BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0039c
Length=115
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607181|ref|NP_214553.1| transmembrane protein [Mycobacteriu... 220 6e-56
gi|31791216|ref|NP_853709.1| transmembrane protein [Mycobacteriu... 217 6e-55
gi|254233439|ref|ZP_04926765.1| hypothetical protein TBCG_00038 ... 207 4e-52
gi|289748504|ref|ZP_06507882.1| conserved membrane protein [Myco... 174 3e-42
gi|254819074|ref|ZP_05224075.1| hypothetical protein MintA_04063... 153 1e-35
gi|240168765|ref|ZP_04747424.1| putative transmembrane protein [... 152 1e-35
gi|41406144|ref|NP_958980.1| hypothetical protein MAP0046c [Myco... 144 3e-33
gi|183980090|ref|YP_001848381.1| hypothetical protein MMAR_0055 ... 143 8e-33
gi|118615968|ref|YP_904300.1| hypothetical protein MUL_0054 [Myc... 141 3e-32
gi|15826891|ref|NP_301154.1| hypothetical protein ML0030 [Mycoba... 136 1e-30
gi|296167090|ref|ZP_06849500.1| transmembrane protein [Mycobacte... 117 4e-25
gi|342860238|ref|ZP_08716890.1| hypothetical protein MCOL_15215 ... 107 8e-22
gi|333992965|ref|YP_004525579.1| transmembrane protein [Mycobact... 84.7 4e-15
gi|118473301|ref|YP_891115.1| hypothetical protein MSMEG_6920 [M... 78.2 4e-13
gi|108802350|ref|YP_642547.1| hypothetical protein Mmcs_5391 [My... 77.8 5e-13
gi|308394020|ref|ZP_07669320.1| hypothetical protein TMLG_00771 ... 75.1 4e-12
gi|120406985|ref|YP_956814.1| hypothetical protein Mvan_6056 [My... 58.9 3e-07
gi|145221445|ref|YP_001132123.1| hypothetical protein Mflv_0851 ... 53.1 1e-05
gi|315446803|ref|YP_004079682.1| hypothetical protein Mspyr1_532... 51.6 4e-05
gi|317055193|ref|YP_004103660.1| hypothetical protein Rumal_0473... 35.0 3.8
>gi|15607181|ref|NP_214553.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15839416|ref|NP_334453.1| hypothetical protein MT0044 [Mycobacterium tuberculosis CDC1551]
gi|148659799|ref|YP_001281322.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
42 more sequence titles
Length=115
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/115 (100%), Positives = 115/115 (100%), Gaps = 0/115 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA
Sbjct 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
>gi|31791216|ref|NP_853709.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121635949|ref|YP_976172.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224988422|ref|YP_002643089.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
27 more sequence titles
Length=115
Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/115 (99%), Positives = 114/115 (99%), Gaps = 0/115 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
MFLAGVLCMCAAAASALFGSWSL HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA
Sbjct 1 MFLAGVLCMCAAAASALFGSWSLFHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
>gi|254233439|ref|ZP_04926765.1| hypothetical protein TBCG_00038 [Mycobacterium tuberculosis C]
gi|124603232|gb|EAY61507.1| hypothetical protein TBCG_00038 [Mycobacterium tuberculosis C]
Length=109
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 7 LCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTAL 66
+CMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTAL
Sbjct 1 MCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTAL 60
Query 67 MVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
MVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct 61 MVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 109
>gi|289748504|ref|ZP_06507882.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289689091|gb|EFD56520.1| conserved membrane protein [Mycobacterium tuberculosis T92]
Length=93
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%)
Query 25 HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGS 84
HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGS
Sbjct 3 HTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGS 62
Query 85 WQSAQYALRRETASPTANCVGSCAVCTQACH 115
WQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct 63 WQSAQYALRRETASPTANCVGSCAVCTQACH 93
>gi|254819074|ref|ZP_05224075.1| hypothetical protein MintA_04063 [Mycobacterium intracellulare
ATCC 13950]
Length=113
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/115 (74%), Positives = 96/115 (84%), Gaps = 2/115 (1%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLCMCAA ASA FG+WSL H TALALRAMAPTQLAAAVML AGGVVA+AA
Sbjct 1 MLIAGVLCMCAAVASAGFGTWSLAHNRNFGATALALRAMAPTQLAAAVMLGAGGVVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
HTAL+V+IVC+AGA+GTLAAGSWQSA++ALR+E A+P C GSCA CTQ+CH
Sbjct 61 VPHTALVVLIVCVAGALGTLAAGSWQSARFALRQEAAAPA--CAGSCAGCTQSCH 113
>gi|240168765|ref|ZP_04747424.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=116
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/116 (72%), Positives = 95/116 (82%), Gaps = 1/116 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLC+CAA ASA+FG WSL HT TADPT LALRAMAPTQLAAAVML AGGVVA+ A
Sbjct 1 MLIAGVLCVCAAVASAVFGVWSLFHTRTADPTELALRAMAPTQLAAAVMLTAGGVVALVA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASP-TANCVGSCAVCTQACH 115
TAL+V++VCIAGA GTLA GSWQSA+YALRR A+P +A+C G CA CT +C
Sbjct 61 AAPTALVVMVVCIAGAFGTLATGSWQSARYALRRGAATPKSADCGGDCAACTLSCR 116
>gi|41406144|ref|NP_958980.1| hypothetical protein MAP0046c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462500|ref|YP_879353.1| hypothetical protein MAV_0053 [Mycobacterium avium 104]
gi|254773098|ref|ZP_05214614.1| hypothetical protein MaviaA2_00231 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41394492|gb|AAS02363.1| hypothetical protein MAP_0046c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118163787|gb|ABK64684.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336459439|gb|EGO38381.1| hypothetical protein MAPs_03790 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=113
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/114 (70%), Positives = 95/114 (84%), Gaps = 2/114 (1%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLC+CAA ASA FG+WSL H TALALRAMAPTQLAAAVMLAAGG VA+AA
Sbjct 1 MLIAGVLCICAAVASAGFGTWSLAHNRNYGATALALRAMAPTQLAAAVMLAAGGTVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQAC 114
HTAL+V+IVC+AGA+GTLAAGSWQSA++A+R+++A+P C GSC CTQ+C
Sbjct 61 VPHTALVVLIVCVAGALGTLAAGSWQSARFAVRQQSAAPA--CAGSCTGCTQSC 112
>gi|183980090|ref|YP_001848381.1| hypothetical protein MMAR_0055 [Mycobacterium marinum M]
gi|183173416|gb|ACC38526.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=116
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/116 (72%), Positives = 96/116 (83%), Gaps = 1/116 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLCMCAAAASALFG+WSL D T LALRAMAPTQLAAAVML+AGGVVA+AA
Sbjct 1 MMIAGVLCMCAAAASALFGAWSLARADVTDSTQLALRAMAPTQLAAAVMLSAGGVVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRR-ETASPTANCVGSCAVCTQACH 115
HTAL+V+IVC+AGA+GTLAAGSWQSA++AL R +T A+C GSCA CT +CH
Sbjct 61 SPHTALVVLIVCVAGALGTLAAGSWQSARFALSRVDTIPDEASCSGSCAGCTLSCH 116
>gi|118615968|ref|YP_904300.1| hypothetical protein MUL_0054 [Mycobacterium ulcerans Agy99]
gi|118568078|gb|ABL02829.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans
Agy99]
Length=116
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/116 (71%), Positives = 96/116 (83%), Gaps = 1/116 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLCMCAAAASALFG+WSL D T LALRAMAPTQLAAAVML+AGGVVA+AA
Sbjct 1 MMIAGVLCMCAAAASALFGAWSLARADVTDSTQLALRAMAPTQLAAAVMLSAGGVVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRR-ETASPTANCVGSCAVCTQACH 115
+TAL+V+IVC+AGA+GTLAAGSWQSA++AL R +T A+C GSCA CT +CH
Sbjct 61 SPYTALVVLIVCVAGALGTLAAGSWQSARFALSRVDTIPDEASCSGSCAGCTLSCH 116
>gi|15826891|ref|NP_301154.1| hypothetical protein ML0030 [Mycobacterium leprae TN]
gi|221229369|ref|YP_002502785.1| hypothetical protein MLBr_00030 [Mycobacterium leprae Br4923]
gi|13431980|sp|O32871.1|Y030_MYCLE RecName: Full=Uncharacterized protein ML0030
gi|2344828|emb|CAA94725.1| hypothetical protein [Mycobacterium leprae]
gi|13092438|emb|CAC29538.1| putative membrane protein [Mycobacterium leprae]
gi|219932476|emb|CAR70123.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=113
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/115 (63%), Positives = 87/115 (76%), Gaps = 2/115 (1%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AG LC+CAA SA+FG+W+L H T DPT LA+RAMAP QLAAA+MLAAGGVVA+ A
Sbjct 1 MLIAGTLCVCAAVISAVFGTWALIHNQTVDPTQLAMRAMAPPQLAAAIMLAAGGVVALVA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
HTAL+VV VC+ GAVGTLAAGSWQSA+Y LRR + +C +CA C +C
Sbjct 61 VAHTALIVVAVCVTGAVGTLAAGSWQSARYTLRRR--ATATSCGKNCAGCILSCR 113
>gi|296167090|ref|ZP_06849500.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897532|gb|EFG77128.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=113
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/115 (69%), Positives = 98/115 (86%), Gaps = 2/115 (1%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLCMCAA ASA FG+WSL T +PTALALR++AP QLAAA+MLAAGGVVA+AA
Sbjct 1 MLIAGVLCMCAAVASAGFGTWSLARTQNGEPTALALRSVAPAQLAAAIMLAAGGVVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
P HTAL+V++VC+AGA+GTLAAGSWQSA++AL++E A+ C G+CA CTQ+CH
Sbjct 61 PPHTALVVLLVCVAGAIGTLAAGSWQSARFALQQEAAA--PACAGACAGCTQSCH 113
>gi|342860238|ref|ZP_08716890.1| hypothetical protein MCOL_15215 [Mycobacterium colombiense CECT
3035]
gi|342132616|gb|EGT85845.1| hypothetical protein MCOL_15215 [Mycobacterium colombiense CECT
3035]
Length=113
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/114 (68%), Positives = 92/114 (81%), Gaps = 2/114 (1%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +AGVLCMCAA ASA FG+WSL H TALALRAMAPTQLAAAVMLAAGG VA+AA
Sbjct 1 MLIAGVLCMCAAVASAGFGTWSLAHNRNFGATALALRAMAPTQLAAAVMLAAGGAVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQAC 114
TAL+V++VC+ GA+GTLAAGS+QSA+ A+R++ A+P C GSCA CTQ+C
Sbjct 61 VPDTALVVLVVCVVGALGTLAAGSYQSARIAVRQQAAAPA--CAGSCAGCTQSC 112
>gi|333992965|ref|YP_004525579.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333488933|gb|AEF38325.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=148
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/94 (48%), Positives = 61/94 (65%), Gaps = 0/94 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M + GVLC+ AA S +FG +L T DP L LRA+AP Q+A V+LA GG + +A
Sbjct 1 MLIMGVLCLVAAVVSLVFGVRTLARPLTGDPEQLVLRAVAPAQVAVGVILAVGGALVLAG 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRR 94
P AL+ +I+ I GA+ LAAG+WQ A+YA R+
Sbjct 61 PPAVALLALIISITGALVILAAGAWQGARYAARQ 94
>gi|118473301|ref|YP_891115.1| hypothetical protein MSMEG_6920 [Mycobacterium smegmatis str.
MC2 155]
gi|118174588|gb|ABK75484.1| hypothetical protein MSMEG_6920 [Mycobacterium smegmatis str.
MC2 155]
Length=122
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/89 (59%), Positives = 62/89 (70%), Gaps = 0/89 (0%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M +A +LC+ AA A+ G W L DP LRA+APTQLAAAVMLAAGGV A+AA
Sbjct 1 MLIAALLCLSAAVVVAVLGLWLLTRPHYGDPVRGVLRAVAPTQLAAAVMLAAGGVTALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQ 89
T LMVV+VC+ GAV T+AAG WQSA+
Sbjct 61 APQTGLMVVVVCVIGAVATVAAGCWQSAK 89
>gi|108802350|ref|YP_642547.1| hypothetical protein Mmcs_5391 [Mycobacterium sp. MCS]
gi|119871503|ref|YP_941455.1| hypothetical protein Mkms_5480 [Mycobacterium sp. KMS]
gi|126438330|ref|YP_001074021.1| hypothetical protein Mjls_5767 [Mycobacterium sp. JLS]
gi|108772769|gb|ABG11491.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119697592|gb|ABL94665.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126238130|gb|ABO01531.1| hypothetical protein Mjls_5767 [Mycobacterium sp. JLS]
Length=119
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/119 (54%), Positives = 75/119 (64%), Gaps = 4/119 (3%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAA 60
M VLC+CAA A A G W L +ADP LRA+APTQLAA+VMLAAGGVVA+AA
Sbjct 1 MVFVAVLCLCAAVAVAGLGLWLLTRPRSADPRQQILRAVAPTQLAASVMLAAGGVVALAA 60
Query 61 PGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRE----TASPTANCVGSCAVCTQACH 115
P T ++ VI C GAV T+AAG WQSA+ R E A A+C GSCA C +C
Sbjct 61 PPETGVLAVIACGVGAVATVAAGCWQSAKVVARTEAAQAAAGADADCAGSCASCVLSCR 119
>gi|308394020|ref|ZP_07669320.1| hypothetical protein TMLG_00771 [Mycobacterium tuberculosis SUMu012]
gi|308367789|gb|EFP56640.1| hypothetical protein TMLG_00771 [Mycobacterium tuberculosis SUMu012]
Length=36
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/36 (98%), Positives = 36/36 (100%), Gaps = 0/36 (0%)
Query 80 LAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 115
+AAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
Sbjct 1 MAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH 36
>gi|120406985|ref|YP_956814.1| hypothetical protein Mvan_6056 [Mycobacterium vanbaalenii PYR-1]
gi|119959803|gb|ABM16808.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=123
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 55/75 (74%), Gaps = 0/75 (0%)
Query 21 WSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTL 80
WSL P+ D LRA+APTQLAAAVMLAAG VVA++A ++++++VC+AGA GT+
Sbjct 21 WSLMRRPSTDYVQQVLRAVAPTQLAAAVMLAAGAVVALSATAPMSVVILVVCVAGATGTV 80
Query 81 AAGSWQSAQYALRRE 95
AAG WQ+AQ RR
Sbjct 81 AAGCWQAAQAVGRRN 95
>gi|145221445|ref|YP_001132123.1| hypothetical protein Mflv_0851 [Mycobacterium gilvum PYR-GCK]
gi|145213931|gb|ABP43335.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=125
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/122 (47%), Positives = 81/122 (67%), Gaps = 9/122 (7%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAV-- 58
M +A ++ +CAAAA+A G+WSL P+ D LRA+APTQLAAAVMLAAGG++A+
Sbjct 3 MLVAALVTLCAAAATAAVGTWSLLRRPSTDFVQQVLRAVAPTQLAAAVMLAAGGLLALAV 62
Query 59 -AAPGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVG-----SCAVCTQ 112
+ G A ++++VC+ GAV T+AAG WQ+A+ + RE A TA+ G +C CT
Sbjct 63 GSRQGAPAAVILLVCVVGAVATVAAGCWQAAKM-VTRENARQTASSGGCGSESACGSCTL 121
Query 113 AC 114
+C
Sbjct 122 SC 123
>gi|315446803|ref|YP_004079682.1| hypothetical protein Mspyr1_53230 [Mycobacterium sp. Spyr1]
gi|315265106|gb|ADU01848.1| hypothetical protein Mspyr1_53230 [Mycobacterium sp. Spyr1]
Length=123
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/122 (46%), Positives = 80/122 (66%), Gaps = 9/122 (7%)
Query 1 MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAV-- 58
M +A ++ +CAAAA+A G+WSL P+ D LRA+APTQLAAAVMLAAGG++A+
Sbjct 1 MLVAALVTLCAAAATAAVGTWSLLRRPSTDFVQQVLRAVAPTQLAAAVMLAAGGLLALAV 60
Query 59 -AAPGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVG-----SCAVCTQ 112
+ G A ++++VC+ GAV T+AAG WQ+A+ + RE A A+ G +C CT
Sbjct 61 GSRQGPPAAVILLVCVVGAVATVAAGCWQAAKM-VTRENARKAASSGGCGSESACGSCTL 119
Query 113 AC 114
+C
Sbjct 120 SC 121
>gi|317055193|ref|YP_004103660.1| hypothetical protein Rumal_0473 [Ruminococcus albus 7]
gi|315447462|gb|ADU21026.1| hypothetical protein Rumal_0473 [Ruminococcus albus 7]
Length=160
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 22/25 (88%), Gaps = 0/25 (0%)
Query 64 TALMVVIVCIAGAVGTLAAGSWQSA 88
+A+++++ CIA A+GTLAAGSWQ A
Sbjct 101 SAVILILFCIACAIGTLAAGSWQGA 125
Lambda K H
0.325 0.127 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131043835296
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40