BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0043c Length=244 Score E Sequences producing significant alignments: (Bits) Value gi|15607185|ref|NP_214557.1| GntR family transcriptional regulat... 502 2e-140 gi|289445569|ref|ZP_06435313.1| transcriptional regulator, gntR-... 485 2e-135 gi|240168772|ref|ZP_04747431.1| putative transcriptional regulat... 391 6e-107 gi|296167081|ref|ZP_06849492.1| GntR family transcriptional regu... 389 3e-106 gi|342860231|ref|ZP_08716883.1| GntR family transcriptional regu... 384 5e-105 gi|254820304|ref|ZP_05225305.1| transcriptional regulator, GntR ... 382 2e-104 gi|118464635|ref|YP_879360.1| GntR family transcriptional regula... 378 3e-103 gi|336459432|gb|EGO38374.1| transcriptional regulator [Mycobacte... 378 3e-103 gi|254773105|ref|ZP_05214621.1| transcriptional regulator, GntR ... 378 3e-103 gi|41406151|ref|NP_958987.1| hypothetical protein MAP0053c [Myco... 375 3e-102 gi|183980097|ref|YP_001848388.1| GntR family transcriptional reg... 366 1e-99 gi|118615973|ref|YP_904305.1| GntR family transcriptional regula... 363 1e-98 gi|118470251|ref|YP_891107.1| HTH-type transcriptional regulator... 293 1e-77 gi|315446795|ref|YP_004079674.1| GntR family transcriptional reg... 275 3e-72 gi|145221453|ref|YP_001132131.1| regulatory protein GntR [Mycoba... 272 3e-71 gi|108802341|ref|YP_642538.1| GntR family transcriptional regula... 258 5e-67 gi|126438321|ref|YP_001074012.1| GntR family transcriptional reg... 256 2e-66 gi|120406976|ref|YP_956805.1| regulatory protein GntR [Mycobacte... 247 1e-63 gi|342857693|ref|ZP_08714349.1| GntR family transcriptional regu... 140 1e-31 gi|269126746|ref|YP_003300116.1| GntR family transcriptional reg... 120 1e-25 gi|312199221|ref|YP_004019282.1| GntR family transcriptional reg... 119 4e-25 gi|312195407|ref|YP_004015468.1| GntR family transcriptional reg... 105 6e-21 gi|288923168|ref|ZP_06417313.1| transcriptional regulator, GntR ... 102 4e-20 gi|288923336|ref|ZP_06417469.1| transcriptional regulator, GntR ... 101 1e-19 gi|158315721|ref|YP_001508229.1| GntR family transcriptional reg... 95.5 6e-18 gi|269126743|ref|YP_003300113.1| GntR family transcriptional reg... 95.5 6e-18 gi|158313402|ref|YP_001505910.1| GntR family transcriptional reg... 95.1 8e-18 gi|288919886|ref|ZP_06414209.1| transcriptional regulator, GntR ... 94.7 1e-17 gi|312198828|ref|YP_004018889.1| GntR family transcriptional reg... 94.4 1e-17 gi|288918709|ref|ZP_06413056.1| transcriptional regulator, GntR ... 85.1 8e-15 gi|288921053|ref|ZP_06415344.1| transcriptional regulator, GntR ... 84.7 1e-14 gi|312199054|ref|YP_004019115.1| GntR family transcriptional reg... 84.0 2e-14 gi|312199791|ref|YP_004019852.1| GntR family transcriptional reg... 82.0 8e-14 gi|262204026|ref|YP_003275234.1| GntR family transcriptional reg... 81.3 1e-13 gi|337277692|ref|YP_004617163.1| GntR family transcriptional reg... 80.5 2e-13 gi|302526481|ref|ZP_07278823.1| predicted protein [Streptomyces ... 79.0 6e-13 gi|302527302|ref|ZP_07279644.1| predicted protein [Streptomyces ... 78.6 8e-13 gi|288919460|ref|ZP_06413792.1| transcriptional regulator, GntR ... 76.3 4e-12 gi|288919213|ref|ZP_06413550.1| transcriptional regulator, GntR ... 76.3 4e-12 gi|118473927|ref|YP_890848.1| GntR family transcriptional regula... 74.7 1e-11 gi|284045536|ref|YP_003395876.1| GntR family transcriptional reg... 74.7 1e-11 gi|156742519|ref|YP_001432648.1| GntR family transcriptional reg... 72.8 4e-11 gi|312196726|ref|YP_004016787.1| GntR family transcriptional reg... 72.0 8e-11 gi|295695888|ref|YP_003589126.1| GntR family transcriptional reg... 71.6 1e-10 gi|345040019|gb|EGW44314.1| hypothetical protein HMPREF0178_0286... 71.2 1e-10 gi|333990986|ref|YP_004523600.1| GntR family transcriptional reg... 70.5 2e-10 gi|330809174|ref|YP_004353636.1| GntR family transcriptional reg... 69.3 4e-10 gi|229820030|ref|YP_002881556.1| GntR family transcriptional reg... 69.3 4e-10 gi|317484029|ref|ZP_07942963.1| gntR family Bacterial regulatory... 69.3 5e-10 gi|91787168|ref|YP_548120.1| GntR family transcriptional regulat... 69.3 5e-10 >gi|15607185|ref|NP_214557.1| GntR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|15839420|ref|NP_334457.1| GntR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791220|ref|NP_853713.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97] 82 more sequence titles Length=244 Score = 502 bits (1293), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%), Gaps = 0/244 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK Sbjct 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA Sbjct 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFARSYQPS 240 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFARSYQPS Sbjct 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFARSYQPS 240 Query 241 SPVP 244 SPVP Sbjct 241 SPVP 244 >gi|289445569|ref|ZP_06435313.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis CPHL_A] gi|289418527|gb|EFD15728.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis CPHL_A] Length=237 Score = 485 bits (1249), Expect = 2e-135, Method: Compositional matrix adjust. Identities = 236/237 (99%), Positives = 236/237 (99%), Gaps = 0/237 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAFIERF VATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK Sbjct 61 VSTRYHRGAFIERFAVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA Sbjct 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFARSY 237 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFARSY Sbjct 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFARSY 237 >gi|240168772|ref|ZP_04747431.1| putative transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=253 Score = 391 bits (1004), Expect = 6e-107, Method: Compositional matrix adjust. Identities = 192/250 (77%), Positives = 213/250 (86%), Gaps = 9/250 (3%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYG+KEKDQVV+HIL+L+LTGKLRSGDRVDRNEIA GLGVSRVPIQEALVQLEHDG+ Sbjct 1 MPKKYGIKEKDQVVSHILDLILTGKLRSGDRVDRNEIAQGLGVSRVPIQEALVQLEHDGV 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAAANPTPRILGQLDA+MRSLR SK Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAAANPTPRILGQLDALMRSLRMSK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 E R F+E EYRRTVNDEYAGPRL A+IRASQNLIPR FW+TYQN RDD+L FYE+E++ Sbjct 121 EPRTFSEVAHEYRRTVNDEYAGPRLRASIRASQNLIPRAFWLTYQNGRDDMLSFYEDEHS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACP---------GPFGAPIP 231 AIHRR+PEAARAACIGRS+LMA TMLAELFRRRV P G P P + + Sbjct 181 AIHRRDPEAARAACIGRSQLMAHTMLAELFRRRVFTPHGGIGPDQIPVRLAMAPEPSAVG 240 Query 232 GFARSYQPSS 241 A + +PSS Sbjct 241 ALAGTREPSS 250 >gi|296167081|ref|ZP_06849492.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897571|gb|EFG77166.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=245 Score = 389 bits (998), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 187/229 (82%), Positives = 206/229 (90%), Gaps = 3/229 (1%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLR+GDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRTGDRVDRNEIALGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAA +PTPRILGQLDA+MRSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATSPTPRILGQLDALMRSLRTAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SRAF + EYRRT+NDEYAGPRLHATIRASQNL+PRVFW+TYQ RD++LPFYE+E A Sbjct 121 DSRAFCDLADEYRRTINDEYAGPRLHATIRASQNLVPRVFWLTYQGGRDEMLPFYEDETA 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGA---CPGPF 226 AIHRR+PEAARAAC+GRS LMAQTMLAEL RRRV PP+ PGP Sbjct 181 AIHRRDPEAARAACVGRSYLMAQTMLAELSRRRVFTPPDDMTRLVPGPL 229 >gi|342860231|ref|ZP_08716883.1| GntR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342132609|gb|EGT85838.1| GntR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=246 Score = 384 bits (987), Expect = 5e-105, Method: Compositional matrix adjust. Identities = 186/231 (81%), Positives = 206/231 (90%), Gaps = 3/231 (1%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLRSGDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRSGDRVDRNEIALGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDG+LNGIASARAA +PTPRILGQLD +MRSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGMLNGIASARAATSPTPRILGQLDTLMRSLRIAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SRAF + EYRRTVN+EYAGPRLHATIRASQ+LIPR+FW TYQ+ RD++LPFYE+E A Sbjct 121 DSRAFTDVAAEYRRTVNEEYAGPRLHATIRASQSLIPRLFWTTYQSGRDEMLPFYEDETA 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGA---CPGPFGA 228 AI RR+PEAARAAC+ RS LMAQTMLAELFRRRV PP+ A PGP A Sbjct 181 AIQRRDPEAARAACVDRSYLMAQTMLAELFRRRVFTPPDDASRVVPGPLRA 231 >gi|254820304|ref|ZP_05225305.1| transcriptional regulator, GntR family protein [Mycobacterium intracellulare ATCC 13950] Length=246 Score = 382 bits (981), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 187/243 (77%), Positives = 208/243 (86%), Gaps = 3/243 (1%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLRSGDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRSGDRVDRNEIALGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAA NPTPRILGQLD +MRSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATNPTPRILGQLDTLMRSLRAAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 ++RAF++ EYRRTVNDEYAGPRLHATIRASQNLIPR+FW TYQ R+++LPFYE+EN+ Sbjct 121 DARAFSDIAAEYRRTVNDEYAGPRLHATIRASQNLIPRLFWTTYQGGREEILPFYEDENS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEG---ACPGPFGAPIPGFARSY 237 AIHRR+P+AARAAC+ RS LMAQTMLAEL RRRV P + GP G A S Sbjct 181 AIHRRDPDAARAACVDRSYLMAQTMLAELVRRRVFTPSDDIGRVAAGPLQVITGGEAISA 240 Query 238 QPS 240 + S Sbjct 241 EAS 243 >gi|118464635|ref|YP_879360.1| GntR family transcriptional regulator [Mycobacterium avium 104] gi|118165922|gb|ABK66819.1| transcriptional regulator, GntR family protein [Mycobacterium avium 104] Length=246 Score = 378 bits (971), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 184/234 (79%), Positives = 205/234 (88%), Gaps = 1/234 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLR+GDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRTGDRVDRNEIAVGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAA +PTPRILG+LD ++RSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATSPTPRILGELDTLLRSLRTAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SRAF + +YRRTVNDEYAGPRLHATIRASQNLIPR+FW TYQ RDD+LPFYE+E + Sbjct 121 DSRAFTDIAAQYRRTVNDEYAGPRLHATIRASQNLIPRLFWTTYQGGRDDLLPFYEDETS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFA 234 AIHRR+PEAARAAC+ RS MAQTML ELFRRRV PP+ A G P+P A Sbjct 181 AIHRRDPEAARAACVERSYRMAQTMLGELFRRRVFTPPDDAGRVVAG-PLPVLA 233 >gi|336459432|gb|EGO38374.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=246 Score = 378 bits (971), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 184/234 (79%), Positives = 205/234 (88%), Gaps = 1/234 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLR+GDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRTGDRVDRNEIAVGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAA +PTPRILG+LD ++RSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATSPTPRILGELDTLLRSLRTAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SRAF + +YRRTVNDEYAGPRLHATIRASQNLIPR+FW TYQ RDD+LPFYE+E + Sbjct 121 DSRAFTDIAADYRRTVNDEYAGPRLHATIRASQNLIPRLFWTTYQGGRDDLLPFYEDETS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFA 234 AIHRR+PEAARAAC+ RS MAQTML ELFRRRV PP+ A G P+P A Sbjct 181 AIHRRDPEAARAACVERSYRMAQTMLGELFRRRVFTPPDDAGRVVAG-PLPVLA 233 >gi|254773105|ref|ZP_05214621.1| transcriptional regulator, GntR family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=246 Score = 378 bits (971), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 184/234 (79%), Positives = 205/234 (88%), Gaps = 1/234 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLR+GDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRTGDRVDRNEIAVGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAA +PTPRILG+LD ++RSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATSPTPRILGELDTLLRSLRTAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SRAF + EYRRTVNDEYAGPRLHATIRASQNLIPR+FW TYQ RDD+LPFYE+E + Sbjct 121 DSRAFTDIAAEYRRTVNDEYAGPRLHATIRASQNLIPRLFWTTYQGGRDDLLPFYEDETS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGACPGPFGAPIPGFA 234 AIHRR+PE+ARAAC+ RS MAQTML ELFRRRV PP+ A G P+P A Sbjct 181 AIHRRDPESARAACVERSYRMAQTMLGELFRRRVFTPPDDAGRVVAG-PLPVLA 233 >gi|41406151|ref|NP_958987.1| hypothetical protein MAP0053c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394499|gb|AAS02370.1| hypothetical protein MAP_0053c [Mycobacterium avium subsp. paratuberculosis K-10] Length=246 Score = 375 bits (963), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 179/221 (81%), Positives = 199/221 (91%), Gaps = 0/221 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+HIL+LLLTGKLR+GDRVDRNEIA GLGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHILHLLLTGKLRTGDRVDRNEIAVGLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+LEHHELDGLLNGIASARAA +PTPRILG+LD ++RSLR +K Sbjct 61 VSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATSPTPRILGELDTLLRSLRTAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SRAF + +YRRTVNDEYAGP LHATIRASQNLIPR+FW TYQ RDD+LPFYE+E + Sbjct 121 DSRAFTDIAADYRRTVNDEYAGPGLHATIRASQNLIPRLFWTTYQGGRDDLLPFYEDETS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGA 221 AIHRR+PEAARAAC+ RS MAQTML ELFRRRV PP+ A Sbjct 181 AIHRRDPEAARAACVERSYRMAQTMLGELFRRRVFTPPDDA 221 >gi|183980097|ref|YP_001848388.1| GntR family transcriptional regulator [Mycobacterium marinum M] gi|183173423|gb|ACC38533.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium marinum M] Length=254 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 173/222 (78%), Positives = 200/222 (91%), Gaps = 0/222 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKDQVVAH+LNL+LTGKLRSGDRVDRNEIA LGVSRVPIQEALVQLEHDGI Sbjct 1 MPKKYGVKEKDQVVAHLLNLILTGKLRSGDRVDRNEIAGSLGVSRVPIQEALVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD +T+LEH+EL+G+LNG+ASAR AANPTPRILG+LD +MR+LR +K Sbjct 61 VSTRYHRGAFVERFDQSTVLEHYELEGVLNGMASARTAANPTPRILGELDGLMRTLRAAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 ++R FAE EYRRT+N+EYAGPRL A IRASQNLIP FW +YQ R+D+LPFYE+E++ Sbjct 121 DARIFAELTSEYRRTINEEYAGPRLQALIRASQNLIPGAFWASYQYRREDMLPFYEDEHS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGAC 222 AIHRR+P+AARAAC GRSELMAQ+MLAELFRR+V P E AC Sbjct 181 AIHRRDPQAARAACSGRSELMAQSMLAELFRRQVFTPHEQAC 222 >gi|118615973|ref|YP_904305.1| GntR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118568083|gb|ABL02834.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium ulcerans Agy99] Length=254 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 172/222 (78%), Positives = 199/222 (90%), Gaps = 0/222 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKK GVKEKDQVVAH+LNL+LTGKLRSGDRVDRNEIA GLGVSRVPIQEALVQLEHDG+ Sbjct 1 MPKKCGVKEKDQVVAHLLNLILTGKLRSGDRVDRNEIAGGLGVSRVPIQEALVQLEHDGV 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD +T+LEH+EL+G+LNG+ASAR AANPTPRILG+LD +MR+LR +K Sbjct 61 VSTRYHRGAFVERFDQSTVLEHYELEGVLNGMASARTAANPTPRILGELDGLMRTLRAAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 ++R FAE EYRRT+N+EYAGPRL A IRASQNLIP FW +YQ R+D+LPFYE+E++ Sbjct 121 DARIFAELASEYRRTINEEYAGPRLQALIRASQNLIPGAFWASYQYRREDMLPFYEDEHS 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGAC 222 AIHRR+P+AARAAC GRSELMAQ MLAELFRR+V P E AC Sbjct 181 AIHRRDPQAARAACSGRSELMAQAMLAELFRRQVFTPHEQAC 222 >gi|118470251|ref|YP_891107.1| HTH-type transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171538|gb|ABK72434.1| putative HTH-type transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length=221 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 137/215 (64%), Positives = 171/215 (80%), Gaps = 0/215 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKDQVV+HI+NL++TGKLR+GDR+DRNEI LG+SRVPIQEA+VQLEHDGI Sbjct 1 MPKKYGVKEKDQVVSHIINLMMTGKLRTGDRIDRNEIVRDLGLSRVPIQEAVVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 +STRYHRGAF+ RFD AT+ EHHEL G+LNGI+SAR AANPTPRIL QL+ +R + +K Sbjct 61 LSTRYHRGAFVARFDEATVAEHHELYGILNGISSARCAANPTPRILAQLEESLRIMHAAK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 + + F + W +R T+NDEYAGPRL ATIRA ++ P FW Y S+ + LP Y++E A Sbjct 121 DVKTFQDNCWVFRNTINDEYAGPRLQATIRAGESFAPSDFWTGYTPSKTEFLPTYDDEFA 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 AI R+PE AR AC+ RSE+M++ M+AEL RR V Sbjct 181 AIRDRDPENARKACMHRSEIMSRIMIAELTRRGVF 215 >gi|315446795|ref|YP_004079674.1| GntR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315265098|gb|ADU01840.1| transcriptional regulator, GntR family [Mycobacterium sp. Spyr1] Length=217 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/215 (62%), Positives = 162/215 (76%), Gaps = 0/215 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV H++N++LTG+LRSGDR+DRNEIA LG+SRVP+QEA+VQLEHDGI Sbjct 1 MPKKYGVKEKDLVVTHVVNMVLTGRLRSGDRLDRNEIASELGLSRVPVQEAVVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 +STRYHRGAF+ERFD +T+ EHHEL G+L G+AS RAA P +L L+A +R+ + Sbjct 61 LSTRYHRGAFVERFDESTVREHHELYGVLCGLASGRAATASEPTVLADLEAATAQMRSGR 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SR F +R T+N EYAGPRL A I ASQ LIP FW +Y RD +LPFYE E Sbjct 121 DSRQFDSYARRFRSTINGEYAGPRLQAAIDASQTLIPHTFWQSYLQHRDQLLPFYESELT 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 AI R+P+AARAAC RS++MA +L EL RR VL Sbjct 181 AIRDRDPDAARAACAQRSDVMACALLTELVRRGVL 215 >gi|145221453|ref|YP_001132131.1| regulatory protein GntR [Mycobacterium gilvum PYR-GCK] gi|145213939|gb|ABP43343.1| transcriptional regulator, GntR family [Mycobacterium gilvum PYR-GCK] Length=217 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/215 (61%), Positives = 161/215 (75%), Gaps = 0/215 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV H++N++LTG+LRSGDR+DRNEIA LG+SRVP+QEA+VQLEHDGI Sbjct 1 MPKKYGVKEKDLVVTHVVNMVLTGRLRSGDRLDRNEIASELGLSRVPVQEAVVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 +STRYHRGAF+ERFD +T+ EHHEL G+L G+AS RAA P +L L+A +R+ + Sbjct 61 LSTRYHRGAFVERFDESTVREHHELYGVLCGLASGRAATASEPTVLADLEAATAQMRSGR 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SR F +R +N EYAGPRL A I ASQ LIP FW +Y RD +LPFYE E Sbjct 121 DSRQFDSHARRFRSIINGEYAGPRLQAAIDASQTLIPHAFWQSYLQHRDQLLPFYESELT 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 AI R+P+AARAAC RS++MA +L EL RR VL Sbjct 181 AIRDRDPDAARAACAQRSDVMACALLTELVRRGVL 215 >gi|108802341|ref|YP_642538.1| GntR family transcriptional regulator [Mycobacterium sp. MCS] gi|119871494|ref|YP_941446.1| GntR family transcriptional regulator [Mycobacterium sp. KMS] gi|108772760|gb|ABG11482.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS] gi|119697583|gb|ABL94656.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS] Length=220 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 132/220 (60%), Positives = 164/220 (75%), Gaps = 0/220 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPK+YGVKEKDQVVA++++L+LTG+LR G R+DRN IA LGVSRVP+QEA+VQLEHDGI Sbjct 1 MPKRYGVKEKDQVVAYVVDLVLTGRLRGGHRIDRNAIAEALGVSRVPVQEAMVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD AT+ EHHEL G+L GIASARAA +P P +LG+LD ++ +R K Sbjct 61 VSTRYHRGAFVERFDAATLHEHHELYGVLTGIASARAATDPNPELLGELDDTLQHMRKGK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 + R F E +R VN+ YAGPRLHA IRASQ FW++Y R ++LP Y++E Sbjct 121 DRRLFHEGCQRFRDIVNEAYAGPRLHAAIRASQCFAASDFWVSYPRVRAELLPTYQQEAT 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEG 220 AI R+ AR AC+ RS+LMA M+AEL RR VL G Sbjct 181 AIAARDAAGARTACLERSDLMATIMVAELTRRGVLAGDGG 220 >gi|126438321|ref|YP_001074012.1| GntR family transcriptional regulator [Mycobacterium sp. JLS] gi|126238121|gb|ABO01522.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS] Length=220 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 131/220 (60%), Positives = 163/220 (75%), Gaps = 0/220 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPK+YGVKEKDQVVA++++L+LTG+LR G R+DRN IA LGVSRVP+QEA+VQLEHDGI Sbjct 1 MPKRYGVKEKDQVVAYVVDLVLTGRLRGGHRIDRNAIAEALGVSRVPVQEAMVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGAF+ERFD A + EHHEL G+L GIASARAA +P P +LG+LD ++ +R K Sbjct 61 VSTRYHRGAFVERFDAAALHEHHELYGVLTGIASARAATDPNPELLGELDDTLQHMRKGK 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 + R F E +R V+D YAGPRLHA IRASQ FW++Y R ++LP Y++E Sbjct 121 DRRLFHEGCQRFRDIVDDAYAGPRLHAAIRASQCFAASDFWVSYPRVRAELLPTYQQEAT 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPEG 220 AI R+ AR AC+ RS+LMA M+AEL RR VL G Sbjct 181 AIAARDAAGARTACLERSDLMATIMVAELTRRGVLAGDGG 220 >gi|120406976|ref|YP_956805.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1] gi|119959794|gb|ABM16799.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii PYR-1] Length=221 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 132/219 (61%), Positives = 168/219 (77%), Gaps = 0/219 (0%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPKKYGVKEKD VV+H++ ++LTG+LRSGDR+DRNEIAH LG+SRVP+QEA+VQLEHDGI Sbjct 1 MPKKYGVKEKDLVVSHVVEMVLTGRLRSGDRLDRNEIAHDLGLSRVPVQEAVVQLEHDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 VSTRYHRGA++ERFD +T+ EHHEL GLL+GIASARAAA P ++ LD + +R ++ Sbjct 61 VSTRYHRGAYVERFDESTVREHHELYGLLSGIASARAAAASDPAVVDTLDGELTQMRGAR 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA 180 +SR F +R T+N++YAGPRL A + +S+ IPR FW TY RD +LP YE E A Sbjct 121 DSRQFDNHADRFRTTINEQYAGPRLQAAVNSSRTFIPRAFWQTYPQHRDRLLPSYEAELA 180 Query 181 AIHRREPEAARAACIGRSELMAQTMLAELFRRRVLVPPE 219 A+ EP+AARAAC R+E+MA +L EL RR VL P+ Sbjct 181 AVRAGEPDAARAACAQRAEVMASILLTELVRRGVLRAPQ 219 >gi|342857693|ref|ZP_08714349.1| GntR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342135026|gb|EGT88192.1| GntR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=226 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/217 (40%), Positives = 127/217 (59%), Gaps = 3/217 (1%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 MPK+YG+K++D+ A ++ L G+LRSGD++DR IA +G+SRVP+QE L QLE DGI Sbjct 1 MPKQYGIKDRDRAAAWVMERLFDGRLRSGDKLDRQRIADEVGISRVPVQEMLGQLERDGI 60 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 V + YHR A +E FD + E +EL GL+ G A+A AA T + +L A++ +R++ Sbjct 61 VRSEYHRAARLEPFDPDAVHETYELFGLVTGHAAAAAALAMTAGLANELSALVAEMRDAN 120 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQ--NSRDDVLPFYEEE 178 + R F E WE+RR VN +GPR+ A + + +P + + +R +L Y E Sbjct 121 KER-FNELTWEFRRLVNTAASGPRMRAMLSTFRTFMPTAYTLLLDRPGNRAAILRHYRGE 179 Query 179 NAAIHRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 A+ + + AR A R A+ +L EL RR V Sbjct 180 CRALTKGDSAGARRAAESRCADEAEMLLTELVRRGVF 216 >gi|269126746|ref|YP_003300116.1| GntR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311704|gb|ACY98078.1| transcriptional regulator, GntR family [Thermomonospora curvata DSM 43183] Length=235 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/209 (36%), Positives = 116/209 (56%), Gaps = 9/209 (4%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 +QV +I L+ G+LR GDRV ++EIA LGVSR+P++EAL+ LE +G V+ + HRGAF Sbjct 27 EQVALYIRRLIFEGRLRQGDRVPQDEIARALGVSRIPVREALLSLEREGWVTIKPHRGAF 86 Query 71 IERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVW 130 I D A + +H+ L GL+ G A+ RA TP ++ LD + R+L+ +++ A A Sbjct 87 IGALDEAAVRDHYTLYGLVFGFAARRATERRTPEMVAHLDELCRALQRAEDPAAVARLSR 146 Query 131 EYRRTVNDEYAGPRLHATIRASQNLIPRVFWM----TYQNSRDDVLPFYEEENAAIHRRE 186 ++ R + PRL A +RA ++P F+ + RD +E A+ + Sbjct 147 DFGRLILQTAGSPRLRAVLRAMVGIVPGNFFALVPGAIEAERDGSRAIWE----AVRDGD 202 Query 187 PEAARAACIGRSELMAQTMLAELFRRRVL 215 P+ A AC + + ++AELF R L Sbjct 203 PDRAAWACAQKLQRQGD-LVAELFATRGL 230 >gi|312199221|ref|YP_004019282.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311230557|gb|ADP83412.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length=218 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/208 (35%), Positives = 115/208 (56%), Gaps = 0/208 (0%) Query 8 KEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHR 67 K + VV +++ + G+LRSG RVD E+ LG+SR P++E LV LE DGIVS R+HR Sbjct 11 KASNAVVDYLMEEIFEGRLRSGQRVDLVEVGETLGLSRSPVREGLVMLERDGIVSIRHHR 70 Query 68 GAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAE 127 G F+E FD ++++ E+ GLL+G+A AR AA P ++ +L+ ++ LR++ E Sbjct 71 GVFVEPFDAESVMDDFEVMGLLSGVAVARLAARRDPAVVAELERLVEELRSAGSIDRIGE 130 Query 128 CVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREP 187 V E RT + RL A +RA +P VF + +R++++ E A I + Sbjct 131 IVPEILRTQHRAGGSRRLRAELRAFAGFLPWVFRVESGLTREEIIAEQERVLALIIAGDG 190 Query 188 EAARAACIGRSELMAQTMLAELFRRRVL 215 + A + + +++EL R VL Sbjct 191 DGAARQRTADFRVAGERVISELTARGVL 218 >gi|312195407|ref|YP_004015468.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311226743|gb|ADP79598.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length=222 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/217 (32%), Positives = 115/217 (53%), Gaps = 5/217 (2%) Query 1 MPKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 +P+K K VV +IL + G L+SGDR+D +++ L VSR+P++EA+V LE DG+ Sbjct 6 IPRK---KTSPAVVDYILEQIFEGHLKSGDRIDLDQVCRDLDVSRLPVREAIVMLERDGL 62 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRN-- 118 V++ YHRG F+E FD ++++ E+ GLL+G+A R A ++ +L+ ++ LR Sbjct 63 VTSTYHRGVFVEPFDAKSVIDDFEIIGLLSGVAVRRLAEEQDREVITELEGLVDELRAAP 122 Query 119 SKESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEE 178 + + E V T + RL A +RA +P VF ++ S D+++ + Sbjct 123 AGDRDRTIELVRTILTTEHRAGGSRRLRAELRAFTGYLPLVFRISTNRSHDEIVEAHARV 182 Query 179 NAAIHRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 A+ + E A + + ++ EL RR VL Sbjct 183 VRAVAAGDGEKAARYRVDDFRDAGRKVVQELARRGVL 219 >gi|288923168|ref|ZP_06417313.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288345481|gb|EFC79865.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=225 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/216 (33%), Positives = 109/216 (51%), Gaps = 2/216 (0%) Query 8 KEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHR 67 K VV +IL + G LRSGDR+D ++ L VSR+P++EA+V LE DGIVS+ +HR Sbjct 10 KTSTAVVDYILEQIFEGHLRSGDRIDLEQVCRELDVSRLPVREAIVMLERDGIVSSTFHR 69 Query 68 GAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRN--SKESRAF 125 G F+E FD +I + E+ GLL+G+A A ++ L+ ++ LR + Sbjct 70 GVFVEPFDARSINDDFEIIGLLSGVAVRHLAEERDAEVIAALEGLVDELRAVPQGDRERV 129 Query 126 AECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRR 185 E V T + RL A +R+ +P VF ++ S+ D + + AI Sbjct 130 VELVRLILTTEHRAGGSRRLRAELRSFSGYLPLVFRISTNRSQGDTVEAHARVVRAISAG 189 Query 186 EPEAARAACIGRSELMAQTMLAELFRRRVLVPPEGA 221 + E A + ++++AEL RR VL G+ Sbjct 190 DGEKAARHRLDDFREAGRSVVAELARRGVLSAETGS 225 >gi|288923336|ref|ZP_06417469.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288345327|gb|EFC79723.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=227 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/204 (32%), Positives = 108/204 (53%), Gaps = 1/204 (0%) Query 13 VVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIE 72 VV ++ + G LR GDRVD I LGVS P++EALV LE DG+++TR HR AF++ Sbjct 15 VVEYLQKEIFAGNLRYGDRVDVERIGTALGVSPTPVREALVLLERDGLIATRVHRVAFVQ 74 Query 73 RFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRA-FAECVWE 131 FD T+ + GLL+G+++AR A + P +L QL ++R+L +S + A + E Sbjct 75 HFDARTLRADFHVLGLLSGVSAARVAKDRDPEVLAQLQDLLRALADSDATGAQLLDLAEE 134 Query 132 YRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREPEAAR 191 + + PRL A ++ + + + + +R++++ AI +P A Sbjct 135 IVLAQHRAGSTPRLLAELKGAGGFLAWAVRQSDRRTREEIVEAQRRVIDAIAAGDPSEAS 194 Query 192 AACIGRSELMAQTMLAELFRRRVL 215 A + + + ++ EL RR VL Sbjct 195 RARLQDTRAAGEDVIRELIRRGVL 218 >gi|158315721|ref|YP_001508229.1| GntR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111126|gb|ABW13323.1| transcriptional regulator, GntR family [Frankia sp. EAN1pec] Length=282 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/211 (31%), Positives = 106/211 (51%), Gaps = 0/211 (0%) Query 12 QVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFI 71 QV +I NL+ +G+LR GD V ++EIA LGVSR+P++EA++ L+ +G V+ HRGAF+ Sbjct 70 QVADYIRNLIFSGELRQGDHVRQDEIAEDLGVSRIPVREAIIVLDQEGWVTNELHRGAFV 129 Query 72 ERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWE 131 D ++ +H+ L GLL G A+ RA L ++ R+LR + + A + Sbjct 130 HGLDENSVRDHYGLIGLLYGYAAQRATERGDDDGLARVQTAERALRAATDPTAVRDANEM 189 Query 132 YRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREPEAAR 191 + R + RL A R +IP F+ + D + A+ R+ E + Sbjct 190 FLRQIFALARSSRLKAMSRQMNGIIPGNFFELVPGTIDLQKKGITAVSRAVRARDGERSN 249 Query 192 AACIGRSELMAQTMLAELFRRRVLVPPEGAC 222 AA + + + ++ L R +L P+ A Sbjct 250 AAFVSLLQQHGERVVDLLRARNILWIPDEAA 280 >gi|269126743|ref|YP_003300113.1| GntR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311701|gb|ACY98075.1| transcriptional regulator, GntR family [Thermomonospora curvata DSM 43183] Length=273 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/151 (33%), Positives = 81/151 (54%), Gaps = 0/151 (0%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 +QV ++ L+ G LR G RV ++ IA LGVSR+P++EAL+ LE +G ++ HRG F Sbjct 60 EQVRLYVRRLIFDGVLRQGQRVPQDAIAQTLGVSRIPVREALIALEREGWMTIVPHRGVF 119 Query 71 IERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVW 130 + D +++ +H+EL GL G A RA P + QL + + + ++ E Sbjct 120 VNALDESSVRDHYELYGLFYGFAVRRAIERRGPELADQLAPLAAQIAETTDTEQLQELTQ 179 Query 131 EYRRTVNDEYAGPRLHATIRASQNLIPRVFW 161 + R V D PR+ + +R ++P F+ Sbjct 180 RFHRLVVDAAQSPRVRSLLRQMTGIVPGNFF 210 >gi|158313402|ref|YP_001505910.1| GntR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108807|gb|ABW11004.1| transcriptional regulator, GntR family [Frankia sp. EAN1pec] Length=215 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/204 (32%), Positives = 104/204 (51%), Gaps = 2/204 (0%) Query 21 LLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDVATIL 80 + G+LR GDR+D ++ LG+S P++EALV LE DG+VST+ HR AF+E FD T+ Sbjct 9 IFDGRLRPGDRIDVESVSATLGISPTPVREALVLLERDGVVSTQVHRAAFVEHFDARTLR 68 Query 81 EHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNS-KESRA-FAECVWEYRRTVND 138 + GLL+G+ +R A P +L ++ ++ LR + E+R + E E + Sbjct 69 ADFHVFGLLSGVTVSRIARGRDPGVLAEMQRILGELRATPAEARTRWYELTTELVLFQHQ 128 Query 139 EYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREPEAARAACIGRS 198 A PRL A +R + + + Q +V+ +E AI + A A + + Sbjct 129 AGATPRLRADLRGFGDFLDWAARQSDQRGHAEVVRAHELVIDAIAAGDVNGAAQARLADA 188 Query 199 ELMAQTMLAELFRRRVLVPPEGAC 222 +A+ ++ E RR VL GA Sbjct 189 RAVAEEVIREFVRRGVLSAEAGAV 212 >gi|288919886|ref|ZP_06414209.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288348718|gb|EFC82972.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=210 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/208 (30%), Positives = 104/208 (50%), Gaps = 8/208 (3%) Query 16 HILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFD 75 HI NL+ +G LR GD V ++EIA LGVSR+P++EA++ L+ +G V+ HRGAF+ D Sbjct 4 HIRNLIFSGVLRQGDHVRQDEIAEELGVSRIPVREAIIVLDREGWVTNELHRGAFVHGLD 63 Query 76 VATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWEYRRT 135 ++ +H+ + G+L G A+ARA +G+L R+L + + + + R Sbjct 64 ENSVRDHYGILGMLYGFAAARATERGDDEGIGRLRTAERALHAATDPEVVLDANEVFLRQ 123 Query 136 VNDEYAGPRLHATIRASQNLIPRVFWM----TYQNSRDDVLPFYEEENAAIHRREPEAAR 191 + A RL A R ++P F+ T + + Y A+ R+ +A Sbjct 124 IFALAASSRLKAMSRLMVGIVPGNFFALVPGTITPQKKGISTVYR----AVKARDGASAE 179 Query 192 AACIGRSELMAQTMLAELFRRRVLVPPE 219 AA + E + ++ L R +L P+ Sbjct 180 AAFVALLEQHGERVVTMLRTRNILWAPD 207 >gi|312198828|ref|YP_004018889.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311230164|gb|ADP83019.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length=229 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/218 (36%), Positives = 112/218 (52%), Gaps = 7/218 (3%) Query 2 PKKYGVKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIV 61 P K VV ++ + G+LRSGDRVD I+ L VS P++EALV LE DG+V Sbjct 5 PALRRTKTSAVVVEYVHREIFDGRLRSGDRVDVERISIALDVSPTPVREALVLLERDGLV 64 Query 62 STRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKE 121 +TR HR AF++ FD T+ + GLL G+A+ARAA + P +L QL +++ L S+ Sbjct 65 ATRVHRAAFVQHFDARTLRADFHVLGLLGGVAAARAAMDRDPAVLAQLRSLLDELAASEA 124 Query 122 SRAFA-ECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSR---DDVLPFYEE 177 + A + E R + A PRL A +R + W Q+ R DV+ + Sbjct 125 APARRHDLAAEIVRVQHQAGATPRLLAELRGLGGFLE---WAARQSDRRGHGDVVDAHRR 181 Query 178 ENAAIHRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 AI E A +A + + A+ ++ EL RR VL Sbjct 182 VIDAIAAGETRRASSARLTDARAAAEAVIGELTRRGVL 219 >gi|288918709|ref|ZP_06413056.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288349911|gb|EFC84141.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=224 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/150 (34%), Positives = 82/150 (55%), Gaps = 0/150 (0%) Query 12 QVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFI 71 QV HI L+ +G LR GDRV ++ IA LGVSR+P++EA++ LE +G ++ HRGAF+ Sbjct 16 QVADHIRGLIFSGALRQGDRVRQDMIAEELGVSRIPVREAMITLESEGWIAIEPHRGAFV 75 Query 72 ERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWE 131 D ++++++ L G L G+A+ +A P L A R L ++++ + Sbjct 76 HGLDRNSVIDYYALLGHLYGLAAEQATERGDPAGFAALAAAERRLCQAEDADELLRANEQ 135 Query 132 YRRTVNDEYAGPRLHATIRASQNLIPRVFW 161 + R + PRL + R +IP F+ Sbjct 136 FLRQIFAMANSPRLSSFSRLMTGIIPGNFF 165 >gi|288921053|ref|ZP_06415344.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288347571|gb|EFC81857.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=252 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/104 (41%), Positives = 66/104 (64%), Gaps = 0/104 (0%) Query 13 VVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIE 72 VV ++ + G LR GDR+D I LGVS P++EALV LE DG+++TR HR A + Sbjct 16 VVEYVQREIFAGSLRHGDRIDVERIGTALGVSPTPVREALVLLERDGLIATRMHRVAIVA 75 Query 73 RFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSL 116 FD T+ + G+L+G+A+AR A + P++L +L ++++L Sbjct 76 HFDAGTLRADFHVLGVLSGVAAARVAKDRDPQVLARLQDLLQAL 119 >gi|312199054|ref|YP_004019115.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311230390|gb|ADP83245.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length=241 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 82/150 (55%), Gaps = 0/150 (0%) Query 12 QVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFI 71 QV HI L+ G LR GD V ++EIA LGVSR+P++EA++ LE +G +S HRGAF+ Sbjct 33 QVADHIRGLIFAGTLRQGDHVRQDEIAEELGVSRIPVREAMIALESEGWISIEPHRGAFV 92 Query 72 ERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWE 131 D+ ++ +H+ L G L G+A+ RA + L A R+LR++++ Sbjct 93 HGLDLNSVRDHYALLGQLYGLAAERATERGDEDGIEALAAAERALRDAEDPEDILHANEA 152 Query 132 YRRTVNDEYAGPRLHATIRASQNLIPRVFW 161 Y R + PRL + R +IP F+ Sbjct 153 YLRQIFAMAHSPRLSSFGRLMTGVIPGNFF 182 >gi|312199791|ref|YP_004019852.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311231127|gb|ADP83982.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length=238 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/213 (30%), Positives = 105/213 (50%), Gaps = 7/213 (3%) Query 7 VKEKDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYH 66 K VV H+ + G+LRSGDR+ ++ L VS P++EA V LE DG+V+ + H Sbjct 10 TKTSTLVVEHVQREIFEGRLRSGDRIYVERLSAALDVSPTPVREAFVLLERDGLVTAQVH 69 Query 67 RGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKE-SRAF 125 R ++ FD T+ + + G L G+A+AR A + P +L QL +++ +L +S + Sbjct 70 RATLVQHFDARTLRADYHILGYLGGVAAARVAEDRGPEVLDQLTSLLDALADSGGLAGRR 129 Query 126 AECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSR---DDVLPFYEEENAAI 182 + E R + A PRL +R + W ++ R +D++ + + AI Sbjct 130 RDLATEILRVQHRAGATPRLLEELRGQGRFLG---WAAGESERRRHEDIVDAHRQVIEAI 186 Query 183 HRREPEAARAACIGRSELMAQTMLAELFRRRVL 215 +P A A + + + ++ EL RR VL Sbjct 187 IAGDPWRASQARVAEAAAAGEQVIHELTRRGVL 219 >gi|262204026|ref|YP_003275234.1| GntR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262087373|gb|ACY23341.1| regulatory protein GntR HTH [Gordonia bronchialis DSM 43247] Length=222 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/152 (30%), Positives = 81/152 (54%), Gaps = 0/152 (0%) Query 10 KDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGA 69 K + I + G++R G +VD++ IA LG+S++P++EAL+ L+ +GI+ RGA Sbjct 14 KQRAAQEIRRRIFAGEMRPGSKVDQDAIAADLGISKLPVREALIALDGEGIIQVAPRRGA 73 Query 70 FIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECV 129 F+ + +H+ + GL++GIA+ RA A+ T + LD + ++ + + Sbjct 74 FVAELSREDVRDHYWMFGLISGIAAERAVAHLTENDIAALDDLATAMESEASGTSRDGLN 133 Query 130 WEYRRTVNDEYAGPRLHATIRASQNLIPRVFW 161 E+ R +N RL A ++ N IP F+ Sbjct 134 NEFHRIINRAAGSRRLLAELKLLSNAIPDGFY 165 >gi|337277692|ref|YP_004617163.1| GntR family transcriptional regulator [Ramlibacter tataouinensis TTB310] gi|334728768|gb|AEG91144.1| transcriptional regulator, GntR family-like protein [Ramlibacter tataouinensis TTB310] Length=233 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/108 (38%), Positives = 69/108 (64%), Gaps = 3/108 (2%) Query 17 ILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDV 76 +L ++L G++R+G+R++ ++A LGVSRVP++EAL +L+ G+V R H G F+ R D Sbjct 25 VLGMILRGEIRAGERINEPDVAQRLGVSRVPVREALRELQSSGLVEARKHAGVFVRRLDA 84 Query 77 ATILEHHELDGLLNGIASARAAANPTP---RILGQLDAVMRSLRNSKE 121 A + +EL LL+G A RAA P P + +LDA + +++ + + Sbjct 85 AEVRGLYELRALLDGFAGRRAAQLPAPARTALAARLDASIDAMQAAAD 132 >gi|302526481|ref|ZP_07278823.1| predicted protein [Streptomyces sp. AA4] gi|302435376|gb|EFL07192.1| predicted protein [Streptomyces sp. AA4] Length=231 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/166 (28%), Positives = 90/166 (55%), Gaps = 1/166 (0%) Query 2 PKKYGVKEKDQVVAH-ILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGI 60 P++ G + AH I + +G+LR+G+++D+ +A LG+S++PI+EAL+ L+H+G+ Sbjct 15 PRRGGPANLKSLAAHEIRRRVFSGQLRAGEKIDQEALADELGISKLPIREALITLDHEGV 74 Query 61 VSTRYHRGAFIERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSK 120 V RGAF+ + I +H+ + GL++G+A+ RAA N +P L L + + + Sbjct 75 VEHIARRGAFVAQMTRDDIRDHYRVFGLVSGLAAERAAKNLSPESLQALHDLADRMESGV 134 Query 121 ESRAFAECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQN 166 + +++ R +N RL + + + F+ +++ Sbjct 135 DRAEQERLNFDFHRRINYAADSRRLVSILGILAKTVTHGFYEAHED 180 >gi|302527302|ref|ZP_07279644.1| predicted protein [Streptomyces sp. AA4] gi|302436197|gb|EFL08013.1| predicted protein [Streptomyces sp. AA4] Length=225 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 86/154 (56%), Gaps = 4/154 (2%) Query 21 LLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDVATIL 80 + +G+LR+G ++D+ +A LG+S++P++EAL+ L+H+G+V RGAF+ R I Sbjct 29 VFSGQLRAGAKIDQEALADELGISKLPVREALITLDHEGVVEHIARRGAFVARMTRDDIR 88 Query 81 EHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWEYRRTVNDEY 140 +H+ + G+++G+A+ RAA N +P L L + + ++ + +E+ R +N Sbjct 89 DHYRVFGVVSGLAAERAAKNLSPESLQALHDLADRMESAVDRAEQERLNYEFHRRINYAA 148 Query 141 AGPRLHATIRASQNLIPRVFWMTYQN----SRDD 170 RL + + + F+ +++ +RDD Sbjct 149 DSRRLLSLLGILAKTVSHGFYEAHEDWPAKARDD 182 >gi|288919460|ref|ZP_06413792.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288349154|gb|EFC83399.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=270 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/188 (28%), Positives = 93/188 (50%), Gaps = 3/188 (1%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 D+V AH+ +L+++G++ G + +++A LGVS P++EALV+L + +V RG Sbjct 49 DEVAAHLRDLIMSGEIWPGQYIRLDDVARELGVSVTPVREALVRLRSEDMVELEPRRGYV 108 Query 71 IERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECV- 129 + + + L G + G +ARAA P L QL + ++LRN+ ++ + Sbjct 109 VTPLSQQDVRDLFNLQGHIAGELAARAATTIDPPHLTQLHDIQQALRNAVDTEDIDQVKK 168 Query 130 --WEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREP 187 +E+ R +N +L + + P F+ T Q R D+L ++ A+ + Sbjct 169 LEFEFHRVINRLAHARKLSWFLHTANRYTPARFYSTDQAWRADMLQRHDALLTALENKNT 228 Query 188 EAARAACI 195 E ARA + Sbjct 229 EEARAITV 236 >gi|288919213|ref|ZP_06413550.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] gi|288349383|gb|EFC83623.1| transcriptional regulator, GntR family [Frankia sp. EUN1f] Length=231 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/188 (28%), Positives = 93/188 (50%), Gaps = 3/188 (1%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 D+V AH+ +L+++G++ G + +++A LGVS P++EALV+L + +V RG Sbjct 24 DEVAAHLRDLIMSGEIWPGQYIRLDDVARELGVSVTPVREALVRLRSEDMVELEPRRGYV 83 Query 71 IERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESR---AFAE 127 + + + L G + G +ARAA P L QL + ++LRN+ ++ + Sbjct 84 VTPLSQQDVRDLFNLQGHIAGELAARAATTIDPPHLTQLHDIQQALRNAVDTENVDQIEQ 143 Query 128 CVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREP 187 +E+ R +N +L + + P F+ T Q R D+L ++ A+ + Sbjct 144 LEFEFHRVINRLAHARKLSWFLHTANRYTPARFYSTDQAWRADMLQRHDALLTALENKNT 203 Query 188 EAARAACI 195 E ARA + Sbjct 204 EEARAITV 211 >gi|118473927|ref|YP_890848.1| GntR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118175214|gb|ABK76110.1| transcriptional regulator, GntR family protein, putative [Mycobacterium smegmatis str. MC2 155] Length=225 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/171 (29%), Positives = 82/171 (48%), Gaps = 0/171 (0%) Query 21 LLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDVATIL 80 +LTG L +G R+D + I SR P++EAL++L +G+V G + A +L Sbjct 22 ILTGALPAGTRIDLDAITAEFATSRTPVREALLELSFEGLVRVAPRSGITVIGISSADVL 81 Query 81 EHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWEYRRTVNDEY 140 + + G+L G A+A AA T L QL A+ + A E W + + ++ Sbjct 82 DSFTILGVLTGQAAAWAAERVTDEELDQLRALAAGVAEHSGDDAIGEANWRFHQAIHRAA 141 Query 141 AGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREPEAAR 191 PRL A I+ + ++P F + + L +EE A+ +R+ + AR Sbjct 142 HSPRLLAAIKQAARVVPTNFLVLFPEHEKHSLSEHEELLDALEKRDADHAR 192 >gi|284045536|ref|YP_003395876.1| GntR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949757|gb|ADB52501.1| transcriptional regulator, GntR family [Conexibacter woesei DSM 14684] Length=231 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/134 (31%), Positives = 76/134 (57%), Gaps = 1/134 (0%) Query 29 GDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDVATILEHHELDGL 88 G+R+ ++++A LGVSR+P++ AL+QLE +G+++ +RGA + V + E++E+ + Sbjct 46 GERLRQDQLAEELGVSRIPVRSALLQLETEGMITLHPYRGATVSELSVDEMRENYEIRAV 105 Query 89 LNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWEYRRTVNDEYAGPRLHAT 148 L G+A +AAA TP L L + + L + ++ F + + D + P+L A Sbjct 106 LEGLALRKAAAAMTPERLAHLKKLAQELNDERDGEVFLRLRMSFYHELYDGDSHPQLVAL 165 Query 149 IRASQNLIPRVFWM 162 I +N R +W+ Sbjct 166 IEKLRNDAGR-YWL 178 >gi|156742519|ref|YP_001432648.1| GntR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233847|gb|ABU58630.1| transcriptional regulator, GntR family [Roseiflexus castenholzii DSM 13941] Length=245 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 101/200 (51%), Gaps = 22/200 (11%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 +QV+A + +++L+G+L G R+D+NE+A GVS VP++EAL +L+ G+V HRG F Sbjct 11 EQVMARLRDMILSGELAPGSRLDQNELARRFGVSLVPLREALARLQSRGLVRIVPHRGVF 70 Query 71 IERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAV---MRSLRNSKESRAFAE 127 +E V +L+ +++ L +A+ AA T L LD + M + AF + Sbjct 71 VESLSVEELLDIYQVREALEELAARLAAPRLTVADLATLDRLKIEMEQTATIDDFDAFLD 130 Query 128 CVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAI----- 182 E+ T+ A R H LI +++ ++ + R + F E A++ Sbjct 131 LHREFHFTIY--RAAGRRHLV-----QLIAQLWDLSARYRRFQLYAFPERARASLFEIQA 183 Query 183 -----HRREPEAARAACIGR 197 HRR+P+A AC+ R Sbjct 184 ILDACHRRDPDA--LACMVR 201 >gi|312196726|ref|YP_004016787.1| GntR family transcriptional regulator [Frankia sp. EuI1c] gi|311228062|gb|ADP80917.1| transcriptional regulator, GntR family [Frankia sp. EuI1c] Length=233 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/149 (31%), Positives = 81/149 (55%), Gaps = 10/149 (6%) Query 21 LLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYH---RGAFIERFDVA 77 +L G+ R GD V ++ +A GVS +P++EAL+ L H+G++ + + R A + R DV Sbjct 29 ILFGRRRQGDPVTQSAVAQQFGVSTMPVREALLALAHEGMIGAKANYTFRVARMSRRDVE 88 Query 78 TILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLR---NSKESRAFAECVWEYRR 134 I H GLL G + RA TP ++ QL+++ + ++ + + W++ R Sbjct 89 DIYWTH---GLLAGKLAERATTLATPALVEQLESIQQRFEAALDANDMDSVEYYNWQFHR 145 Query 135 TVNDEYAGPRLHATIRASQNLIPR-VFWM 162 VN P++ AT+R+ IP+ ++W+ Sbjct 146 AVNHAADSPKILATLRSVVVQIPKHIYWL 174 >gi|295695888|ref|YP_003589126.1| GntR family transcriptional regulator [Bacillus tusciae DSM 2912] gi|295411490|gb|ADG05982.1| transcriptional regulator, GntR family [Bacillus tusciae DSM 2912] Length=215 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/138 (31%), Positives = 76/138 (56%), Gaps = 3/138 (2%) Query 10 KDQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGA 69 ++QV A + + +G+L+ G + + EIA+ LG+SR+P++EA L+ DG++S + HR A Sbjct 10 REQVAAILRKAIFSGELKPGQELVQEEIANQLGISRMPVREAFQILQRDGLISLQSHRKA 69 Query 70 FIERFDVATILEHHELDGLLNGIASARAAANPT--PRILGQLDAVMRSLRNSKESRAFAE 127 + I +H+E+ LL G A+ARAA +P IL + ++ + + + F Sbjct 70 VVRVLTDDEISDHYEIRALLEGEAAARAAKHPGDHEEILSAFEDTVK-MADQGSTSEFVS 128 Query 128 CVWEYRRTVNDEYAGPRL 145 + R++ + PRL Sbjct 129 ANEAFHRSIWEASHSPRL 146 >gi|345040019|gb|EGW44314.1| hypothetical protein HMPREF0178_02864 [Bilophila sp. 4_1_30] Length=236 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/209 (30%), Positives = 91/209 (44%), Gaps = 11/209 (5%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 +QVV I + GKLRSGDR+ IA G+SR P++EAL QLE +G + + RG Sbjct 11 EQVVNLIRQRIRNGKLRSGDRISEASIAEECGISRAPVREALYQLETEGFLMSHPKRGKC 70 Query 71 IERFDVATILEHHELDGLLNGIASARAAAN----PTPRILGQLDAVMRSLRNSKESRAFA 126 + I +EL GLL G A+A N P + LD + + + + A Sbjct 71 VTLLTGDGIRHRYELCGLLEGAAAANVVLNLPTGPWEELEALLDRMKQGVLSGTSFEDHA 130 Query 127 ECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENA---AIH 183 + T+ + + P L A R+S +I + + ++ N+ A Sbjct 131 ALGTAFHETILERASNPLLIAIARSSCRVISKYLMFQQWRTLYTTEELFQRHNSMYEAFL 190 Query 184 RREP----EAARAACIGRSELMAQTMLAE 208 R P EA RA +E +AQ AE Sbjct 191 TRNPYTIEEAVRAHYADSAERLAQICEAE 219 >gi|333990986|ref|YP_004523600.1| GntR family transcriptional regulator [Mycobacterium sp. JDM601] gi|333486954|gb|AEF36346.1| GntR family transcriptional regulator [Mycobacterium sp. JDM601] Length=218 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/174 (28%), Positives = 84/174 (49%), Gaps = 0/174 (0%) Query 19 NLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDVAT 78 N +LTG+L G R+D + I SR P++EAL++L ++G+V G + Sbjct 22 NRILTGELAPGTRLDLDAITAEFATSRTPVREALLELSYEGLVQVAPRSGVTVIGIRPED 81 Query 79 ILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWEYRRTVND 138 +L+ + G+L G A+A AA TP + L + + + S + W++ + ++ Sbjct 82 VLDSFTILGVLTGQAAAWAAERLTPDDVAHLRTLAADVEALRGSDRIGDANWQFHQEIHR 141 Query 139 EYAGPRLHATIRASQNLIPRVFWMTYQNSRDDVLPFYEEENAAIHRREPEAARA 192 P+L IR + ++P F + L +++ AA+ R+ EAARA Sbjct 142 AAHSPQLLIQIRHAARVVPTNFLTVFPEHEHHSLEDHQKLVAALAERDGEAARA 195 >gi|330809174|ref|YP_004353636.1| GntR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377282|gb|AEA68632.1| putative transcription factor, GntR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length=222 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/155 (31%), Positives = 79/155 (51%), Gaps = 11/155 (7%) Query 17 ILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDV 76 +L+ + G+LR GDR+ +IA+ +G+SR+P++EA +L+ G+V+ R +RGA + D+ Sbjct 23 LLDAICGGRLRKGDRLIAEDIANEIGMSRMPVREAFRRLDAQGLVTLRPNRGAIVSGLDI 82 Query 77 ATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECVWEYRRTV 136 + E E+ L G+A A A R L L+ ++ + + +E A W R Sbjct 83 DELHEVFEMRSALEGLAVRVATARIGERQLAALERLLDEMDDYREESA----EWVSRHRA 138 Query 137 NDEY-----AGPRLHATIRASQNLI--PRVFWMTY 164 EY PRL I A +LI P W+ + Sbjct 139 FHEYLCSLSGRPRLLKQISALYSLIEAPMRLWLQH 173 >gi|229820030|ref|YP_002881556.1| GntR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565943|gb|ACQ79794.1| transcriptional regulator, GntR family [Beutenbergia cavernae DSM 12333] Length=242 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/119 (35%), Positives = 63/119 (53%), Gaps = 0/119 (0%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 + VV + + TG+LR G+ + E+A L VSR P++EA LE +G V R HRGAF Sbjct 34 EYVVRELRERIATGELRPGEHLRETELAAALNVSRGPVREAFAILEAEGQVEIRRHRGAF 93 Query 71 IERFDVATILEHHELDGLLNGIASARAAANPTPRILGQLDAVMRSLRNSKESRAFAECV 129 + + E H L + +A+ RAA TP ++D V+ +++ + S A E V Sbjct 94 VSVLTRRDVEEVHTLRTAMEALAAERAATRLTPAHFAEMDRVLEAMKGTSGSVAPQEAV 152 >gi|317484029|ref|ZP_07942963.1| gntR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] gi|316924718|gb|EFV45870.1| gntR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] Length=236 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/210 (30%), Positives = 93/210 (45%), Gaps = 13/210 (6%) Query 11 DQVVAHILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAF 70 +QVV I + GKLRSGDR+ IA G+SR P++EAL QLE +G + + RG Sbjct 11 EQVVNLIRQRIRNGKLRSGDRISEASIAEECGISRAPVREALYQLETEGFLMSHPKRGKC 70 Query 71 IERFDVATILEHHELDGLLNGIASARAAAN----PTPRILGQLDAVMRSLRNSKESRAFA 126 + I +EL GLL G A+A + P + LD + + + + A Sbjct 71 VTLLTGDGIRHRYELCGLLEGAAAANVVLSLPKGPWEELEALLDRMKQGVLSGTSFEDHA 130 Query 127 ECVWEYRRTVNDEYAGPRLHATIRASQNLIPRVF----WMTYQNSRDDVLPFYEEENAAI 182 + T+ + + P L A R+S +I + W T + +++ + A Sbjct 131 ALGTAFHETILERASNPLLIAIARSSCRVISKYLMFQQWRTLYTT-EELFQRHNSMYEAF 189 Query 183 HRREP----EAARAACIGRSELMAQTMLAE 208 R P EA RA +E +AQ AE Sbjct 190 LTRNPYTIEEAVRAHYADSAERLAQICEAE 219 >gi|91787168|ref|YP_548120.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gi|91696393|gb|ABE43222.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length=234 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/106 (38%), Positives = 64/106 (61%), Gaps = 3/106 (2%) Query 17 ILNLLLTGKLRSGDRVDRNEIAHGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFIERFDV 76 +L L+L G L G R++ ++A L VSRVP++EAL +LE G+V +R H G F+ + D Sbjct 29 MLALILKGVLAPGQRINEPDVASRLQVSRVPVREALRELESSGLVVSRKHSGVFVRQLDA 88 Query 77 ATILEHHELDGLLNGIASARAAANPTPR---ILGQLDAVMRSLRNS 119 A I + +++ GLL+G A AA T + +L L A + ++R + Sbjct 89 AEIRDLYQMRGLLDGFAGRCAAGLATEQREALLALLTASVDTMREA 134 Lambda K H 0.321 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 340053351120 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40