BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0048c Length=289 Score E Sequences producing significant alignments: (Bits) Value gi|15607190|ref|NP_214562.1| hypothetical protein Rv0048c [Mycob... 573 9e-162 gi|289441416|ref|ZP_06431160.1| membrane protein [Mycobacterium ... 572 2e-161 gi|15839425|ref|NP_334462.1| hypothetical protein MT0054 [Mycoba... 570 7e-161 gi|31791225|ref|NP_853718.1| hypothetical protein Mb0049c [Mycob... 570 9e-161 gi|289445574|ref|ZP_06435318.1| membrane protein [Mycobacterium ... 569 2e-160 gi|240168778|ref|ZP_04747437.1| hypothetical protein MkanA1_0566... 476 1e-132 gi|183980102|ref|YP_001848393.1| hypothetical protein MMAR_0067 ... 465 3e-129 gi|118615978|ref|YP_904310.1| hypothetical protein MUL_0066 [Myc... 464 9e-129 gi|254820316|ref|ZP_05225317.1| hypothetical protein MintA_10326... 429 3e-118 gi|296167072|ref|ZP_06849483.1| conserved hypothetical protein [... 426 3e-117 gi|342860222|ref|ZP_08716874.1| hypothetical protein MCOL_15135 ... 412 2e-113 gi|41406160|ref|NP_958996.1| hypothetical protein MAP0062c [Myco... 409 2e-112 gi|118466212|ref|YP_879369.1| hypothetical protein MAV_0069 [Myc... 409 4e-112 gi|254233447|ref|ZP_04926773.1| hypothetical protein TBCG_00047 ... 387 7e-106 gi|333992953|ref|YP_004525567.1| hypothetical protein JDM601_431... 380 1e-103 gi|108802333|ref|YP_642530.1| hypothetical protein Mmcs_5374 [My... 301 5e-80 gi|126438313|ref|YP_001074004.1| hypothetical protein Mjls_5750 ... 300 1e-79 gi|118472468|ref|YP_891102.1| hypothetical protein MSMEG_6902 [M... 297 1e-78 gi|145221463|ref|YP_001132141.1| hypothetical protein Mflv_0869 ... 276 3e-72 gi|120406968|ref|YP_956797.1| hypothetical protein Mvan_6038 [My... 271 1e-70 gi|169631977|ref|YP_001705626.1| hypothetical protein MAB_4904 [... 165 1e-38 gi|169631978|ref|YP_001705627.1| hypothetical protein MAB_4905 [... 159 5e-37 gi|229494682|ref|ZP_04388440.1| conserved hypothetical protein [... 118 1e-24 gi|226362650|ref|YP_002780428.1| hypothetical protein ROP_32360 ... 114 2e-23 gi|226309330|ref|YP_002769290.1| hypothetical protein RER_58430 ... 113 3e-23 gi|226362652|ref|YP_002780430.1| hypothetical protein ROP_32380 ... 106 4e-21 gi|111020432|ref|YP_703404.1| hypothetical protein RHA1_ro03443 ... 105 9e-21 gi|111020434|ref|YP_703406.1| hypothetical protein RHA1_ro03445 ... 97.1 3e-18 gi|54027528|ref|YP_121770.1| hypothetical protein nfa55540 [Noca... 89.7 4e-16 gi|312141943|ref|YP_004009279.1| hypothetical protein REQ_46600 ... 81.6 1e-13 gi|226362651|ref|YP_002780429.1| hypothetical protein ROP_32370 ... 81.3 2e-13 gi|229494680|ref|ZP_04388438.1| conserved hypothetical protein [... 81.3 2e-13 gi|111020433|ref|YP_703405.1| hypothetical protein RHA1_ro03444 ... 79.3 6e-13 gi|312141940|ref|YP_004009276.1| membrane protein [Rhodococcus e... 77.4 2e-12 gi|325677398|ref|ZP_08157063.1| hypothetical protein HMPREF0724_... 75.1 1e-11 gi|312141942|ref|YP_004009278.1| hypothetical protein REQ_46590 ... 74.7 2e-11 gi|325677397|ref|ZP_08157062.1| hypothetical protein HMPREF0724_... 69.3 6e-10 gi|226309329|ref|YP_002769289.1| hypothetical protein RER_58420 ... 60.5 3e-07 gi|54027529|ref|YP_121771.1| hypothetical protein nfa55550 [Noca... 60.1 4e-07 gi|325675410|ref|ZP_08155094.1| hypothetical protein HMPREF0724_... 58.9 8e-07 gi|312140953|ref|YP_004008289.1| membrane protein [Rhodococcus e... 58.9 8e-07 gi|226309328|ref|YP_002769288.1| hypothetical protein RER_58410 ... 56.2 6e-06 gi|72160542|ref|YP_288199.1| hypothetical protein Tfu_0138 [Ther... 55.1 1e-05 gi|326331619|ref|ZP_08197907.1| hypothetical protein NBCG_03058 ... 54.3 2e-05 gi|325677399|ref|ZP_08157064.1| hypothetical protein HMPREF0724_... 53.9 3e-05 gi|325677400|ref|ZP_08157065.1| hypothetical protein HMPREF0724_... 52.8 6e-05 gi|229494666|ref|ZP_04388424.1| conserved hypothetical protein [... 52.8 6e-05 gi|297192341|ref|ZP_06909739.1| conserved hypothetical protein [... 52.8 6e-05 gi|256391079|ref|YP_003112643.1| hypothetical protein Caci_1882 ... 52.4 9e-05 gi|312141941|ref|YP_004009277.1| hypothetical protein REQ_46580 ... 52.0 1e-04 >gi|15607190|ref|NP_214562.1| hypothetical protein Rv0048c [Mycobacterium tuberculosis H37Rv] gi|148659808|ref|YP_001281331.1| hypothetical protein MRA_0051 [Mycobacterium tuberculosis H37Ra] gi|148821238|ref|YP_001285992.1| hypothetical protein TBFG_10047 [Mycobacterium tuberculosis F11] 41 more sequence titles Length=289 Score = 573 bits (1478), Expect = 9e-162, Method: Compositional matrix adjust. Identities = 288/289 (99%), Positives = 289/289 (100%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF Sbjct 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD Sbjct 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV Sbjct 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS Sbjct 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 >gi|289441416|ref|ZP_06431160.1| membrane protein [Mycobacterium tuberculosis T46] gi|289567934|ref|ZP_06448161.1| membrane protein [Mycobacterium tuberculosis T17] gi|289572624|ref|ZP_06452851.1| membrane protein [Mycobacterium tuberculosis K85] 21 more sequence titles Length=289 Score = 572 bits (1474), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 287/289 (99%), Positives = 288/289 (99%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF Sbjct 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD Sbjct 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV Sbjct 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 KSMYLIVEP KDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS Sbjct 241 KSMYLIVEPAKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 >gi|15839425|ref|NP_334462.1| hypothetical protein MT0054 [Mycobacterium tuberculosis CDC1551] gi|254366506|ref|ZP_04982550.1| membrane protein [Mycobacterium tuberculosis str. Haarlem] gi|13879097|gb|AAK44276.1| hypothetical protein MT0054 [Mycobacterium tuberculosis CDC1551] gi|134152018|gb|EBA44063.1| membrane protein [Mycobacterium tuberculosis str. Haarlem] gi|323717387|gb|EGB26592.1| membrane protein [Mycobacterium tuberculosis CDC1551A] Length=289 Score = 570 bits (1470), Expect = 7e-161, Method: Compositional matrix adjust. Identities = 286/289 (99%), Positives = 288/289 (99%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF Sbjct 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD Sbjct 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV Sbjct 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 KSMYLIV+P KDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS Sbjct 241 KSMYLIVDPAKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 >gi|31791225|ref|NP_853718.1| hypothetical protein Mb0049c [Mycobacterium bovis AF2122/97] gi|121635958|ref|YP_976181.1| hypothetical protein BCG_0079c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988431|ref|YP_002643098.1| hypothetical protein JTY_0049 [Mycobacterium bovis BCG str. Tokyo 172] gi|31616810|emb|CAD92911.1| POSSIBLE MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] gi|121491605|emb|CAL70063.1| Possible membrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771544|dbj|BAH24350.1| hypothetical protein JTY_0049 [Mycobacterium bovis BCG str. Tokyo 172] gi|341599974|emb|CCC62642.1| possible membrane protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=289 Score = 570 bits (1469), Expect = 9e-161, Method: Compositional matrix adjust. Identities = 286/289 (99%), Positives = 287/289 (99%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF Sbjct 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD Sbjct 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAV IMRGAPETLGLKQSDV Sbjct 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVSIMRGAPETLGLKQSDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 KSMYLIVEP KDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS Sbjct 241 KSMYLIVEPAKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 >gi|289445574|ref|ZP_06435318.1| membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289418532|gb|EFD15733.1| membrane protein [Mycobacterium tuberculosis CPHL_A] Length=289 Score = 569 bits (1466), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 286/289 (99%), Positives = 287/289 (99%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF Sbjct 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD Sbjct 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV Sbjct 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 KSMYLIVEP KDPTTPAALSLSLYVSSD GGGYLVFAGDGTIKHVSYPS Sbjct 241 KSMYLIVEPAKDPTTPAALSLSLYVSSDCGGGYLVFAGDGTIKHVSYPS 289 >gi|240168778|ref|ZP_04747437.1| hypothetical protein MkanA1_05665 [Mycobacterium kansasii ATCC 12478] Length=289 Score = 476 bits (1226), Expect = 1e-132, Method: Compositional matrix adjust. Identities = 234/289 (81%), Positives = 257/289 (89%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARG ST TRAKDSDRQDAC+ILD AL DG+LSMEEHR+RVS ATKAVTLGD Sbjct 1 MAKWLGAPLARGGSTTTRAKDSDRQDACQILDAALNDGQLSMEEHRDRVSTATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQ L+ADLQ E APA++PALKSRA+R LGLL AAF SVLLGVGIGWG+YGNT SPLDF Sbjct 61 LQDLIADLQSERAPAEVPALKSRARRNGLGLLVAAFGVSVLLGVGIGWGLYGNTSSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 T+DPGAKPDG+A VVLTPP+QLHSLGGLTGLLEQTRKRFGDTMGYRLVIYP YA LDR D Sbjct 121 TTDPGAKPDGVAAVVLTPPKQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPTYAVLDRKD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PADDRRVL+YTYRGGWGD TSSAKS D S+VDL KFD K VGIMRGA ETLG+K SDV Sbjct 181 PADDRRVLSYTYRGGWGDPTSSAKSGTDGSLVDLGKFDVKATVGIMRGAAETLGMKPSDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 +MYL+++P +DPTTP ALSLS+YVSSDYGGGY+VFAGDGT+K VSYPS Sbjct 241 TNMYLVIDPAEDPTTPGALSLSVYVSSDYGGGYIVFAGDGTVKQVSYPS 289 >gi|183980102|ref|YP_001848393.1| hypothetical protein MMAR_0067 [Mycobacterium marinum M] gi|183173428|gb|ACC38538.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=289 Score = 465 bits (1197), Expect = 3e-129, Method: Compositional matrix adjust. Identities = 224/289 (78%), Positives = 252/289 (88%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGA LARG S ATRAKD+DRQDAC+ILD AL DG+LSMEEHR+RV+ AT+AVTLGD Sbjct 1 MAKWLGASLARGGSAATRAKDTDRQDACQILDSALSDGQLSMEEHRQRVATATQAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQ LVADLQ ESAPA++PALKSR +R LGLLAAA S+LLGV IGWG+YGNTRSPLDF Sbjct 61 LQHLVADLQSESAPAEVPALKSRGQRNSLGLLAAALGVSILLGVAIGWGLYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 T+DPGAKPDG+A VVLTPP+QLHSLGGLTGLLEQTRKRFGDTMGYR+VIYPEYA LDR D Sbjct 121 TTDPGAKPDGVAAVVLTPPKQLHSLGGLTGLLEQTRKRFGDTMGYRMVIYPEYAVLDRKD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PAD+RR+L+YTYRGGWGD T SA+S AD ++VDL KFD KTAVGIMRGA ETLG+K DV Sbjct 181 PADERRILSYTYRGGWGDPTGSARSGADTALVDLGKFDVKTAVGIMRGAAETLGMKPKDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 +MYL + P DPTTP A+SL LYVSSDYG GY+ FAGDGTIK V+YPS Sbjct 241 TNMYLSINPASDPTTPGAISLQLYVSSDYGSGYIAFAGDGTIKQVNYPS 289 >gi|118615978|ref|YP_904310.1| hypothetical protein MUL_0066 [Mycobacterium ulcerans Agy99] gi|118568088|gb|ABL02839.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=289 Score = 464 bits (1193), Expect = 9e-129, Method: Compositional matrix adjust. Identities = 223/289 (78%), Positives = 252/289 (88%), Gaps = 0/289 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGA LARG S ATRAKD+DRQDAC+ILD AL DG+LSMEEHR+RV+ AT+AVTLGD Sbjct 1 MAKWLGASLARGGSAATRAKDTDRQDACQILDSALSDGQLSMEEHRQRVATATQAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQ+LVADLQ ESAPA++PALKSR +R LGLLAAA S+LLGV IGWG+YGNTRSPLDF Sbjct 61 LQQLVADLQSESAPAEVPALKSRGQRNSLGLLAAALGVSILLGVAIGWGLYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 T+DPGAKPDG+A VVLTPP+QLHSLGGLTGLLEQTRKRFGDTMGYR+VIYPEYA LDR D Sbjct 121 TTDPGAKPDGVAAVVLTPPKQLHSLGGLTGLLEQTRKRFGDTMGYRMVIYPEYAVLDRKD 180 Query 181 PADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 PAD+RR+L+YTYRGGWGD T SA+S AD ++VDL KFD KTAVGIMRGA ETLG+K DV Sbjct 181 PADERRILSYTYRGGWGDPTGSARSGADTALVDLGKFDVKTAVGIMRGAAETLGMKPKDV 240 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 +MYL + P DPTTP A+SL LYVSSDYG GY+ FAGD TIK V+YPS Sbjct 241 TNMYLSINPASDPTTPGAISLQLYVSSDYGSGYIAFAGDSTIKQVNYPS 289 >gi|254820316|ref|ZP_05225317.1| hypothetical protein MintA_10326 [Mycobacterium intracellulare ATCC 13950] Length=292 Score = 429 bits (1103), Expect = 3e-118, Method: Compositional matrix adjust. Identities = 218/293 (75%), Positives = 245/293 (84%), Gaps = 5/293 (1%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLG PLA G++ TRA+DSDRQD C ILD+AL DGE+S EEHRERVSAATKAVTLGD Sbjct 1 MAKWLGTPLAGGLTATTRARDSDRQDTCTILDNALSDGEVSAEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTEL---GLLAAAFVASVLLGVGIGWGVYGNTRSP 117 LQ LV DLQ + ++ AL SR +R L G AAAFV SVLLG+GIGWG+YGNTRSP Sbjct 61 LQALVRDLQSNTG-RELTALDSRPRRPRLAGWGAPAAAFVVSVLLGMGIGWGLYGNTRSP 119 Query 118 LDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLD 177 LDFT+DPGAKPDG+A VVLTPP QLHS+GGLTGLLEQ RKRFGDTMGYRLVIYP YA+LD Sbjct 120 LDFTTDPGAKPDGVAAVVLTPPTQLHSVGGLTGLLEQMRKRFGDTMGYRLVIYPTYAALD 179 Query 178 RVDPADDRRVLAYTYRGGWGDATSSAKSIAD-VSVVDLSKFDAKTAVGIMRGAPETLGLK 236 R DP+DDRR+LAYTYRGGWGD TSSAKS +D + VDLSKFD AVGIMRGAP+TL +K Sbjct 180 RPDPSDDRRILAYTYRGGWGDPTSSAKSSSDGPAPVDLSKFDVNAAVGIMRGAPQTLRMK 239 Query 237 QSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 SDVKS YLIVEP KDPTTP AL+LSLYVSSDYGGGY+ F GDGT+K +S P+ Sbjct 240 PSDVKSTYLIVEPAKDPTTPGALTLSLYVSSDYGGGYIAFGGDGTVKQMSLPT 292 >gi|296167072|ref|ZP_06849483.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897562|gb|EFG77157.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=297 Score = 426 bits (1094), Expect = 3e-117, Method: Compositional matrix adjust. Identities = 219/297 (74%), Positives = 245/297 (83%), Gaps = 8/297 (2%) Query 1 VAKWLGAPLARGVSTA----TRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAV 56 +AKWLG L +T+ TRAKD +RQDACRILD+AL DGELSMEEHRERVSAATKAV Sbjct 1 MAKWLGTSLGGAATTSGGAGTRAKDINRQDACRILDNALNDGELSMEEHRERVSAATKAV 60 Query 57 TLGDLQRLVADLQVESAPAQMPALKSR---AKRTELGLLAAAFVASVLLGVGIGWGVYGN 113 TLGDLQ LV DLQ +S P+ ++R A+ G LAAAFV SVLLGVGIGWG+YGN Sbjct 61 TLGDLQALVTDLQTDSTALHPPSAEARPVPARLRGWGPLAAAFVVSVLLGVGIGWGLYGN 120 Query 114 TRSPLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEY 173 TRSPLDFT+DPGAKPDG+AP+VLTPP QLHS+GGLTGLLEQTRKRFGDT+GYRLVIYP Y Sbjct 121 TRSPLDFTTDPGAKPDGVAPLVLTPPTQLHSVGGLTGLLEQTRKRFGDTVGYRLVIYPTY 180 Query 174 ASLDRVDPADDRRVLAYTYRGGWGDATSSAKSIAD-VSVVDLSKFDAKTAVGIMRGAPET 232 A LDR DP+DDRRVLAYTYRGGWGD TSSAKS AD + VDLSKFD VGIMRGAP+T Sbjct 181 AVLDRPDPSDDRRVLAYTYRGGWGDPTSSAKSSADGPAPVDLSKFDVTATVGIMRGAPQT 240 Query 233 LGLKQSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 L +K SDVK+ YL +EP DPTTP ALSLSLYVSSDYGGGY+VFAGDGT+K ++ PS Sbjct 241 LHMKPSDVKTEYLNIEPATDPTTPGALSLSLYVSSDYGGGYIVFAGDGTVKRLNLPS 297 >gi|342860222|ref|ZP_08716874.1| hypothetical protein MCOL_15135 [Mycobacterium colombiense CECT 3035] gi|342132600|gb|EGT85829.1| hypothetical protein MCOL_15135 [Mycobacterium colombiense CECT 3035] Length=293 Score = 412 bits (1060), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 210/294 (72%), Positives = 236/294 (81%), Gaps = 6/294 (2%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPL G +T TRAKDSDRQDAC +LDDAL DGELS EEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLGGGATTTTRAKDSDRQDACTVLDDALADGELSAEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTE----LGLLAAAFVASVLLGVGIGWGVYGNTRS 116 L LV DLQ +A Q+PA+ SR K + AAAFV SVLLG+GIGWG+YGNTRS Sbjct 61 LHTLVNDLQT-NAGRQLPAVDSRPKMLPRVGGWWVPAAAFVVSVLLGIGIGWGLYGNTRS 119 Query 117 PLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASL 176 PLDFT+DPGAKPDG+ VVLT P QLHS+GGLTGL EQ RKR GDTMGYRLVIYP YA L Sbjct 120 PLDFTTDPGAKPDGVGAVVLTAPTQLHSVGGLTGLFEQMRKRLGDTMGYRLVIYPTYAVL 179 Query 177 DRVDPADDRRVLAYTYRGGWGDATSSAKSIADVSV-VDLSKFDAKTAVGIMRGAPETLGL 235 DR DP+DDRR+LAYTYRGGWGD TSSAK +D + DLSKFD VGIMRGAPETL + Sbjct 180 DRPDPSDDRRMLAYTYRGGWGDPTSSAKGSSDAAAPADLSKFDVTKTVGIMRGAPETLHM 239 Query 236 KQSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 + +DVK+ YLI+EP DPTTP ALSLSLYVSSDYGGG++ FAGDG +K +S P+ Sbjct 240 RPADVKTTYLIIEPATDPTTPGALSLSLYVSSDYGGGHITFAGDGAVKEMSLPT 293 >gi|41406160|ref|NP_958996.1| hypothetical protein MAP0062c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394508|gb|AAS02379.1| hypothetical protein MAP_0062c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459422|gb|EGO38364.1| protein of unknown function (DUF1707) [Mycobacterium avium subsp. paratuberculosis S397] Length=294 Score = 409 bits (1052), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 210/294 (72%), Positives = 231/294 (79%), Gaps = 5/294 (1%) Query 1 VAKWLGAPLARGVS----TATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAV 56 +AKWLG P A +TRAKDSDRQ C ILD+AL DGELS EEHRERVSAATKAV Sbjct 1 MAKWLGTPPAGTAPPSGRASTRAKDSDRQSTCTILDNALTDGELSAEEHRERVSAATKAV 60 Query 57 TLGDLQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRS 116 TLGDLQ LV DLQ P + + G LAAAFV SVLLG+GIGWG+YGNT S Sbjct 61 TLGDLQTLVCDLQTGPQPPALDPSPPSGRVRGWGTLAAAFVVSVLLGIGIGWGLYGNTSS 120 Query 117 PLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASL 176 PLDFTSDPGAKPDG+ VVLTPP QLHS+GGLTGLLEQ RKRFG T+GYRLVIYP YA+L Sbjct 121 PLDFTSDPGAKPDGVNAVVLTPPTQLHSVGGLTGLLEQMRKRFGSTLGYRLVIYPTYAAL 180 Query 177 DRVDPADDRRVLAYTYRGGWGDATSSAKSIADVSV-VDLSKFDAKTAVGIMRGAPETLGL 235 DR DP+DDRRVLAYTYRGGWGD TSSAKS +D V VDLSKFD AVGIMRGAPETL + Sbjct 181 DRPDPSDDRRVLAYTYRGGWGDPTSSAKSSSDGPVPVDLSKFDVTAAVGIMRGAPETLRM 240 Query 236 KQSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 K SDVK+ YLIVEP DPTTP ALSLS+YVSSDYGGGY+ F GDGT+K ++ P+ Sbjct 241 KPSDVKTSYLIVEPATDPTTPGALSLSVYVSSDYGGGYIAFTGDGTVKQMNLPT 294 >gi|118466212|ref|YP_879369.1| hypothetical protein MAV_0069 [Mycobacterium avium 104] gi|254773114|ref|ZP_05214630.1| hypothetical protein MaviaA2_00311 [Mycobacterium avium subsp. avium ATCC 25291] gi|48928152|gb|AAT47754.1| possible membrane protein [Mycobacterium avium] gi|118167499|gb|ABK68396.1| putative membrane protein [Mycobacterium avium 104] Length=294 Score = 409 bits (1050), Expect = 4e-112, Method: Compositional matrix adjust. Identities = 209/294 (72%), Positives = 231/294 (79%), Gaps = 5/294 (1%) Query 1 VAKWLGAPLARGVS----TATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAV 56 +AKWLG P A +TRAKDSDRQ C ILD+AL DGELS EEHRERVSAAT+AV Sbjct 1 MAKWLGTPPAGTAPPSGRASTRAKDSDRQSTCTILDNALNDGELSAEEHRERVSAATRAV 60 Query 57 TLGDLQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRS 116 TLGDLQ LV DLQ P + + G LAAAFV SVLLG+GIGWG+YGNT S Sbjct 61 TLGDLQTLVCDLQTGPQPPALDPSPPSGRVRGWGTLAAAFVVSVLLGIGIGWGLYGNTSS 120 Query 117 PLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASL 176 PLDFTSDPGAKPDG+ VVLTPP QLHS+GGLTGLLEQ RKRFG T+GYRLVIYP YA+L Sbjct 121 PLDFTSDPGAKPDGVNAVVLTPPTQLHSVGGLTGLLEQMRKRFGSTLGYRLVIYPTYAAL 180 Query 177 DRVDPADDRRVLAYTYRGGWGDATSSAKSIADVSV-VDLSKFDAKTAVGIMRGAPETLGL 235 DR DP+DDRRVLAYTYRGGWGD TSSAKS +D V VDLSKFD AVGIMRGAPETL + Sbjct 181 DRPDPSDDRRVLAYTYRGGWGDPTSSAKSSSDGPVLVDLSKFDVTAAVGIMRGAPETLRM 240 Query 236 KQSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 K SDVK+ YLIVEP DPTTP ALSLS+YVSSDYGGGY+ F GDGT+K ++ P+ Sbjct 241 KPSDVKTSYLIVEPATDPTTPGALSLSVYVSSDYGGGYIAFTGDGTVKQMNLPT 294 >gi|254233447|ref|ZP_04926773.1| hypothetical protein TBCG_00047 [Mycobacterium tuberculosis C] gi|124603240|gb|EAY61515.1| hypothetical protein TBCG_00047 [Mycobacterium tuberculosis C] Length=290 Score = 387 bits (995), Expect = 7e-106, Method: Compositional matrix adjust. Identities = 193/194 (99%), Positives = 194/194 (100%), Gaps = 0/194 (0%) Query 1 VAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 +AKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD Sbjct 1 MAKWLGAPLARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGD 60 Query 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF Sbjct 61 LQRLVADLQVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDF 120 Query 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD Sbjct 121 TSDPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVD 180 Query 181 PADDRRVLAYTYRG 194 PADDRRVLAYTYRG Sbjct 181 PADDRRVLAYTYRG 194 >gi|333992953|ref|YP_004525567.1| hypothetical protein JDM601_4313 [Mycobacterium sp. JDM601] gi|333488921|gb|AEF38313.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=280 Score = 380 bits (976), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 197/276 (72%), Positives = 228/276 (83%), Gaps = 1/276 (0%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 S+ TRAKDSDR D CRILD AL +G+LS EEHRERVSAAT+AVTLGDL L+ADLQ SA Sbjct 6 SSGTRAKDSDRDDVCRILDAALAEGQLSSEEHRERVSAATRAVTLGDLHSLIADLQTASA 65 Query 74 PAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAP 133 P Q+PAL + AAA A+VLLG+GIGWGVYGNT SPL FTSDPGAKPDG+AP Sbjct 66 PVQLPALNKPVGFGGRAVAAAALGAAVLLGLGIGWGVYGNTSSPLSFTSDPGAKPDGVAP 125 Query 134 VVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYR 193 +VLTPPR+LHSLGGL+GLLEQ R +FGDT+GYRLV+YP+YASL R DP +DRR L Y+YR Sbjct 126 LVLTPPRRLHSLGGLSGLLEQARAKFGDTLGYRLVVYPDYASLTRADPTEDRRELDYSYR 185 Query 194 GGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKDP 253 GGWGD +SSAK+ V +VDLS FD K AVGI+RGAPETLG+K DVKS YLIVEP +DP Sbjct 186 GGWGDPSSSAKNSGAV-LVDLSGFDIKAAVGILRGAPETLGIKDGDVKSTYLIVEPARDP 244 Query 254 TTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 TTP ALSLS+YVSSDYGGGY+ FAGDG++K ++YPS Sbjct 245 TTPGALSLSVYVSSDYGGGYINFAGDGSVKRINYPS 280 >gi|108802333|ref|YP_642530.1| hypothetical protein Mmcs_5374 [Mycobacterium sp. MCS] gi|119871486|ref|YP_941438.1| hypothetical protein Mkms_5463 [Mycobacterium sp. KMS] gi|108772752|gb|ABG11474.1| protein of unknown function DUF1707 [Mycobacterium sp. MCS] gi|119697575|gb|ABL94648.1| protein of unknown function DUF1707 [Mycobacterium sp. KMS] Length=292 Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 159/283 (57%), Positives = 196/283 (70%), Gaps = 8/283 (2%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 + TRAKDSDR D C++LD AL +G+LSM EH ERV AAT A TLG+LQ LV+DLQ +A Sbjct 10 TAGTRAKDSDRNDICKVLDTALGEGQLSMTEHGERVKAATHAATLGELQALVSDLQTGNA 69 Query 74 PAQMPALKSRAKRTEL------GLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAK 127 P Q+P L SR +R L G+ AA V V+LG+ IGWG+YGNT SPLDF SDPGAK Sbjct 70 PVQLPDL-SRPRRPRLPLKAGWGVKAAMAVVLVVLGMCIGWGLYGNTSSPLDFQSDPGAK 128 Query 128 PDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRV 187 DGI PVVLTPPRQL SL GL GL EQ RKRFG TMGY L I + ASLDR DP+D+RR Sbjct 129 SDGIGPVVLTPPRQLQSLNGLNGLFEQMRKRFGSTMGYELDIRADTASLDRPDPSDNRRK 188 Query 188 LAYTYRGGWGDATSSAKSI-ADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLI 246 Y YRGGWGD S ++ +D +VDL+KFD + +G++RGAP+TLG+ ++DV +L Sbjct 189 QNYDYRGGWGDPWGSPSTLDSDDRLVDLAKFDFEKTLGVLRGAPDTLGMNRADVTDTWLR 248 Query 247 VEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 V P DP TP L+L + +SD+G G + DGT K + PS Sbjct 249 VGPSADPATPDLLTLEIIANSDFGTGRIELFPDGTTKAIWPPS 291 >gi|126438313|ref|YP_001074004.1| hypothetical protein Mjls_5750 [Mycobacterium sp. JLS] gi|126238113|gb|ABO01514.1| protein of unknown function DUF1707 [Mycobacterium sp. JLS] Length=292 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 158/283 (56%), Positives = 196/283 (70%), Gaps = 8/283 (2%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 + TRAKDSDR D C++LD AL +G+LSM EH ERV AAT A TLG+LQ LV+DLQ +A Sbjct 10 TAGTRAKDSDRNDICKVLDTALGEGQLSMTEHGERVKAATHAATLGELQALVSDLQTGNA 69 Query 74 PAQMPALKSRAKRTEL------GLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAK 127 P Q+P L SR +R L G+ AA V V+LG+ IGWG+YGNT SPLDF SDPGAK Sbjct 70 PVQLPDL-SRPRRPRLPLKAGWGVKAAMAVVLVVLGMCIGWGLYGNTSSPLDFQSDPGAK 128 Query 128 PDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRV 187 DGI PVVLTPPRQL SL GL GL EQ RKRFG TMGY L I + ASLDR DP+D+RR Sbjct 129 SDGIGPVVLTPPRQLQSLNGLNGLFEQMRKRFGSTMGYELDIRADTASLDRPDPSDNRRK 188 Query 188 LAYTYRGGWGDATSSAKSI-ADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLI 246 Y YRGGWGD S ++ +D +VDL++FD + +G++RGAP+TLG+ ++DV +L Sbjct 189 QNYDYRGGWGDPWGSPSTLDSDDRLVDLAEFDFEKTLGVLRGAPDTLGMNRADVTDTWLR 248 Query 247 VEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVSYPS 289 V P DP TP L+L + +SD+G G + DGT K + PS Sbjct 249 VGPSADPATPDLLTLEIIANSDFGTGRIELFPDGTTKAIWPPS 291 >gi|118472468|ref|YP_891102.1| hypothetical protein MSMEG_6902 [Mycobacterium smegmatis str. MC2 155] gi|118173755|gb|ABK74651.1| putative membrane protein [Mycobacterium smegmatis str. MC2 155] Length=289 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/284 (52%), Positives = 202/284 (72%), Gaps = 7/284 (2%) Query 9 LARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL 68 +A ++ TRAKDSDR D C++LD A+ +G+LSMEEHR+R+SAA KA TLG+L LVADL Sbjct 1 MATRQTSMTRAKDSDRNDTCKVLDSAMAEGQLSMEEHRDRLSAAMKATTLGELADLVADL 60 Query 69 QVESAPAQMPALKS-RAKRTE-----LGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTS 122 Q E+AP ++P LK R R G A+ V VLLG+GIGWG+YG++ +P S Sbjct 61 QNEAAPVRLPTLKPPRIPRPSSGSPGWGFKIASAVVLVLLGIGIGWGMYGSSPTPFHVAS 120 Query 123 DPGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPA 182 DPGA+ DGIAP VL PRQL SL G GL +Q RK+FG+TMGY L I+ + A LDR DP+ Sbjct 121 DPGAQADGIAPEVLAAPRQLQSLNGFNGLFDQMRKKFGNTMGYELDIHSDMAFLDRPDPS 180 Query 183 DDRRVLAYTYRGGWGDATSSAKSI-ADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVK 241 D+RR ++YTYRGGWGD + S ++ +D +VDLSKFD + + IMRGAP+T+G+K++DVK Sbjct 181 DNRREMSYTYRGGWGDPSGSPSAVDSDARLVDLSKFDYEKTLAIMRGAPDTVGIKRADVK 240 Query 242 SMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHV 285 +L + P +DP TP A+++ ++V+S++G G + DGT K + Sbjct 241 DTWLRIGPSEDPATPEAVNVEIFVNSEFGNGRIELYPDGTTKAI 284 >gi|145221463|ref|YP_001132141.1| hypothetical protein Mflv_0869 [Mycobacterium gilvum PYR-GCK] gi|315446785|ref|YP_004079664.1| hypothetical protein Mspyr1_53050 [Mycobacterium sp. Spyr1] gi|145213949|gb|ABP43353.1| protein of unknown function DUF1707 [Mycobacterium gilvum PYR-GCK] gi|315265088|gb|ADU01830.1| protein of unknown function (DUF1707) [Mycobacterium sp. Spyr1] Length=297 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 141/270 (53%), Positives = 184/270 (69%), Gaps = 5/270 (1%) Query 17 TRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQ 76 TRAKDSDR + C+ILD AL DG+LSM EH ERV +AT A TLG LQ LV+DLQ A+ Sbjct 19 TRAKDSDRNETCQILDTALADGQLSMTEHGERVKSATTASTLGQLQDLVSDLQTAKTIAE 78 Query 77 ----MPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIA 132 + + R G+ AA V+LG+ IGWG+YGN+ SPL F +DPGAK DGI Sbjct 79 PTVITRVINRQVARPGWGVKAAIAAVLVVLGIAIGWGLYGNSSSPLSFQTDPGAKDDGIP 138 Query 133 PVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTY 192 VLTPPRQL SLGG TGL EQ R++FG TMGY L I+ + A LDR DP D+RR L Y Y Sbjct 139 ARVLTPPRQLQSLGGFTGLFEQMRQKFGSTMGYELDIHSDMAYLDRPDPQDNRRSLTYYY 198 Query 193 RGGWGDATSSAKSI-ADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVK 251 RGGWG+ + S ++ AD +VDL+KFD + +G++RGAPET+G+ ++D+K +L + P + Sbjct 199 RGGWGEPSGSPTAVSADERLVDLAKFDFEKILGVVRGAPETVGISRADLKETWLRISPSE 258 Query 252 DPTTPAALSLSLYVSSDYGGGYLVFAGDGT 281 DP TP A+ + + V+SD+G G + DGT Sbjct 259 DPATPDAVIVEIVVNSDFGNGRIELYPDGT 288 >gi|120406968|ref|YP_956797.1| hypothetical protein Mvan_6038 [Mycobacterium vanbaalenii PYR-1] gi|119959786|gb|ABM16791.1| protein of unknown function DUF1707 [Mycobacterium vanbaalenii PYR-1] Length=294 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/271 (53%), Positives = 182/271 (68%), Gaps = 8/271 (2%) Query 19 AKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA----- 73 AKDSDR + C++LD AL +G+LSM EH ERV AAT A TLG LQ LV+DLQ + Sbjct 15 AKDSDRNETCQLLDAALAEGQLSMTEHGERVKAATTAATLGQLQDLVSDLQTARSLNVDV 74 Query 74 PAQMPALKSRAKRTELGLLAAAFVASVL--LGVGIGWGVYGNTRSPLDFTSDPGAKPDGI 131 P + R + G A +A VL LG+ IGWG+YGNT SPL+FTSDPGAK DGI Sbjct 75 PVITKVINRRIPGVQAGWGIKAAIAGVLVVLGIAIGWGLYGNTPSPLNFTSDPGAKADGI 134 Query 132 APVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYT 191 VLT P+QL SLGG GL EQ RK+FG TMGY L I+ + A LDR DP D+RR L+Y Sbjct 135 PATVLTAPKQLQSLGGFNGLFEQMRKKFGSTMGYELDIHSDMAFLDRPDPQDNRRSLSYH 194 Query 192 YRGGWGDATSSAKSI-ADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPV 250 YRGGWG+ T S ++ AD +VDL+KFD + +GI+RGAPET+G+ ++DV +L + P Sbjct 195 YRGGWGEPTGSPSTVDADARLVDLAKFDYEKTLGILRGAPETVGIARADVTDSWLRISPS 254 Query 251 KDPTTPAALSLSLYVSSDYGGGYLVFAGDGT 281 +DP TP A+ + + V+SD+G G + DG+ Sbjct 255 EDPATPDAVIIEIIVNSDFGTGRIELYPDGS 285 >gi|169631977|ref|YP_001705626.1| hypothetical protein MAB_4904 [Mycobacterium abscessus ATCC 19977] gi|169243944|emb|CAM64972.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=261 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/271 (39%), Positives = 154/271 (57%), Gaps = 14/271 (5%) Query 16 ATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPA 75 ATRAKDSDR+ C+ LD A DG++S EEHR+R++ AT+A TLG+L+ +VADLQ+ + A Sbjct 2 ATRAKDSDREATCKALDTAFGDGQISTEEHRQRIALATRAQTLGELKGVVADLQITAHAA 61 Query 76 QMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAPVV 135 + P +R A A++ G TR DPGA DGIAPVV Sbjct 62 ETPTAPPPRRRWPALAATAVVAAAIGAGA-----GIYATRP---SAPDPGAVSDGIAPVV 113 Query 136 LTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGG 195 + P +L S+ GLTGLL Q R +FGDT+G L I ASL R++ +D + Y Y+GG Sbjct 114 IAP-AKLFSVPGLTGLLAQMRAKFGDTVGIELTIRATNASLVRIEASDPDLPITYPYQGG 172 Query 196 WGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKDPTT 255 + D + + +V + DLS+FD VG++RGAPETL + + ++++P D Sbjct 173 FRDGGAMPGTWRNVKIGDLSRFDPTKIVGVLRGAPETLNVPTAGDGGTVMVIKPSDD--- 229 Query 256 PAALSLSLYVSSDYGGGYLVFAGDGTIKHVS 286 + +++ VS G ++ AG+G K V+ Sbjct 230 --GVDITITVSDKDRTGRMLVAGNGEPKEVT 258 >gi|169631978|ref|YP_001705627.1| hypothetical protein MAB_4905 [Mycobacterium abscessus ATCC 19977] gi|169243945|emb|CAM64973.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=288 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/290 (37%), Positives = 162/290 (56%), Gaps = 23/290 (7%) Query 15 TATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAP 74 + TRAKDSDR C+ LD AL DG+LSMEEHRERV+AAT A TLGDL LV DLQ+++ P Sbjct 7 SQTRAKDSDRDATCQALDIALGDGQLSMEEHRERVTAATSAKTLGDLSALVTDLQLDAPP 66 Query 75 AQMPALKSRA---KRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSD----PGAK 127 +P + +RT ++AA A + LGVG+ G P + GA Sbjct 67 VALPREHKPSAWRQRTPFLVIAAFSAAVIALGVGLLVRESGTAERPGSAGAPGAVGRGAG 126 Query 128 P--DGIAPVVLTPP----RQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDP 181 P DG+AP V+ P + + + GL+ L+++ ++FGD+ GY L +YPEYA ++R DP Sbjct 127 PIDDGVAPTVIPRPAPAKKNIFTAPGLSTLIDRIHQKFGDSTGYELDLYPEYAIIERADP 186 Query 182 ADDRRVLAYTYR-GGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDV 240 + + +++Y YR G + D +S ++ D+ FD +GI+RGA +TLG+ + + Sbjct 187 DEPKGLISYLYREGTFDDPDRRPRSFDNLG--DVGAFDQAAILGIIRGAAQTLGIDRGE- 243 Query 241 KSMYLIVEPVKDPTTPAALSLSLYVS-SDYGGGYLVFAGDGTIKHVSYPS 289 ++I+ P + L +++Y S +Y GY+ G + PS Sbjct 244 -PSHVIIRPNAE----GGLQINIYASRGNYESGYISVDAQGLNPKLYPPS 288 >gi|229494682|ref|ZP_04388440.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318349|gb|EEN84212.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=256 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/276 (32%), Positives = 133/276 (49%), Gaps = 35/276 (12%) Query 17 TRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQ 76 TRA+++DR+ C +LD A DG+L+ EH E A AVTLGDL+ L +DLQ E A Sbjct 9 TRARNADREATCAVLDSAFADGQLTATEHDELTELAAVAVTLGDLEDLTSDLQTE---AS 65 Query 77 MPALKSRAKRTELGL---LAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAP 133 +P L RTE L L A + ++ L +G+G+ F+S Sbjct 66 LPVL-----RTEPSLDTRLIALVIIALSLVSAVGFGIKYAASDVTIFSS----------- 109 Query 134 VVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYR 193 P QLH++ GL + +G + + IYP YA + R DPA R+ L YR Sbjct 110 ----PEPQLHTVDGLGAMFHAIETEYGSGLVDEMTIYPTYARVTRADPAAPRKSLDSYYR 165 Query 194 GGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKDP 253 G D TS DV+ +D+ + D + + ++ GA T ++ + YL++E + Sbjct 166 GDLEDTTSGGSREPDVTQIDVRQLDPRIVIALLDGAGTTTSVQNPTTR--YLMIESSE-- 221 Query 254 TTPAALSLSLYVSSDYG-GGYLVFAGDGTIKHVSYP 288 T P ++ ++V +D G+L DG I + YP Sbjct 222 TVP---TIEIHVGNDLDESGHLTAGLDGEIMSI-YP 253 >gi|226362650|ref|YP_002780428.1| hypothetical protein ROP_32360 [Rhodococcus opacus B4] gi|226241135|dbj|BAH51483.1| hypothetical protein [Rhodococcus opacus B4] Length=284 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/276 (32%), Positives = 139/276 (51%), Gaps = 17/276 (6%) Query 9 LARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL 68 +A G S TRA+D DR +AC LD A DG+L E+ +R + A A TL +L L++DL Sbjct 1 MASGPSPQTRARDLDRVNACSQLDAAYADGQLGAGEYHDRSAQAMSAKTLAELNLLISDL 60 Query 69 QV-----ESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGN-TRSPLDFTS 122 Q+ E AP + P RA R + A V ++ L V G T +P+ Sbjct 61 QLPSAVTEQAPVRAPGTPRRALRIAVACGAVIAVGAIGLAVTEQDGPDPVVTPAPVQVEK 120 Query 123 DPGAKPD----GIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDR 178 P A+P+ + P+++ P + L + G+ L EQ R++FGD + L +Y EYA L R Sbjct 121 -PLAQPEVAVPAVEPIIVGPAQPL-TQDGIYALFEQYRQKFGDLTVHELGLYDEYAILSR 178 Query 179 VDPADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQS 238 P +V Y +RGG+ + + + + VDL++ D V ++ AP +G+ Sbjct 179 TAPDAPDKVDRYDFRGGFKASGTRTQRLPGTGEVDLAQVDVPALVALIADAPRLIGVPDG 238 Query 239 DVKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYL 274 + + L+ + K PT +++ +Y + GGGYL Sbjct 239 SIGHI-LLADGGKGPT----INVYVYDKAQTGGGYL 269 >gi|226309330|ref|YP_002769290.1| hypothetical protein RER_58430 [Rhodococcus erythropolis PR4] gi|226188447|dbj|BAH36551.1| hypothetical protein RER_58430 [Rhodococcus erythropolis PR4] Length=256 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/273 (31%), Positives = 131/273 (48%), Gaps = 29/273 (10%) Query 17 TRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQ 76 TRA+++DR+ C +LD A DG+L+ EH E A A TLGDL+ L +DLQ E A Sbjct 9 TRARNADREATCAVLDSAFADGQLTATEHDELTELAAMAATLGDLEDLTSDLQTE---AS 65 Query 77 MPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAPVVL 136 +P L+ + + L+A A +A L+ IG+G+ F+S Sbjct 66 LPVLR-KEPSLDTRLIALAIIALSLVS-AIGFGIKYVASDVTIFSS-------------- 109 Query 137 TPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGW 196 P QLH++ GL + +G + + IYP YA + R DPA R+ L YRG Sbjct 110 -PEPQLHTVDGLGAMFRAIETEYGSGLVDEMTIYPTYARVTRADPAAQRKSLDSYYRGDL 168 Query 197 GDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKDPTTP 256 D TS V+ +D+++ D + + ++ GA T ++ + Y+ V + T P Sbjct 169 EDTTSGGSREPGVTQIDVTQLDPRIVIALLDGAGTTTSVQNPTTR--YVSVGSTE--TVP 224 Query 257 AALSLSLYVSSDYG-GGYLVFAGDGTIKHVSYP 288 ++ ++V +D GYL DG I + YP Sbjct 225 ---TIEIHVGNDLDESGYLTAGLDGEIMSI-YP 253 >gi|226362652|ref|YP_002780430.1| hypothetical protein ROP_32380 [Rhodococcus opacus B4] gi|226241137|dbj|BAH51485.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=263 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/273 (33%), Positives = 133/273 (49%), Gaps = 21/273 (7%) Query 9 LARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL 68 ++R RA+DSDR D C +LD AL DG+LS EH R S A +A T G+L+RL+ DL Sbjct 1 MSRTPLAGIRARDSDRADTCGLLDAALADGQLSASEHASRTSTAMRAKTFGELERLIGDL 60 Query 69 QVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKP 128 Q+ S A P + R +R+ + AA + VG G N+ Sbjct 61 QIPSRLAASPVVSPRRRRSPRRWVYAAILVVAAAAVGGIAGAVANSD------------- 107 Query 129 DGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVL 188 + P P L + GL L + R +GDT+ L +YPE+A +DR + R+ Sbjct 108 --LGPSKSVP--NLTTGAGLHFFLAEYRAEYGDTVADELGLYPEHAVVDRPASGNSRQSD 163 Query 189 AYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVE 248 +Y Y G + D SS+ AD DL D G++ GAPETL + V+ + E Sbjct 164 SYLYDGEFDDWGSSSSRPADERSFDLGTVDQVAIAGLLAGAPETLRVPDGTVEIVSFRYE 223 Query 249 PVKDPTTPAALSLSLYV-SSDYGGGYLVFAGDG 280 P D +P ++S++V ++D G++V DG Sbjct 224 PGSDDGSP---TISIHVKNADGNSGHMVVGFDG 253 >gi|111020432|ref|YP_703404.1| hypothetical protein RHA1_ro03443 [Rhodococcus jostii RHA1] gi|110819962|gb|ABG95246.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=284 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 81/275 (30%), Positives = 132/275 (48%), Gaps = 15/275 (5%) Query 9 LARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL 68 +A G S+ TRA+D DR +AC LD A DG+L +E+ +R + A A TL +L L++DL Sbjct 1 MASGPSSQTRARDLDRVNACSQLDAAYADGQLGADEYHDRTAQAMSAKTLAELNLLISDL 60 Query 69 QVES-----APAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSD 123 Q+ S AP + RA R + A V +V L + G Sbjct 61 QLPSSITAQAPVRTAGSPRRALRIAVACGAVIAVGAVGLALTEQDGPDPVAPPVPVQVDK 120 Query 124 PGAKPD----GIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRV 179 P +P+ + P+++ + L + G+ L EQ R++FGD + L +Y EYA L R Sbjct 121 PLTQPEVEVPAVEPIIVGQAQPL-TQDGIYALFEQYRQKFGDLTVHELGLYDEYAILSRT 179 Query 180 DPADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSD 239 P +V Y +RGG+ + + + VDL++ + V ++ AP +G Sbjct 180 APDAPDKVDRYDFRGGFKTSGIRTQRLPGTGEVDLAQVNVPALVALIADAPRLVGAPDGT 239 Query 240 VKSMYLIVEPVKDPTTPAALSLSLYVSSDYGGGYL 274 + + L+ + K PT +++ +Y + GGGYL Sbjct 240 IGHV-LLADGGKGPT----INVYVYDKAQTGGGYL 269 >gi|111020434|ref|YP_703406.1| hypothetical protein RHA1_ro03445 [Rhodococcus jostii RHA1] gi|110819964|gb|ABG95248.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=263 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 89/273 (33%), Positives = 127/273 (47%), Gaps = 21/273 (7%) Query 9 LARGVSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL 68 + R RA+DSDR DAC +LD AL DG+LS EEH R S A +A T +L RLV DL Sbjct 1 MPRTTLAGIRARDSDRADACGMLDAALADGQLSAEEHASRTSTAMRAKTFDELDRLVGDL 60 Query 69 QVESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKP 128 Q+ S A P + R +R+ + AA + VG G N+ Sbjct 61 QIPSRLAASPVVSPRRRRSSRRWVYAAVLVVAAAAVGGIAGAVANSD------------- 107 Query 129 DGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVL 188 + P P L + GL L++ R +GDT+ L +YP +A DR + R+ Sbjct 108 --LGPSESVP--NLTTGAGLHFFLDEYRAEYGDTVADELGLYPAHAVFDRPTVGNARQSD 163 Query 189 AYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVE 248 +Y Y G + D SS+ D DL D ++ GAPETL + V+ + E Sbjct 164 SYLYDGEFDDWGSSSTRSDDEKSFDLGTVDQVAIARLLAGAPETLHVPDGAVEIVSFRYE 223 Query 249 PVKDPTTPAALSLSLYVSSDYGG-GYLVFAGDG 280 P D P ++S++V + G G++V DG Sbjct 224 PGSDDGPP---TISIHVKNAAGHTGHMVVGFDG 253 >gi|54027528|ref|YP_121770.1| hypothetical protein nfa55540 [Nocardia farcinica IFM 10152] gi|54019036|dbj|BAD60406.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=267 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/271 (30%), Positives = 126/271 (47%), Gaps = 23/271 (8%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 S A RA DSDR D C +LD AL DG+L+ EH R SAA +AVT DL+ L+ADLQ+ A Sbjct 6 SGALRAADSDRADVCGMLDAALADGQLTAAEHATRTSAAMRAVTFADLETLIADLQLPEA 65 Query 74 PAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAP 133 P +++ +R + A VA + G + ++ G P Sbjct 66 LVDTPVVRADLRRPHRLRMPLAIVAGAAALGAVVGLAVGCAGGGAETAAEAG------RP 119 Query 134 VVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRV---DPADDRRVLAY 190 TP GL + R FGDT + ++PE+ S+ R +PA + R + Sbjct 120 AFTTP-------NGLARFIADYRAHFGDTSVDEVTLHPEHVSIVRRAADNPAQEDR---W 169 Query 191 TYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPV 250 Y G + + ++++ D +DL+ D ++ G+ T+G+ + V +L + P Sbjct 170 DYDGEFDHSVTTSRD-PDDPTIDLAALDLPAIAAVLAGSTRTVGVPEGAVT--HLGIGPS 226 Query 251 KDPTTPAALSLSLYVSSDYGG-GYLVFAGDG 280 + L + ++V+ + GG G L A DG Sbjct 227 EHAGIAGGLEVQIFVADERGGRGDLTVAADG 257 >gi|312141943|ref|YP_004009279.1| hypothetical protein REQ_46600 [Rhodococcus equi 103S] gi|311891282|emb|CBH50603.1| hypothetical protein REQ_46600 [Rhodococcus equi 103S] Length=268 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 89/278 (33%), Positives = 124/278 (45%), Gaps = 34/278 (12%) Query 15 TATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAP 74 T RA+D DR LD A DG+LS EHR R AA A TL DL RLV DLQ AP Sbjct 13 TRIRARDVDRTAVRAALDAAFTDGQLSHVEHRRRTEAAQSARTLDDLDRLVGDLQ---AP 69 Query 75 AQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKP--DGIA 132 + + + A A A+V+L GI + TSD P G + Sbjct 70 PTLSGTTAPTSMSTSTRWAVALSAAVVLICGI-----------VAVTSDRDVVPASSGAS 118 Query 133 PVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTY 192 V LT + G +L+ + G RL++YPEYAS+ R +Y Y Sbjct 119 SVELT------TAAGFGRMLDDIEHQLGSGEVDRLIVYPEYASISRAVVGAPGSEQSYRY 172 Query 193 RGGW-GDATSSAKSIADVSVVDLSKFDAKTA--VGIMRGAPETLGLKQSDVKSMYLIVEP 249 G D S A V VDL++ A +G++ GA TLG+ SD +YLI + Sbjct 173 EDGHLTDNGRSPGRTAGVP-VDLAELRPNVARLMGLLYGADRTLGV--SDPTQVYLIAQR 229 Query 250 VKDPTTPAALSLSLYVSSDYGG--GYLVFAGDGTIKHV 285 D + +S++V+ + G G++ DG ++ V Sbjct 230 DDDDGS----IVSVHVTDENTGAQGFMTVGFDGEVRSV 263 >gi|226362651|ref|YP_002780429.1| hypothetical protein ROP_32370 [Rhodococcus opacus B4] gi|226241136|dbj|BAH51484.1| hypothetical protein [Rhodococcus opacus B4] Length=274 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/257 (29%), Positives = 120/257 (47%), Gaps = 17/257 (6%) Query 17 TRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQ 76 TRA+D DR + +LD A DG+++ EHR A +A TL DL LV+DLQ PA Sbjct 9 TRARDVDRANTSALLDAAFGDGQINEAEHRAMSELAAEARTLTDLDVLVSDLQ---RPAD 65 Query 77 MPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKP---DGIAP 133 P + T A A ++ +G+ + T P A+ D + P Sbjct 66 APPDARPPRDTAKPWFPLAVAAVAVVAAVGAFGLADGEDAEASVT--PVAQQVDFDSVEP 123 Query 134 VVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYP-EYASLDRVDPADDRRVLAYTY 192 VV+ P + S G+ L++ R +FGD + L ++ +ASL+R P + R+++Y Y Sbjct 124 VVVATPNPV-SPEGMKVFLDRYRAKFGDLIVDDLTLHEGGHASLERALPLEPNRMVSYDY 182 Query 193 RGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKD 252 RGG+ + + D V DLS + G + GAP +L + V + Sbjct 183 RGGFTPSGTPTTRKVDTPVFDLSTLNLDRIGGTVAGAPVSLNVPDGKVSHISFQ------ 236 Query 253 PTTPAALSLSLYVSSDY 269 T ++S+YV++++ Sbjct 237 -TDNGGPTVSIYVNNEF 252 >gi|229494680|ref|ZP_04388438.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318347|gb|EEN84210.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=275 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/270 (28%), Positives = 126/270 (47%), Gaps = 19/270 (7%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 S+ TRA+D DR D C +LD AL DG++++EEH R ++A A TLG L LV DLQ Sbjct 11 SSRTRARDVDRSDTCAVLDAALSDGQITVEEHATRTASAMTATTLGQLDLLVHDLQ---- 66 Query 74 PAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYG--NTRSPLDFTSDPGAKPDGI 131 A + ++ +R + AA ASV+ +G+ ++R P + GA+P + Sbjct 67 KASLRNAVAKVRRIDKIWYVAA--ASVVFAGLVGFLTLSADDSRPPSPPAAAQGAEP--L 122 Query 132 APVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYT 191 AP+V + + + G+ + + ++G T+ Y +AS+ R Sbjct 123 APIVSSTLNTV-TASGIREFITRYNNKYGTTVIDSASFYDGHASVSRAAAISPNVEEDID 181 Query 192 YRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVK 251 +RGG+ S++ A DL+ D G + GA L + +++ + + + Sbjct 182 FRGGFTPRDSTSTRAASTVTFDLAAVDIDKLAGYLAGASANLNVPDAEITHISM-SSSGQ 240 Query 252 DPTTPAALSLSLYVSSDYGG-GYLVFAGDG 280 +P +S+Y S+D G G + DG Sbjct 241 EP------RISIYASNDLGASGSMDLTPDG 264 >gi|111020433|ref|YP_703405.1| hypothetical protein RHA1_ro03444 [Rhodococcus jostii RHA1] gi|110819963|gb|ABG95247.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=274 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 77/272 (29%), Positives = 126/272 (47%), Gaps = 24/272 (8%) Query 17 TRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVES-APA 75 TRA+D DR + +LD A DG+++ EHR A +A TL DL+ LV+DLQ + AP Sbjct 9 TRARDVDRANTSALLDAAFGDGQINEAEHRAMSELAAEARTLADLEVLVSDLQRPADAPP 68 Query 76 QMPALKSRAKR-----TELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDG 130 + AK + + AA A L+ +DF D Sbjct 69 DARPPRDTAKHWFPAAVAVAAVVAAVGACTLVDSDDAQATVTPVAQQVDF--------DS 120 Query 131 IAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYP-EYASLDRVDPADDRRVLA 189 + P+V+ P + + G+ L++ RFGD + L +Y +A L+R P + R+++ Sbjct 121 VQPLVVPTPNPV-TPEGMKVFLDRYLARFGDLIVDDLTLYEGGHAGLERALPLEPNRMVS 179 Query 190 YTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEP 249 Y YRGG+ + + D V DLS + G + GAP +L + +V ++ E Sbjct 180 YDYRGGFTPSGTPTTRKVDTPVFDLSTLNLDKIGGTVVGAPVSLNVPDGEVS--HISFEA 237 Query 250 VKDPTTPAALSLSLYVSSDYG-GGYLVFAGDG 280 D T +S+YV++++ G++ A G Sbjct 238 DGDGPT-----VSIYVTNEFSESGHMELAPSG 264 >gi|312141940|ref|YP_004009276.1| membrane protein [Rhodococcus equi 103S] gi|311891279|emb|CBH50600.1| putative membrane protein [Rhodococcus equi 103S] Length=294 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 92/300 (31%), Positives = 137/300 (46%), Gaps = 41/300 (13%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 S TRA+D DR C +LD +G+L+ E+ R +AA KA TLG+L LV+DLQ+ Sbjct 8 SARTRARDIDRAQTCGLLDAGYSEGQLTTSEYDTRTAAAMKAKTLGELDALVSDLQI--- 64 Query 74 PAQMPALKSR----AKRTELG-LLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDP---- 124 PA + R ++R G ++AAA VA ++ + G+ SP +DP Sbjct 65 PAHLSEAVVREAPGSRRKRRGPVIAAAVVAVAVVIGLVAVVTRGDDASP---QTDPVREV 121 Query 125 -------------GAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYP 171 +PD I + P + G+ L+Q + FGD + L + Sbjct 122 VAAPAAAPAPAPIPGEPDAI----VIEPIDTTTAEGIEEFLQQFQITFGDQIVDELYLKQ 177 Query 172 EYASLDRVDPADDRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPE 231 YA+ R+ P RV + Y G+ + S + +D S VDL+ + ++R AP Sbjct 178 RYATFTRMLPEQPHRVQRWDYYRGFNPSGSPSSRPSDAS-VDLAGLRIEGLRNLIRDAPS 236 Query 232 TLGLKQSDVKSMYLIVEPVKDPTTPAALSLSLYVSSDYG--GGYLVFAGDGTIKHVSYPS 289 TLGL V S+ + P+ D P L +YV D G G+L DG + VS PS Sbjct 237 TLGLPGGRVDSIIVRPNPITD--EPEIL---VYV-EDPGLFSGHLYATFDGVVTDVSAPS 290 >gi|325677398|ref|ZP_08157063.1| hypothetical protein HMPREF0724_14846 [Rhodococcus equi ATCC 33707] gi|325551861|gb|EGD21558.1| hypothetical protein HMPREF0724_14846 [Rhodococcus equi ATCC 33707] Length=281 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/281 (26%), Positives = 119/281 (43%), Gaps = 16/281 (5%) Query 13 VSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQ--- 69 VS RA+D DR C +LD +G+L E++ R + A +A TLG+L LVADLQ Sbjct 5 VSARKRARDIDRAQTCALLDAGYGEGQLDPTEYQNRTTQAMQAKTLGELASLVADLQIPA 64 Query 70 --VESAPAQMPALKS--RAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPG 125 VE+A P ++ + ++A + + L G T + P Sbjct 65 HLVEAARESTPTPRTPIEGRAVAAVVVAVLAIGATALYTNRGGDTAPETVAAAGAAPIPA 124 Query 126 AKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDR 185 +P+ I P S G+ L + +++FGD + ++ YP YA R P Sbjct 125 GEPEPIVVEAYDP----VSAEGIRDFLTRYQQKFGDLLVDDVIFYPTYAFFTRALPDQPH 180 Query 186 RVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYL 245 R +++RGG+ + VDL+ D ++ + +GL + V+ +++ Sbjct 181 RAQDWSFRGGFSTSRGPDGRELGTVTVDLATLDVDRLAEVLASGADRVGLPTAHVEHVFV 240 Query 246 IVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVS 286 +P D L L+ + G + DGT+ VS Sbjct 241 RPDPPDD-----VLVSVLFQDHEERTGMIDTRMDGTVVDVS 276 >gi|312141942|ref|YP_004009278.1| hypothetical protein REQ_46590 [Rhodococcus equi 103S] gi|311891281|emb|CBH50602.1| hypothetical protein REQ_46590 [Rhodococcus equi 103S] Length=281 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/283 (26%), Positives = 119/283 (43%), Gaps = 20/283 (7%) Query 13 VSTATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQV-- 70 VS RA+D DR C +LD +G+L E++ R + A +A TLG+L LVADLQ+ Sbjct 5 VSARKRARDIDRAQTCALLDAGYGEGQLDPTEYQNRTTQAMQAKTLGELASLVADLQIPA 64 Query 71 -------ESAPAQMPALKSRAKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSD 123 ES P A++ RA ++A + + L G T + Sbjct 65 HLVEAARESTPTPRTAIEGRAVAAV--VVAVLAIGATALYTNRGGDTAPETVAAAGAAPI 122 Query 124 PGAKPDGIAPVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPAD 183 P +P+ I P S G+ L + +++FGD + ++ YP YA R P Sbjct 123 PAGEPEPIVVEAYDP----VSAEGIRDFLTRYQQKFGDLLVDDVIFYPTYAFFTRALPDQ 178 Query 184 DRRVLAYTYRGGWGDATSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSM 243 R +++RGG+ + VDL+ D ++ + +GL + V+ + Sbjct 179 PHRAQDWSFRGGFSTSGGPDGRELGTVTVDLATLDVDRLAEVLASGADRVGLPTAHVEHV 238 Query 244 YLIVEPVKDPTTPAALSLSLYVSSDYGGGYLVFAGDGTIKHVS 286 ++ +P D L L+ + G + DGT+ S Sbjct 239 FVRPDPPDD-----VLVSVLFQDHEERTGMIDTRMDGTVVDFS 276 >gi|325677397|ref|ZP_08157062.1| hypothetical protein HMPREF0724_14845 [Rhodococcus equi ATCC 33707] gi|325551860|gb|EGD21557.1| hypothetical protein HMPREF0724_14845 [Rhodococcus equi ATCC 33707] Length=269 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 88/279 (32%), Positives = 123/279 (45%), Gaps = 35/279 (12%) Query 15 TATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAP 74 T RA+D DR LD A DG+LS EHR R AA A TL DL RLV DLQ AP Sbjct 13 TRIRARDVDRTAVRAALDAAFTDGQLSHVEHRRRTEAAQSARTLDDLDRLVGDLQ---AP 69 Query 75 AQMPALKSRAKRTELGLLAAA-FVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKP--DGI 131 PAL T + + ++ V + G+ TSD P G Sbjct 70 ---PALSGATASTSASTSTSTRWAVALSAAVVVICGIVA-------VTSDRDVVPASSGA 119 Query 132 APVVLTPPRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYT 191 + V LT + G +L+ + G RL++YPEYAS+ R +Y Sbjct 120 SSVELT------TAAGFGRMLDDIEHQLGSGEVDRLIVYPEYASISRAVVGAPGSEQSYR 173 Query 192 YRGGW-GDATSSAKSIADVSVVDLSKFDAKTA--VGIMRGAPETLGLKQSDVKSMYLIVE 248 Y G D S A V VDL++ A +G++ GA TLG+ SD +YLI + Sbjct 174 YEDGHLTDNGRSPGRTAGVP-VDLAELRPNVAQLMGLLYGADRTLGV--SDPTQVYLIAQ 230 Query 249 PVKDPTTPAALSLSLYVSSDYGG--GYLVFAGDGTIKHV 285 D + +S++V+ + G G++ DG ++ V Sbjct 231 RDDDGSI-----VSVHVTDENTGAQGFMTVGFDGEVRSV 264 >gi|226309329|ref|YP_002769289.1| hypothetical protein RER_58420 [Rhodococcus erythropolis PR4] gi|226188446|dbj|BAH36550.1| hypothetical protein RER_58420 [Rhodococcus erythropolis PR4] Length=273 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/262 (26%), Positives = 116/262 (45%), Gaps = 17/262 (6%) Query 21 DSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQMPAL 80 D DR D C +LD AL DG+++ +EH R +AA A TLG L LV DLQ A + Sbjct 16 DVDRSDTCAVLDSALSDGQITADEHANRTAAAMTATTLGQLDLLVRDLQ----KATLRNA 71 Query 81 KSRAKRTE-LGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAPVVLTPP 139 ++ +R + + LAAA +++ G+ IG+ SP +AP+V + Sbjct 72 VAKVRRIDKIWYLAAA--STIFAGL-IGFLTLSADDSPPPPPPAAAEPVGPLAPIVSSTL 128 Query 140 RQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGWGDA 199 + + G+ + + ++G T+ Y +AS+ R +RGG+ Sbjct 129 NTV-TASGIGEFIARYSAKYGTTLIDSANFYDGHASVTRAAAVSPNLEEDIDFRGGFTPR 187 Query 200 TSSAKSIADVSVVDLSKFDAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKDPTTPAAL 259 S++ A DL+ D G + GA L + +++ + + +DP Sbjct 188 ESTSTRAASTVTFDLAAVDIDKLAGYLAGASANLNVPDAEITHISM-SSSSQDP------ 240 Query 260 SLSLYVSSDYGG-GYLVFAGDG 280 +S+YV + G G++ DG Sbjct 241 RISIYVDNKLGASGWMNLTPDG 262 >gi|54027529|ref|YP_121771.1| hypothetical protein nfa55550 [Nocardia farcinica IFM 10152] gi|54019037|dbj|BAD60407.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=291 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/173 (37%), Positives = 86/173 (50%), Gaps = 3/173 (1%) Query 31 LDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQMPALKSRAKRTELG 90 LD A +G+L+ +EH R A +A TLGDL LV DL++ + P R +LG Sbjct 28 LDHARVEGQLTEDEHHARRDLADEARTLGDLAVLVDDLRLAPSAEPRPPRSRRRHWFQLG 87 Query 91 LLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGAKPDGIAPVVLTPPRQLHSLGGLTG 150 + AAA VA+V V +P+ P A DG+APVV+ P L + GL Sbjct 88 VAAAAVVAAVATATLTARAVRPEPPAPVAAPVAPVADLDGVAPVVIGTPNLL-TETGLRQ 146 Query 151 LLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGWGDATSSA 203 L+ R RFGD L ++PE ASL + P R + Y+YR WG A A Sbjct 147 LVADLRTRFGDPTVDELSVHPELASLTKAVPGQPNRKVGYSYR--WGFAPDGA 197 >gi|325675410|ref|ZP_08155094.1| hypothetical protein HMPREF0724_12876 [Rhodococcus equi ATCC 33707] gi|325553381|gb|EGD23059.1| hypothetical protein HMPREF0724_12876 [Rhodococcus equi ATCC 33707] Length=281 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/57 (53%), Positives = 37/57 (65%), Gaps = 0/57 (0%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQV 70 S TRA+D DR C +LD A DG+L +EEH R +AA +A TLG L+ L DLQV Sbjct 6 SDKTRARDIDRAQTCSLLDAAYADGQLGVEEHESRTAAAMRATTLGALRALTKDLQV 62 >gi|312140953|ref|YP_004008289.1| membrane protein [Rhodococcus equi 103S] gi|311890292|emb|CBH49610.1| putative membrane protein [Rhodococcus equi 103S] Length=283 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/57 (53%), Positives = 37/57 (65%), Gaps = 0/57 (0%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQV 70 S TRA+D DR C +LD A DG+L +EEH R +AA +A TLG L+ L DLQV Sbjct 6 SDKTRARDIDRAQTCSLLDAAYADGQLGVEEHESRTAAAMRATTLGALRALTKDLQV 62 >gi|226309328|ref|YP_002769288.1| hypothetical protein RER_58410 [Rhodococcus erythropolis PR4] gi|226188445|dbj|BAH36549.1| hypothetical protein RER_58410 [Rhodococcus erythropolis PR4] Length=286 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/57 (51%), Positives = 37/57 (65%), Gaps = 0/57 (0%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQV 70 S TRA+D DR + C +LD A +G+LS E++ ER A A TL +L RLV DLQV Sbjct 6 SPMTRARDLDRVETCNVLDAAYAEGQLSAEDYFERTEKARSAKTLLELARLVNDLQV 62 >gi|72160542|ref|YP_288199.1| hypothetical protein Tfu_0138 [Thermobifida fusca YX] gi|71914274|gb|AAZ54176.1| conserved hypothetical protein [Thermobifida fusca YX] Length=206 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/79 (45%), Positives = 45/79 (57%), Gaps = 2/79 (2%) Query 18 RAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESAPAQM 77 RA D+DR ++L +A DG L+ EEH ER+ A + A TLGDLQ L+ADL AP Sbjct 17 RASDADRDRVAQLLGEAFVDGRLTAEEHAERLDALSTATTLGDLQPLIADLG--PAPTLS 74 Query 78 PALKSRAKRTELGLLAAAF 96 A + RA T + A F Sbjct 75 EAEELRASSTGAENIVAVF 93 >gi|326331619|ref|ZP_08197907.1| hypothetical protein NBCG_03058 [Nocardioidaceae bacterium Broad-1] gi|325950418|gb|EGD42470.1| hypothetical protein NBCG_03058 [Nocardioidaceae bacterium Broad-1] Length=205 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/130 (37%), Positives = 62/130 (48%), Gaps = 22/130 (16%) Query 18 RAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVES----- 72 RA D+DR+ +L DA DG L+ EEH ERV +A TLG+L LV DL V S Sbjct 21 RASDADREVVRTVLTDAFADGRLTREEHDERVGTLLEARTLGELPALVDDLVVVSPVPAE 80 Query 73 APAQMP-ALKSR-----AKRTELGLLAAAFVASVLLGVGIGWGVYGNTRSPLDFTSDPGA 126 A A +P AL R A R E A F+ L I WG++ FT+ P Sbjct 81 AAASLPEALSFREQGAAAYRKEFQEAIATFLMVSL----ITWGIWL-------FTTAPDG 129 Query 127 KPDGIAPVVL 136 P + P++ Sbjct 130 HPWPLYPMLF 139 >gi|325677399|ref|ZP_08157064.1| hypothetical protein HMPREF0724_14847 [Rhodococcus equi ATCC 33707] gi|325551862|gb|EGD21559.1| hypothetical protein HMPREF0724_14847 [Rhodococcus equi ATCC 33707] Length=209 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/155 (30%), Positives = 78/155 (51%), Gaps = 15/155 (9%) Query 139 PRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGWGD 198 P +L + GL LL++ +++FGD+ L IYPEYA +R P ++Y Y G+ Sbjct 57 PAKLTTAAGLVRLLDEIQRKFGDSTVDALDIYPEYALFNRPVPGKPGMSVSYQYEMDDGE 116 Query 199 ATSSAKSIADVS----VVDLSKF--DAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPVKD 252 A + S + S +DL+ + T +G++ GA TL + +D S ++ +E +D Sbjct 117 ARFTEGSPSPRSGNGVPIDLAPLRPNVPTVIGLLYGADRTLAV--ADPTSTHISIE--QD 172 Query 253 PTTPAALSLSLYVSSDYGG--GYLVFAGDGTIKHV 285 P A +Y+ +D G G+L DG ++ V Sbjct 173 EHGPTA---EIYLGNDEQGTSGFLTVGFDGQVRAV 204 >gi|325677400|ref|ZP_08157065.1| hypothetical protein HMPREF0724_14848 [Rhodococcus equi ATCC 33707] gi|325551863|gb|EGD21560.1| hypothetical protein HMPREF0724_14848 [Rhodococcus equi ATCC 33707] Length=296 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/64 (46%), Positives = 40/64 (63%), Gaps = 3/64 (4%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQVESA 73 S TRA+D DR C +LD +G+L+ E+ R +AA KA TLG+L LV+DLQ+ Sbjct 8 SARTRARDIDRAQTCGLLDAGYSEGQLTTSEYDTRTAAAMKAKTLGELDALVSDLQI--- 64 Query 74 PAQM 77 PA + Sbjct 65 PAHL 68 >gi|229494666|ref|ZP_04388424.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318333|gb|EEN84196.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=286 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/57 (50%), Positives = 36/57 (64%), Gaps = 0/57 (0%) Query 14 STATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADLQV 70 S TRA+D DR + C +LD A +G+LS E++ +R A A TL L RLV DLQV Sbjct 6 SPMTRARDLDRVETCNVLDAAYAEGQLSAEDYFDRTEKAKSAKTLLALARLVNDLQV 62 >gi|297192341|ref|ZP_06909739.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151306|gb|EFH31078.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length=230 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/66 (46%), Positives = 40/66 (61%), Gaps = 5/66 (7%) Query 16 ATRAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL-----QV 70 A RA D+DR IL DAL +G L EEH ER+ A +A T+G+L+ +VADL + Sbjct 28 AIRASDADRDRIADILRDALAEGRLDAEEHSERIDAVYRAKTVGELEPIVADLPAAGPRA 87 Query 71 ESAPAQ 76 E AP + Sbjct 88 EGAPVR 93 >gi|256391079|ref|YP_003112643.1| hypothetical protein Caci_1882 [Catenulispora acidiphila DSM 44928] gi|256357305|gb|ACU70802.1| protein of unknown function DUF1707 [Catenulispora acidiphila DSM 44928] Length=187 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 34/51 (67%), Gaps = 0/51 (0%) Query 18 RAKDSDRQDACRILDDALRDGELSMEEHRERVSAATKAVTLGDLQRLVADL 68 R DS+RQ+ +L AL DG L M+E+ ER+ A +AVT+GDL+ L DL Sbjct 2 RVSDSERQEVVEVLKQALDDGRLKMDEYVERMEKAYEAVTIGDLELLHDDL 52 >gi|312141941|ref|YP_004009277.1| hypothetical protein REQ_46580 [Rhodococcus equi 103S] gi|311891280|emb|CBH50601.1| putative secreted protein [Rhodococcus equi 103S] Length=211 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/157 (30%), Positives = 79/157 (51%), Gaps = 18/157 (11%) Query 139 PRQLHSLGGLTGLLEQTRKRFGDTMGYRLVIYPEYASLDRVDPADDRRVLAYTYRGGWGD 198 P +L + GL LL++ +++FGD+ L IYPEYA +R P ++Y Y G+ Sbjct 58 PAKLTTAAGLVRLLDEIQRKFGDSTVDALDIYPEYALFNRPVPGKPGMSVSYQYEMDDGE 117 Query 199 A------TSSAKSIADVSVVDLSKF--DAKTAVGIMRGAPETLGLKQSDVKSMYLIVEPV 250 A + S +S V +DL+ + T +G++ GA TL + +D S ++ +E Sbjct 118 ARFTEAGSPSPRSGNGVP-IDLAPLRPNVPTVIGLLYGADRTLTV--ADPTSTHISIE-- 172 Query 251 KDPTTPAALSLSLYVSSDYGG--GYLVFAGDGTIKHV 285 +D P A +Y+ +D G G+L DG ++ V Sbjct 173 QDEHGPTA---EIYLGNDEQGTSGFLTVGFDGQVRAV 206 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 470845709104 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40