMTGY+H ELADR+N+A+ ALR+E EAEN ARYGG LQ Sbjct 58 GRLLKLTLHPGVMTGYSHAELADRLNVALAALREEAEAENEARYGGPLQ 106 >gi|334321979|ref|XP_001366833.2| PREDICTED: e3 ubiquitin-protein ligase MIB2 [Monodelphis domestica] Length=903 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/90 (32%), Positives = 39/90 (44%), Gaps = 10/90 (11%) Query 5 SDSRSEPSQLSDRD---LVESVLRDLSEAADKWEA----LVTQAETVTYSVDLGDVRAVA 57 + + S P Q D+ L +LR++ E W + Q TV D GDVR Sbjct 250 ASAESPPFQHGDKVKCLLAMDILREMQEGHGGWNPKMAEFIGQTGTVHRITDRGDVRVQF 309 Query 58 NSDGRLLELTLHPGVMTGYAHGELADRVNL 87 NSD R T HPG +T + + D V + Sbjct 310 NSDAR---WTFHPGALTKHNTFWVGDMVRV 336 >gi|20092160|ref|NP_618235.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917385|gb|AAM06715.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length=673 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 29/91 (32%), Positives = 41/91 (46%), Gaps = 14/91 (15%) Query 14 LSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELT------ 67 ++DRD V+ LR E K+ + Q E + Y D N DG + E+T Sbjct 174 ITDRDEVQRTLR---EKGKKYRFITEQTEMIIYEFDFES--NTGNLDGAVEEVTGYSVKD 228 Query 68 ---LHPGVMTGYAHGELADRVNLAITALRDE 95 + P V GY H E D+VN IT ++ E Sbjct 229 FQSIPPHVWMGYLHPEELDQVNENITKIQKE 259 >gi|296164010|ref|ZP_06846634.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900634|gb|EFG80016.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=128 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/59 (38%), Positives = 30/59 (51%), Gaps = 0/59 (0%) Query 51 GDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ 109 GDV NS G+L L+L G T Y+HG LA+ +N I + E + GG+ Q Sbjct 49 GDVVLSVNSQGQLTSLSLAQGCTTRYSHGALAELINTTIDEAVNAAAEETASVGGGQDQ 107 >gi|21623856|dbj|BAC00994.1| skeletrophin gamma [Homo sapiens] Length=1009 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 6/71 (8%) Query 9 SEPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLE 65 S+P Q D+ L VLR++ E W + + TV D GDVR N + R Sbjct 312 SQPFQHGDKVKCLLDTDVLREMQEGHGGWNPRMAETGTVHRITDRGDVRVQFNHETR--- 368 Query 66 LTLHPGVMTGY 76 T HPG +T + Sbjct 369 WTFHPGALTKH 379 >gi|119576580|gb|EAW56176.1| mindbomb homolog 2 (Drosophila), isoform CRA_c [Homo sapiens] Length=932 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 6/71 (8%) Query 9 SEPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLE 65 S+P Q D+ L VLR++ E W + + TV D GDVR N + R Sbjct 312 SQPFQHGDKVKCLLDTDVLREMQEGHGGWNPRMAETGTVHRITDRGDVRVQFNHETR--- 368 Query 66 LTLHPGVMTGY 76 T HPG +T + Sbjct 369 WTFHPGALTKH 379 >gi|282394032|ref|NP_001164157.1| E3 ubiquitin-protein ligase MIB2 isoform 2 [Homo sapiens] Length=1066 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 6/71 (8%) Query 9 SEPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLE 65 S+P Q D+ L VLR++ E W + + TV D GDVR N + R Sbjct 369 SQPFQHGDKVKCLLDTDVLREMQEGHGGWNPRMAETGTVHRITDRGDVRVQFNHETR--- 425 Query 66 LTLHPGVMTGY 76 T HPG +T + Sbjct 426 WTFHPGALTKH 436 >gi|344253833|gb|EGW09937.1| E3 ubiquitin-protein ligase MIB2 [Cricetulus griseus] Length=978 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/70 (35%), Positives = 32/70 (46%), Gaps = 6/70 (8%) Query 10 EPSQLSDRD---LVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLEL 66 +P Q D+ L VLRD+ E W + + TV D GDVR N + R Sbjct 255 QPFQRGDKVKCLLDTDVLRDMQEGHGGWNPRMAEMGTVHRITDRGDVRVQFNHETR---W 311 Query 67 TLHPGVMTGY 76 T HPG +T + Sbjct 312 TFHPGALTKH 321 >gi|49146161|ref|YP_025599.1| hypothetical protein MUP077c [Mycobacterium ulcerans Agy99] gi|42414795|emb|CAE46888.1| conserved hypothetical [Mycobacterium ulcerans Agy99] Length=130 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 10/98 (10%) Query 11 PSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDL------GDVRAVANSDGRLL 64 P +D+DL SV+ L + ++ + + +D+ GDV N+ G+L Sbjct 7 PRYQADKDLTASVVTRLERVSSMLSKVLEEID----GIDVEAIGGDGDVVLSVNAHGQLT 62 Query 65 ELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRA 102 L+L G T Y HG LA+ +N + + AE A Sbjct 63 SLSLAQGCTTRYTHGGLAELINTTLGEAVNAAAAETSA 100 >gi|172058467|ref|YP_001814927.1| flagellar hook-associated protein 3 [Exiguobacterium sibiricum 255-15] gi|171990988|gb|ACB61910.1| flagellar hook-associated protein 3 [Exiguobacterium sibiricum 255-15] Length=320 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 27/84 (33%), Positives = 41/84 (49%), Gaps = 12/84 (14%) Query 18 DLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMT--- 74 DL +S L +++ A + L TQA T TY D +A+ + G+L+E H G M Sbjct 74 DLTDSALNEVTSAMSRVRELTTQAATDTY--DATQRKAIQSEVGQLIE---HIGTMANTK 128 Query 75 ----GYAHGELADRVNLAITALRD 94 G +G D+ ++I LRD Sbjct 129 YNEKGIFNGTATDKPFVSIEGLRD 152 >gi|254293390|ref|YP_003059413.1| peptidase U62 modulator of DNA gyrase [Hirschia baltica ATCC 49814] gi|254041921|gb|ACT58716.1| peptidase U62 modulator of DNA gyrase [Hirschia baltica ATCC 49814] Length=464 Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/67 (32%), Positives = 32/67 (48%), Gaps = 0/67 (0%) Query 12 SQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPG 71 S+L DR +L D AD E V A + ++ D G +++ A G+ L + G Sbjct 2 SELYDRSAASKILDDALHGADDGELYVETARSESFVFDDGRLKSAAFDTGKGFGLRVVSG 61 Query 72 VMTGYAH 78 TG+AH Sbjct 62 ETTGFAH 68 >gi|298208828|ref|YP_003717007.1| hypothetical protein CA2559_11328 [Croceibacter atlanticus HTCC2559] gi|83848755|gb|EAP86624.1| hypothetical protein CA2559_11328 [Croceibacter atlanticus HTCC2559] Length=825 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 19/52 (37%), Positives = 28/52 (54%), Gaps = 4/52 (7%) Query 44 VTYSVDLGDVRAVANSDGRLLELTLH----PGVMTGYAHGELADRVNLAITA 91 V Y+VD DVRA+ + +LLE L +T Y + +L DR+NL + Sbjct 772 VYYTVDQSDVRALVRGELKLLERQLKSARSSNTLTKYHYDDLEDRINLILNP 823 >gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM 4136] Length=957 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (51%), Gaps = 1/75 (1%) Query 17 RDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDV-RAVANSDGRLLELTLHPGVMTG 75 R +V++V+RD+SE EAL T + S + + A+ +DGR L++ M G Sbjct 425 RTIVQAVVRDISERKRAEEALRTSEARFSSSFESAAIGMALVGTDGRFLKVNAALCAMLG 484 Query 76 YAHGELADRVNLAIT 90 Y EL ++ IT Sbjct 485 YTPEELMEKTFQEIT 499 Lambda K H 0.312 0.128 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129509500864 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40