BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0052
Length=187
Score E
Sequences producing significant alignments: (Bits) Value
gi|253796967|ref|YP_003029968.1| hypothetical protein TBMG_00051... 379 1e-103
gi|345461991|ref|NP_214566.2| hypothetical protein Rv0052 [Mycob... 379 1e-103
gi|15839429|ref|NP_334466.1| hypothetical protein MT0058 [Mycoba... 379 1e-103
gi|31791229|ref|NP_853722.1| hypothetical protein Mb0053 [Mycoba... 377 4e-103
gi|339293128|gb|AEJ45239.1| hypothetical protein CCDC5079_0049 [... 335 1e-90
gi|289764166|ref|ZP_06523544.1| conserved hypothetical protein [... 323 6e-87
gi|254818594|ref|ZP_05223595.1| DJ-1/PfpI family protein [Mycoba... 253 8e-66
gi|342860218|ref|ZP_08716870.1| DJ-1/PfpI family protein [Mycoba... 249 1e-64
gi|183980106|ref|YP_001848397.1| transcriptional regulatory prot... 249 1e-64
gi|118615982|ref|YP_904314.1| transcriptional regulatory protein... 249 2e-64
gi|336459418|gb|EGO38360.1| transcriptional regulator containing... 244 4e-63
gi|41406164|ref|NP_959000.1| hypothetical protein MAP0066 [Mycob... 244 4e-63
gi|240168782|ref|ZP_04747441.1| transcriptional regulatory prote... 243 9e-63
gi|118465152|ref|YP_879373.1| DJ-1/PfpI family protein [Mycobact... 243 9e-63
gi|296167067|ref|ZP_06849479.1| DJ-1/PfpI family protein [Mycoba... 238 2e-61
gi|331694272|ref|YP_004330511.1| ThiJ/PfpI domain-containing pro... 221 4e-56
gi|333991294|ref|YP_004523908.1| transcriptional regulator [Myco... 211 4e-53
gi|168032228|ref|XP_001768621.1| predicted protein [Physcomitrel... 190 7e-47
gi|254548984|ref|ZP_05139431.1| hypothetical protein Mtube_00721... 184 5e-45
gi|302785824|ref|XP_002974683.1| hypothetical protein SELMODRAFT... 173 8e-42
gi|302759951|ref|XP_002963398.1| hypothetical protein SELMODRAFT... 173 1e-41
gi|302784298|ref|XP_002973921.1| hypothetical protein SELMODRAFT... 172 3e-41
gi|39933002|gb|AAR32679.1| 4-methyl-5(B-hydroxyethyl)-thiazole m... 172 3e-41
gi|302548312|ref|ZP_07300654.1| putative 4-methyl-5(B-hydroxyeth... 166 1e-39
gi|302771445|ref|XP_002969141.1| hypothetical protein SELMODRAFT... 166 1e-39
gi|254391851|ref|ZP_05007045.1| conserved hypothetical protein [... 158 3e-37
gi|294816230|ref|ZP_06774873.1| 4-methyl-5 B-hydroxyethyl -thiaz... 158 3e-37
gi|226312574|ref|YP_002772468.1| hypothetical protein BBR47_2987... 158 3e-37
gi|290963231|ref|YP_003494413.1| hypothetical protein SCAB_89551... 158 5e-37
gi|302769864|ref|XP_002968351.1| hypothetical protein SELMODRAFT... 157 5e-37
gi|339007797|ref|ZP_08640371.1| putative 4-methyl-5(B-hydroxyeth... 157 9e-37
gi|302765010|ref|XP_002965926.1| hypothetical protein SELMODRAFT... 155 2e-36
gi|145225840|ref|YP_001136518.1| ThiJ/PfpI domain-containing pro... 155 3e-36
gi|149924861|ref|ZP_01913198.1| ThiJ/PfpI [Plesiocystis pacifica... 155 4e-36
gi|302765006|ref|XP_002965924.1| hypothetical protein SELMODRAFT... 154 8e-36
gi|120401988|ref|YP_951817.1| ThiJ/PfpI domain-containing protei... 153 1e-35
gi|312197660|ref|YP_004017721.1| ThiJ/PfpI domain-containing pro... 151 4e-35
gi|328886478|emb|CCA59717.1| ThiJ or PfpI family protein [Strept... 150 6e-35
gi|262204278|ref|YP_003275486.1| thiJ/PfpI domain-containing pro... 150 1e-34
gi|343924457|ref|ZP_08764006.1| putative ThiJ/PfpI family protei... 146 2e-33
gi|333919956|ref|YP_004493537.1| ThiJ/PfpI domain-containing pro... 146 2e-33
gi|118471850|ref|YP_885501.1| isonitrile hydratase [Mycobacteriu... 145 2e-33
gi|317130619|ref|YP_004096901.1| ThiJ/PfpI domain-containing pro... 143 1e-32
gi|167461180|ref|ZP_02326269.1| 4-methyl-5(B-hydroxyethyl)-thiaz... 143 1e-32
gi|126650641|ref|ZP_01722864.1| putative 4-methyl-5(B-hydroxyeth... 142 2e-32
gi|302541561|ref|ZP_07293903.1| putative 4-methyl-5(B-hydroxyeth... 142 3e-32
gi|169628040|ref|YP_001701689.1| hypothetical protein MAB_0943 [... 142 3e-32
gi|159898619|ref|YP_001544866.1| ThiJ/PfpI domain-containing pro... 141 4e-32
gi|29828208|ref|NP_822842.1| 4-methyl-5(B-hydroxyethyl)-thiazole... 141 5e-32
gi|167461306|ref|ZP_02326395.1| 4-methyl-5(B-hydroxyethyl)-thiaz... 141 5e-32
>gi|253796967|ref|YP_003029968.1| hypothetical protein TBMG_00051 [Mycobacterium tuberculosis KZN
1435]
gi|308232626|ref|ZP_07416680.2| hypothetical protein TMAG_00722 [Mycobacterium tuberculosis SUMu001]
gi|308369291|ref|ZP_07417211.2| hypothetical protein TMBG_02516 [Mycobacterium tuberculosis SUMu002]
24 more sequence titles
Length=212
Score = 379 bits (973), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW
Sbjct 26 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE
Sbjct 86 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL
Sbjct 146 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 205
Query 181 EFYQHRL 187
EFYQHRL
Sbjct 206 EFYQHRL 212
>gi|345461991|ref|NP_214566.2| hypothetical protein Rv0052 [Mycobacterium tuberculosis H37Rv]
Length=191
Score = 379 bits (973), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW
Sbjct 5 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 64
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE
Sbjct 65 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 124
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL
Sbjct 125 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 184
Query 181 EFYQHRL 187
EFYQHRL
Sbjct 185 EFYQHRL 191
>gi|15839429|ref|NP_334466.1| hypothetical protein MT0058 [Mycobacterium tuberculosis CDC1551]
gi|254233451|ref|ZP_04926777.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254366510|ref|ZP_04982554.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|13879101|gb|AAK44280.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme, putative [Mycobacterium tuberculosis CDC1551]
gi|124603244|gb|EAY61519.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134152022|gb|EBA44067.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|323717391|gb|EGB26596.1| hypothetical protein TMMG_00471 [Mycobacterium tuberculosis CDC1551A]
Length=212
Score = 379 bits (973), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW
Sbjct 26 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE
Sbjct 86 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL
Sbjct 146 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 205
Query 181 EFYQHRL 187
EFYQHRL
Sbjct 206 EFYQHRL 212
>gi|31791229|ref|NP_853722.1| hypothetical protein Mb0053 [Mycobacterium bovis AF2122/97]
gi|121635962|ref|YP_976185.1| hypothetical protein BCG_0083 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659812|ref|YP_001281335.1| hypothetical protein MRA_0055 [Mycobacterium tuberculosis H37Ra]
41 more sequence titles
Length=187
Score = 377 bits (968), Expect = 4e-103, Method: Compositional matrix adjust.
Identities = 186/187 (99%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW
Sbjct 1 MPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE
Sbjct 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL
Sbjct 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
Query 181 EFYQHRL 187
EFYQHRL
Sbjct 181 EFYQHRL 187
>gi|339293128|gb|AEJ45239.1| hypothetical protein CCDC5079_0049 [Mycobacterium tuberculosis
CCDC5079]
Length=166
Score = 335 bits (860), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/166 (100%), Positives = 166/166 (100%), Gaps = 0/166 (0%)
Query 22 MLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVL 81
MLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVL
Sbjct 1 MLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVL 60
Query 82 AAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVEL 141
AAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVEL
Sbjct 61 AAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVEL 120
Query 142 LVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL 187
LVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
Sbjct 121 LVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL 166
>gi|289764166|ref|ZP_06523544.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289711672|gb|EFD75688.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=165
Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/166 (98%), Positives = 163/166 (99%), Gaps = 1/166 (0%)
Query 22 MLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVL 81
MLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHT + SVCTGGLVL
Sbjct 1 MLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTY-SHSVCTGGLVL 59
Query 82 AAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVEL 141
AAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVEL
Sbjct 60 AAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVITAAGVSSGIDMGLRLVEL 119
Query 142 LVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL 187
LVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
Sbjct 120 LVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL 165
>gi|254818594|ref|ZP_05223595.1| DJ-1/PfpI family protein [Mycobacterium intracellulare ATCC 13950]
Length=213
Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 131/186 (71%), Positives = 155/186 (84%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS +VVFVGHRRGEVR+DN MLG+ CDA FDE++ P+VV+FPGGIGTR LIHD+ + DW
Sbjct 27 IPSIEVVFVGHRRGEVRTDNGMLGVTCDATFDEVSAPEVVVFPGGIGTRQLIHDEAIRDW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R H +T TTSVCTG L+LAAAGLL GLTATTHW DL N+LGARYVP+RVVEHLP+
Sbjct 87 LRAVHPNTRFTTSVCTGSLLLAAAGLLEGLTATTHWGAADLLNNLGARYVPERVVEHLPQ 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV R+AA+A+QL+IEYDPQPP D+G+LAKA PAT
Sbjct 147 RIITAAGVSSGIDMALRLVELLVDRQAAQAAQLLIEYDPQPPFDSGALAKADPATLARVK 206
Query 181 EFYQHR 186
E+ R
Sbjct 207 EYMAAR 212
>gi|342860218|ref|ZP_08716870.1| DJ-1/PfpI family protein [Mycobacterium colombiense CECT 3035]
gi|342132596|gb|EGT85825.1| DJ-1/PfpI family protein [Mycobacterium colombiense CECT 3035]
Length=213
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/186 (70%), Positives = 155/186 (84%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS DVVFVGHRRGEVR++N MLG+ CDA FDE+ PDVV+FPGGIGTR L+HD+ + W
Sbjct 27 IPSMDVVFVGHRRGEVRTENGMLGVSCDATFDEVDAPDVVVFPGGIGTRQLVHDEAIRAW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H +T TTSVCTG L+LAAAGLL+GLTATTHWR DL N LGARYVP+RVVEHLP+
Sbjct 87 LQAVHPNTTFTTSVCTGALLLAAAGLLDGLTATTHWRAADLLNGLGARYVPERVVEHLPQ 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV REAA+A+QL+IEYDPQPP D+G+LAK+ AT A
Sbjct 147 RIITAAGVSSGIDMALRLVELLVDREAAQAAQLLIEYDPQPPFDSGALAKSDAATVARAH 206
Query 181 EFYQHR 186
E+ + R
Sbjct 207 EYLEAR 212
>gi|183980106|ref|YP_001848397.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183173432|gb|ACC38542.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=212
Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/186 (70%), Positives = 153/186 (83%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS DVVF+GH+RGEVR++N MLG+ CDA F E+ PDVV+FPGGIGTR L+ D+T+ W
Sbjct 26 IPSIDVVFIGHQRGEVRTENGMLGVTCDATFAEVDAPDVVVFPGGIGTRGLLEDETIRGW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H HT TTSVCTG L+LAAAGLL+GLTATTHWR +L N LGARYVPQRVVEHLP+
Sbjct 86 LQAVHPHTRFTTSVCTGALLLAAAGLLDGLTATTHWRAAELLNGLGARYVPQRVVEHLPQ 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDMGLRLVELLV REAA+A+QL+IEYDP+PP DAGSLAKA A+
Sbjct 146 RIITAAGVSSGIDMGLRLVELLVDREAAQAAQLLIEYDPEPPFDAGSLAKADEGVRARAI 205
Query 181 EFYQHR 186
EF R
Sbjct 206 EFLDSR 211
>gi|118615982|ref|YP_904314.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568092|gb|ABL02843.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=212
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/186 (70%), Positives = 152/186 (82%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS DVVF+GH+RGEVR++N MLG+ CDA FDE+ PDVV FPGGIGTR L+ D+T+ W
Sbjct 26 IPSIDVVFIGHQRGEVRTENGMLGVTCDATFDEVDAPDVVAFPGGIGTRGLLEDETIRGW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H HT TTSVCTG L+LAAAGLL+GLTATTHWR +L N LGARYVPQRVVEHLP+
Sbjct 86 LQAVHPHTRFTTSVCTGALLLAAAGLLDGLTATTHWRAAELLNGLGARYVPQRVVEHLPQ 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDMGLRLVELLV REAA+ +QL+IEYDP+PP DAGSLAKA A+
Sbjct 146 RIITAAGVSSGIDMGLRLVELLVDREAAQVTQLLIEYDPEPPFDAGSLAKADEGVRARAI 205
Query 181 EFYQHR 186
EF R
Sbjct 206 EFLDSR 211
>gi|336459418|gb|EGO38360.1| transcriptional regulator containing an amidase domain and AraC-type
DNA-binding HTH [Mycobacterium avium subsp. paratuberculosis
S397]
Length=213
Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/186 (70%), Positives = 150/186 (81%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS VVFVG RRGEVR++N MLGL CDA FDE++ PDVV+FPGGIGTR LIHD+ V W
Sbjct 27 IPSVQVVFVGQRRGEVRTENGMLGLACDATFDEVSAPDVVVFPGGIGTRQLIHDEAVRAW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H HT TTSVCTG L+LAAAGLL+GLTATTHWR DL N LGARYV QRVVEHLP+
Sbjct 87 LQAVHPHTRFTTSVCTGALLLAAAGLLDGLTATTHWRAADLLNGLGARYVEQRVVEHLPQ 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV R+AA+A+QL+IEYDPQPP D+G+ KA AT A
Sbjct 147 RIITAAGVSSGIDMALRLVELLVDRQAAQAAQLLIEYDPQPPFDSGAFGKADAATVARAE 206
Query 181 EFYQHR 186
E+ R
Sbjct 207 EYLTGR 212
>gi|41406164|ref|NP_959000.1| hypothetical protein MAP0066 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394512|gb|AAS02383.1| hypothetical protein MAP_0066 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=213
Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/186 (70%), Positives = 150/186 (81%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS VVFVG RRGEVR++N MLGL CDA FDE++ PDVV+FPGGIGTR LIHD+ V W
Sbjct 27 IPSVQVVFVGQRRGEVRTENGMLGLACDATFDEVSAPDVVVFPGGIGTRQLIHDEAVRAW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H HT TTSVCTG L+LAAAGLL+GLTATTHWR DL N LGARYV QRVVEHLP+
Sbjct 87 LQAVHPHTRFTTSVCTGALLLAAAGLLDGLTATTHWRAADLLNGLGARYVEQRVVEHLPQ 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV R+AA+A+QL+IEYDPQPP D+G+ KA AT A
Sbjct 147 RIITAAGVSSGIDMALRLVELLVDRQAAQAAQLLIEYDPQPPFDSGAFGKADAATVARAE 206
Query 181 EFYQHR 186
E+ R
Sbjct 207 EYLTGR 212
>gi|240168782|ref|ZP_04747441.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=212
Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 128/186 (69%), Positives = 152/186 (82%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS DVVFVGHRRGE+R++N MLGL+CDA F+E+ PDVV+FPGGIGTR L+ D+ + W
Sbjct 26 IPSIDVVFVGHRRGELRTENGMLGLVCDATFEEVGTPDVVVFPGGIGTRVLLDDEIICGW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H HT TTSVCTG L+LAAAGLL+GLTATTHWR +L N LGARYVP RVVEHLP+
Sbjct 86 LQSVHPHTRFTTSVCTGALLLAAAGLLDGLTATTHWRAAELLNELGARYVPDRVVEHLPQ 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV REAA+A+QL+IEYDP+PP +GSLA A AT A
Sbjct 146 RIITAAGVSSGIDMALRLVELLVDREAAQAAQLLIEYDPRPPFASGSLANADEATRIRAA 205
Query 181 EFYQHR 186
EF + R
Sbjct 206 EFLRSR 211
>gi|118465152|ref|YP_879373.1| DJ-1/PfpI family protein [Mycobacterium avium 104]
gi|254773119|ref|ZP_05214635.1| DJ-1/PfpI family protein [Mycobacterium avium subsp. avium ATCC
25291]
gi|118166439|gb|ABK67336.1| DJ-1/PfpI family protein [Mycobacterium avium 104]
Length=213
Score = 243 bits (620), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 129/186 (70%), Positives = 150/186 (81%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+PS VVF+G RRGEVR++N MLGL CDA FDE++ PDVV+FPGGIGTR LIHD+ V W
Sbjct 27 IPSVQVVFIGQRRGEVRTENGMLGLACDATFDEVSAPDVVVFPGGIGTRQLIHDEAVRAW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H HT TTSVCTG L+LAAAGLL+GLTATTHWR DL LGARYV QRVVEHLP+
Sbjct 87 LQAVHPHTRFTTSVCTGALLLAAAGLLDGLTATTHWRAADLLKGLGARYVEQRVVEHLPQ 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV R+AA+A+QL+IEYDPQPP D+G+L KA AT A
Sbjct 147 RIITAAGVSSGIDMALRLVELLVDRQAAQAAQLLIEYDPQPPFDSGALGKADAATVARAE 206
Query 181 EFYQHR 186
E+ R
Sbjct 207 EYLTGR 212
>gi|296167067|ref|ZP_06849479.1| DJ-1/PfpI family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897624|gb|EFG77218.1| DJ-1/PfpI family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=213
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/186 (71%), Positives = 150/186 (81%), Gaps = 0/186 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VPS +VVF+GHRRGEVR++N MLGL CDA FDE+T PDVV+FPGGIGTR LIHD T+ W
Sbjct 27 VPSVEVVFIGHRRGEVRTENGMLGLCCDARFDEVTSPDVVLFPGGIGTRRLIHDDTIRAW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
++ H T TTSVCTG L+LA AGLL+GLTATTHWR L N LGARYVP RVVEHL +
Sbjct 87 LQAVHPTTTFTTSVCTGALLLAGAGLLDGLTATTHWRASGLLNELGARYVPDRVVEHLSQ 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R+ITAAGVSSGIDM LRLVELLV R+AA+A+QL+IEYDPQPP D+GSLAKA AT A
Sbjct 147 RIITAAGVSSGIDMALRLVELLVDRQAAQAAQLLIEYDPQPPFDSGSLAKADRATVDRAT 206
Query 181 EFYQHR 186
E+ R
Sbjct 207 EYLDAR 212
>gi|331694272|ref|YP_004330511.1| ThiJ/PfpI domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326948961|gb|AEA22658.1| ThiJ/PfpI domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
Length=212
Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/172 (64%), Positives = 130/172 (76%), Gaps = 0/172 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VP DVVFVG RRGEVR++N MLGL DA F ++ PDVV+ PGGIG+R L+ ++DW
Sbjct 26 VPDIDVVFVGERRGEVRTENGMLGLSVDATFADIPSPDVVVVPGGIGSRALLAGGPLVDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VR AH T TTSVC+G LVL AAGLL+GLTATTHW D+ GA V QRVVEHLPE
Sbjct 86 VRAAHPGTRFTTSVCSGALVLGAAGLLDGLTATTHWGAFDVLARFGATPVTQRVVEHLPE 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKAS 172
R++TAAGVS+GIDM LRL+ELLV AA+A+Q+ IEYDPQPP DAG +K S
Sbjct 146 RIVTAAGVSAGIDMALRLLELLVDDVAAQAAQVFIEYDPQPPFDAGHPSKVS 197
>gi|333991294|ref|YP_004523908.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333487262|gb|AEF36654.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=209
Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/182 (68%), Positives = 142/182 (79%), Gaps = 0/182 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VP + VFVGHR GEVRSDN MLG+ CDA FDE+ RPDVV+ PGG+GTR L+ D +LDW
Sbjct 26 VPEVETVFVGHRHGEVRSDNGMLGITCDARFDEVIRPDVVVVPGGVGTRVLLDDAELLDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+ H HT TTSVCTG L+LAAAGLL+GLTATTHW +L LGARYV QRVVEHLP+
Sbjct 86 LRQIHPHTRFTTSVCTGSLLLAAAGLLDGLTATTHWGAIELLEHLGARYVEQRVVEHLPQ 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
R++T+AGVSSGIDM LRLVELLV E A+A+QLMIEYDPQPP D GSL KA A A
Sbjct 146 RILTSAGVSSGIDMALRLVELLVDTETAQAAQLMIEYDPQPPFDCGSLPKADEAVRNRAA 205
Query 181 EF 182
+
Sbjct 206 QL 207
>gi|168032228|ref|XP_001768621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680120|gb|EDQ66559.1| predicted protein [Physcomitrella patens subsp. patens]
Length=275
Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/186 (50%), Positives = 123/186 (67%), Gaps = 2/186 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P+ +VV V H +G +R++ +++G A FDE+ PD+VI PGG G LI D+ +LDW
Sbjct 85 LPNVNVVLVSHSKGIIRAEKSLIGFEATATFDEVQEPDIVIVPGGYGVNALIRDKPILDW 144
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+ H TL TTSVCTG L+LAAAG+LNGL AT HWRV + GA+ R+VE
Sbjct 145 IRKTHEKTLYTTSVCTGSLLLAAAGILNGLEATCHWRVLPELSKFGAKPTSSRIVES--G 202
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
++ITAAGVS+GIDMGL+LV LL + + QL+IEYDPQPP D GS A A P +A
Sbjct 203 KIITAAGVSAGIDMGLKLVALLSNDTTCKLIQLVIEYDPQPPFDCGSPAAAGPELVSMAR 262
Query 181 EFYQHR 186
+ +
Sbjct 263 AYAEKN 268
>gi|254548984|ref|ZP_05139431.1| hypothetical protein Mtube_00721 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=115
Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW
Sbjct 26 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGL 90
VREAHRHTLLTTSVCTGGLVLAAAGLLNGL
Sbjct 86 VREAHRHTLLTTSVCTGGLVLAAAGLLNGL 115
>gi|302785824|ref|XP_002974683.1| hypothetical protein SELMODRAFT_442624 [Selaginella moellendorffii]
gi|300157578|gb|EFJ24203.1| hypothetical protein SELMODRAFT_442624 [Selaginella moellendorffii]
Length=802
Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/187 (50%), Positives = 123/187 (66%), Gaps = 2/187 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P+ +V+FV H+ G + ML L A+FD++TRP +++ PGG+GTR L+ D+ +LDW
Sbjct 591 LPNVEVLFVSHQPGLYAAGMGMLTLQATASFDQVTRPQILVVPGGMGTRRLLQDRVILDW 650
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+ H HTL T SVCTG L+L AAGLL G+ ATTHW +L GA+ V R+V
Sbjct 651 IRKVHEHTLYTASVCTGSLLLGAAGLLKGIEATTHWNSHELLAEFGAKPVSSRIVRQ--G 708
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
++ITAAGVS+GIDM L+L LL A+ QL IEYDPQPP D+GS+AKA P A
Sbjct 709 KIITAAGVSAGIDMALQLAALLTDEATAKTLQLFIEYDPQPPFDSGSVAKAGPEVVSRAK 768
Query 181 EFYQHRL 187
E RL
Sbjct 769 ELSSKRL 775
>gi|302759951|ref|XP_002963398.1| hypothetical protein SELMODRAFT_438544 [Selaginella moellendorffii]
gi|300168666|gb|EFJ35269.1| hypothetical protein SELMODRAFT_438544 [Selaginella moellendorffii]
Length=809
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/187 (50%), Positives = 123/187 (66%), Gaps = 2/187 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P+ +V+FV H+ G + ML L A+FD++TRP +++ PGG+GTR L+ D+ +LDW
Sbjct 597 LPNVEVLFVSHQPGLYAAGMGMLTLQATASFDQVTRPQILVVPGGMGTRRLLQDRVILDW 656
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+ H HTL T SVCTG L+L AAGLL G+ ATTHW +L GA+ V R+V
Sbjct 657 IRKVHEHTLYTASVCTGSLLLGAAGLLKGIEATTHWNSHELLAEFGAKPVSSRIVRQ--G 714
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
++ITAAGVS+GIDM L+L LL A+ QL IEYDPQPP D+GS+AKA P A
Sbjct 715 KIITAAGVSAGIDMALQLAALLTDEATAKTLQLFIEYDPQPPFDSGSVAKAGPEVVSRAK 774
Query 181 EFYQHRL 187
E RL
Sbjct 775 ELSSKRL 781
>gi|302784298|ref|XP_002973921.1| hypothetical protein SELMODRAFT_100248 [Selaginella moellendorffii]
gi|300158253|gb|EFJ24876.1| hypothetical protein SELMODRAFT_100248 [Selaginella moellendorffii]
Length=219
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/185 (49%), Positives = 117/185 (64%), Gaps = 7/185 (3%)
Query 1 VPSFDVVFVGHRRGEVRSDNAM---LGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTV 57
VP VVFV + G + + A LGL A++ ++ PDV++ PGG T+ +H + +
Sbjct 33 VPGVSVVFVSDKPGLILAGEAQQSHLGLRATASYKDVPHPDVIVVPGGPPTKIPLHHKPL 92
Query 58 LDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEH 117
LDW+R+AH TL TTSVCTG L+L +AGLL GL TTHW GA+ +R ++
Sbjct 93 LDWIRKAHETTLFTTSVCTGALILGSAGLLTGLECTTHWSSYKKLEEFGAKASAKRYIQQ 152
Query 118 LPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHR 177
++ITAAGVSSGIDM L L LL + AE QL++EYDPQPP D+GSLAKASP
Sbjct 153 --GKIITAAGVSSGIDMALYLAALLKDKVIAEGVQLLVEYDPQPPFDSGSLAKASPEV-- 208
Query 178 LALEF 182
LAL F
Sbjct 209 LALPF 213
>gi|39933002|gb|AAR32679.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces hygroscopicus]
Length=270
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/185 (51%), Positives = 108/185 (59%), Gaps = 2/185 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P V FVG +G V+ L A + E+ R DV++ PGG ++ D L W
Sbjct 83 MPGASVRFVGAEKGPVKDALGSLPTYVPATYSEVERCDVLLIPGGRSVEAMVADADFLAW 142
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VR H T TTSVCTG LVL AAGLL GLTATTHW + S GA Y PQR V
Sbjct 143 VRRIHARTRFTTSVCTGSLVLGAAGLLKGLTATTHWSGAEALESYGAAYTPQRTVRQ--G 200
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
+VIT+AGVSSGIDM L L LL A+A QL IEYDPQPP D+GSLAKAS A R
Sbjct 201 KVITSAGVSSGIDMALTLAALLTDEVTAQAIQLWIEYDPQPPFDSGSLAKASDAVKRRVF 260
Query 181 EFYQH 185
E +
Sbjct 261 ELVKE 265
>gi|302548312|ref|ZP_07300654.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces hygroscopicus ATCC 53653]
gi|302465930|gb|EFL29023.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces himastatinicus ATCC 53653]
Length=260
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/173 (49%), Positives = 107/173 (62%), Gaps = 2/173 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
VP V V + G +R+D L L+ + + D + R DV++ PGG GT+ + + VLDW
Sbjct 75 VPRVTVTMVAEKAGRIRTDTGELTLVAERSLDSVDRADVLVVPGGSGTKATMENTVVLDW 134
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R HR ++ TTSVCTG L+L AAGLL GL ATT W + LGA Y P R VE
Sbjct 135 IRHIHRRSVWTTSVCTGSLILGAAGLLRGLPATTFWAGRSYLADLGAEYTPGRFVEA--G 192
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASP 173
++ITAAGVS+GIDMGL L L + A+A QL +EYDP PP D GS KA P
Sbjct 193 KIITAAGVSAGIDMGLHLAARLSDEKVAQAMQLAVEYDPDPPFDTGSPEKAGP 245
>gi|302771445|ref|XP_002969141.1| hypothetical protein SELMODRAFT_91146 [Selaginella moellendorffii]
gi|300163646|gb|EFJ30257.1| hypothetical protein SELMODRAFT_91146 [Selaginella moellendorffii]
Length=219
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/185 (48%), Positives = 115/185 (63%), Gaps = 7/185 (3%)
Query 1 VPSFDVVFVGHRRGEV---RSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTV 57
VP VVFV + G + + ++ LGL A++ ++ PDV++ PGG T+ + + +
Sbjct 33 VPGVSVVFVSDKPGLILAGEAQDSHLGLRATASYKDVPHPDVIVVPGGPPTKIPLQHKPL 92
Query 58 LDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEH 117
LDW+R+AH TL TTSVCTG L+L +AGLL GL TTHW GA+ +R ++
Sbjct 93 LDWIRKAHETTLFTTSVCTGALILGSAGLLTGLECTTHWSSYKKLEEFGAKASAKRYIQQ 152
Query 118 LPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHR 177
++ITAAGVSSGIDM L L LL + AE QL++EYDPQPP D GS AKASP
Sbjct 153 --GKIITAAGVSSGIDMALYLAALLKDKVIAEGVQLLVEYDPQPPFDCGSRAKASPEV-- 208
Query 178 LALEF 182
LAL F
Sbjct 209 LALPF 213
>gi|254391851|ref|ZP_05007045.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|197705532|gb|EDY51344.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length=213
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/184 (47%), Positives = 110/184 (60%), Gaps = 4/184 (2%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGG--IGTRTLIHDQTVL 58
VP V V R G VR+D LG+ + + ++TRPDV++ PGG GT + D +L
Sbjct 26 VPGVRVTTVATRAGLVRTDTGELGIAAEKSLPQVTRPDVLVVPGGGERGTTATMADARIL 85
Query 59 DWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHL 118
+W+R HRHT+ TTS+CTG L+L AAGLL GL ATT+W + +GA Y P R VE
Sbjct 86 EWIRRVHRHTVWTTSICTGSLILGAAGLLRGLPATTYWASRPYVKEVGAVYTPGRFVET- 144
Query 119 PERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRL 178
R+ITAAGVS+GIDMGL L L + A +L +EYDP+PP G A T L
Sbjct 145 -GRIITAAGVSAGIDMGLHLAARLSDEQVGRAMELALEYDPEPPFRTGDPDTADERTRAL 203
Query 179 ALEF 182
AL+
Sbjct 204 ALKL 207
>gi|294816230|ref|ZP_06774873.1| 4-methyl-5 B-hydroxyethyl -thiazole monophosphate biosynthesis
enzyme [Streptomyces clavuligerus ATCC 27064]
gi|326444560|ref|ZP_08219294.1| hypothetical protein SclaA2_26001 [Streptomyces clavuligerus
ATCC 27064]
gi|294328829|gb|EFG10472.1| 4-methyl-5 B-hydroxyethyl -thiazole monophosphate biosynthesis
enzyme [Streptomyces clavuligerus ATCC 27064]
Length=257
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/184 (47%), Positives = 110/184 (60%), Gaps = 4/184 (2%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGG--IGTRTLIHDQTVL 58
VP V V R G VR+D LG+ + + ++TRPDV++ PGG GT + D +L
Sbjct 70 VPGVRVTTVATRAGLVRTDTGELGIAAEKSLPQVTRPDVLVVPGGGERGTTATMADARIL 129
Query 59 DWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHL 118
+W+R HRHT+ TTS+CTG L+L AAGLL GL ATT+W + +GA Y P R VE
Sbjct 130 EWIRRVHRHTVWTTSICTGSLILGAAGLLRGLPATTYWASRPYVKEVGAVYTPGRFVET- 188
Query 119 PERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRL 178
R+ITAAGVS+GIDMGL L L + A +L +EYDP+PP G A T L
Sbjct 189 -GRIITAAGVSAGIDMGLHLAARLSDEQVGRAMELALEYDPEPPFRTGDPDTADERTRAL 247
Query 179 ALEF 182
AL+
Sbjct 248 ALKL 251
>gi|226312574|ref|YP_002772468.1| hypothetical protein BBR47_29870 [Brevibacillus brevis NBRC 100599]
gi|226095522|dbj|BAH43964.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length=218
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/179 (45%), Positives = 116/179 (65%), Gaps = 2/179 (1%)
Query 5 DVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREA 64
+ FV +G ++ D+ M L + + E+ DV+I PGGIG + L++D+ L+W+R+
Sbjct 30 KIKFVAKEKGLIQLDSKMGYLHAEYCYAEVPSMDVLIVPGGIGCKELMNDEETLNWIRQL 89
Query 65 HRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVIT 124
H+ + TTSVC+G +VL AAGLL G+ AT+HW V + +LGA +RVV H +++T
Sbjct 90 HKTSKWTTSVCSGSMVLGAAGLLEGVPATSHWFVCESLRALGAIPQEERVVHH--GKIVT 147
Query 125 AAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFY 183
AAGVSSGIDM L++V E A+A+QL +EYDP+PP DAGS+ A PA + + Y
Sbjct 148 AAGVSSGIDMALQVVAWEFGVEIAQATQLTLEYDPKPPFDAGSVKTAPPAIVQYTKKVY 206
>gi|290963231|ref|YP_003494413.1| hypothetical protein SCAB_89551 [Streptomyces scabiei 87.22]
gi|260652757|emb|CBG75890.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=253
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/185 (46%), Positives = 113/185 (62%), Gaps = 5/185 (2%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPG--GIGTRTLIHDQTVL 58
+P V + RRG VR+D A + +L + + E+ R DV++ PG GT +++Q +L
Sbjct 65 LPDATVTMIAERRGPVRTDTADVAVLAERSLAEVDRLDVLLVPGAGNRGTVEAMNNQALL 124
Query 59 DWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNS-LGARYVPQRVVEH 117
W+RE HRHT TTSVCTG +VLAAAGLL G ATT+W D S Y+PQR V
Sbjct 125 RWIREMHRHTRWTTSVCTGSIVLAAAGLLTGRRATTYWASADYLRSTFDVTYLPQRYVRS 184
Query 118 LPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHR 177
++IT+AGVS+G+DM L L L+ + A+A QL +EYDPQPP D+G A ASP
Sbjct 185 --GKIITSAGVSAGVDMSLYLASLIADDDTAKAIQLAVEYDPQPPFDSGDAAAASPRLKE 242
Query 178 LALEF 182
AL
Sbjct 243 RALRL 247
>gi|302769864|ref|XP_002968351.1| hypothetical protein SELMODRAFT_227780 [Selaginella moellendorffii]
gi|300163995|gb|EFJ30605.1| hypothetical protein SELMODRAFT_227780 [Selaginella moellendorffii]
Length=215
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 110/183 (61%), Gaps = 2/183 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P V FV + G V +D + + F++L PD+++ PGG + + +LD+
Sbjct 30 LPGVSVTFVSDKPGLVVADEGTFKIEASSGFEDLPNPDILLVPGGPTKLLPLDHKPLLDY 89
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+AH T TTSVCTG L+L AAGLL G+ ATTHW GA+ QR ++
Sbjct 90 IRKAHECTTFTTSVCTGALILGAAGLLKGVKATTHWAAYPQLKEYGAKVTSQRYIKQ--G 147
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLAL 180
+++TAAGVSSGIDM + L ++ + + A+A QLMIEYDPQPP DAGS KA +LA
Sbjct 148 KIVTAAGVSSGIDMAIYLASIITNEKIAKAVQLMIEYDPQPPYDAGSPCKAGEEIVKLAH 207
Query 181 EFY 183
E +
Sbjct 208 ELW 210
>gi|339007797|ref|ZP_08640371.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Brevibacillus laterosporus LMG 15441]
gi|338775000|gb|EGP34529.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Brevibacillus laterosporus LMG 15441]
Length=218
Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/177 (47%), Positives = 115/177 (65%), Gaps = 5/177 (2%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGI--GTRTLIHDQTVL 58
V +V FV +G ++ D+ M L D +F E+T D+++ PG ++L++D+ L
Sbjct 26 VKGNEVKFVAKDKGLIKLDSKMGYLHADFSFSEVTSADILVVPGCCPPNYKSLMNDEDTL 85
Query 59 DWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHL 118
+W+R+ H+ T TTSVCTG L+L+AAGLL GL AT+HW DL SLGA +RVV
Sbjct 86 NWIRKIHKTTKWTTSVCTGSLILSAAGLLKGLKATSHWSSLDLLQSLGAIPTDERVVRQ- 144
Query 119 PERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPAT 175
+++TAAGVSSGIDM L+LV E +++ QL++EYDP PP D GSL KA PA+
Sbjct 145 -GKIVTAAGVSSGIDMALQLVAWESGEEMSKSIQLLMEYDPMPPFDTGSLKKA-PAS 199
>gi|302765010|ref|XP_002965926.1| hypothetical protein SELMODRAFT_407075 [Selaginella moellendorffii]
gi|300166740|gb|EFJ33346.1| hypothetical protein SELMODRAFT_407075 [Selaginella moellendorffii]
Length=673
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/177 (44%), Positives = 107/177 (61%), Gaps = 2/177 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P V FV + G V +D + A+F++L PD+++ PGG + + +LD+
Sbjct 33 LPGVSVTFVSDKPGLVVADEGRFKIEASASFEDLPNPDILLVPGGTPKLLPLDHKPLLDY 92
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+AH T TTSVCTG L+L AAGLL G+ ATTHW GA+ QR ++
Sbjct 93 IRKAHECTTFTTSVCTGALILGAAGLLKGVKATTHWAAYPQLKEYGAKVTSQRYIKQ--G 150
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHR 177
+++TAAGVSSGIDM + L ++ + + A+A QLMIEYDPQPP DAGS KA R
Sbjct 151 KIVTAAGVSSGIDMAIYLASIITNEKIAKAVQLMIEYDPQPPYDAGSPCKAGEEITR 207
>gi|145225840|ref|YP_001136518.1| ThiJ/PfpI domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315442452|ref|YP_004075331.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Mycobacterium sp. Spyr1]
gi|145218326|gb|ABP47730.1| ThiJ/PfpI domain protein [Mycobacterium gilvum PYR-GCK]
gi|315260755|gb|ADT97496.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Mycobacterium sp. Spyr1]
Length=246
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/180 (47%), Positives = 115/180 (64%), Gaps = 2/180 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +V FV H G + +D+ +L + +FDE PDV++ PGG T D+ VL W
Sbjct 26 LPDTEVRFVWHEPGPIAADSHVLLVGATHSFDETPSPDVILIPGGFATMEHARDEVVLAW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYV-PQRVVEHLP 119
VR AH + TTSVC+G ++LAAAG+L+G AT+HW + +LGA+ V QR+VE
Sbjct 86 VRRAHETSTWTTSVCSGSVILAAAGVLDGKRATSHWAALPVLKTLGAQPVGDQRIVE-AD 144
Query 120 ERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLA 179
+ +TAAGVS+GID+GL L + E A+A QL +EYDPQPP D+G ++KAS T LA
Sbjct 145 AKTVTAAGVSAGIDLGLWLAGRIAGEEKAKAIQLSMEYDPQPPFDSGHMSKASAGTKALA 204
>gi|149924861|ref|ZP_01913198.1| ThiJ/PfpI [Plesiocystis pacifica SIR-1]
gi|149814276|gb|EDM73881.1| ThiJ/PfpI [Plesiocystis pacifica SIR-1]
Length=246
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/174 (49%), Positives = 111/174 (64%), Gaps = 4/174 (2%)
Query 2 PSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIG-TRTLIHDQTVLDW 60
P+ D+ FV G + +D+ +L + AF E RPDV++ PG T T++ D VL W
Sbjct 31 PNIDLRFVWKEVGPIVTDSQVLVIGATHAFSETRRPDVILIPGSSADTATMMADADVLAW 90
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQ-RVVEHLP 119
+R AH HT TTSVC+G L+LAAAG+L+G ATTHW V + GA P RVV
Sbjct 91 IRSAHPHTRFTTSVCSGALILAAAGVLDGHPATTHWMVTKSLLAFGAEPRPHDRVVRS-- 148
Query 120 ERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASP 173
++ITAAGVS+GIDM L L+ L +AA+ SQL+IEYDPQPP D G ++KA P
Sbjct 149 GKIITAAGVSAGIDMALSLLAELEGEQAAKISQLLIEYDPQPPFDCGHVSKADP 202
>gi|302765006|ref|XP_002965924.1| hypothetical protein SELMODRAFT_439354 [Selaginella moellendorffii]
gi|300166738|gb|EFJ33344.1| hypothetical protein SELMODRAFT_439354 [Selaginella moellendorffii]
Length=353
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/171 (44%), Positives = 106/171 (62%), Gaps = 2/171 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P V FV + G V +D + A+F++L PD+++ PGG + + +LD+
Sbjct 33 LPGVSVTFVSDKPGLVVADEGRFKIEASASFEDLPNPDILLVPGGTPKLLPLDHKPLLDY 92
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+AH T TTSVCTG L+L AAGLL G+ ATTHW GA+ QR ++
Sbjct 93 IRKAHECTTFTTSVCTGALILGAAGLLKGVKATTHWAAYPQLKEYGAKVTSQRYIKQ--G 150
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKA 171
+++TAAGVSSGIDM + L ++ + + A+A QLMIEYDPQPP DAG+ +A
Sbjct 151 KIVTAAGVSSGIDMAIYLASIITNEKIAKAVQLMIEYDPQPPYDAGTWLRA 201
>gi|120401988|ref|YP_951817.1| ThiJ/PfpI domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119954806|gb|ABM11811.1| ThiJ/PfpI domain protein [Mycobacterium vanbaalenii PYR-1]
Length=249
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/179 (44%), Positives = 112/179 (63%), Gaps = 0/179 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +V FV H G + +D+ +L + +FDE PD+++ PGG T D+ VLDW
Sbjct 26 LPDVEVRFVWHEPGPIAADSHVLLVGATHSFDETPSPDLILIPGGFATMEHARDEKVLDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
VR AHR + TTSVC+G ++LAA+G+L+G AT+HW + + G + V V +
Sbjct 86 VRRAHRTSTWTTSVCSGSVILAASGVLDGKRATSHWAALPVLKTFGVQPVGDERVVVADD 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLA 179
+ +TAAGVS+GID+GL L + A+A QL +EYDPQPP D+G ++KAS +T LA
Sbjct 146 KTVTAAGVSAGIDLGLWLAGQIAGESKAKAIQLSMEYDPQPPFDSGHMSKASASTKALA 204
>gi|312197660|ref|YP_004017721.1| ThiJ/PfpI domain-containing protein [Frankia sp. EuI1c]
gi|311228996|gb|ADP81851.1| ThiJ/PfpI domain-containing protein [Frankia sp. EuI1c]
Length=214
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/173 (50%), Positives = 106/173 (62%), Gaps = 2/173 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +VVF GHR G VRS+ LGL+ DA ++ PDVV+ PGG G L+ D+ V W
Sbjct 26 LPGAEVVFAGHRVGPVRSEGGRLGLIVDAELADVPAPDVVLVPGGPGQVALMDDEPVHAW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R ++ TTSVCTG LVLAAAGLL G AT++W D LGA +RVV +
Sbjct 86 LRAVDATSVWTTSVCTGSLVLAAAGLLTGRRATSYWLALDQLAELGAVPTAERVV--VDG 143
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASP 173
+ +TAAGVS+GIDM L L L A+A QL +EYDP PP DAGS A P
Sbjct 144 KYMTAAGVSAGIDMALTLAARLAGDSVAQALQLGVEYDPHPPFDAGSPRTAPP 196
>gi|328886478|emb|CCA59717.1| ThiJ or PfpI family protein [Streptomyces venezuelae ATCC 10712]
Length=214
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/171 (47%), Positives = 104/171 (61%), Gaps = 2/171 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P + VFV G VR+D L L+ D A E+ RPD+V+ PGG +R + D + W
Sbjct 26 LPGAETVFVAKEAGPVRNDQGSLALVADKALAEVPRPDIVLVPGGPDSRAAMDDPEIQAW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R A + TTSVCTG L+LAAAG+L+G ATTHW + +LG +RVV
Sbjct 86 LRTADETSTWTTSVCTGSLILAAAGVLDGRRATTHWLAHEELRALGVEPTGERVV--FDG 143
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKA 171
+ +TAAGVSSGIDM L L+ + E A+ QL+ EYDPQPP DAGS KA
Sbjct 144 KYVTAAGVSSGIDMALHLLGRIGGDETAQTIQLLTEYDPQPPYDAGSPDKA 194
>gi|262204278|ref|YP_003275486.1| thiJ/PfpI domain-containing protein [Gordonia bronchialis DSM
43247]
gi|262087625|gb|ACY23593.1| ThiJ/PfpI domain protein [Gordonia bronchialis DSM 43247]
Length=243
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/175 (48%), Positives = 108/175 (62%), Gaps = 1/175 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +V FV H G + +D+ +L + FDE RPDVV+ PGG G D+ VL W
Sbjct 27 LPDAEVRFVWHEPGPIAADSGVLLVGATHTFDETPRPDVVLIPGGPGCAEAARDERVLTW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R+AH TTSVCTG +VLAAAGLL+G AT+HW + GA+ V V H +
Sbjct 87 LRQAHPTATWTTSVCTGSIVLAAAGLLDGKRATSHWSAVAALSMYGAQAVTDERVVHAGD 146
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPAT 175
V+TAAGVS+GID+ L+L + E A+A QL IEYDPQPP D+G A AS +T
Sbjct 147 -VVTAAGVSAGIDLALQLAARIAGDERAKAIQLAIEYDPQPPFDSGDRATASTST 200
>gi|343924457|ref|ZP_08764006.1| putative ThiJ/PfpI family protein [Gordonia alkanivorans NBRC
16433]
gi|343765601|dbj|GAA10932.1| putative ThiJ/PfpI family protein [Gordonia alkanivorans NBRC
16433]
Length=240
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/177 (47%), Positives = 110/177 (63%), Gaps = 2/177 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +V FV H G V +D+ +L + +FDE PD+++ PGG G D+ +LDW
Sbjct 27 LPDAEVRFVTHEAGPVVADSGVLLIGATHSFDETPSPDLILVPGGPGCFGAAKDEKLLDW 86
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVP-QRVVEHLP 119
+R TTSVCTG +VLAAAGLL+GL ATTHW + G VP +R+V P
Sbjct 87 LRAVSPGAQWTTSVCTGSVVLAAAGLLDGLRATTHWSSLAALSLYGVTAVPDERIVRAGP 146
Query 120 -ERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPAT 175
ER++TAAGVS+GID+ L L + + + AEA QL IEYDPQP +D+G +KAS T
Sbjct 147 DERIVTAAGVSAGIDLALWLADEIAGTKKAEAIQLAIEYDPQPHLDSGHRSKASAGT 203
>gi|333919956|ref|YP_004493537.1| ThiJ/PfpI domain-containing protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333482177|gb|AEF40737.1| ThiJ/PfpI domain protein [Amycolicicoccus subflavus DQS3-9A1]
Length=259
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 111/183 (61%), Gaps = 2/183 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPG-GIGTRTLIHDQTVLD 59
+P ++ FV G V +D+ + + +FDE PD+V+ G G + T+ +Q +L+
Sbjct 26 IPGAELRFVWTEPGPVIADSGVFVMAATHSFDETPAPDIVLIGGSGAASGTIAKNQQLLE 85
Query 60 WVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLP 119
W+R H T T SVCTG +VLAAAGLL+G ATTHW + LGA+ + + H
Sbjct 86 WMRRVHETTQWTASVCTGSVVLAAAGLLDGKPATTHWSEMSVLKGLGAQAINDERIVHT- 144
Query 120 ERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLA 179
+++T AGVS+GID+ L LV + + A A+QL+IEYDPQPP D+GSL KA+ AT R
Sbjct 145 GKIVTGAGVSAGIDLALWLVGRIAGDDVARAAQLVIEYDPQPPYDSGSLQKATAATKRGV 204
Query 180 LEF 182
F
Sbjct 205 AAF 207
>gi|118471850|ref|YP_885501.1| isonitrile hydratase [Mycobacterium smegmatis str. MC2 155]
gi|118173137|gb|ABK74033.1| isonitrile hydratase, putative [Mycobacterium smegmatis str.
MC2 155]
Length=243
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/176 (44%), Positives = 102/176 (58%), Gaps = 0/176 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +V FV H G V +D+ +L + FDE PDVV+ PGG G+ D+ VL W
Sbjct 26 LPDAEVRFVWHEPGPVTADSGVLMVGATHTFDETPSPDVVLVPGGPGSSAAARDERVLAW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R H SVC+G +VLAAAGLL+G AT+HW G V + +
Sbjct 86 LRAVHPTANWVASVCSGSMVLAAAGLLDGKRATSHWGALSALKMCGVTAVSDERIVRADD 145
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATH 176
+VITAAGVS+GID+G+ L + A+A QL+IEYDPQPP DAG ++KAS T
Sbjct 146 KVITAAGVSAGIDLGMWLAGQIAGEAKAKAIQLLIEYDPQPPFDAGHMSKASATTK 201
>gi|317130619|ref|YP_004096901.1| ThiJ/PfpI domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315475567|gb|ADU32170.1| ThiJ/PfpI domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
Length=232
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/176 (40%), Positives = 108/176 (62%), Gaps = 3/176 (1%)
Query 5 DVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGG-IGTRTLIHDQTVLDWVRE 63
+V FVG +RGE+++D+ + + D++ D++I PG + + ++ VL W+R+
Sbjct 30 EVFFVGEKRGEIKADSGFIDFNAKYSIDDIHDADILIIPGSPVAFLKEMKNEKVLSWIRQ 89
Query 64 AHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVI 123
+ T TTSVCTG ++LAA GLL+GL AT+HW++ DL + A +RVVE + I
Sbjct 90 LDKQTKWTTSVCTGSIILAATGLLSGLKATSHWKIIDLLSDFDAIPTRERVVEQ--GKYI 147
Query 124 TAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLA 179
TAAGVSSG+DM L L + +A QL IEYDPQP ++G+ + + A ++A
Sbjct 148 TAAGVSSGVDMALYLTNKIAGDLETKAIQLTIEYDPQPMFNSGNYSSSDKAVIQVA 203
>gi|167461180|ref|ZP_02326269.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322383250|ref|ZP_08057059.1| hypothetical protein PL1_1911 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321152471|gb|EFX45259.1| hypothetical protein PL1_1911 [Paenibacillus larvae subsp. larvae
B-3650]
Length=218
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/185 (42%), Positives = 112/185 (61%), Gaps = 5/185 (2%)
Query 5 DVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGG--IGTRTLIHDQTVLDWVR 62
+V V +G ++ D+ M L D + E+T D+++ PG ++ I+D+ +L+W+R
Sbjct 30 EVKLVAKNKGLIKLDSKMGYLHADFSISEVTSADILVVPGCRPPNYKSPINDKDILNWIR 89
Query 63 EAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERV 122
+ H T TTSVCTG L+L AAGLLNGL AT+HW DL +S GA +RVV ++
Sbjct 90 QIHETTKWTTSVCTGSLILGAAGLLNGLKATSHWSCLDLLHSYGAISTNERVVRQ--GKI 147
Query 123 ITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKA-SPATHRLALE 181
IT+AGVSSGIDM L+LV + + QL++EYDP PP D+GS K +P +L +
Sbjct 148 ITSAGVSSGIDMALQLVAWESGEDIGKYVQLILEYDPMPPFDSGSPEKVPTPLIEQLKVA 207
Query 182 FYQHR 186
+ +
Sbjct 208 IQEVK 212
>gi|126650641|ref|ZP_01722864.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Bacillus sp. B14905]
gi|126592797|gb|EAZ86796.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Bacillus sp. B14905]
Length=218
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/168 (44%), Positives = 105/168 (63%), Gaps = 4/168 (2%)
Query 6 VVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGI--GTRTLIHDQTVLDWVRE 63
V FV +G ++ D+ M L D +F ++T D++I PG + ++D+T L+W+R
Sbjct 31 VKFVAKDKGLIKLDSKMGFLHADYSFSDITSADILIVPGCSPPNFKNPMNDETTLNWIRN 90
Query 64 AHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERVI 123
H+ T TTSVC G L+L+AAGLL G+ AT+HW D+ SLG +RVV +++
Sbjct 91 IHQTTKWTTSVCNGSLILSAAGLLKGMKATSHWGSFDILQSLGTIPTDERVVRQ--NKMV 148
Query 124 TAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKA 171
TAAGVSSGIDM L+LV + + QL++EYDPQPP + GS+ KA
Sbjct 149 TAAGVSSGIDMALQLVAWEFGDDLSMGVQLILEYDPQPPFNTGSVQKA 196
>gi|302541561|ref|ZP_07293903.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces hygroscopicus ATCC 53653]
gi|302459179|gb|EFL22272.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces himastatinicus ATCC 53653]
Length=210
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/171 (47%), Positives = 102/171 (60%), Gaps = 2/171 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P VFV RRG VR+D+ L L+ +A +E+ RPDVV+ PGG + VL W
Sbjct 26 LPGAQPVFVAERRGPVRNDSGSLQLVAEATLEEVARPDVVLVPGGPFPAEQQKNPEVLAW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R T TTSVCTG L+L +AGLL G ATTHW D +LG V +R V
Sbjct 86 LRAVDATTTWTTSVCTGSLILGSAGLLTGRRATTHWTAMDDLRALGVEAVDERYV--FDG 143
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKA 171
+ +TAAGVS+GIDMGL L + A+ QLM++YDPQPP D+GS KA
Sbjct 144 KYVTAAGVSAGIDMGLALAGRIAGDATAQTVQLMLQYDPQPPYDSGSPHKA 194
>gi|169628040|ref|YP_001701689.1| hypothetical protein MAB_0943 [Mycobacterium abscessus ATCC 19977]
gi|169240007|emb|CAM61035.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=259
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/169 (47%), Positives = 100/169 (60%), Gaps = 1/169 (0%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P +V FV H G V +D+ +L + +F E PDVV+ PGG GT D +LDW
Sbjct 31 IPDTEVRFVWHEPGPVTADSGVLVIGATHSFGETPAPDVVLVPGGPGTTMAARDDKLLDW 90
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYV-PQRVVEHLP 119
+R H TTSVC+G LVLAAAGLL G AT+HW L G V +R+V
Sbjct 91 LRRVHPAAAWTTSVCSGSLVLAAAGLLEGQRATSHWSTLPLLKPFGVTPVGDERIVRTGH 150
Query 120 ERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSL 168
++TAAGVS+GID+GL L + E A+A QL IEYDPQPP D+G +
Sbjct 151 AGLVTAAGVSAGIDLGLWLAGQIAGEERAKAIQLSIEYDPQPPFDSGHM 199
>gi|159898619|ref|YP_001544866.1| ThiJ/PfpI domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159891658|gb|ABX04738.1| ThiJ/PfpI domain protein [Herpetosiphon aurantiacus DSM 785]
Length=231
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/176 (44%), Positives = 104/176 (60%), Gaps = 4/176 (2%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P DV FV ++G + +D L L+ A +DEL P VV+ PGG GT + Q +L+W
Sbjct 42 LPDTDVYFVADQQGPIYADTGQLALVATATWDELPHPTVVVIPGGAGTMQALAHQPLLNW 101
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSL-GARYVPQRVVEHLP 119
++ A TSVCTG VL AAGLL+GL T+HW ++ + A Y +R ++
Sbjct 102 LQTAAPTVEWMTSVCTGVFVLGAAGLLHGLQVTSHWTSREFIHQYCAATYTAERFIQQ-- 159
Query 120 ERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVD-AGSLAKASPA 174
+ITAAGVS+GIDM L L + L S + A+A QL IEYDPQPP AG +A A
Sbjct 160 GNIITAAGVSAGIDMALFLAQQLSSSQTAQAIQLAIEYDPQPPFSGAGDFQQADQA 215
>gi|29828208|ref|NP_822842.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces avermitilis MA-4680]
gi|29605310|dbj|BAC69377.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Streptomyces avermitilis MA-4680]
Length=211
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/171 (50%), Positives = 106/171 (62%), Gaps = 2/171 (1%)
Query 1 VPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDW 60
+P + VFV R G VR+D L L D + E+ PD+V+ PGG G + + +LDW
Sbjct 26 LPGAETVFVAERTGPVRADTGALALTADKSLAEVPSPDLVVVPGGPGQTAQMENGVLLDW 85
Query 61 VREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPE 120
+R A + TTSVCTG L+LAAAGLL G AT+HW DL + GA +RVV
Sbjct 86 LRAADASSTWTTSVCTGSLLLAAAGLLKGRRATSHWLALDLLDRFGAAPTGERVV--FDG 143
Query 121 RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKA 171
+ +TAAGVSSGIDMGL L+ + E A+A QL+ EYDPQPP DAGS KA
Sbjct 144 KYVTAAGVSSGIDMGLALLGRIAGDEHAQAVQLLTEYDPQPPYDAGSPQKA 194
>gi|167461306|ref|ZP_02326395.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322381329|ref|ZP_08055332.1| hypothetical protein PL1_0243 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321154905|gb|EFX47176.1| hypothetical protein PL1_0243 [Paenibacillus larvae subsp. larvae
B-3650]
Length=218
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/168 (43%), Positives = 104/168 (62%), Gaps = 4/168 (2%)
Query 5 DVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGG--IGTRTLIHDQTVLDWVR 62
+V V +G ++ D+ M L D + E+ D+++ PG ++ I+D+ +++W+R
Sbjct 30 EVKLVAKNKGLIKLDSKMGYLHADFSISEVNSADILVVPGSRPPNYKSPINDKDIMNWIR 89
Query 63 EAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYVPQRVVEHLPERV 122
+ H T TTSVCTG L+L AAGLLNGL AT+HW DL +S GA +RVV ++
Sbjct 90 QIHETTNWTTSVCTGSLILGAAGLLNGLNATSHWSCLDLLHSYGAISTNERVVRQ--GKI 147
Query 123 ITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAK 170
IT+AGVSSGIDM L+LV + ++ QL++EYDP PP D GS K
Sbjct 148 ITSAGVSSGIDMALQLVAWESGEDISKYVQLILEYDPMPPFDWGSPEK 195
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 180588168880
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40