BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0054 Length=164 Score E Sequences producing significant alignments: (Bits) Value gi|15607196|ref|NP_214568.1| single-stranded DNA-binding protein... 326 6e-88 gi|306805836|ref|ZP_07442504.1| single-strand binding protein ss... 325 1e-87 gi|340625087|ref|YP_004743539.1| putative single-strand binding ... 324 2e-87 gi|289445580|ref|ZP_06435324.1| single-strand binding protein ss... 324 3e-87 gi|41406166|ref|NP_959002.1| single-strand DNA-binding protein [... 288 1e-76 gi|342860216|ref|ZP_08716868.1| single-stranded DNA-binding prot... 285 2e-75 gi|254818592|ref|ZP_05223593.1| single-stranded DNA-binding prot... 283 7e-75 gi|254773121|ref|ZP_05214637.1| single-stranded DNA-binding prot... 282 1e-74 gi|240168785|ref|ZP_04747444.1| single-stranded DNA-binding prot... 279 8e-74 gi|145221469|ref|YP_001132147.1| single-stranded DNA-binding pro... 274 3e-72 gi|15828449|ref|NP_302712.1| single-stranded DNA-binding protein... 273 7e-72 gi|315446779|ref|YP_004079658.1| single-strand binding protein [... 271 2e-71 gi|296167065|ref|ZP_06849477.1| single-strand binding protein [M... 271 3e-71 gi|118469435|ref|YP_891096.1| single-stranded DNA-binding protei... 269 9e-71 gi|118615984|ref|YP_904316.1| single-stranded DNA-binding protei... 264 3e-69 gi|183980108|ref|YP_001848399.1| single-strand binding protein S... 263 7e-69 gi|333992947|ref|YP_004525561.1| single-strand binding protein S... 263 8e-69 gi|312141933|ref|YP_004009269.1| single-strand binding protein [... 262 1e-68 gi|169631971|ref|YP_001705620.1| single-stranded DNA-binding pro... 261 2e-68 gi|120406963|ref|YP_956792.1| single-stranded DNA-binding protei... 260 4e-68 gi|108802328|ref|YP_642525.1| single-stranded DNA-binding protei... 260 6e-68 gi|54027547|ref|YP_121789.1| single-stranded DNA-binding protein... 259 7e-68 gi|257057877|ref|YP_003135709.1| single-strand binding protein [... 251 2e-65 gi|226309317|ref|YP_002769277.1| single-stranded DNA-binding pro... 247 4e-64 gi|301321557|gb|ADK68947.1| Single-stranded DNA-binding protein ... 246 6e-64 gi|258655465|ref|YP_003204621.1| single-strand binding protein [... 246 6e-64 gi|262204543|ref|YP_003275751.1| single-strand-binding protein [... 246 1e-63 gi|325674331|ref|ZP_08154020.1| single-strand binding protein [R... 244 4e-63 gi|226362638|ref|YP_002780416.1| single-stranded DNA-binding pro... 241 2e-62 gi|111020420|ref|YP_703392.1| single-stranded DNA-binding protei... 241 2e-62 gi|296141833|ref|YP_003649076.1| single-strand binding protein [... 239 7e-62 gi|331700356|ref|YP_004336595.1| single-strand binding protein [... 238 2e-61 gi|303324825|pdb|3A5U|A Chain A, Promiscuity And Specificity In ... 238 2e-61 gi|324998551|ref|ZP_08119663.1| single-strand DNA-binding protei... 238 2e-61 gi|296392716|ref|YP_003657600.1| single-strand binding protein [... 238 2e-61 gi|302531299|ref|ZP_07283641.1| single-strand binding protein [S... 236 9e-61 gi|886304|gb|AAB53120.1| putative [Mycobacterium leprae] 234 3e-60 gi|317507600|ref|ZP_07965314.1| single-strand binding protein [S... 233 6e-60 gi|343928598|ref|ZP_08768043.1| single-stranded DNA-binding prot... 231 3e-59 gi|134103770|ref|YP_001109431.1| single-strand DNA-binding prote... 231 3e-59 gi|256381018|ref|YP_003104678.1| single-strand binding protein [... 229 8e-59 gi|333922181|ref|YP_004495762.1| Single-stranded DNA-binding pro... 229 1e-58 gi|284993410|ref|YP_003411965.1| single-strand binding protein [... 226 6e-58 gi|300791096|ref|YP_003771387.1| single-strand DNA-binding prote... 226 7e-58 gi|302527522|ref|ZP_07279864.1| single-strand binding protein [S... 223 7e-57 gi|325965471|ref|YP_004243376.1| single stranded DNA-binding pro... 223 9e-57 gi|302870698|ref|YP_003839335.1| single-strand binding protein [... 221 2e-56 gi|330470801|ref|YP_004408544.1| single-strand binding protein [... 221 4e-56 gi|238061878|ref|ZP_04606587.1| single-strand binding protein [M... 220 6e-56 gi|334338418|ref|YP_004543570.1| single-strand binding protein [... 219 1e-55 >gi|15607196|ref|NP_214568.1| single-stranded DNA-binding protein [Mycobacterium tuberculosis H37Rv] gi|15839431|ref|NP_334468.1| single-stranded DNA-binding protein [Mycobacterium tuberculosis CDC1551] gi|31791231|ref|NP_853724.1| single-stranded DNA-binding protein [Mycobacterium bovis AF2122/97] 84 more sequence titles Length=164 Score = 326 bits (836), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 163/164 (99%), Positives = 164/164 (100%), Gaps = 0/164 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW Sbjct 1 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 >gi|306805836|ref|ZP_07442504.1| single-strand binding protein ssb [Mycobacterium tuberculosis SUMu007] gi|306970233|ref|ZP_07482894.1| single-strand binding protein ssb [Mycobacterium tuberculosis SUMu009] gi|308347725|gb|EFP36576.1| single-strand binding protein ssb [Mycobacterium tuberculosis SUMu007] gi|308352349|gb|EFP41200.1| single-strand binding protein ssb [Mycobacterium tuberculosis SUMu009] Length=164 Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 162/164 (99%), Positives = 164/164 (100%), Gaps = 0/164 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW Sbjct 1 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVD+IGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDDIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 >gi|340625087|ref|YP_004743539.1| putative single-strand binding protein SSB [Mycobacterium canettii CIPT 140010059] gi|340003277|emb|CCC42394.1| putative single-strand binding protein SSB (helix-destabilizing protein) [Mycobacterium canettii CIPT 140010059] Length=164 Score = 324 bits (831), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 162/164 (99%), Positives = 163/164 (99%), Gaps = 0/164 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW Sbjct 1 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRSGGFGSGSRPAPAQ SSASGDDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGFGSGSRPAPAQASSASGDDPWGSAPASGSFGGGDDEPPF 164 >gi|289445580|ref|ZP_06435324.1| single-strand binding protein ssb [Mycobacterium tuberculosis CPHL_A] gi|289418538|gb|EFD15739.1| single-strand binding protein ssb [Mycobacterium tuberculosis CPHL_A] Length=164 Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/164 (99%), Positives = 163/164 (99%), Gaps = 0/164 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW Sbjct 1 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKR VIEVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRIVIEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 >gi|41406166|ref|NP_959002.1| single-strand DNA-binding protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394514|gb|AAS02385.1| Ssb [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459416|gb|EGO38358.1| single stranded DNA-binding protein [Mycobacterium avium subsp. paratuberculosis S397] Length=168 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/168 (90%), Positives = 157/168 (94%), Gaps = 4/168 (2%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRS----GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GGFG GSR PA SSA DDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGGGGGFGGGSRQQPAPASSAPADDPWGSAPASGSFGGGDDEPPF 168 >gi|342860216|ref|ZP_08716868.1| single-stranded DNA-binding protein [Mycobacterium colombiense CECT 3035] gi|342132594|gb|EGT85823.1| single-stranded DNA-binding protein [Mycobacterium colombiense CECT 3035] Length=173 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/173 (87%), Positives = 155/173 (90%), Gaps = 9/173 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRS---------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GG G GSR A SSA DDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGGGGGGGFGGGGGGSRQQSAPASSAPADDPWGSAPASGSFGGGDDEPPF 173 >gi|254818592|ref|ZP_05223593.1| single-stranded DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length=172 Score = 283 bits (723), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 148/172 (87%), Positives = 155/172 (91%), Gaps = 8/172 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRS--------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GG G GSR A +SA DDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGGGGGFGGGGGGGSRQQAAPATSAPADDPWGSAPASGSFGGGDDEPPF 172 >gi|254773121|ref|ZP_05214637.1| single-stranded DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] Length=168 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/168 (89%), Positives = 155/168 (93%), Gaps = 4/168 (2%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRS----GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GGFG GSR A SSA DDPWGSA ASGSFGGGDDEPPF Sbjct 121 SRSGGGGGGFGGGSRQQSAPASSAPADDPWGSASASGSFGGGDDEPPF 168 >gi|240168785|ref|ZP_04747444.1| single-stranded DNA-binding protein [Mycobacterium kansasii ATCC 12478] Length=170 Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 150/171 (88%), Positives = 155/171 (91%), Gaps = 8/171 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRS-----GGFGSGSRPA--PAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS G G GSRPA PA + GDDPWGSAPASGSF GGDDEPPF Sbjct 121 SRSGGGGGFGGGGGSRPATPPASGTPGPGDDPWGSAPASGSF-GGDDEPPF 170 >gi|145221469|ref|YP_001132147.1| single-stranded DNA-binding protein [Mycobacterium gilvum PYR-GCK] gi|145213955|gb|ABP43359.1| single-strand binding protein [Mycobacterium gilvum PYR-GCK] Length=170 Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 142/172 (83%), Positives = 152/172 (89%), Gaps = 10/172 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTPSGAAVANFTVASTPR++DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTIITVIGNLTADPELRFTPSGAAVANFTVASTPRMFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESL RG+RVIVSGRLKQRSFETREGEKRTV+E+EVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLVRGSRVIVSGRLKQRSFETREGEKRTVMELEVDEIGPSLRYATAKVNKA 120 Query 121 SRS--------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GG G SRPAP+ T A +DPWGSAPASGSFGG DDEPPF Sbjct 121 SRSGGGGGGFGGGGGGNSRPAPSNTGPA--EDPWGSAPASGSFGGADDEPPF 170 >gi|15828449|ref|NP_302712.1| single-stranded DNA-binding protein [Mycobacterium leprae TN] gi|221230926|ref|YP_002504342.1| single-stranded DNA-binding protein [Mycobacterium leprae Br4923] gi|13432209|sp|P46390.2|SSB_MYCLE RecName: Full=Single-stranded DNA-binding protein; Short=SSB; AltName: Full=Helix-destabilizing protein 9 more sequence titles Length=168 Score = 273 bits (697), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 147/168 (88%), Positives = 152/168 (91%), Gaps = 4/168 (2%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTITIVGNLTADPELRFT SGAAV NFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 ----SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 GGFGSGSR APAQ S GDDPWGSAP SGSFG GD+EPPF Sbjct 121 SRSGGGGGGFGSGSRQAPAQMSGGVGDDPWGSAPTSGSFGVGDEEPPF 168 >gi|315446779|ref|YP_004079658.1| single-strand binding protein [Mycobacterium sp. Spyr1] gi|315265082|gb|ADU01824.1| single-strand binding protein [Mycobacterium sp. Spyr1] Length=169 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/171 (83%), Positives = 150/171 (88%), Gaps = 9/171 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTPSGAAVANFTVASTPR++DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTIITVIGNLTADPELRFTPSGAAVANFTVASTPRMFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESL RG+RVIVSGRLKQRSFETREGEKRTV+E+EVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLVRGSRVIVSGRLKQRSFETREGEKRTVMELEVDEIGPSLRYATAKVNKA 120 Query 121 SRS-------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GG G SRPAP A +DPWGSAPASGSF GGDDEPPF Sbjct 121 SRSGGGGGFGGGGGGNSRPAPPNNGPA--EDPWGSAPASGSFSGGDDEPPF 169 >gi|296167065|ref|ZP_06849477.1| single-strand binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897622|gb|EFG77216.1| single-strand binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=169 Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 144/169 (86%), Positives = 149/169 (89%), Gaps = 5/169 (2%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVFEVEVDEIGPSLRYATAKVNKA 120 Query 121 -----SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 G G GSR A S A DDPWGSAPASGSFGGGDDEPPF Sbjct 121 SRSGGGGGFGGGGGSRQGSAPASGAPADDPWGSAPASGSFGGGDDEPPF 169 >gi|118469435|ref|YP_891096.1| single-stranded DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|37999460|sp|Q9AFI5.1|SSB_MYCS2 RecName: Full=Single-stranded DNA-binding protein; Short=SSB; AltName: Full=Helix-destabilizing protein gi|75765436|pdb|1X3E|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding Protein From Mycobacterium Smegmatis 7 more sequence titles Length=165 Score = 269 bits (688), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 140/165 (85%), Positives = 149/165 (91%), Gaps = 1/165 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPR++DRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQT-SSASGDDPWGSAPASGSFGGGDDEPPF 164 SRSGG G G + S DDPWGSAPASGSF G DDEPPF Sbjct 121 SRSGGGGGGFGSGGGGSRQSEPKDDPWGSAPASGSFSGADDEPPF 165 >gi|118615984|ref|YP_904316.1| single-stranded DNA-binding protein [Mycobacterium ulcerans Agy99] gi|118568094|gb|ABL02845.1| single-strand binding protein Ssb [Mycobacterium ulcerans Agy99] Length=171 Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/172 (88%), Positives = 157/172 (92%), Gaps = 9/172 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTV+EVEV+EIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVVEVEVEEIGPSLRYATAKVNKA 120 Query 121 SR-------SGGFGSGSRPAPAQTSS-ASGDDPWGSAPASGSFGGGDDEPPF 164 SR GG G G+R APAQ SS A GDDPWGSAPASGSF GGDDEPPF Sbjct 121 SRGGGGGGFGGGGGGGARQAPAQASSPAGGDDPWGSAPASGSF-GGDDEPPF 171 >gi|183980108|ref|YP_001848399.1| single-strand binding protein Ssb [Mycobacterium marinum M] gi|183173434|gb|ACC38544.1| single-strand binding protein Ssb [Mycobacterium marinum M] Length=175 Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 151/176 (86%), Positives = 157/176 (90%), Gaps = 13/176 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTV+EVEV+EIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVVEVEVEEIGPSLRYATAKVNKA 120 Query 121 SR-----------SGGFGSGSRPAPAQTSS-ASGDDPWGSAPASGSFGGGDDEPPF 164 SR GG G G+R APAQ SS A GDDPWGSAPASGSF GGDDEPPF Sbjct 121 SRGGGGGGFGGGGGGGGGGGARQAPAQASSPAGGDDPWGSAPASGSF-GGDDEPPF 175 >gi|333992947|ref|YP_004525561.1| single-strand binding protein Ssb [Mycobacterium sp. JDM601] gi|333488915|gb|AEF38307.1| single-strand binding protein Ssb [Mycobacterium sp. JDM601] Length=173 Score = 263 bits (671), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 134/170 (79%), Positives = 146/170 (86%), Gaps = 8/170 (4%) Query 3 GDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWRE 62 GDTTIT+VGNLTADP+LRFTPSGAAVANFTVASTPRIYDRQ+GEWKDG+ALFLRCNIWRE Sbjct 4 GDTTITVVGNLTADPDLRFTPSGAAVANFTVASTPRIYDRQSGEWKDGDALFLRCNIWRE 63 Query 63 AAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASR 122 AAENVAESLTRG+RVIV+GRL+QRSFETREGEKRTV E+EVDE+GPSLRYATAK+NK SR Sbjct 64 AAENVAESLTRGSRVIVTGRLRQRSFETREGEKRTVYEIEVDEVGPSLRYATAKINKVSR 123 Query 123 SGGFGSGSRPAP--------AQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 GG G AQ+ A +DPWGSAPASGSFGG DDEPPF Sbjct 124 GGGGGGFGAGGGAAAGAAPMAQSGGAPAEDPWGSAPASGSFGGADDEPPF 173 >gi|312141933|ref|YP_004009269.1| single-strand binding protein [Rhodococcus equi 103S] gi|325672813|ref|ZP_08152507.1| single-strand binding protein [Rhodococcus equi ATCC 33707] gi|311891272|emb|CBH50593.1| single-strand binding protein [Rhodococcus equi 103S] gi|325556066|gb|EGD25734.1| single-strand binding protein [Rhodococcus equi ATCC 33707] Length=177 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 137/177 (78%), Positives = 149/177 (85%), Gaps = 13/177 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTP+GAAVANFTVASTPR +DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPAGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIVSGRLKQRS+ETREGEKRTV+E+EVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVSGRLKQRSYETREGEKRTVVELEVDEIGPSLRYATAKVNKA 120 Query 121 SR----------SGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFG---GGDDEPPF 164 +R S G G RPA SS G+DPWGSAP +GSFG GGDDEPPF Sbjct 121 NRGGGGGGGFGGSSGGSGGGRPASNYNSSPGGEDPWGSAPQAGSFGGSRGGDDEPPF 177 >gi|169631971|ref|YP_001705620.1| single-stranded DNA-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243938|emb|CAM64966.1| Single-stranded DNA-binding protein [Mycobacterium abscessus] Length=165 Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/166 (84%), Positives = 146/166 (88%), Gaps = 3/166 (1%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRI+DRQ+ EWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIFDRQSSEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQTSSAS--GDDPWGSAPASGSFGGGDDEPPF 164 SR GG G G S +S DDPWGSAPASGS DDEPPF Sbjct 121 SRGGGGGGGFGGGGGGGSRSSEPADDPWGSAPASGS-TAADDEPPF 165 >gi|120406963|ref|YP_956792.1| single-stranded DNA-binding protein [Mycobacterium vanbaalenii PYR-1] gi|119959781|gb|ABM16786.1| single-strand binding protein [Mycobacterium vanbaalenii PYR-1] Length=170 Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 145/173 (84%), Positives = 154/173 (90%), Gaps = 12/173 (6%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEV+EIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVEEIGPSLRYATAKVNKA 120 Query 121 SRS---------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRS GG G SRPA +SA +DPWGSAPASGSFGG DDEPPF Sbjct 121 SRSGGGGGGFGGGGGGGNSRPA---ANSAPAEDPWGSAPASGSFGGADDEPPF 170 >gi|108802328|ref|YP_642525.1| single-stranded DNA-binding protein [Mycobacterium sp. MCS] gi|119871481|ref|YP_941433.1| single-stranded DNA-binding protein [Mycobacterium sp. KMS] gi|126438308|ref|YP_001073999.1| single-stranded DNA-binding protein [Mycobacterium sp. JLS] gi|108772747|gb|ABG11469.1| single-strand binding protein [Mycobacterium sp. MCS] gi|119697570|gb|ABL94643.1| single-strand binding protein [Mycobacterium sp. KMS] gi|126238108|gb|ABO01509.1| single-strand binding protein [Mycobacterium sp. JLS] Length=172 Score = 260 bits (664), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 139/172 (81%), Positives = 148/172 (87%), Gaps = 8/172 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNK- 119 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNK Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVMEVEVDEIGPSLRYATAKVNKA 120 Query 120 -------ASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 GG G GSR +A+ +DPWGSAPASGSF G DDEPPF Sbjct 121 SRGGGGGGGFGGGGGGGSRAGGGGGQAAAAEDPWGSAPASGSFSGADDEPPF 172 >gi|54027547|ref|YP_121789.1| single-stranded DNA-binding protein [Nocardia farcinica IFM 10152] gi|54019055|dbj|BAD60425.1| putative single-strand binding protein [Nocardia farcinica IFM 10152] Length=178 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 134/178 (76%), Positives = 147/178 (83%), Gaps = 14/178 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTP+G AVANFTVASTPR++DR T EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPAGQAVANFTVASTPRVFDRNTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIVSGRLKQRS+ETREGEKRTV+E+EVDE+GPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVSGRLKQRSYETREGEKRTVVELEVDEVGPSLRYATAKVNKA 120 Query 121 SR------------SGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGG--DDEPPF 164 SR GG+ S S A+ DDPWGSAPA+GSFGGG DDEPPF Sbjct 121 SRGGGGGGGFGGGGGGGYASDRSGGGGSRSGAAEDDPWGSAPAAGSFGGGRMDDEPPF 178 >gi|257057877|ref|YP_003135709.1| single-strand binding protein [Saccharomonospora viridis DSM 43017] gi|256587749|gb|ACU98882.1| single-strand binding protein [Saccharomonospora viridis DSM 43017] Length=156 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/164 (79%), Positives = 138/164 (85%), Gaps = 8/164 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT+VGNLTADPELRFTPSGAAVANFTVASTPR++DRQTGEWKDGEALFLRCNIW Sbjct 1 MAGDTIITVVGNLTADPELRFTPSGAAVANFTVASTPRVFDRQTGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESLTRGARVIV GRLKQRSFET+EGEKRTV+E+EVDEIGPSLRYATAKVNK Sbjct 61 RQAAENVAESLTRGARVIVQGRLKQRSFETKEGEKRTVVELEVDEIGPSLRYATAKVNKV 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SR + A DDPWGSAP +G GG DEPPF Sbjct 121 SRGS--------GGSGFGGAPADDPWGSAPPAGGAGGFSDEPPF 156 >gi|226309317|ref|YP_002769277.1| single-stranded DNA-binding protein [Rhodococcus erythropolis PR4] gi|229489902|ref|ZP_04383757.1| single-strand DNA-binding protein [Rhodococcus erythropolis SK121] gi|226188434|dbj|BAH36538.1| single-stranded DNA-binding protein [Rhodococcus erythropolis PR4] gi|229323198|gb|EEN88964.1| single-strand DNA-binding protein [Rhodococcus erythropolis SK121] Length=174 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 132/177 (75%), Positives = 148/177 (84%), Gaps = 16/177 (9%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTP+GAAVANFTVASTPR +DR + EWKDG+ALF+RCNIW Sbjct 1 MAGDTIITVIGNLTADPELRFTPAGAAVANFTVASTPRTFDRNSNEWKDGDALFMRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIVSGRLKQRS+ETREGEKRTV+E+EVDEIGPSL+YATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVSGRLKQRSYETREGEKRTVVELEVDEIGPSLKYATAKVNKA 120 Query 121 SR-----------SGGFGSGSRPAPAQTSSASGDDPWGSAP-ASGSFGG-GDDEPPF 164 +R S G G RP+ A + GDDPWGSAP ASGSFGG G DEPPF Sbjct 121 NRGGGGGGGNFGGSSGGSGGGRPSAAPS---GGDDPWGSAPQASGSFGGAGSDEPPF 174 >gi|301321557|gb|ADK68947.1| Single-stranded DNA-binding protein [Gordonia sp. KTR9] Length=205 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 123/171 (72%), Positives = 139/171 (82%), Gaps = 7/171 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTPSGAAVANFTVASTPR +DRQT EWKDGEALFLRCNIW Sbjct 35 MAGDTVITVIGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCNIW 94 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVN-- 118 R+AAENV ESLT+G+RVIV GRLKQRS+ET+EGE+RTV+E+EVDEIGPSLRYATAKVN Sbjct 95 RDAAENVTESLTKGSRVIVQGRLKQRSYETKEGERRTVVELEVDEIGPSLRYATAKVNRA 154 Query 119 -----KASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 G G+G ++ DDPWGSAPAS SFGG +DEPPF Sbjct 155 SRGGGGGGGFGSGGAGGSRGGGNSNQQVADDPWGSAPASSSFGGHNDEPPF 205 >gi|258655465|ref|YP_003204621.1| single-strand binding protein [Nakamurella multipartita DSM 44233] gi|258558690|gb|ACV81632.1| single-strand binding protein [Nakamurella multipartita DSM 44233] Length=165 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/171 (77%), Positives = 142/171 (84%), Gaps = 13/171 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT +T++GNLTADPELRFT SGAAVANFTVASTPR +DR +GEWKDGEALFLRCNIW Sbjct 1 MAGDTIMTVIGNLTADPELRFTASGAAVANFTVASTPRTFDRASGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+ AENVAESLTRGARVIVSGRLKQRSFET+EGEKRTVIE+EVDEIGPSLRYATAKVN+A Sbjct 61 RQPAENVAESLTRGARVIVSGRLKQRSFETKEGEKRTVIELEVDEIGPSLRYATAKVNRA 120 Query 121 SRS-------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 RS G G GSRPA A DDPWGSAP +GS G DEPPF Sbjct 121 QRSDGGGGGGYGSGGGSRPA------AQNDDPWGSAPPAGSSSGYSDEPPF 165 >gi|262204543|ref|YP_003275751.1| single-strand-binding protein [Gordonia bronchialis DSM 43247] gi|262087890|gb|ACY23858.1| single-strand binding protein [Gordonia bronchialis DSM 43247] Length=173 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/173 (74%), Positives = 141/173 (82%), Gaps = 9/173 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT+VGNLTADPELRFTPSGAAVANFTVASTPR +DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENV ESLT+GARVIV GRLKQRS+ET+EGE+RTV+E+EVDEIGPSLRYATAKVNK Sbjct 61 RDAAENVTESLTKGARVIVQGRLKQRSYETKEGERRTVVELEVDEIGPSLRYATAKVNKT 120 Query 121 -------SRSGGFGSGSRPAPAQTSSASGDDPWGSAPA--SGSFGGGDDEPPF 164 G G G+ ++ +DPWGSAPA SGSF GGDDEPPF Sbjct 121 SRSGGGGGGFGSSGGGASRGGGGSNQQVAEDPWGSAPASNSGSFSGGDDEPPF 173 >gi|325674331|ref|ZP_08154020.1| single-strand binding protein [Rhodococcus equi ATCC 33707] gi|325555011|gb|EGD24684.1| single-strand binding protein [Rhodococcus equi ATCC 33707] Length=161 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 123/164 (75%), Positives = 137/164 (84%), Gaps = 3/164 (1%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT ITI+GNLTADPELRFTP+GAAVANFTVASTPRI+DRQ+ +WKDG+ALFLRC IW Sbjct 1 MAGDTVITIIGNLTADPELRFTPAGAAVANFTVASTPRIFDRQSNQWKDGDALFLRCTIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAE+LTRG RVIVSGRLKQRS+ETREGEKRTV+E+EVDEIGPSLRYATAKVNK Sbjct 61 REAAENVAETLTRGTRVIVSGRLKQRSYETREGEKRTVVELEVDEIGPSLRYATAKVNKV 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SRSG G DDPWG+A +GS+ DDEPPF Sbjct 121 SRSGNGSGGGYAGNQDRERPPADDPWGNASQAGSY---DDEPPF 161 >gi|226362638|ref|YP_002780416.1| single-stranded DNA-binding protein [Rhodococcus opacus B4] gi|226241123|dbj|BAH51471.1| single-stranded DNA-binding protein [Rhodococcus opacus B4] Length=173 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 132/173 (77%), Positives = 145/173 (84%), Gaps = 9/173 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTP+GAAVANFTVASTPR +DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPAGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIVSGRLKQRS+ETREGEKRTV+E+EVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVSGRLKQRSYETREGEKRTVVELEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQT-----SSASGDDPWGSAPAS----GSFGGGDDEPPF 164 +R GG G G + S+ GDDPWGSAP + G GGG DEPPF Sbjct 121 NRGGGGGGGFGSSGGSGGGRPQSNTGGDDPWGSAPQASGSFGGSGGGSDEPPF 173 >gi|111020420|ref|YP_703392.1| single-stranded DNA-binding protein [Rhodococcus jostii RHA1] gi|110819950|gb|ABG95234.1| single-strand binding protein [Rhodococcus jostii RHA1] Length=173 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 132/173 (77%), Positives = 145/173 (84%), Gaps = 9/173 (5%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTP+GAAVANFTVASTPR +DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPAGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIVSGRLKQRS+ETREGEKRTV+E+EVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVSGRLKQRSYETREGEKRTVVELEVDEIGPSLRYATAKVNKA 120 Query 121 SRSGGFGSGSRPAPAQT-----SSASGDDPWGSAPAS----GSFGGGDDEPPF 164 +R GG G G + S+ GDDPWGSAP + G GGG DEPPF Sbjct 121 NRGGGSGGGFGSSGGSGGGRPQSNTGGDDPWGSAPQASGSFGGSGGGSDEPPF 173 >gi|296141833|ref|YP_003649076.1| single-strand binding protein [Tsukamurella paurometabola DSM 20162] gi|296029967|gb|ADG80737.1| single-strand binding protein [Tsukamurella paurometabola DSM 20162] Length=177 Score = 239 bits (611), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/177 (71%), Positives = 142/177 (81%), Gaps = 13/177 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTPSGAAVANFTVASTPR +DR T EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPSGAAVANFTVASTPRTFDRNTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLT+G RVIVSGRLKQRS++ REG++RTV+E+EVDEIGPSLRYATAK + Sbjct 61 REAAENVAESLTKGTRVIVSGRLKQRSYDDREGQRRTVVELEVDEIGPSLRYATAKPVRT 120 Query 121 SRSGGFGSG-----------SRPA--PAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 R GG G S+PA A + +DPWGSAPA+GSFGGG D+PPF Sbjct 121 QRGGGGGGFSGGGQGGGGGYSQPAAQSAPRQNQPQEDPWGSAPAAGSFGGGSDDPPF 177 >gi|331700356|ref|YP_004336595.1| single-strand binding protein [Pseudonocardia dioxanivorans CB1190] gi|326955045|gb|AEA28742.1| single-strand binding protein [Pseudonocardia dioxanivorans CB1190] Length=175 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/175 (71%), Positives = 137/175 (79%), Gaps = 11/175 (6%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+T IT+VGNLTADPELRFTPSGAAVANFTVASTPR +DRQ+GEWKDGEALFLRCN+W Sbjct 1 MAGETVITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQSGEWKDGEALFLRCNVW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAE+LTRG RV+V GRLKQRSFETREGEKRTV+E+EVDE+GPSLRYATAKV K Sbjct 61 RQAAENVAETLTRGMRVMVQGRLKQRSFETREGEKRTVVELEVDEVGPSLRYATAKVAKV 120 Query 121 SRSGGFGSGSRPAPAQTSSAS-----------GDDPWGSAPASGSFGGGDDEPPF 164 SR G G +S DDPWGSAP +GS DDEPPF Sbjct 121 SRGDGSGGFGGGGGGGRASGGGGGGGGGGGGYADDPWGSAPPAGSGPAMDDEPPF 175 >gi|303324825|pdb|3A5U|A Chain A, Promiscuity And Specificity In Dna Binding To Ssb: Insights From The Structure Of The Mycobacterium Smegmatis Ssb-Ssdna Complex gi|303324826|pdb|3A5U|B Chain B, Promiscuity And Specificity In Dna Binding To Ssb: Insights From The Structure Of The Mycobacterium Smegmatis Ssb-Ssdna Complex Length=130 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/123 (94%), Positives = 123/123 (100%), Gaps = 0/123 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT+VGNLTADPELRFTPSGAAVANFTVASTPR++DRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 Query 121 SRS 123 SRS Sbjct 121 SRS 123 >gi|324998551|ref|ZP_08119663.1| single-strand DNA-binding protein [Pseudonocardia sp. P1] Length=185 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/185 (69%), Positives = 139/185 (76%), Gaps = 21/185 (11%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+T IT+VGNLTADPELRFTPSGAAVANFTVASTPR +DRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGETVITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESLTRGARV+V GRL+QRSFETREGEKRTV+E+EVDE+GPSLRYATAKVNK Sbjct 61 RQAAENVAESLTRGARVVVQGRLRQRSFETREGEKRTVVEMEVDEVGPSLRYATAKVNKV 120 Query 121 SR---------------------SGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGD 159 SR G G +S DDPWGSAP +GS D Sbjct 121 SRGGGSGGFGGGGGGGGYDGGGGGFGGGQQGGGGSGGGNSGGYDDPWGSAPPAGSGAASD 180 Query 160 DEPPF 164 DEPPF Sbjct 181 DEPPF 185 >gi|296392716|ref|YP_003657600.1| single-strand binding protein [Segniliparus rotundus DSM 44985] gi|296179863|gb|ADG96769.1| single-strand binding protein [Segniliparus rotundus DSM 44985] Length=166 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/171 (76%), Positives = 142/171 (84%), Gaps = 12/171 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT+VGNLTADPELRFTP+GAAVANFTVASTPR++DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVVGNLTADPELRFTPTGAAVANFTVASTPRMFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRS+ETREGEKRTV+E+EVDEIGPSLRY+TAKVN+A Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSYETREGEKRTVVELEVDEIGPSLRYSTAKVNRA 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSF-------GGGDDEPPF 164 +R G G G S GDDPW SAPA F G GDDEPPF Sbjct 121 ARGGSSGGGG-----GRSGGYGDDPWASAPAGDDFPSSSSRSGSGDDEPPF 166 >gi|302531299|ref|ZP_07283641.1| single-strand binding protein [Streptomyces sp. AA4] gi|302440194|gb|EFL12010.1| single-strand binding protein [Streptomyces sp. AA4] Length=175 Score = 236 bits (602), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 130/175 (75%), Positives = 140/175 (80%), Gaps = 11/175 (6%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT+VGNLT+DPELRFTPSGAAVANFTVASTPR DRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTVITVVGNLTSDPELRFTPSGAAVANFTVASTPRTLDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESLTRGARV+V GRLKQRSFET+EGEKRTV+E+EVDEIGPSLRYATAKVNK Sbjct 61 RQAAENVAESLTRGARVVVQGRLKQRSFETKEGEKRTVVELEVDEIGPSLRYATAKVNKV 120 Query 121 S----------RSGGFGSGSRPAPAQTSSASGDDPWGSA-PASGSFGGGDDEPPF 164 S GGF G +SA DDPWGSA PA G GG DEPPF Sbjct 121 SRGGGGGGDFGGGGGFNGGGGNRGGGGNSAPADDPWGSAPPAGGGGGGFSDEPPF 175 >gi|886304|gb|AAB53120.1| putative [Mycobacterium leprae] Length=140 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/120 (95%), Positives = 118/120 (99%), Gaps = 0/120 (0%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTITIVGNLTADPELRFT SGAAV NFTVASTPRIYDRQ+GEWKDGEALFLRCNIW Sbjct 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRGARVIV+GRLKQRSFETREGEKRTV+EVEVDEIGPSLRYATAKVNKA Sbjct 61 REAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 >gi|317507600|ref|ZP_07965314.1| single-strand binding protein [Segniliparus rugosus ATCC BAA-974] gi|316254120|gb|EFV13476.1| single-strand binding protein [Segniliparus rugosus ATCC BAA-974] Length=165 Score = 233 bits (594), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 125/170 (74%), Positives = 142/170 (84%), Gaps = 11/170 (6%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+T IT+VGNLTADPELRFTP+GAAVANFTVASTPR +DRQ+ EWKDGEALFLRCNIW Sbjct 1 MAGETVITVVGNLTADPELRFTPTGAAVANFTVASTPRTFDRQSNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLTRG+RVIV+GRLKQRS+ETREGEKRTV+E+EVDEIGPSLRY+TAKVN+A Sbjct 61 REAAENVAESLTRGSRVIVTGRLKQRSYETREGEKRTVVELEVDEIGPSLRYSTAKVNRA 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSF------GGGDDEPPF 164 SR GG G G+ ++ DDPW SAPA + GDDEPPF Sbjct 121 SRGGGGGGGA-----RSGGYGNDDPWASAPAGDDYQSSSSSRSGDDEPPF 165 >gi|343928598|ref|ZP_08768043.1| single-stranded DNA-binding protein [Gordonia alkanivorans NBRC 16433] gi|343761347|dbj|GAA14969.1| single-stranded DNA-binding protein [Gordonia alkanivorans NBRC 16433] Length=175 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 126/175 (72%), Positives = 141/175 (81%), Gaps = 11/175 (6%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTPSGAAVANFTVASTPR +DRQT EWKDGEALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENV ESLT+G+RVIV GRLKQRS+ET+EGE+RTV+E+EVDEIGPSLRYATAKVN+A Sbjct 61 RDAAENVTESLTKGSRVIVQGRLKQRSYETKEGERRTVVELEVDEIGPSLRYATAKVNRA 120 Query 121 ---------SRSGGFGSGSRPAPAQTSSASGDDPWGSAPA--SGSFGGGDDEPPF 164 G G G ++ DDPWGSAPA GSFGGGDDEPPF Sbjct 121 SRGGGGGGGGGGFGSGGGGGSRGGGSNQQVADDPWGSAPASSGGSFGGGDDEPPF 175 >gi|134103770|ref|YP_001109431.1| single-strand DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291007703|ref|ZP_06565676.1| single-strand DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133916393|emb|CAM06506.1| single-strand DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length=151 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/156 (78%), Positives = 131/156 (84%), Gaps = 5/156 (3%) Query 9 IVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVA 68 +VGNLTADPELRFTPSGAAVANFTVASTPR +DRQTGEWKDGEALFLRCNIWR+AAENVA Sbjct 1 MVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTGEWKDGEALFLRCNIWRQAAENVA 60 Query 69 ESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGS 128 ESLTRG RV+V GRL+QRSFET+EGEKRTV+E+EVDEIGPSLRYATAKVNK SR S Sbjct 61 ESLTRGMRVVVQGRLRQRSFETKEGEKRTVVELEVDEIGPSLRYATAKVNKVSR-----S 115 Query 129 GSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 G + DDPWGSAP +GS GG DEPPF Sbjct 116 GGGFGGPGGGAPPADDPWGSAPPAGSGGGFSDEPPF 151 >gi|256381018|ref|YP_003104678.1| single-strand binding protein [Actinosynnema mirum DSM 43827] gi|255925321|gb|ACU40832.1| single-strand binding protein [Actinosynnema mirum DSM 43827] Length=168 Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 124/168 (74%), Positives = 143/168 (86%), Gaps = 4/168 (2%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+TTIT+VGNLT+DPELRFT SGAAVA FTVASTPR +DRQ+GEWKDGEALFLRCN+W Sbjct 1 MAGETTITVVGNLTSDPELRFTQSGAAVAGFTVASTPRTFDRQSGEWKDGEALFLRCNVW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+ AENVAE+LTRG+RVIV+GRL+QRSFET+EGEKRTV+E+EVDEIGPSLRYATAKVNK Sbjct 61 RQVAENVAETLTRGSRVIVTGRLRQRSFETKEGEKRTVVELEVDEIGPSLRYATAKVNKV 120 Query 121 SR----SGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SR GG+G G + + A DDPWGSAP +GS GG DEPPF Sbjct 121 SRGDGGGGGYGGGQQQSRGGGGGAPADDPWGSAPPAGSGGGFADEPPF 168 >gi|333922181|ref|YP_004495762.1| Single-stranded DNA-binding protein [Amycolicicoccus subflavus DQS3-9A1] gi|333484402|gb|AEF42962.1| Single-stranded DNA-binding protein [Amycolicicoccus subflavus DQS3-9A1] Length=166 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/166 (72%), Positives = 136/166 (82%), Gaps = 2/166 (1%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT++GNLTADPELRFTP+GAAVA FTVASTPR Y+ QT +W+DG+ALFLRCNIW Sbjct 1 MAGDTVITVIGNLTADPELRFTPAGAAVATFTVASTPRKYNSQTSQWEDGDALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESL +G RVIV+GRL+QRSFETREGEKRTVIE+EVDE+GPSLRYATAKVNKA Sbjct 61 RQAAENVAESLQKGMRVIVNGRLRQRSFETREGEKRTVIELEVDEVGPSLRYATAKVNKA 120 Query 121 --SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 S G G G ++ + DPWGSAP +G F DDEPPF Sbjct 121 GRSDGGQGGGGRGGGFTAGAATAASDPWGSAPPAGGFAAQDDEPPF 166 >gi|284993410|ref|YP_003411965.1| single-strand binding protein [Geodermatophilus obscurus DSM 43160] gi|284066656|gb|ADB77594.1| single-strand binding protein [Geodermatophilus obscurus DSM 43160] Length=159 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 121/165 (74%), Positives = 134/165 (82%), Gaps = 7/165 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+T IT++GNLT+DPELRFTPSGAAVANFTVASTPR +DRQ+ EWKDGEALFLRCN+W Sbjct 1 MAGETVITVIGNLTSDPELRFTPSGAAVANFTVASTPRTFDRQSQEWKDGEALFLRCNVW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESLTRG+RVIVSGRLKQRSFET+EGEKRTV+E+EVDEIGPSLRYATAKV KA Sbjct 61 RQAAENVAESLTRGSRVIVSGRLKQRSFETKEGEKRTVVELEVDEIGPSLRYATAKVTKA 120 Query 121 SR-SGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 SR GG G G DPW S PA S DEPPF Sbjct 121 SRGEGGGGFGGGGGGGFGGGGGSSDPW-STPAPPS-----DEPPF 159 >gi|300791096|ref|YP_003771387.1| single-strand DNA-binding protein [Amycolatopsis mediterranei U32] gi|299800610|gb|ADJ50985.1| single-strand DNA-binding protein [Amycolatopsis mediterranei U32] gi|340532795|gb|AEK48000.1| single-strand DNA-binding protein [Amycolatopsis mediterranei S699] Length=171 Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 128/171 (75%), Positives = 139/171 (82%), Gaps = 7/171 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDT IT+VGNLT+DPELRFTPSGAAVANFTVASTPR D+Q+GEWKDGEALFLRCNIW Sbjct 1 MAGDTVITVVGNLTSDPELRFTPSGAAVANFTVASTPRTLDKQSGEWKDGEALFLRCNIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESLTRGARV+V GRLKQRSFET+EGEKRTV+E+EVDEIGPSLRYATAKVNK Sbjct 61 RQAAENVAESLTRGARVVVQGRLKQRSFETKEGEKRTVVELEVDEIGPSLRYATAKVNKV 120 Query 121 SRSGGFGSGSRPAPAQTSSAS-----GDDPWGSAPASGSFGGG--DDEPPF 164 SR GG G DDPWGSAPA+ S GGG DEPPF Sbjct 121 SRGGGGDFGGGGGGGGNRGGGGGGMPADDPWGSAPAASSGGGGGFSDEPPF 171 >gi|302527522|ref|ZP_07279864.1| single-strand binding protein [Streptomyces sp. AA4] gi|302436417|gb|EFL08233.1| single-strand binding protein [Streptomyces sp. AA4] Length=152 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 112/164 (69%), Positives = 132/164 (81%), Gaps = 12/164 (7%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+T IT+VGNLT+DPELRFTPSGAAVANFTVASTPR DR++GEWKDGE LFLRC+IW Sbjct 1 MAGETVITVVGNLTSDPELRFTPSGAAVANFTVASTPRTLDRESGEWKDGEPLFLRCSIW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESLTRGARV+V+GRL QRSFET+EGEKRTV+E++VDEIGPSLRYATA++ K Sbjct 61 RQAAENVAESLTRGARVLVTGRLVQRSFETKEGEKRTVVELQVDEIGPSLRYATARITKV 120 Query 121 SRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 +R+ SG G D WG+AP S G +EPPF Sbjct 121 NRNNSETSG-----------LGGDAWGTAPVSAGV-GTSEEPPF 152 >gi|325965471|ref|YP_004243376.1| single stranded DNA-binding protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471558|gb|ADX75242.1| single stranded DNA-binding protein [Arthrobacter phenanthrenivorans Sphe3] Length=298 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 115/171 (68%), Positives = 140/171 (82%), Gaps = 7/171 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+TTIT++GNLT+DPELRFTPSG+AVANFT+ASTPR +DRQ+ EWKDGE LFLR ++W Sbjct 128 MAGETTITVIGNLTSDPELRFTPSGSAVANFTIASTPRTFDRQSNEWKDGETLFLRASVW 187 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLT+G RVIV+GRLK RS+ET+EGEKRTVIE+EVDEIGPSLRYA AKVN+ Sbjct 188 REAAENVAESLTKGMRVIVTGRLKSRSYETKEGEKRTVIELEVDEIGPSLRYANAKVNRT 247 Query 121 SRS--GGFGSGSR-PAPAQTSSASGDDPW---GSAPASGSFGGG-DDEPPF 164 RS GG G+ + A ++ S DDPW ++ A+G +G G D EPPF Sbjct 248 QRSTQGGRGNDYQGSANSRPQSGPQDDPWAVPANSNAAGGWGNGPDSEPPF 298 >gi|302870698|ref|YP_003839335.1| single-strand binding protein [Micromonospora aurantiaca ATCC 27029] gi|315506935|ref|YP_004085822.1| single-strand binding protein [Micromonospora sp. L5] gi|302573557|gb|ADL49759.1| single-strand binding protein [Micromonospora aurantiaca ATCC 27029] gi|315413554|gb|ADU11671.1| single-strand binding protein [Micromonospora sp. L5] Length=169 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/169 (72%), Positives = 133/169 (79%), Gaps = 5/169 (2%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT++GNLT DPELRFTPSGAAVA F VASTPR D+ +GEWKDGE LFL C +W Sbjct 1 MAGDTTITVIGNLTDDPELRFTPSGAAVAKFRVASTPRFMDKASGEWKDGEPLFLSCTVW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAENVAESL RGARVIVSGRL+QRS+ETREGEKRTVIE+EVDEIGPSLRYATAKV K Sbjct 61 RQAAENVAESLQRGARVIVSGRLRQRSYETREGEKRTVIELEVDEIGPSLRYATAKVQKM 120 Query 121 SRSGGFGSGSRPAPAQTSSASG-DDPWGS---APASGSFGGG-DDEPPF 164 SRSGG G G Q DDPW S AP+ G GG D+EPPF Sbjct 121 SRSGGGGGGFGGGGGQGGGGGNFDDPWASAAPAPSRGGSGGNFDEEPPF 169 >gi|330470801|ref|YP_004408544.1| single-strand binding protein [Verrucosispora maris AB-18-032] gi|328813772|gb|AEB47944.1| single-strand binding protein [Verrucosispora maris AB-18-032] Length=176 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/170 (72%), Positives = 133/170 (79%), Gaps = 6/170 (3%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT++GNLT DPELRFTPSGAAVA F VASTPR D+ +GEWKDGE LFL C +W Sbjct 7 MAGDTTITVIGNLTDDPELRFTPSGAAVAKFRVASTPRFMDKASGEWKDGEPLFLACTVW 66 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAE+VAESL RGARVIVSGRL+QRS+ETREGEKRTVIE+EVDEIGPSLRYATAKV K Sbjct 67 RQAAEHVAESLQRGARVIVSGRLRQRSYETREGEKRTVIELEVDEIGPSLRYATAKVQKM 126 Query 121 SRSGGFGSGSRPAPAQTSSASG---DDPWGS-APASGSFGGG--DDEPPF 164 SRSGG G G G DDPW S APA GGG D+EPPF Sbjct 127 SRSGGSGGGFGGGGGGGQGGGGGNFDDPWASAAPAPSRSGGGNFDEEPPF 176 >gi|238061878|ref|ZP_04606587.1| single-strand binding protein [Micromonospora sp. ATCC 39149] gi|237883689|gb|EEP72517.1| single-strand binding protein [Micromonospora sp. ATCC 39149] Length=172 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 119/172 (70%), Positives = 133/172 (78%), Gaps = 8/172 (4%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AGDTTIT++GNLT DPELRFTPSGAAVA F VASTPR D+ +GEWKDGE LFL C +W Sbjct 1 MAGDTTITVIGNLTDDPELRFTPSGAAVAKFRVASTPRFMDKASGEWKDGEPLFLACTVW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 R+AAE+VAESL RGARVIVSGRL+QRS+ETREGEKRTVIE+EVDEIGPSLRYATAKV K Sbjct 61 RQAAEHVAESLQRGARVIVSGRLRQRSYETREGEKRTVIELEVDEIGPSLRYATAKVQKM 120 Query 121 SRS---GGFGSGSRPAPAQTSSASGDDPWGS---APASGSFGGG--DDEPPF 164 SRS GG G + DDPW S AP+ G GGG D+EPPF Sbjct 121 SRSGGGGGGFGGGGGGNQGGGGGNFDDPWASAAPAPSRGGSGGGNFDEEPPF 172 >gi|334338418|ref|YP_004543570.1| single-strand binding protein [Isoptericola variabilis 225] gi|334108786|gb|AEG45676.1| single-strand binding protein [Isoptericola variabilis 225] Length=176 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/176 (64%), Positives = 132/176 (75%), Gaps = 12/176 (6%) Query 1 VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60 +AG+T IT+VGNLTADPELRFTPSGAAVANFT+ASTPR +DRQT EWKDGEALFLRC++W Sbjct 1 MAGETVITVVGNLTADPELRFTPSGAAVANFTIASTPRTFDRQTNEWKDGEALFLRCSVW 60 Query 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKA 120 REAAENVAESLT+G RVI GRL QRS+ETREGEKRTV+E++VDEIGPSLR+A+AKV +A Sbjct 61 REAAENVAESLTKGMRVIAQGRLTQRSYETREGEKRTVVELQVDEIGPSLRFASAKVTRA 120 Query 121 SRS------------GGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF 164 RS G G + + +DPW +A + GG DEPPF Sbjct 121 QRSGGGGFGGGGGYGGPSGGNAGGFGSSGGGQQQNDPWATAGPASQGGGFSDEPPF 176 Lambda K H 0.312 0.130 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129330420882 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40