BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0053
Length=96
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607195|ref|NP_214567.1| 30S ribosomal protein S6 [Mycobacte... 195 2e-48
gi|41406165|ref|NP_959001.1| 30S ribosomal protein S6 [Mycobacte... 189 2e-46
gi|240168783|ref|ZP_04747442.1| 30S ribosomal protein S6 [Mycoba... 188 2e-46
gi|108802329|ref|YP_642526.1| 30S ribosomal protein S6 [Mycobact... 187 4e-46
gi|296167066|ref|ZP_06849478.1| 30S ribosomal protein S6 [Mycoba... 187 6e-46
gi|254818593|ref|ZP_05223594.1| 30S ribosomal protein S6 [Mycoba... 186 8e-46
gi|120406964|ref|YP_956793.1| 30S ribosomal protein S6 [Mycobact... 183 6e-45
gi|118615983|ref|YP_904315.1| 30S ribosomal protein S6 [Mycobact... 183 7e-45
gi|15828450|ref|NP_302713.1| 30S ribosomal protein S6 [Mycobacte... 183 9e-45
gi|145221468|ref|YP_001132146.1| 30S ribosomal protein S6 [Mycob... 183 9e-45
gi|118470162|ref|YP_891097.1| 30S ribosomal protein S6 [Mycobact... 170 7e-41
gi|169631972|ref|YP_001705621.1| 30S ribosomal protein S6 [Mycob... 166 1e-39
gi|111020421|ref|YP_703393.1| 30S ribosomal protein S6 [Rhodococ... 164 5e-39
gi|226309318|ref|YP_002769278.1| 30S ribosomal protein S6 [Rhodo... 160 5e-38
gi|312141934|ref|YP_004009270.1| 30S ribosomal protein s6 rpsf [... 159 9e-38
gi|343928599|ref|ZP_08768044.1| 30S ribosomal protein S6 [Gordon... 159 2e-37
gi|262204544|ref|YP_003275752.1| 30S ribosomal protein S6 [Gordo... 159 2e-37
gi|296141834|ref|YP_003649077.1| 30S ribosomal protein S6 [Tsuka... 159 2e-37
gi|326383851|ref|ZP_08205535.1| 30S ribosomal protein S6 [Gordon... 155 1e-36
gi|331700357|ref|YP_004336596.1| 30S ribosomal protein S6 [Pseud... 155 2e-36
gi|291007702|ref|ZP_06565675.1| 30S ribosomal protein S6 [Saccha... 154 6e-36
gi|134103771|ref|YP_001109432.1| 30S ribosomal protein S6 [Sacch... 153 6e-36
gi|333922182|ref|YP_004495763.1| 30S ribosomal protein S6 [Amyco... 152 1e-35
gi|54027546|ref|YP_121788.1| 30S ribosomal protein S6 [Nocardia ... 152 2e-35
gi|119718881|ref|YP_925846.1| 30S ribosomal protein S6P [Nocardi... 150 6e-35
gi|72163494|ref|YP_291151.1| 30S ribosomal protein S6 [Thermobif... 149 1e-34
gi|297563759|ref|YP_003682733.1| 30S ribosomal protein S6 [Nocar... 149 1e-34
gi|319950615|ref|ZP_08024522.1| 30S ribosomal protein S6 [Dietzi... 147 4e-34
gi|238061879|ref|ZP_04606588.1| 30S ribosomal protein S6 [Microm... 147 6e-34
gi|271970522|ref|YP_003344718.1| 30S ribosomal protein S6 [Strep... 147 7e-34
gi|284034857|ref|YP_003384788.1| 30S ribosomal protein S6 [Kribb... 146 1e-33
gi|296271510|ref|YP_003654142.1| 30S ribosomal protein S6 [Therm... 145 1e-33
gi|330470802|ref|YP_004408545.1| ribosomal protein s6 [Verrucosi... 145 3e-33
gi|302870699|ref|YP_003839336.1| 30S ribosomal protein S6 [Micro... 144 4e-33
gi|311897279|dbj|BAJ29687.1| putative ribosomal protein S6 [Kita... 144 6e-33
gi|311742124|ref|ZP_07715934.1| 30S ribosomal protein S6 [Aeromi... 143 1e-32
gi|145597065|ref|YP_001161362.1| 30S ribosomal protein S6 [Salin... 142 1e-32
gi|296392715|ref|YP_003657599.1| 30S ribosomal protein S6 [Segni... 142 1e-32
gi|317507599|ref|ZP_07965313.1| ribosomal protein S6 [Segnilipar... 142 2e-32
gi|256381017|ref|YP_003104677.1| 30S ribosomal protein S6 [Actin... 141 3e-32
gi|159040549|ref|YP_001539802.1| 30S ribosomal protein S6 [Salin... 141 4e-32
gi|294630310|ref|ZP_06708870.1| 30S ribosomal protein S6 [Strept... 140 5e-32
gi|257057876|ref|YP_003135708.1| 30S ribosomal protein S6P [Sacc... 140 5e-32
gi|309811413|ref|ZP_07705200.1| ribosomal protein S6 [Dermacoccu... 140 7e-32
gi|325965249|ref|YP_004243155.1| 30S ribosomal protein S6P [Arth... 140 8e-32
gi|294813713|ref|ZP_06772356.1| 30S ribosomal protein S6 [Strept... 139 1e-31
gi|254391456|ref|ZP_05006658.1| 30S ribosomal protein S6 [Strept... 139 1e-31
gi|21222313|ref|NP_628092.1| 30S ribosomal protein S6 [Streptomy... 139 1e-31
gi|117929340|ref|YP_873891.1| 30S ribosomal protein S6P [Acidoth... 139 1e-31
gi|258655466|ref|YP_003204622.1| 30S ribosomal protein S6 [Nakam... 139 1e-31
>gi|15607195|ref|NP_214567.1| 30S ribosomal protein S6 [Mycobacterium tuberculosis H37Rv]
gi|15839430|ref|NP_334467.1| 30S ribosomal protein S6 [Mycobacterium tuberculosis CDC1551]
gi|31791230|ref|NP_853723.1| 30S ribosomal protein S6 [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=96
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH
Sbjct 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
>gi|41406165|ref|NP_959001.1| 30S ribosomal protein S6 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465214|ref|YP_879374.1| 30S ribosomal protein S6 [Mycobacterium avium 104]
gi|254773120|ref|ZP_05214636.1| 30S ribosomal protein S6 [Mycobacterium avium subsp. avium ATCC
25291]
gi|61215645|sp|Q744V6.1|RS6_MYCPA RecName: Full=30S ribosomal protein S6
gi|41394513|gb|AAS02384.1| RpsF [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118166501|gb|ABK67398.1| ribosomal protein S6 [Mycobacterium avium 104]
gi|336459417|gb|EGO38359.1| ribosomal protein S6 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=96
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/96 (96%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGG VEKVDIWG+RRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGSVEKVDIWGRRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VVID+KA PATVSELDRQLSLNESVLRTKVMRTDKH
Sbjct 61 VVIDLKAEPATVSELDRQLSLNESVLRTKVMRTDKH 96
>gi|240168783|ref|ZP_04747442.1| 30S ribosomal protein S6 [Mycobacterium kansasii ATCC 12478]
Length=96
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/96 (94%), Positives = 95/96 (99%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIM+ILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWG+RRLAYEIAKH+EGIY
Sbjct 1 MRPYEIMIILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGRRRLAYEIAKHSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VV+D+KAAPATVSELDRQLSLNESVLRTKVMR DKH
Sbjct 61 VVVDLKAAPATVSELDRQLSLNESVLRTKVMRADKH 96
>gi|108802329|ref|YP_642526.1| 30S ribosomal protein S6 [Mycobacterium sp. MCS]
gi|119871482|ref|YP_941434.1| 30S ribosomal protein S6 [Mycobacterium sp. KMS]
gi|126438309|ref|YP_001074000.1| 30S ribosomal protein S6 [Mycobacterium sp. JLS]
gi|108772748|gb|ABG11470.1| SSU ribosomal protein S6P [Mycobacterium sp. MCS]
gi|119697571|gb|ABL94644.1| SSU ribosomal protein S6P [Mycobacterium sp. KMS]
gi|126238109|gb|ABO01510.1| SSU ribosomal protein S6P [Mycobacterium sp. JLS]
Length=96
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/96 (94%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNV+RKDGG V+KVDIWG+RRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGSVDKVDIWGRRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VIDVKAAPATV+ELDRQLSLNESVLRTKVMRTDKH
Sbjct 61 AVIDVKAAPATVTELDRQLSLNESVLRTKVMRTDKH 96
>gi|296167066|ref|ZP_06849478.1| 30S ribosomal protein S6 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897623|gb|EFG77217.1| 30S ribosomal protein S6 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=108
Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/96 (94%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGG V+KVDIWG+RRLAYEIAKHAEGIY
Sbjct 13 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGSVDKVDIWGRRRLAYEIAKHAEGIY 72
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VV+D+KA PATVSELDRQLSLNESVLRTKVMRTDKH
Sbjct 73 VVVDLKAEPATVSELDRQLSLNESVLRTKVMRTDKH 108
>gi|254818593|ref|ZP_05223594.1| 30S ribosomal protein S6 [Mycobacterium intracellulare ATCC 13950]
gi|342860217|ref|ZP_08716869.1| 30S ribosomal protein S6 [Mycobacterium colombiense CECT 3035]
gi|342132595|gb|EGT85824.1| 30S ribosomal protein S6 [Mycobacterium colombiense CECT 3035]
Length=96
Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/96 (94%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGG V+KVDIWG+RRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGSVDKVDIWGRRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VV+D+KA PATVSELDRQLSLNESVLRTKVMRTDKH
Sbjct 61 VVVDLKAEPATVSELDRQLSLNESVLRTKVMRTDKH 96
>gi|120406964|ref|YP_956793.1| 30S ribosomal protein S6 [Mycobacterium vanbaalenii PYR-1]
gi|119959782|gb|ABM16787.1| SSU ribosomal protein S6P [Mycobacterium vanbaalenii PYR-1]
Length=96
Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/96 (91%), Positives = 93/96 (97%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNV+RKDGG V+KVDIWG+RRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
++DVKA PATVSELDRQL+LNESVLRTKVMRTDKH
Sbjct 61 AIVDVKAEPATVSELDRQLNLNESVLRTKVMRTDKH 96
>gi|118615983|ref|YP_904315.1| 30S ribosomal protein S6 [Mycobacterium ulcerans Agy99]
gi|183980107|ref|YP_001848398.1| 30S ribosomal protein S6 RpsF [Mycobacterium marinum M]
gi|118568093|gb|ABL02844.1| 30S ribosomal protein S6 RpsF [Mycobacterium ulcerans Agy99]
gi|183173433|gb|ACC38543.1| 30S ribosomal protein S6 RpsF [Mycobacterium marinum M]
Length=96
Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/96 (93%), Positives = 92/96 (96%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNV+RKDGG V+KVDIWG+RRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VIDVKAAPATVSELDRQLSLNESVLRTKVMR DK
Sbjct 61 AVIDVKAAPATVSELDRQLSLNESVLRTKVMRADKR 96
>gi|15828450|ref|NP_302713.1| 30S ribosomal protein S6 [Mycobacterium leprae TN]
gi|221230927|ref|YP_002504343.1| 30S ribosomal protein S6 [Mycobacterium leprae Br4923]
gi|1173272|sp|P46389.1|RS6_MYCLE RecName: Full=30S ribosomal protein S6
gi|886305|gb|AAB53121.1| 30S ribosomal protein S6 [Mycobacterium leprae]
gi|2959412|emb|CAA17954.1| 30s ribosomal protein s6 [Mycobacterium leprae]
gi|13093880|emb|CAC32217.1| 30S ribosomal protein S6 [Mycobacterium leprae]
gi|219934034|emb|CAR72785.1| 30S ribosomal protein S6 [Mycobacterium leprae Br4923]
Length=96
Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/96 (92%), Positives = 93/96 (97%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDE TV PSLETFLNVVRKDGG ++KVDIWG+RRLAYEI+KHAEGIY
Sbjct 1 MRPYEIMVILDPTLDECTVGPSLETFLNVVRKDGGAIDKVDIWGRRRLAYEISKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VVID+KAAPATVSELDRQLSLNESVLRTKVMRTDKH
Sbjct 61 VVIDLKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
>gi|145221468|ref|YP_001132146.1| 30S ribosomal protein S6 [Mycobacterium gilvum PYR-GCK]
gi|315446780|ref|YP_004079659.1| 30S ribosomal protein S6P [Mycobacterium sp. Spyr1]
gi|145213954|gb|ABP43358.1| SSU ribosomal protein S6P [Mycobacterium gilvum PYR-GCK]
gi|315265083|gb|ADU01825.1| SSU ribosomal protein S6P [Mycobacterium sp. Spyr1]
Length=96
Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/96 (91%), Positives = 93/96 (97%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYEIMVILDPTLDERTVAPSLETFLNV+RKDGG V+KVDIWG+RRLAYEIAKHAEGIY
Sbjct 1 MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGSVDKVDIWGRRRLAYEIAKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
+IDVKA PATVSELDRQL+LNESVLRTKVMRT+KH
Sbjct 61 AIIDVKAEPATVSELDRQLNLNESVLRTKVMRTEKH 96
>gi|118470162|ref|YP_891097.1| 30S ribosomal protein S6 [Mycobacterium smegmatis str. MC2 155]
gi|302595892|sp|A0R7F9.1|RS6_MYCS2 RecName: Full=30S ribosomal protein S6
gi|118171449|gb|ABK72345.1| ribosomal protein S6 [Mycobacterium smegmatis str. MC2 155]
Length=90
Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/90 (92%), Positives = 87/90 (97%), Gaps = 0/90 (0%)
Query 7 MVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVK 66
MVILDPTLDERTVAPSLETFLNV+RKDGG V+KVDIWG+RRLAYEIAKHAEGIY VIDVK
Sbjct 1 MVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVK 60
Query 67 AAPATVSELDRQLSLNESVLRTKVMRTDKH 96
A PATVSELDRQL+LNESVLRTKV+RTDKH
Sbjct 61 AEPATVSELDRQLNLNESVLRTKVLRTDKH 90
>gi|169631972|ref|YP_001705621.1| 30S ribosomal protein S6 [Mycobacterium abscessus ATCC 19977]
gi|226695103|sp|B1MMI2.1|RS6_MYCA9 RecName: Full=30S ribosomal protein S6
gi|169243939|emb|CAM64967.1| 30S ribosomal protein S6 [Mycobacterium abscessus]
Length=96
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/93 (88%), Positives = 85/93 (92%), Gaps = 0/93 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YEIMVILDPTLDERTVAPSL+TFLNVVR DGG V KV++WGKRRLAYEIAKH EGIY
Sbjct 1 MRQYEIMVILDPTLDERTVAPSLDTFLNVVRGDGGTVSKVEVWGKRRLAYEIAKHTEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRT 93
VIDV AAPATVSELDRQL LNESVLRTKV+RT
Sbjct 61 AVIDVVAAPATVSELDRQLGLNESVLRTKVLRT 93
>gi|111020421|ref|YP_703393.1| 30S ribosomal protein S6 [Rhodococcus jostii RHA1]
gi|226362639|ref|YP_002780417.1| 30S ribosomal protein S6 [Rhodococcus opacus B4]
gi|123340395|sp|Q0SB51.1|RS6_RHOSR RecName: Full=30S ribosomal protein S6
gi|254765449|sp|C1B719.1|RS6_RHOOB RecName: Full=30S ribosomal protein S6
gi|110819951|gb|ABG95235.1| 30S ribosomal protein S6 [Rhodococcus jostii RHA1]
gi|226241124|dbj|BAH51472.1| 30S ribosomal protein S6 [Rhodococcus opacus B4]
Length=95
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 88/95 (93%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+TFLNVVR+DGGK++KVD+WGKRRLAYEI KH+EGIY
Sbjct 1 MRHYELMVILDPSLDERTVAPSLDTFLNVVRQDGGKIDKVDVWGKRRLAYEILKHSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
VID+ A PATV+ELDRQL LNESVLRTKV+R +K
Sbjct 61 AVIDISATPATVAELDRQLGLNESVLRTKVLRHNK 95
>gi|226309318|ref|YP_002769278.1| 30S ribosomal protein S6 [Rhodococcus erythropolis PR4]
gi|229489891|ref|ZP_04383746.1| ribosomal protein S6 [Rhodococcus erythropolis SK121]
gi|259495342|sp|C0ZV45.1|RS6_RHOE4 RecName: Full=30S ribosomal protein S6
gi|226188435|dbj|BAH36539.1| 30S ribosomal protein S6 [Rhodococcus erythropolis PR4]
gi|229323187|gb|EEN88953.1| ribosomal protein S6 [Rhodococcus erythropolis SK121]
Length=95
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/95 (79%), Positives = 86/95 (91%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+TFLNVVR+ GG ++KVD+WGKRRLAYEI KHAEGIY
Sbjct 1 MRHYELMVILDPSLDERTVAPSLDTFLNVVRQHGGTIDKVDVWGKRRLAYEILKHAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
VID+ A PATV+ELDRQL LNESVLRTKV+R +K
Sbjct 61 AVIDINATPATVAELDRQLGLNESVLRTKVLRHNK 95
>gi|312141934|ref|YP_004009270.1| 30S ribosomal protein s6 rpsf [Rhodococcus equi 103S]
gi|325672812|ref|ZP_08152506.1| 30S ribosomal protein S6 [Rhodococcus equi ATCC 33707]
gi|311891273|emb|CBH50594.1| 30S ribosomal protein S6 RpsF [Rhodococcus equi 103S]
gi|325556065|gb|EGD25733.1| 30S ribosomal protein S6 [Rhodococcus equi ATCC 33707]
Length=95
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 86/95 (91%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+TFLNVVRKDGG V+KVD+WGKRRLA+EIAK+AEGIY
Sbjct 1 MRHYELMVILDPSLDERTVAPSLDTFLNVVRKDGGNVDKVDVWGKRRLAFEIAKNAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
V+D+ A PATV ELDRQL LNESVLRTKV+R K
Sbjct 61 AVVDITAEPATVKELDRQLGLNESVLRTKVLRHGK 95
>gi|343928599|ref|ZP_08768044.1| 30S ribosomal protein S6 [Gordonia alkanivorans NBRC 16433]
gi|343761348|dbj|GAA14970.1| 30S ribosomal protein S6 [Gordonia alkanivorans NBRC 16433]
Length=93
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/92 (84%), Positives = 83/92 (91%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP LDERTVAPSL+TFLNVVRKDGG V+ VDIWGKRRLAYEI KH EGIY
Sbjct 1 MRHYELMVILDPNLDERTVAPSLDTFLNVVRKDGGSVDGVDIWGKRRLAYEILKHNEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VID+KA PATV+ELDRQL LNESVLRTKV+R
Sbjct 61 AVIDLKAEPATVTELDRQLKLNESVLRTKVLR 92
>gi|262204544|ref|YP_003275752.1| 30S ribosomal protein S6 [Gordonia bronchialis DSM 43247]
gi|262087891|gb|ACY23859.1| ribosomal protein S6 [Gordonia bronchialis DSM 43247]
Length=93
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/92 (83%), Positives = 83/92 (91%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP LDERTVAPSL+TFLNVVR DGGKV+ VDIWGKRRLAYEIAKH+EGIY
Sbjct 1 MRHYELMVILDPNLDERTVAPSLDTFLNVVRNDGGKVDGVDIWGKRRLAYEIAKHSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VID+ A P TV+ELDRQL LNESVLRTKV+R
Sbjct 61 AVIDLNAEPKTVTELDRQLKLNESVLRTKVLR 92
>gi|296141834|ref|YP_003649077.1| 30S ribosomal protein S6 [Tsukamurella paurometabola DSM 20162]
gi|296029968|gb|ADG80738.1| ribosomal protein S6 [Tsukamurella paurometabola DSM 20162]
Length=94
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/92 (82%), Positives = 83/92 (91%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSLETFLNVVRKDGG V +DIWGKRRLAYEI K++EGIY
Sbjct 1 MRKYELMVILDPSLDERTVAPSLETFLNVVRKDGGTVSNIDIWGKRRLAYEITKNSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VID+ A PATV+ELDRQL LNESVLRTKV+R
Sbjct 61 AVIDLTAEPATVNELDRQLKLNESVLRTKVLR 92
>gi|326383851|ref|ZP_08205535.1| 30S ribosomal protein S6 [Gordonia neofelifaecis NRRL B-59395]
gi|326197310|gb|EGD54500.1| 30S ribosomal protein S6 [Gordonia neofelifaecis NRRL B-59395]
Length=93
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/92 (81%), Positives = 83/92 (91%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+TFLNVVR +GGKV+ V+IWGKRRLAYEIAKH EGIY
Sbjct 1 MRHYELMVILDPSLDERTVAPSLDTFLNVVRNEGGKVDDVEIWGKRRLAYEIAKHNEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
V+ + A PATVSELDRQL LNESVLRTKV+R
Sbjct 61 AVVQLNATPATVSELDRQLKLNESVLRTKVLR 92
>gi|331700357|ref|YP_004336596.1| 30S ribosomal protein S6 [Pseudonocardia dioxanivorans CB1190]
gi|326955046|gb|AEA28743.1| 30S ribosomal protein S6 [Pseudonocardia dioxanivorans CB1190]
Length=109
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/94 (78%), Positives = 84/94 (90%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTV PSLETFLNVVR DGG VEKV++WGKRRLAYEIAK+AE IY
Sbjct 4 MRHYEVMVILDPSLDERTVQPSLETFLNVVRTDGGSVEKVEVWGKRRLAYEIAKNAEAIY 63
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
+++V A PATV+ELDRQL LNESVLRTKV+R +
Sbjct 64 AILEVTAEPATVAELDRQLGLNESVLRTKVLRRE 97
>gi|291007702|ref|ZP_06565675.1| 30S ribosomal protein S6 [Saccharopolyspora erythraea NRRL 2338]
Length=121
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/92 (78%), Positives = 83/92 (91%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSLE FLNV+R DGG VEKVD+WG+RRLAYEI K AEGIY
Sbjct 4 MRHYELMVILDPSLDERTVAPSLENFLNVIRNDGGSVEKVDVWGRRRLAYEIDKQAEGIY 63
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VV+D+ + PA+V ELDRQL+LNE+VLRTKV+R
Sbjct 64 VVLDLNSEPASVKELDRQLNLNETVLRTKVLR 95
>gi|134103771|ref|YP_001109432.1| 30S ribosomal protein S6 [Saccharopolyspora erythraea NRRL 2338]
gi|166227379|sp|A4FR32.1|RS6_SACEN RecName: Full=30S ribosomal protein S6
gi|133916394|emb|CAM06507.1| 30S ribosomal protein S6 [Saccharopolyspora erythraea NRRL 2338]
Length=118
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/92 (78%), Positives = 83/92 (91%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSLE FLNV+R DGG VEKVD+WG+RRLAYEI K AEGIY
Sbjct 1 MRHYELMVILDPSLDERTVAPSLENFLNVIRNDGGSVEKVDVWGRRRLAYEIDKQAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VV+D+ + PA+V ELDRQL+LNE+VLRTKV+R
Sbjct 61 VVLDLNSEPASVKELDRQLNLNETVLRTKVLR 92
>gi|333922182|ref|YP_004495763.1| 30S ribosomal protein S6 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484403|gb|AEF42963.1| 30S ribosomal protein S6 [Amycolicicoccus subflavus DQS3-9A1]
Length=95
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/92 (78%), Positives = 81/92 (89%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP LDERT+APSL+TFLNV+R+ GG ++ VDIWGKRRLAYEI KH+EGIY
Sbjct 1 MRQYELMVILDPRLDERTIAPSLDTFLNVIRQGGGSIDTVDIWGKRRLAYEINKHSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VI+V A PATV ELDRQL LNESVLRTKV+R
Sbjct 61 AVINVSAEPATVKELDRQLGLNESVLRTKVLR 92
>gi|54027546|ref|YP_121788.1| 30S ribosomal protein S6 [Nocardia farcinica IFM 10152]
gi|61215419|sp|Q5YN17.1|RS6_NOCFA RecName: Full=30S ribosomal protein S6
gi|54019054|dbj|BAD60424.1| putative ribosomal protein S6 [Nocardia farcinica IFM 10152]
Length=95
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/95 (76%), Positives = 83/95 (88%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTV PSLE L VV+ +GGK++KVDIWG+RRLAYEI K AEGIY
Sbjct 1 MRHYEVMVILDPSLDERTVGPSLENMLGVVKTEGGKIDKVDIWGRRRLAYEIRKQAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
VID+ A+PATV+ELDRQL LNESVLRTKV+R DK
Sbjct 61 AVIDLTASPATVNELDRQLGLNESVLRTKVLRHDK 95
>gi|119718881|ref|YP_925846.1| 30S ribosomal protein S6P [Nocardioides sp. JS614]
gi|166227356|sp|A1SQS4.1|RS6_NOCSJ RecName: Full=30S ribosomal protein S6
gi|119539542|gb|ABL84159.1| SSU ribosomal protein S6P [Nocardioides sp. JS614]
Length=96
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/96 (71%), Positives = 82/96 (86%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+L+ERTV PSL+ +LNV+RKDGG VE VD+WG+RRLAYE+ K+AEGIY
Sbjct 1 MRAYEVMVILDPSLEERTVEPSLDKYLNVIRKDGGTVESVDVWGRRRLAYEVKKNAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VI + A PATV E DRQL+LNES++RTKVMR D H
Sbjct 61 AVIKLNAEPATVKEFDRQLTLNESIIRTKVMRPDAH 96
>gi|72163494|ref|YP_291151.1| 30S ribosomal protein S6 [Thermobifida fusca YX]
gi|91207797|sp|Q47K94.1|RS6_THEFY RecName: Full=30S ribosomal protein S6
gi|71917226|gb|AAZ57128.1| SSU ribosomal protein S6P [Thermobifida fusca YX]
Length=96
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/96 (73%), Positives = 84/96 (88%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+M+ILDPTLDERTVAPSLE FL+VVR +GG VEKVD+WGKRRLAY+I K++EGIY
Sbjct 1 MRRYEVMIILDPTLDERTVAPSLEQFLSVVRNEGGSVEKVDVWGKRRLAYDIGKNSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID+ A P+TV ELDRQL+L E+VLRTKV+R + H
Sbjct 61 AVIDLTAKPSTVHELDRQLNLTEAVLRTKVLRPEIH 96
>gi|297563759|ref|YP_003682733.1| 30S ribosomal protein S6 [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296848207|gb|ADH70227.1| ribosomal protein S6 [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=96
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 81/96 (85%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+M+ILDP LDERTVAPSLE FL VVR DGG VEKVDIWGKRRLAY+I K+AEGIY
Sbjct 1 MRRYELMIILDPNLDERTVAPSLENFLGVVRNDGGSVEKVDIWGKRRLAYDIDKNAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID+ A PATV ELDRQL + E+VLRTKV+R + H
Sbjct 61 AVIDLTAEPATVKELDRQLGIAEAVLRTKVLRPEVH 96
>gi|319950615|ref|ZP_08024522.1| 30S ribosomal protein S6 [Dietzia cinnamea P4]
gi|319435723|gb|EFV90936.1| 30S ribosomal protein S6 [Dietzia cinnamea P4]
Length=95
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/95 (72%), Positives = 81/95 (86%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+TFLNV+R++GG V+KVD+WGKRR AYEI K EGIY
Sbjct 1 MRQYEVMVILDPSLDERTVAPSLDTFLNVIRQEGGSVDKVDVWGKRRFAYEINKLNEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
V+ +K+ P V ELDRQL LNE+VLRTKV+R DK
Sbjct 61 AVVQLKSEPDAVKELDRQLGLNENVLRTKVLRADK 95
>gi|238061879|ref|ZP_04606588.1| 30S ribosomal protein S6 [Micromonospora sp. ATCC 39149]
gi|237883690|gb|EEP72518.1| 30S ribosomal protein S6 [Micromonospora sp. ATCC 39149]
Length=96
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/94 (74%), Positives = 82/94 (88%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YEIMVILDP+L+ERTVAPSL+T+LNV+R GG VEK D+WG+RRLAYEI K AEGIY
Sbjct 1 MRHYEIMVILDPSLEERTVAPSLDTYLNVIRTAGGSVEKTDVWGRRRLAYEINKKAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
V+D++A PA V+ELDRQL LNESVLRTKV+R +
Sbjct 61 AVVDLQATPAAVAELDRQLRLNESVLRTKVIRPE 94
>gi|271970522|ref|YP_003344718.1| 30S ribosomal protein S6 [Streptosporangium roseum DSM 43021]
gi|270513697|gb|ACZ91975.1| 30S ribosomal protein S6 [Streptosporangium roseum DSM 43021]
Length=96
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/96 (72%), Positives = 81/96 (85%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+ FL VVR DGG VEKVD+WG+RRL+Y+I K EGIY
Sbjct 1 MRRYEMMVILDPSLDERTVAPSLDQFLTVVRNDGGSVEKVDVWGRRRLSYDIDKKPEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID+ A PATV ELDRQ++LNE +LRTKV+R D H
Sbjct 61 AVIDLTAEPATVKELDRQMNLNEGILRTKVLRPDVH 96
>gi|284034857|ref|YP_003384788.1| 30S ribosomal protein S6 [Kribbella flavida DSM 17836]
gi|283814150|gb|ADB35989.1| ribosomal protein S6 [Kribbella flavida DSM 17836]
Length=96
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/96 (70%), Positives = 83/96 (87%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP L+ERTV PSL+ +LN+VRK+GG VEK+DIWG+R+LAY++ K AEGIY
Sbjct 1 MRRYEVMVILDPELEERTVEPSLDQYLNIVRKEGGTVEKLDIWGRRKLAYDVKKKAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID+ A PA V ELDRQL+LNES+LRTKV+R D+H
Sbjct 61 AVIDLTAEPAVVKELDRQLTLNESILRTKVIRPDQH 96
>gi|296271510|ref|YP_003654142.1| 30S ribosomal protein S6 [Thermobispora bispora DSM 43833]
gi|296094297|gb|ADG90249.1| ribosomal protein S6 [Thermobispora bispora DSM 43833]
Length=96
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/96 (71%), Positives = 82/96 (86%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTV PSL+ FL++VR DGG VEKVD+WG+R+LAY+IAK +EGIY
Sbjct 1 MRRYEMMVILDPSLDERTVEPSLDQFLSIVRNDGGTVEKVDVWGRRKLAYDIAKRSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID+ P TV ELDRQL+LNE+VLRTKV+R D H
Sbjct 61 AVIDLTCKPETVRELDRQLNLNENVLRTKVIRPDLH 96
>gi|330470802|ref|YP_004408545.1| ribosomal protein s6 [Verrucosispora maris AB-18-032]
gi|328813773|gb|AEB47945.1| ribosomal protein s6 [Verrucosispora maris AB-18-032]
Length=96
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/94 (73%), Positives = 81/94 (87%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YEIMVILDP+L+ERTVAPSL+T+LNV+R GG VEK D+WG+RRLAYEI K AEGIY
Sbjct 1 MRHYEIMVILDPSLEERTVAPSLDTYLNVIRTAGGSVEKTDVWGRRRLAYEINKKAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
V+D++A P V+ELDRQL LNESVLRTKV+R +
Sbjct 61 AVVDLQATPEAVAELDRQLRLNESVLRTKVIRPE 94
>gi|302870699|ref|YP_003839336.1| 30S ribosomal protein S6 [Micromonospora aurantiaca ATCC 27029]
gi|315506936|ref|YP_004085823.1| 30S ribosomal protein S6 [Micromonospora sp. L5]
gi|302573558|gb|ADL49760.1| ribosomal protein S6 [Micromonospora aurantiaca ATCC 27029]
gi|315413555|gb|ADU11672.1| ribosomal protein S6 [Micromonospora sp. L5]
Length=96
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/94 (73%), Positives = 80/94 (86%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+L+ERTVAPSL+T+LNV+R GG VEK D+WG+RRLAYEI K AEGIY
Sbjct 1 MRHYEVMVILDPSLEERTVAPSLDTYLNVIRTAGGSVEKTDVWGRRRLAYEINKKAEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
VID++A P V ELDRQL LNESVLRTKV+R +
Sbjct 61 AVIDLQATPEAVGELDRQLRLNESVLRTKVIRPE 94
>gi|311897279|dbj|BAJ29687.1| putative ribosomal protein S6 [Kitasatospora setae KM-6054]
Length=96
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/96 (69%), Positives = 80/96 (84%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+++ER V+P +E+FLNVVR GGK+EK+D WG+RRLAYEI K +EGIY
Sbjct 1 MRHYEVMVILDPSVEERAVSPLIESFLNVVRTGGGKIEKIDTWGRRRLAYEINKQSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID+KA P V ELDRQ SL+ESVLRTKV+R D H
Sbjct 61 SVIDLKATPEVVKELDRQFSLSESVLRTKVLRPDTH 96
>gi|311742124|ref|ZP_07715934.1| 30S ribosomal protein S6 [Aeromicrobium marinum DSM 15272]
gi|311314617|gb|EFQ84524.1| 30S ribosomal protein S6 [Aeromicrobium marinum DSM 15272]
Length=98
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/94 (71%), Positives = 78/94 (83%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
+R YE+MVILD +LDERTV PSL+T+LNV+R DGG V+KVD+WGKRR AYEI K EGIY
Sbjct 3 LRHYEVMVILDASLDERTVEPSLDTYLNVIRADGGSVDKVDVWGKRRFAYEINKQTEGIY 62
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
V+D++A PA V ELDRQL LNESV+RTKV R D
Sbjct 63 AVLDLQATPAAVKELDRQLGLNESVVRTKVQRPD 96
>gi|145597065|ref|YP_001161362.1| 30S ribosomal protein S6 [Salinispora tropica CNB-440]
gi|189045493|sp|A4XDG8.1|RS6_SALTO RecName: Full=30S ribosomal protein S6
gi|145306402|gb|ABP56984.1| SSU ribosomal protein S6P [Salinispora tropica CNB-440]
Length=96
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/92 (74%), Positives = 79/92 (86%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YEIMVILD +L+ERTVAPSL+T+LNV+R GG VEK D+WG+RRLAYEI K EGIY
Sbjct 1 MRHYEIMVILDSSLEERTVAPSLDTYLNVIRTAGGSVEKTDVWGRRRLAYEIDKKTEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VID++A PA V+ELDRQL LNESVLRTKV+R
Sbjct 61 AVIDLQATPAAVAELDRQLRLNESVLRTKVIR 92
>gi|296392715|ref|YP_003657599.1| 30S ribosomal protein S6 [Segniliparus rotundus DSM 44985]
gi|296179862|gb|ADG96768.1| ribosomal protein S6 [Segniliparus rotundus DSM 44985]
Length=95
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/95 (69%), Positives = 81/95 (86%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+M+ILDP +DERTVAP+++ L VVR++GG VEKVD+WG+RRLAYEIAK EGIY
Sbjct 1 MRQYELMLILDPNIDERTVAPAVDKLLGVVREEGGSVEKVDVWGRRRLAYEIAKRGEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
V+D+KA +TVSELDRQL +NE+VLR KV+R DK
Sbjct 61 AVVDLKAQSSTVSELDRQLRINETVLRAKVLRKDK 95
>gi|317507599|ref|ZP_07965313.1| ribosomal protein S6 [Segniliparus rugosus ATCC BAA-974]
gi|316254119|gb|EFV13475.1| ribosomal protein S6 [Segniliparus rugosus ATCC BAA-974]
Length=95
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/95 (69%), Positives = 81/95 (86%), Gaps = 0/95 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+M+ILDP +DERTVAP+++ L VVR++GG VEKVD+WG+RRLAYEIAK EGIY
Sbjct 1 MRQYELMLILDPNIDERTVAPAVDKLLGVVREEGGAVEKVDVWGRRRLAYEIAKKGEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDK 95
V+D+KA +TVSELDRQL +NE+VLR KV+R DK
Sbjct 61 AVVDLKAQSSTVSELDRQLRINETVLRAKVLRKDK 95
>gi|256381017|ref|YP_003104677.1| 30S ribosomal protein S6 [Actinosynnema mirum DSM 43827]
gi|255925320|gb|ACU40831.1| ribosomal protein S6 [Actinosynnema mirum DSM 43827]
Length=118
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/92 (72%), Positives = 78/92 (85%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP+LDERTVAPSL+TFLNV+R GG VEKVD+WGKRRL++EI K AEGIY
Sbjct 4 MRHYEVMVILDPSLDERTVAPSLDTFLNVIRTAGGNVEKVDVWGKRRLSFEINKSAEGIY 63
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
V+D+ + P V ELDRQL L E+VLRTKV+R
Sbjct 64 AVLDLLSTPEAVKELDRQLGLQETVLRTKVLR 95
>gi|159040549|ref|YP_001539802.1| 30S ribosomal protein S6 [Salinispora arenicola CNS-205]
gi|189045490|sp|A8LXG3.1|RS6_SALAI RecName: Full=30S ribosomal protein S6
gi|157919384|gb|ABW00812.1| ribosomal protein S6 [Salinispora arenicola CNS-205]
Length=96
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/92 (73%), Positives = 79/92 (86%), Gaps = 0/92 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YEIMVILD +L+ERTVAPSL+T+LNV+R GG VEK D+WG+RRLAYEI K EGIY
Sbjct 1 MRHYEIMVILDSSLEERTVAPSLDTYLNVIRTAGGSVEKTDVWGRRRLAYEIDKKTEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
VID++A PA V+EL+RQL LNESVLRTKV+R
Sbjct 61 AVIDLQATPAAVAELERQLRLNESVLRTKVIR 92
>gi|294630310|ref|ZP_06708870.1| 30S ribosomal protein S6 [Streptomyces sp. e14]
gi|292833643|gb|EFF91992.1| 30S ribosomal protein S6 [Streptomyces sp. e14]
Length=96
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/96 (70%), Positives = 80/96 (84%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP L+ER+V+P +E FL+VVR GGKVEKVD WG+RRLAYEI K EGIY
Sbjct 1 MRHYEVMVILDPDLEERSVSPLIENFLSVVRDGGGKVEKVDTWGRRRLAYEIKKKPEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID++A PA V ELDRQ++LNESVLRTKV+R + H
Sbjct 61 SVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPETH 96
>gi|257057876|ref|YP_003135708.1| 30S ribosomal protein S6P [Saccharomonospora viridis DSM 43017]
gi|256587748|gb|ACU98881.1| SSU ribosomal protein S6P [Saccharomonospora viridis DSM 43017]
Length=111
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/91 (72%), Positives = 78/91 (86%), Gaps = 0/91 (0%)
Query 2 RPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYV 61
R YEIMVILDP+LDERTVAP+LE FL V+R GG VEKVD+WG+RRLAY+I KH+EGIY
Sbjct 3 RHYEIMVILDPSLDERTVAPTLENFLQVIRSSGGTVEKVDVWGRRRLAYDIGKHSEGIYA 62
Query 62 VIDVKAAPATVSELDRQLSLNESVLRTKVMR 92
V+++ A P VSELDRQLSL E+V+RTKV+R
Sbjct 63 VLELYAEPEAVSELDRQLSLQETVMRTKVIR 93
>gi|309811413|ref|ZP_07705200.1| ribosomal protein S6 [Dermacoccus sp. Ellin185]
gi|308434720|gb|EFP58565.1| ribosomal protein S6 [Dermacoccus sp. Ellin185]
Length=99
Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/94 (69%), Positives = 78/94 (83%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+M+ILD LDERTV PSLE FL+VV KDGG V+ VD+WG+RR+AY+I K +EGIY
Sbjct 5 MRHYEMMIILDGELDERTVQPSLEKFLSVVTKDGGTVDNVDVWGRRRMAYDIKKKSEGIY 64
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
VV+D A PAT +ELDRQL LNES+LRTK++R D
Sbjct 65 VVVDFNATPATAAELDRQLGLNESILRTKILRKD 98
>gi|325965249|ref|YP_004243155.1| 30S ribosomal protein S6P [Arthrobacter phenanthrenivorans Sphe3]
gi|323471336|gb|ADX75021.1| SSU ribosomal protein S6P [Arthrobacter phenanthrenivorans Sphe3]
Length=101
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/96 (64%), Positives = 78/96 (82%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MRPYE+MVI+DP ++ERTV PSL+ FLNV+ DGG +EKVDIWG+RRLAYEI K +EGIY
Sbjct 1 MRPYELMVIIDPEVEERTVEPSLQKFLNVITNDGGTIEKVDIWGRRRLAYEIKKKSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
V++ A P T ELDRQLSLNE+++RTK+ R ++
Sbjct 61 AVVNFTAKPETAKELDRQLSLNETIMRTKITRPEEQ 96
>gi|294813713|ref|ZP_06772356.1| 30S ribosomal protein S6 [Streptomyces clavuligerus ATCC 27064]
gi|294326312|gb|EFG07955.1| 30S ribosomal protein S6 [Streptomyces clavuligerus ATCC 27064]
Length=107
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/96 (70%), Positives = 79/96 (83%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP L+ER VAP +E FL+VVR+ GKVEKVD WG+RRLAYEI K EGIY
Sbjct 12 MRHYEVMVILDPDLEERAVAPLIENFLSVVREGNGKVEKVDTWGRRRLAYEIKKKPEGIY 71
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID++A PA V ELDRQ++LNESVLRTKV+R + H
Sbjct 72 SVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPETH 107
>gi|254391456|ref|ZP_05006658.1| 30S ribosomal protein S6 [Streptomyces clavuligerus ATCC 27064]
gi|326442135|ref|ZP_08216869.1| 30S ribosomal protein S6 [Streptomyces clavuligerus ATCC 27064]
gi|197705145|gb|EDY50957.1| 30S ribosomal protein S6 [Streptomyces clavuligerus ATCC 27064]
Length=96
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/96 (70%), Positives = 79/96 (83%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP L+ER VAP +E FL+VVR+ GKVEKVD WG+RRLAYEI K EGIY
Sbjct 1 MRHYEVMVILDPDLEERAVAPLIENFLSVVREGNGKVEKVDTWGRRRLAYEIKKKPEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID++A PA V ELDRQ++LNESVLRTKV+R + H
Sbjct 61 SVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPETH 96
>gi|21222313|ref|NP_628092.1| 30S ribosomal protein S6 [Streptomyces coelicolor A3(2)]
gi|289770478|ref|ZP_06529856.1| 30S ribosomal protein S6 [Streptomyces lividans TK24]
gi|7388220|sp|Q9X8U2.1|RS6_STRCO RecName: Full=30S ribosomal protein S6
gi|4808402|emb|CAB42734.1| putative 30S ribosomal protein S6 [Streptomyces coelicolor A3(2)]
gi|289700677|gb|EFD68106.1| 30S ribosomal protein S6 [Streptomyces lividans TK24]
Length=96
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/96 (69%), Positives = 80/96 (84%), Gaps = 0/96 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MVILDP L+ER+V+P +E FL+VVR GGKVEKVD WG+RRL+YEI K EGIY
Sbjct 1 MRHYEVMVILDPDLEERSVSPLIENFLSVVRDGGGKVEKVDTWGRRRLSYEIKKKPEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH 96
VID++A PA V ELDRQ++LNESVLRTKV+R + H
Sbjct 61 SVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPEMH 96
>gi|117929340|ref|YP_873891.1| 30S ribosomal protein S6P [Acidothermus cellulolyticus 11B]
gi|166226791|sp|A0LWU5.1|RS6_ACIC1 RecName: Full=30S ribosomal protein S6
gi|117649803|gb|ABK53905.1| SSU ribosomal protein S6P [Acidothermus cellulolyticus 11B]
Length=96
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/94 (69%), Positives = 81/94 (87%), Gaps = 0/94 (0%)
Query 1 MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIY 60
MR YE+MV+LDP ++ER+V PSL+ FLNVVR+DGG V+K+D+WG+RRLAYEI K +EGIY
Sbjct 1 MRHYELMVLLDPDVEERSVEPSLDQFLNVVRQDGGTVQKIDVWGRRRLAYEIRKKSEGIY 60
Query 61 VVIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
VID+ A P TV ELDRQL+LNE+VLRTK++R D
Sbjct 61 AVIDLIANPQTVKELDRQLNLNENVLRTKLVRPD 94
>gi|258655466|ref|YP_003204622.1| 30S ribosomal protein S6 [Nakamurella multipartita DSM 44233]
gi|258558691|gb|ACV81633.1| ribosomal protein S6 [Nakamurella multipartita DSM 44233]
Length=102
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/93 (70%), Positives = 78/93 (84%), Gaps = 0/93 (0%)
Query 2 RPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYV 61
R YE+++ILDP LDERTVAPS++TFLNV+R+ GG VE VDIWGKRRLA+EI K+ EGIY
Sbjct 8 RHYELLLILDPNLDERTVAPSIDTFLNVIRQGGGSVENVDIWGKRRLAFEIKKNPEGIYA 67
Query 62 VIDVKAAPATVSELDRQLSLNESVLRTKVMRTD 94
VI V A V+ELDRQL+LNESVLRTK++R D
Sbjct 68 VIKVTCPSAVVTELDRQLNLNESVLRTKIIRPD 100
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131127635258
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40