BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0039c

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607181|ref|NP_214553.1|  transmembrane protein [Mycobacteriu...   220    6e-56
gi|31791216|ref|NP_853709.1|  transmembrane protein [Mycobacteriu...   217    6e-55
gi|254233439|ref|ZP_04926765.1|  hypothetical protein TBCG_00038 ...   207    4e-52
gi|289748504|ref|ZP_06507882.1|  conserved membrane protein [Myco...   174    3e-42
gi|254819074|ref|ZP_05224075.1|  hypothetical protein MintA_04063...   153    1e-35
gi|240168765|ref|ZP_04747424.1|  putative transmembrane protein [...   152    1e-35
gi|41406144|ref|NP_958980.1|  hypothetical protein MAP0046c [Myco...   144    3e-33
gi|183980090|ref|YP_001848381.1|  hypothetical protein MMAR_0055 ...   143    8e-33
gi|118615968|ref|YP_904300.1|  hypothetical protein MUL_0054 [Myc...   141    3e-32
gi|15826891|ref|NP_301154.1|  hypothetical protein ML0030 [Mycoba...   136    1e-30
gi|296167090|ref|ZP_06849500.1|  transmembrane protein [Mycobacte...   117    4e-25
gi|342860238|ref|ZP_08716890.1|  hypothetical protein MCOL_15215 ...   107    8e-22
gi|333992965|ref|YP_004525579.1|  transmembrane protein [Mycobact...  84.7    4e-15
gi|118473301|ref|YP_891115.1|  hypothetical protein MSMEG_6920 [M...  78.2    4e-13
gi|108802350|ref|YP_642547.1|  hypothetical protein Mmcs_5391 [My...  77.8    5e-13
gi|308394020|ref|ZP_07669320.1|  hypothetical protein TMLG_00771 ...  75.1    4e-12
gi|120406985|ref|YP_956814.1|  hypothetical protein Mvan_6056 [My...  58.9    3e-07
gi|145221445|ref|YP_001132123.1|  hypothetical protein Mflv_0851 ...  53.1    1e-05
gi|315446803|ref|YP_004079682.1|  hypothetical protein Mspyr1_532...  51.6    4e-05
gi|317055193|ref|YP_004103660.1|  hypothetical protein Rumal_0473...  35.0    3.8  


>gi|15607181|ref|NP_214553.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15839416|ref|NP_334453.1| hypothetical protein MT0044 [Mycobacterium tuberculosis CDC1551]
 gi|148659799|ref|YP_001281322.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
 42 more sequence titles
 Length=115

 Score =  220 bits (560),  Expect = 6e-56, Method: Compositional matrix adjust.
 Identities = 115/115 (100%), Positives = 115/115 (100%), Gaps = 0/115 (0%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA
Sbjct  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
            PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115


>gi|31791216|ref|NP_853709.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121635949|ref|YP_976172.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224988422|ref|YP_002643089.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 27 more sequence titles
 Length=115

 Score =  217 bits (552),  Expect = 6e-55, Method: Compositional matrix adjust.
 Identities = 114/115 (99%), Positives = 114/115 (99%), Gaps = 0/115 (0%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            MFLAGVLCMCAAAASALFGSWSL HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA
Sbjct  1    MFLAGVLCMCAAAASALFGSWSLFHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
            PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115


>gi|254233439|ref|ZP_04926765.1| hypothetical protein TBCG_00038 [Mycobacterium tuberculosis C]
 gi|124603232|gb|EAY61507.1| hypothetical protein TBCG_00038 [Mycobacterium tuberculosis C]
Length=109

 Score =  207 bits (527),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  7    LCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTAL  66
            +CMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTAL
Sbjct  1    MCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTAL  60

Query  67   MVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
            MVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct  61   MVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  109


>gi|289748504|ref|ZP_06507882.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289689091|gb|EFD56520.1| conserved membrane protein [Mycobacterium tuberculosis T92]
Length=93

 Score =  174 bits (442),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%)

Query  25   HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGS  84
            HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGS
Sbjct  3    HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGS  62

Query  85   WQSAQYALRRETASPTANCVGSCAVCTQACH  115
            WQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct  63   WQSAQYALRRETASPTANCVGSCAVCTQACH  93


>gi|254819074|ref|ZP_05224075.1| hypothetical protein MintA_04063 [Mycobacterium intracellulare 
ATCC 13950]
Length=113

 Score =  153 bits (386),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 84/115 (74%), Positives = 96/115 (84%), Gaps = 2/115 (1%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLCMCAA ASA FG+WSL H      TALALRAMAPTQLAAAVML AGGVVA+AA
Sbjct  1    MLIAGVLCMCAAVASAGFGTWSLAHNRNFGATALALRAMAPTQLAAAVMLGAGGVVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
              HTAL+V+IVC+AGA+GTLAAGSWQSA++ALR+E A+P   C GSCA CTQ+CH
Sbjct  61   VPHTALVVLIVCVAGALGTLAAGSWQSARFALRQEAAAPA--CAGSCAGCTQSCH  113


>gi|240168765|ref|ZP_04747424.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=116

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 83/116 (72%), Positives = 95/116 (82%), Gaps = 1/116 (0%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLC+CAA ASA+FG WSL HT TADPT LALRAMAPTQLAAAVML AGGVVA+ A
Sbjct  1    MLIAGVLCVCAAVASAVFGVWSLFHTRTADPTELALRAMAPTQLAAAVMLTAGGVVALVA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASP-TANCVGSCAVCTQACH  115
               TAL+V++VCIAGA GTLA GSWQSA+YALRR  A+P +A+C G CA CT +C 
Sbjct  61   AAPTALVVMVVCIAGAFGTLATGSWQSARYALRRGAATPKSADCGGDCAACTLSCR  116


>gi|41406144|ref|NP_958980.1| hypothetical protein MAP0046c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118462500|ref|YP_879353.1| hypothetical protein MAV_0053 [Mycobacterium avium 104]
 gi|254773098|ref|ZP_05214614.1| hypothetical protein MaviaA2_00231 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41394492|gb|AAS02363.1| hypothetical protein MAP_0046c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118163787|gb|ABK64684.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336459439|gb|EGO38381.1| hypothetical protein MAPs_03790 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=113

 Score =  144 bits (364),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 79/114 (70%), Positives = 95/114 (84%), Gaps = 2/114 (1%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLC+CAA ASA FG+WSL H      TALALRAMAPTQLAAAVMLAAGG VA+AA
Sbjct  1    MLIAGVLCICAAVASAGFGTWSLAHNRNYGATALALRAMAPTQLAAAVMLAAGGTVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQAC  114
              HTAL+V+IVC+AGA+GTLAAGSWQSA++A+R+++A+P   C GSC  CTQ+C
Sbjct  61   VPHTALVVLIVCVAGALGTLAAGSWQSARFAVRQQSAAPA--CAGSCTGCTQSC  112


>gi|183980090|ref|YP_001848381.1| hypothetical protein MMAR_0055 [Mycobacterium marinum M]
 gi|183173416|gb|ACC38526.1| conserved hypothetical transmembrane protein [Mycobacterium marinum 
M]
Length=116

 Score =  143 bits (361),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 83/116 (72%), Positives = 96/116 (83%), Gaps = 1/116 (0%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLCMCAAAASALFG+WSL      D T LALRAMAPTQLAAAVML+AGGVVA+AA
Sbjct  1    MMIAGVLCMCAAAASALFGAWSLARADVTDSTQLALRAMAPTQLAAAVMLSAGGVVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRR-ETASPTANCVGSCAVCTQACH  115
              HTAL+V+IVC+AGA+GTLAAGSWQSA++AL R +T    A+C GSCA CT +CH
Sbjct  61   SPHTALVVLIVCVAGALGTLAAGSWQSARFALSRVDTIPDEASCSGSCAGCTLSCH  116


>gi|118615968|ref|YP_904300.1| hypothetical protein MUL_0054 [Mycobacterium ulcerans Agy99]
 gi|118568078|gb|ABL02829.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans 
Agy99]
Length=116

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 82/116 (71%), Positives = 96/116 (83%), Gaps = 1/116 (0%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLCMCAAAASALFG+WSL      D T LALRAMAPTQLAAAVML+AGGVVA+AA
Sbjct  1    MMIAGVLCMCAAAASALFGAWSLARADVTDSTQLALRAMAPTQLAAAVMLSAGGVVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRR-ETASPTANCVGSCAVCTQACH  115
              +TAL+V+IVC+AGA+GTLAAGSWQSA++AL R +T    A+C GSCA CT +CH
Sbjct  61   SPYTALVVLIVCVAGALGTLAAGSWQSARFALSRVDTIPDEASCSGSCAGCTLSCH  116


>gi|15826891|ref|NP_301154.1| hypothetical protein ML0030 [Mycobacterium leprae TN]
 gi|221229369|ref|YP_002502785.1| hypothetical protein MLBr_00030 [Mycobacterium leprae Br4923]
 gi|13431980|sp|O32871.1|Y030_MYCLE RecName: Full=Uncharacterized protein ML0030
 gi|2344828|emb|CAA94725.1| hypothetical protein [Mycobacterium leprae]
 gi|13092438|emb|CAC29538.1| putative membrane protein [Mycobacterium leprae]
 gi|219932476|emb|CAR70123.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=113

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 72/115 (63%), Positives = 87/115 (76%), Gaps = 2/115 (1%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AG LC+CAA  SA+FG+W+L H  T DPT LA+RAMAP QLAAA+MLAAGGVVA+ A
Sbjct  1    MLIAGTLCVCAAVISAVFGTWALIHNQTVDPTQLAMRAMAPPQLAAAIMLAAGGVVALVA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
              HTAL+VV VC+ GAVGTLAAGSWQSA+Y LRR   +   +C  +CA C  +C 
Sbjct  61   VAHTALIVVAVCVTGAVGTLAAGSWQSARYTLRRR--ATATSCGKNCAGCILSCR  113


>gi|296167090|ref|ZP_06849500.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897532|gb|EFG77128.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=113

 Score =  117 bits (294),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 79/115 (69%), Positives = 98/115 (86%), Gaps = 2/115 (1%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLCMCAA ASA FG+WSL  T   +PTALALR++AP QLAAA+MLAAGGVVA+AA
Sbjct  1    MLIAGVLCMCAAVASAGFGTWSLARTQNGEPTALALRSVAPAQLAAAIMLAAGGVVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
            P HTAL+V++VC+AGA+GTLAAGSWQSA++AL++E A+    C G+CA CTQ+CH
Sbjct  61   PPHTALVVLLVCVAGAIGTLAAGSWQSARFALQQEAAA--PACAGACAGCTQSCH  113


>gi|342860238|ref|ZP_08716890.1| hypothetical protein MCOL_15215 [Mycobacterium colombiense CECT 
3035]
 gi|342132616|gb|EGT85845.1| hypothetical protein MCOL_15215 [Mycobacterium colombiense CECT 
3035]
Length=113

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 77/114 (68%), Positives = 92/114 (81%), Gaps = 2/114 (1%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M +AGVLCMCAA ASA FG+WSL H      TALALRAMAPTQLAAAVMLAAGG VA+AA
Sbjct  1    MLIAGVLCMCAAVASAGFGTWSLAHNRNFGATALALRAMAPTQLAAAVMLAAGGAVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQAC  114
               TAL+V++VC+ GA+GTLAAGS+QSA+ A+R++ A+P   C GSCA CTQ+C
Sbjct  61   VPDTALVVLVVCVVGALGTLAAGSYQSARIAVRQQAAAPA--CAGSCAGCTQSC  112


>gi|333992965|ref|YP_004525579.1| transmembrane protein [Mycobacterium sp. JDM601]
 gi|333488933|gb|AEF38325.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=148

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 45/94 (48%), Positives = 61/94 (65%), Gaps = 0/94 (0%)

Query  1   MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
           M + GVLC+ AA  S +FG  +L    T DP  L LRA+AP Q+A  V+LA GG + +A 
Sbjct  1   MLIMGVLCLVAAVVSLVFGVRTLARPLTGDPEQLVLRAVAPAQVAVGVILAVGGALVLAG  60

Query  61  PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRR  94
           P   AL+ +I+ I GA+  LAAG+WQ A+YA R+
Sbjct  61  PPAVALLALIISITGALVILAAGAWQGARYAARQ  94


>gi|118473301|ref|YP_891115.1| hypothetical protein MSMEG_6920 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118174588|gb|ABK75484.1| hypothetical protein MSMEG_6920 [Mycobacterium smegmatis str. 
MC2 155]
Length=122

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 52/89 (59%), Positives = 62/89 (70%), Gaps = 0/89 (0%)

Query  1   MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
           M +A +LC+ AA   A+ G W L      DP    LRA+APTQLAAAVMLAAGGV A+AA
Sbjct  1   MLIAALLCLSAAVVVAVLGLWLLTRPHYGDPVRGVLRAVAPTQLAAAVMLAAGGVTALAA  60

Query  61  PGHTALMVVIVCIAGAVGTLAAGSWQSAQ  89
              T LMVV+VC+ GAV T+AAG WQSA+
Sbjct  61  APQTGLMVVVVCVIGAVATVAAGCWQSAK  89


>gi|108802350|ref|YP_642547.1| hypothetical protein Mmcs_5391 [Mycobacterium sp. MCS]
 gi|119871503|ref|YP_941455.1| hypothetical protein Mkms_5480 [Mycobacterium sp. KMS]
 gi|126438330|ref|YP_001074021.1| hypothetical protein Mjls_5767 [Mycobacterium sp. JLS]
 gi|108772769|gb|ABG11491.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119697592|gb|ABL94665.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126238130|gb|ABO01531.1| hypothetical protein Mjls_5767 [Mycobacterium sp. JLS]
Length=119

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 64/119 (54%), Positives = 75/119 (64%), Gaps = 4/119 (3%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA  60
            M    VLC+CAA A A  G W L    +ADP    LRA+APTQLAA+VMLAAGGVVA+AA
Sbjct  1    MVFVAVLCLCAAVAVAGLGLWLLTRPRSADPRQQILRAVAPTQLAASVMLAAGGVVALAA  60

Query  61   PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRE----TASPTANCVGSCAVCTQACH  115
            P  T ++ VI C  GAV T+AAG WQSA+   R E     A   A+C GSCA C  +C 
Sbjct  61   PPETGVLAVIACGVGAVATVAAGCWQSAKVVARTEAAQAAAGADADCAGSCASCVLSCR  119


>gi|308394020|ref|ZP_07669320.1| hypothetical protein TMLG_00771 [Mycobacterium tuberculosis SUMu012]
 gi|308367789|gb|EFP56640.1| hypothetical protein TMLG_00771 [Mycobacterium tuberculosis SUMu012]
Length=36

 Score = 75.1 bits (183),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 35/36 (98%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  80   LAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  115
            +AAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct  1    MAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH  36


>gi|120406985|ref|YP_956814.1| hypothetical protein Mvan_6056 [Mycobacterium vanbaalenii PYR-1]
 gi|119959803|gb|ABM16808.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=123

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 55/75 (74%), Gaps = 0/75 (0%)

Query  21  WSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTL  80
           WSL   P+ D     LRA+APTQLAAAVMLAAG VVA++A    ++++++VC+AGA GT+
Sbjct  21  WSLMRRPSTDYVQQVLRAVAPTQLAAAVMLAAGAVVALSATAPMSVVILVVCVAGATGTV  80

Query  81  AAGSWQSAQYALRRE  95
           AAG WQ+AQ   RR 
Sbjct  81  AAGCWQAAQAVGRRN  95


>gi|145221445|ref|YP_001132123.1| hypothetical protein Mflv_0851 [Mycobacterium gilvum PYR-GCK]
 gi|145213931|gb|ABP43335.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=125

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 57/122 (47%), Positives = 81/122 (67%), Gaps = 9/122 (7%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAV--  58
            M +A ++ +CAAAA+A  G+WSL   P+ D     LRA+APTQLAAAVMLAAGG++A+  
Sbjct  3    MLVAALVTLCAAAATAAVGTWSLLRRPSTDFVQQVLRAVAPTQLAAAVMLAAGGLLALAV  62

Query  59   -AAPGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVG-----SCAVCTQ  112
             +  G  A ++++VC+ GAV T+AAG WQ+A+  + RE A  TA+  G     +C  CT 
Sbjct  63   GSRQGAPAAVILLVCVVGAVATVAAGCWQAAKM-VTRENARQTASSGGCGSESACGSCTL  121

Query  113  AC  114
            +C
Sbjct  122  SC  123


>gi|315446803|ref|YP_004079682.1| hypothetical protein Mspyr1_53230 [Mycobacterium sp. Spyr1]
 gi|315265106|gb|ADU01848.1| hypothetical protein Mspyr1_53230 [Mycobacterium sp. Spyr1]
Length=123

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 56/122 (46%), Positives = 80/122 (66%), Gaps = 9/122 (7%)

Query  1    MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAV--  58
            M +A ++ +CAAAA+A  G+WSL   P+ D     LRA+APTQLAAAVMLAAGG++A+  
Sbjct  1    MLVAALVTLCAAAATAAVGTWSLLRRPSTDFVQQVLRAVAPTQLAAAVMLAAGGLLALAV  60

Query  59   -AAPGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVG-----SCAVCTQ  112
             +  G  A ++++VC+ GAV T+AAG WQ+A+  + RE A   A+  G     +C  CT 
Sbjct  61   GSRQGPPAAVILLVCVVGAVATVAAGCWQAAKM-VTRENARKAASSGGCGSESACGSCTL  119

Query  113  AC  114
            +C
Sbjct  120  SC  121


>gi|317055193|ref|YP_004103660.1| hypothetical protein Rumal_0473 [Ruminococcus albus 7]
 gi|315447462|gb|ADU21026.1| hypothetical protein Rumal_0473 [Ruminococcus albus 7]
Length=160

 Score = 35.0 bits (79),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%), Gaps = 0/25 (0%)

Query  64   TALMVVIVCIAGAVGTLAAGSWQSA  88
            +A+++++ CIA A+GTLAAGSWQ A
Sbjct  101  SAVILILFCIACAIGTLAAGSWQGA  125



Lambda     K      H
   0.325    0.127    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131043835296




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40