BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0055
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839432|ref|NP_334469.1| 30S ribosomal protein S18 [Mycobact... 171 3e-41
gi|118615985|ref|YP_904317.1| 30S ribosomal protein S18 [Mycobac... 168 2e-40
gi|296167064|ref|ZP_06849476.1| 30S ribosomal protein S18 [Mycob... 166 1e-39
gi|41406167|ref|NP_959003.1| 30S ribosomal protein S18 [Mycobact... 165 2e-39
gi|240168786|ref|ZP_04747445.1| 30S ribosomal protein S18 [Mycob... 163 8e-39
gi|118470101|ref|YP_891095.1| 30S ribosomal protein S18 [Mycobac... 159 1e-37
gi|15828448|ref|NP_302711.1| 30S ribosomal protein S18 [Mycobact... 159 2e-37
gi|108802327|ref|YP_642524.1| 30S ribosomal protein S18 [Mycobac... 158 2e-37
gi|333992946|ref|YP_004525560.1| 30S ribosomal protein S18-1 Rps... 158 3e-37
gi|145221470|ref|YP_001132148.1| 30S ribosomal protein S18 [Myco... 151 2e-35
gi|120406962|ref|YP_956791.1| 30S ribosomal protein S18 [Mycobac... 151 3e-35
gi|169631970|ref|YP_001705619.1| 30S ribosomal protein S18 [Myco... 150 5e-35
gi|262204542|ref|YP_003275750.1| 30S ribosomal protein S18 [Gord... 119 1e-25
gi|296141832|ref|YP_003649075.1| 30S ribosomal protein S18 [Tsuk... 119 1e-25
gi|343928597|ref|ZP_08768042.1| 30S ribosomal protein S18 [Gordo... 117 5e-25
gi|312141932|ref|YP_004009268.1| 30S ribosomal protein s18 rpsr ... 114 4e-24
gi|119718879|ref|YP_925844.1| 30S ribosomal protein S18 [Nocardi... 113 1e-23
gi|326383849|ref|ZP_08205533.1| 30S ribosomal protein S18 [Gordo... 113 1e-23
gi|312200937|ref|YP_004020998.1| ribosomal protein S18 [Frankia ... 112 2e-23
gi|336180314|ref|YP_004585689.1| 30S ribosomal protein S18 [Fran... 112 2e-23
gi|134103769|ref|YP_001109430.1| 30S ribosomal protein S18 [Sacc... 111 4e-23
gi|296271508|ref|YP_003654140.1| 30S ribosomal protein S18 [Ther... 110 6e-23
gi|54027548|ref|YP_121790.1| 30S ribosomal protein S18 [Nocardia... 110 6e-23
gi|324998552|ref|ZP_08119664.1| 30S ribosomal protein S18 [Pseud... 110 8e-23
gi|158319027|ref|YP_001511535.1| 30S ribosomal protein S18 [Fran... 110 9e-23
gi|331700355|ref|YP_004336594.1| 30S ribosomal protein S18 [Pseu... 109 1e-22
gi|297563757|ref|YP_003682731.1| 30S ribosomal protein S18 [Noca... 109 1e-22
gi|326329083|ref|ZP_08195412.1| ribosomal protein S18 [Nocardioi... 109 1e-22
gi|111020419|ref|YP_703391.1| 30S ribosomal protein S18 [Rhodoco... 109 1e-22
gi|226309316|ref|YP_002769276.1| 30S ribosomal protein S18 [Rhod... 108 3e-22
gi|271970520|ref|YP_003344716.1| 30S ribosomal protein S18 [Stre... 108 4e-22
gi|86743195|ref|YP_483595.1| 30S ribosomal protein S18 [Frankia ... 108 4e-22
gi|258655464|ref|YP_003204620.1| 30S ribosomal protein S18 [Naka... 107 5e-22
gi|284034855|ref|YP_003384786.1| 30S ribosomal protein S18 [Krib... 107 5e-22
gi|72163492|ref|YP_291149.1| 30S ribosomal protein S18 [Thermobi... 107 6e-22
gi|269129130|ref|YP_003302500.1| 30S ribosomal protein S18 [Ther... 106 1e-21
gi|311897277|dbj|BAJ29685.1| putative ribosomal protein S18 [Kit... 105 2e-21
gi|182437465|ref|YP_001825184.1| 30S ribosomal protein S18 [Stre... 105 2e-21
gi|111226184|ref|YP_716978.1| 30S ribosomal protein S18 [Frankia... 105 2e-21
gi|256389565|ref|YP_003111129.1| 30S ribosomal protein S18 [Cate... 105 3e-21
gi|302543993|ref|ZP_07296335.1| ribosomal protein S18 [Streptomy... 105 3e-21
gi|256381019|ref|YP_003104679.1| 30S ribosomal protein S18 [Acti... 104 5e-21
gi|333922180|ref|YP_004495761.1| 30S ribosomal protein S18 [Amyc... 103 6e-21
gi|295837785|ref|ZP_06824718.1| ribosomal protein S18 [Streptomy... 103 8e-21
gi|257057878|ref|YP_003135710.1| 30S ribosomal protein S18P [Sac... 103 1e-20
gi|254384805|ref|ZP_05000142.1| 30S ribosomal protein S18 [Strep... 102 1e-20
gi|302531300|ref|ZP_07283642.1| ribosomal protein S18 [Streptomy... 102 1e-20
gi|300791097|ref|YP_003771388.1| 30S ribosomal protein S18 [Amyc... 102 2e-20
gi|337767140|emb|CCB75851.1| ribosomal protein S18 [Streptomyces... 102 2e-20
gi|254391458|ref|ZP_05006660.1| 30S ribosomal protein S18 [Strep... 102 2e-20
>gi|15839432|ref|NP_334469.1| 30S ribosomal protein S18 [Mycobacterium tuberculosis CDC1551]
gi|31791232|ref|NP_853725.1| 30S ribosomal protein S18 [Mycobacterium bovis AF2122/97]
gi|57116686|ref|YP_177688.1| 30S ribosomal protein S18 [Mycobacterium tuberculosis H37Rv]
80 more sequence titles
Length=84
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIALAVKNAREVALLPFTSSVR
Sbjct 61 QRDIALAVKNAREVALLPFTSSVR 84
>gi|118615985|ref|YP_904317.1| 30S ribosomal protein S18 [Mycobacterium ulcerans Agy99]
gi|183980109|ref|YP_001848400.1| 30S ribosomal protein S18-1 RpsR1 [Mycobacterium marinum M]
gi|205556387|sp|B2HIB9.1|RS181_MYCMM RecName: Full=30S ribosomal protein S18 1
gi|205556430|sp|A0PKH7.1|RS181_MYCUA RecName: Full=30S ribosomal protein S18 1
gi|118568095|gb|ABL02846.1| 30S ribosomal protein S18-1 RpsR1 [Mycobacterium ulcerans Agy99]
gi|183173435|gb|ACC38545.1| 30S ribosomal protein S18-1 RpsR1 [Mycobacterium marinum M]
Length=84
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/84 (98%), Positives = 83/84 (99%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKS+KRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSNKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIALAVKNAREVALLPFTSS R
Sbjct 61 QRDIALAVKNAREVALLPFTSSAR 84
>gi|296167064|ref|ZP_06849476.1| 30S ribosomal protein S18 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897621|gb|EFG77215.1| 30S ribosomal protein S18 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=84
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/84 (96%), Positives = 82/84 (98%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKSSKRRPAPEKPVKTRKCVFCAK DQ+IDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSSKRRPAPEKPVKTRKCVFCAKNDQSIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKNAREVALLPFTSS R
Sbjct 61 QRDIAIAVKNAREVALLPFTSSAR 84
>gi|41406167|ref|NP_959003.1| 30S ribosomal protein S18 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466677|ref|YP_879375.1| 30S ribosomal protein S18 [Mycobacterium avium 104]
gi|254773122|ref|ZP_05214638.1| 30S ribosomal protein S18 [Mycobacterium avium subsp. avium ATCC
25291]
8 more sequence titles
Length=84
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/84 (96%), Positives = 82/84 (98%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKS+KRRPAPEKPVK RKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSNKRRPAPEKPVKARKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKNAREVALLPFTSS R
Sbjct 61 QRDIAIAVKNAREVALLPFTSSAR 84
>gi|240168786|ref|ZP_04747445.1| 30S ribosomal protein S18 [Mycobacterium kansasii ATCC 12478]
Length=84
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/84 (96%), Positives = 80/84 (96%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKSSKRRPAPEKPVK RKCVFCAKKDQ IDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSSKRRPAPEKPVKARKCVFCAKKDQKIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA AVKNAREVALLPFTSS R
Sbjct 61 QRDIATAVKNAREVALLPFTSSAR 84
>gi|118470101|ref|YP_891095.1| 30S ribosomal protein S18 [Mycobacterium smegmatis str. MC2 155]
gi|205556579|sp|A0R7F7.1|RS182_MYCS2 RecName: Full=30S ribosomal protein S18 2
gi|118171388|gb|ABK72284.1| ribosomal protein S18 [Mycobacterium smegmatis str. MC2 155]
Length=84
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/84 (92%), Positives = 80/84 (96%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKS+KRRPAPEKPVKTRKCVFC+KK Q IDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSNKRRPAPEKPVKTRKCVFCSKKGQTIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKNAREVALLPF SS R
Sbjct 61 QRDIAVAVKNAREVALLPFGSSTR 84
>gi|15828448|ref|NP_302711.1| 30S ribosomal protein S18 [Mycobacterium leprae TN]
gi|221230925|ref|YP_002504341.1| 30S ribosomal protein S18 [Mycobacterium leprae Br4923]
gi|6226084|sp|O53125.1|RS18_MYCLE RecName: Full=30S ribosomal protein S18
gi|254812949|sp|B8ZTL5.1|RS18_MYCLB RecName: Full=30S ribosomal protein S18
gi|2959410|emb|CAA17952.1| 30s ribosomal protein s18 [Mycobacterium leprae]
gi|13093878|emb|CAC32215.1| 30S ribosomal protein S18 [Mycobacterium leprae]
gi|219934032|emb|CAR72783.1| 30S ribosomal protein S18 [Mycobacterium leprae Br4923]
Length=84
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/84 (91%), Positives = 79/84 (95%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKS+KRRPAPEKP K RKCVFCAKK+Q IDYKDT LLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSTKRRPAPEKPAKARKCVFCAKKNQQIDYKDTTLLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKNAREVALLPFTSS R
Sbjct 61 QRDIAIAVKNAREVALLPFTSSAR 84
>gi|108802327|ref|YP_642524.1| 30S ribosomal protein S18 [Mycobacterium sp. MCS]
gi|119871480|ref|YP_941432.1| 30S ribosomal protein S18 [Mycobacterium sp. KMS]
gi|126438307|ref|YP_001073998.1| 30S ribosomal protein S18 [Mycobacterium sp. JLS]
6 more sequence titles
Length=84
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/84 (92%), Positives = 80/84 (96%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKS+KRRPAPEKPVKTRKCVFC+KK Q IDYKDTALLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSNKRRPAPEKPVKTRKCVFCSKKGQDIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKNAREVALLPF SS R
Sbjct 61 QRDIAVAVKNAREVALLPFGSSTR 84
>gi|333992946|ref|YP_004525560.1| 30S ribosomal protein S18-1 RpsR1 [Mycobacterium sp. JDM601]
gi|333488914|gb|AEF38306.1| 30S ribosomal protein S18-1 RpsR1 [Mycobacterium sp. JDM601]
Length=84
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/84 (90%), Positives = 79/84 (95%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAKS+KRRPAPEKP+KTRKC FC+ K Q IDYKDT+LLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKSNKRRPAPEKPIKTRKCAFCSNKKQEIDYKDTSLLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIALAVKNAREVALLPFTSS R
Sbjct 61 QRDIALAVKNAREVALLPFTSSAR 84
>gi|145221470|ref|YP_001132148.1| 30S ribosomal protein S18 [Mycobacterium gilvum PYR-GCK]
gi|315446778|ref|YP_004079657.1| 30S ribosomal protein S18P [Mycobacterium sp. Spyr1]
gi|205556373|sp|A4T4N9.1|RS181_MYCGI RecName: Full=30S ribosomal protein S18 1
gi|145213956|gb|ABP43360.1| SSU ribosomal protein S18P [Mycobacterium gilvum PYR-GCK]
gi|315265081|gb|ADU01823.1| SSU ribosomal protein S18P [Mycobacterium sp. Spyr1]
Length=88
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/88 (88%), Positives = 81/88 (93%), Gaps = 4/88 (4%)
Query 1 MAKSS--KRRPAPEKPVKTRKCVFCAKK--DQAIDYKDTALLRTYISERGKIRARRVTGN 56
MAKSS KRRPAPEKPVKTRKCVFC+KK +Q IDYKDT LLRTYISERGKIRARRVTGN
Sbjct 1 MAKSSSTKRRPAPEKPVKTRKCVFCSKKGKNQVIDYKDTQLLRTYISERGKIRARRVTGN 60
Query 57 CVQHQRDIALAVKNAREVALLPFTSSVR 84
CVQHQRDIA+AVKNAREVALLPF+SS R
Sbjct 61 CVQHQRDIAIAVKNAREVALLPFSSSTR 88
>gi|120406962|ref|YP_956791.1| 30S ribosomal protein S18 [Mycobacterium vanbaalenii PYR-1]
gi|205556618|sp|A1THY5.1|RS182_MYCVP RecName: Full=30S ribosomal protein S18 2
gi|119959780|gb|ABM16785.1| SSU ribosomal protein S18P [Mycobacterium vanbaalenii PYR-1]
Length=87
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/87 (89%), Positives = 81/87 (94%), Gaps = 3/87 (3%)
Query 1 MAKSS-KRRPAPEKPVKTRKCVFCAKK--DQAIDYKDTALLRTYISERGKIRARRVTGNC 57
MAKSS KRRPAPEKPVKTRKCVFC+KK +Q IDYKDT LLRTYISERGKIRARRVTGNC
Sbjct 1 MAKSSTKRRPAPEKPVKTRKCVFCSKKGKNQDIDYKDTQLLRTYISERGKIRARRVTGNC 60
Query 58 VQHQRDIALAVKNAREVALLPFTSSVR 84
VQHQRDIA+AVKNAREVALLPF+SS R
Sbjct 61 VQHQRDIAIAVKNAREVALLPFSSSTR 87
>gi|169631970|ref|YP_001705619.1| 30S ribosomal protein S18 [Mycobacterium abscessus ATCC 19977]
gi|169243937|emb|CAM64965.1| 30S ribosomal protein S18 [Mycobacterium abscessus]
Length=84
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/84 (86%), Positives = 77/84 (92%), Gaps = 0/84 (0%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK++KRRPAPEKPVKTRKC FC KK IDYKDT LLRTYISERGKIRARRVTGNCVQH
Sbjct 1 MAKTTKRRPAPEKPVKTRKCAFCTKKALNIDYKDTNLLRTYISERGKIRARRVTGNCVQH 60
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKNAREVALLPF+S+ R
Sbjct 61 QRDIAIAVKNAREVALLPFSSATR 84
>gi|262204542|ref|YP_003275750.1| 30S ribosomal protein S18 [Gordonia bronchialis DSM 43247]
gi|262087889|gb|ACY23857.1| ribosomal protein S18 [Gordonia bronchialis DSM 43247]
Length=85
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/85 (69%), Positives = 70/85 (83%), Gaps = 1/85 (1%)
Query 1 MAKS-SKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQ 59
MAK+ + R+P EK KT+ C FC K IDYKDTALLR ++S+RGKIR+RRVTGNCVQ
Sbjct 1 MAKAKASRKPRVEKVTKTKACSFCKDKKAVIDYKDTALLRRFLSDRGKIRSRRVTGNCVQ 60
Query 60 HQRDIALAVKNAREVALLPFTSSVR 84
HQRD+A+AVKN+REVALLPFTS+ R
Sbjct 61 HQRDVAVAVKNSREVALLPFTSTSR 85
>gi|296141832|ref|YP_003649075.1| 30S ribosomal protein S18 [Tsukamurella paurometabola DSM 20162]
gi|296029966|gb|ADG80736.1| ribosomal protein S18 [Tsukamurella paurometabola DSM 20162]
Length=85
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/83 (67%), Positives = 67/83 (81%), Gaps = 0/83 (0%)
Query 2 AKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQ 61
K + R+ EK VK + C FC +K+ IDYKDT LLR ++SERGKIR+RRVTGNCVQHQ
Sbjct 3 GKGNGRKVRVEKAVKAKACTFCKEKNIKIDYKDTTLLRRFLSERGKIRSRRVTGNCVQHQ 62
Query 62 RDIALAVKNAREVALLPFTSSVR 84
RD+A+AVKN+REVALLPFTS+ R
Sbjct 63 RDVAIAVKNSREVALLPFTSTTR 85
>gi|343928597|ref|ZP_08768042.1| 30S ribosomal protein S18 [Gordonia alkanivorans NBRC 16433]
gi|343761346|dbj|GAA14968.1| 30S ribosomal protein S18 [Gordonia alkanivorans NBRC 16433]
Length=85
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/85 (69%), Positives = 69/85 (82%), Gaps = 1/85 (1%)
Query 1 MAKSS-KRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQ 59
MAK+ R+P EK KT+ C FC K IDYKDTALLR ++S+RGKIR+RRVTGNCVQ
Sbjct 1 MAKAKPSRKPRVEKVTKTKACSFCKDKKADIDYKDTALLRRFLSDRGKIRSRRVTGNCVQ 60
Query 60 HQRDIALAVKNAREVALLPFTSSVR 84
HQRD+A+AVKN+REVALLPFTS+ R
Sbjct 61 HQRDVAVAVKNSREVALLPFTSTSR 85
>gi|312141932|ref|YP_004009268.1| 30S ribosomal protein s18 rpsr [Rhodococcus equi 103S]
gi|325672814|ref|ZP_08152508.1| 30S ribosomal protein S18 [Rhodococcus equi ATCC 33707]
gi|311891271|emb|CBH50592.1| 30S ribosomal protein S18 RpsR [Rhodococcus equi 103S]
gi|325556067|gb|EGD25735.1| 30S ribosomal protein S18 [Rhodococcus equi ATCC 33707]
Length=80
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/76 (70%), Positives = 64/76 (85%), Gaps = 0/76 (0%)
Query 9 PAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAV 68
P +K +K + C FC +K+ IDYKDTALLR Y+S+RGKIRARRVTGNCVQHQRDIA+AV
Sbjct 5 PLRDKVMKKKVCTFCKEKNTQIDYKDTALLRKYVSDRGKIRARRVTGNCVQHQRDIAVAV 64
Query 69 KNAREVALLPFTSSVR 84
KN+REVALLP+ S+ R
Sbjct 65 KNSREVALLPYVSTAR 80
>gi|119718879|ref|YP_925844.1| 30S ribosomal protein S18 [Nocardioides sp. JS614]
gi|166220965|sp|A1SQS2.1|RS18_NOCSJ RecName: Full=30S ribosomal protein S18
gi|119539540|gb|ABL84157.1| SSU ribosomal protein S18P [Nocardioides sp. JS614]
Length=78
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/84 (67%), Positives = 67/84 (80%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK+ R+P K + C FC +K +DYKDTALLR +IS+RGKIRARRVTGNCVQH
Sbjct 1 MAKAVIRKP------KKKVCQFCKEKATGVDYKDTALLRKFISDRGKIRARRVTGNCVQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A+AVKNAREVALLP+TS+ R
Sbjct 55 QRDVAIAVKNAREVALLPYTSTGR 78
>gi|326383849|ref|ZP_08205533.1| 30S ribosomal protein S18 [Gordonia neofelifaecis NRRL B-59395]
gi|326197308|gb|EGD54498.1| 30S ribosomal protein S18 [Gordonia neofelifaecis NRRL B-59395]
Length=74
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/73 (72%), Positives = 61/73 (84%), Gaps = 0/73 (0%)
Query 12 EKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNA 71
EK K + C FC K IDYKDTALLR ++S+RGKIR+RRVTGNCVQHQRD+A+AVKN+
Sbjct 2 EKVTKAKACTFCKDKKTVIDYKDTALLRRFLSDRGKIRSRRVTGNCVQHQRDVAVAVKNS 61
Query 72 REVALLPFTSSVR 84
REVALLPFTS+ R
Sbjct 62 REVALLPFTSTGR 74
>gi|312200937|ref|YP_004020998.1| ribosomal protein S18 [Frankia sp. EuI1c]
gi|311232273|gb|ADP85128.1| ribosomal protein S18 [Frankia sp. EuI1c]
Length=78
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/84 (65%), Positives = 68/84 (81%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK++ R+P K + CVFC K + IDYKDT+LLR +IS+RGKIRARRVTGNC QH
Sbjct 1 MAKAAVRKP------KKKVCVFCKDKTEYIDYKDTSLLRKFISDRGKIRARRVTGNCSQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A+AVKN+RE+ALLP+TS+ R
Sbjct 55 QRDVAIAVKNSREMALLPYTSTAR 78
>gi|336180314|ref|YP_004585689.1| 30S ribosomal protein S18 [Frankia symbiont of Datisca glomerata]
gi|334861294|gb|AEH11768.1| 30S ribosomal protein S18 [Frankia symbiont of Datisca glomerata]
Length=78
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/84 (66%), Positives = 67/84 (80%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK++ R+P K + CVFC K IDYKDT+LLR +IS+RGKIRARRVTGNC QH
Sbjct 1 MAKAAVRKP------KKKVCVFCKDKTDYIDYKDTSLLRKFISDRGKIRARRVTGNCSQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRDIA+AVKN+RE+ALLP+TS+ R
Sbjct 55 QRDIAIAVKNSREMALLPYTSTAR 78
>gi|134103769|ref|YP_001109430.1| 30S ribosomal protein S18 [Saccharopolyspora erythraea NRRL 2338]
gi|291007704|ref|ZP_06565677.1| 30S ribosomal protein S18 [Saccharopolyspora erythraea NRRL 2338]
gi|205556690|sp|A4FR30.1|RS182_SACEN RecName: Full=30S ribosomal protein S18 2
gi|133916392|emb|CAM06505.1| 30S ribosomal subunit protein S18 [Saccharopolyspora erythraea
NRRL 2338]
Length=79
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/85 (68%), Positives = 67/85 (79%), Gaps = 7/85 (8%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKD-QAIDYKDTALLRTYISERGKIRARRVTGNCVQ 59
MAK+ R+P K + CVFC K Q+IDYKDT LLR YIS+RGKIRARRVTGNC Q
Sbjct 1 MAKAPVRKP------KKKVCVFCKDKAAQSIDYKDTTLLRKYISDRGKIRARRVTGNCSQ 54
Query 60 HQRDIALAVKNAREVALLPFTSSVR 84
HQRD+A+AVKNARE+ALLP+TS+ R
Sbjct 55 HQRDVAIAVKNAREMALLPYTSTAR 79
>gi|296271508|ref|YP_003654140.1| 30S ribosomal protein S18 [Thermobispora bispora DSM 43833]
gi|296094295|gb|ADG90247.1| ribosomal protein S18 [Thermobispora bispora DSM 43833]
Length=78
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/84 (64%), Positives = 67/84 (80%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK++ R+P K + C+FC +K +DYKDTALLR +IS+RGKIRARRVTGNC QH
Sbjct 1 MAKTAVRKP------KKKVCLFCHEKISYVDYKDTALLRKFISDRGKIRARRVTGNCTQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A A+KNARE+ALLP+TS+ R
Sbjct 55 QRDVATAIKNAREMALLPYTSTSR 78
>gi|54027548|ref|YP_121790.1| 30S ribosomal protein S18 [Nocardia farcinica IFM 10152]
gi|59798928|sp|Q5YN15.1|RS181_NOCFA RecName: Full=30S ribosomal protein S18 1
gi|54019056|dbj|BAD60426.1| putative ribosomal protein S18 [Nocardia farcinica IFM 10152]
Length=83
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/79 (68%), Positives = 64/79 (82%), Gaps = 3/79 (3%)
Query 9 PAPEKPVKTRKCVFCAKK---DQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIA 65
PA EK +K + C FC + + +IDYKDT LLR Y+S+RGKIRARRVTGNCVQHQRDIA
Sbjct 5 PAREKVLKKKACTFCKESKSGNVSIDYKDTTLLRKYVSDRGKIRARRVTGNCVQHQRDIA 64
Query 66 LAVKNAREVALLPFTSSVR 84
+AVKN+REVALLP+ S+ R
Sbjct 65 VAVKNSREVALLPYVSTAR 83
>gi|324998552|ref|ZP_08119664.1| 30S ribosomal protein S18 [Pseudonocardia sp. P1]
Length=78
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/84 (66%), Positives = 65/84 (78%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK+ R+P K + C FC K Q IDYKDT LLR +IS+RGKIRARRVTGNC QH
Sbjct 1 MAKAIVRKP------KKKVCAFCKDKAQPIDYKDTGLLRKFISDRGKIRARRVTGNCRQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A+AVKN+REVALLP+TS+ R
Sbjct 55 QRDVAVAVKNSREVALLPYTSTAR 78
>gi|158319027|ref|YP_001511535.1| 30S ribosomal protein S18 [Frankia sp. EAN1pec]
gi|288921430|ref|ZP_06415708.1| ribosomal protein S18 [Frankia sp. EUN1f]
gi|229559985|sp|A8L8T2.1|RS18_FRASN RecName: Full=30S ribosomal protein S18
gi|158114432|gb|ABW16629.1| ribosomal protein S18 [Frankia sp. EAN1pec]
gi|288347164|gb|EFC81463.1| ribosomal protein S18 [Frankia sp. EUN1f]
Length=78
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/84 (65%), Positives = 66/84 (79%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK++ R+P K + CVFC K IDYKDT+LLR +IS+RGKIRARRVTGNC QH
Sbjct 1 MAKAAVRKP------KKKVCVFCKDKVHYIDYKDTSLLRKFISDRGKIRARRVTGNCSQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A AVKN+RE+ALLP+TS+ R
Sbjct 55 QRDVATAVKNSREMALLPYTSTAR 78
>gi|331700355|ref|YP_004336594.1| 30S ribosomal protein S18 [Pseudonocardia dioxanivorans CB1190]
gi|326955044|gb|AEA28741.1| 30S ribosomal protein S18 [Pseudonocardia dioxanivorans CB1190]
Length=78
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/77 (69%), Positives = 62/77 (81%), Gaps = 1/77 (1%)
Query 8 RPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALA 67
+P KP K + C FC K Q IDYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A+A
Sbjct 3 KPVLRKP-KKKVCAFCKDKAQEIDYKDTGLLRKFISDRGKIRARRVTGNCRQHQRDVAVA 61
Query 68 VKNAREVALLPFTSSVR 84
VKN+REVALLP+TS+ R
Sbjct 62 VKNSREVALLPYTSTAR 78
>gi|297563757|ref|YP_003682731.1| 30S ribosomal protein S18 [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296848205|gb|ADH70225.1| ribosomal protein S18 [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=78
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/65 (76%), Positives = 56/65 (87%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C+FC +K IDYKDT LLR +ISERGKIRARRVTGNC QHQRD+A A+KNAREVALLP+
Sbjct 14 CLFCQEKQSYIDYKDTTLLRKFISERGKIRARRVTGNCTQHQRDVATAIKNAREVALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|326329083|ref|ZP_08195412.1| ribosomal protein S18 [Nocardioidaceae bacterium Broad-1]
gi|325953165|gb|EGD45176.1| ribosomal protein S18 [Nocardioidaceae bacterium Broad-1]
Length=78
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/84 (65%), Positives = 65/84 (78%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK+ R+P K + C FC +K +DYKD LLR +IS+RGKIRARRVTGNCVQH
Sbjct 1 MAKAVIRKP------KKKVCQFCKEKATGVDYKDATLLRKFISDRGKIRARRVTGNCVQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A+AVKNAREVALLP+TS+ R
Sbjct 55 QRDVAIAVKNAREVALLPYTSTGR 78
>gi|111020419|ref|YP_703391.1| 30S ribosomal protein S18 [Rhodococcus jostii RHA1]
gi|226362637|ref|YP_002780415.1| 30S ribosomal protein S18 [Rhodococcus opacus B4]
gi|123340397|sp|Q0SB53.1|RS181_RHOSR RecName: Full=30S ribosomal protein S18 1
gi|110819949|gb|ABG95233.1| 30S ribosomal protein S18 [Rhodococcus jostii RHA1]
gi|226241122|dbj|BAH51470.1| 30S ribosomal protein S18 [Rhodococcus opacus B4]
Length=80
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/76 (65%), Positives = 63/76 (83%), Gaps = 0/76 (0%)
Query 9 PAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAV 68
P +K +K + C+FC +K+ I+YKDT LLR Y+S+RGKIRARRVTGNCVQHQRD+A+AV
Sbjct 5 PLRDKVMKKKICIFCKEKNTQINYKDTTLLRKYVSDRGKIRARRVTGNCVQHQRDVAIAV 64
Query 69 KNAREVALLPFTSSVR 84
KN+REVALLP+ + R
Sbjct 65 KNSREVALLPYATVAR 80
>gi|226309316|ref|YP_002769276.1| 30S ribosomal protein S18 [Rhodococcus erythropolis PR4]
gi|229489899|ref|ZP_04383754.1| ribosomal protein S18 [Rhodococcus erythropolis SK121]
gi|226188433|dbj|BAH36537.1| probable 30S ribosomal protein S18 [Rhodococcus erythropolis
PR4]
gi|229323195|gb|EEN88961.1| ribosomal protein S18 [Rhodococcus erythropolis SK121]
Length=80
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/76 (65%), Positives = 62/76 (82%), Gaps = 0/76 (0%)
Query 9 PAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAV 68
P +K +K + C FC +K+ I+YKDT LLR Y+S+RGKIRARRVTGNCVQHQRD+A+AV
Sbjct 5 PLRDKVMKKKVCTFCKEKNTQINYKDTTLLRKYVSDRGKIRARRVTGNCVQHQRDVAIAV 64
Query 69 KNAREVALLPFTSSVR 84
KN+REVALLP+ + R
Sbjct 65 KNSREVALLPYATVAR 80
>gi|271970520|ref|YP_003344716.1| 30S ribosomal protein S18 [Streptosporangium roseum DSM 43021]
gi|270513695|gb|ACZ91973.1| 30S ribosomal protein S18 [Streptosporangium roseum DSM 43021]
Length=78
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/77 (67%), Positives = 62/77 (81%), Gaps = 1/77 (1%)
Query 8 RPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALA 67
+PA KP K + C+FC K +DYKDTALLR +IS+RGKIRARRVTGNC QHQRD+A A
Sbjct 3 KPALRKP-KKKVCLFCHDKISYVDYKDTALLRKFISDRGKIRARRVTGNCTQHQRDVATA 61
Query 68 VKNAREVALLPFTSSVR 84
+KNARE+ALLP+ S+ R
Sbjct 62 IKNAREMALLPYMSTAR 78
>gi|86743195|ref|YP_483595.1| 30S ribosomal protein S18 [Frankia sp. CcI3]
gi|123723312|sp|Q2J4C6.1|RS18_FRASC RecName: Full=30S ribosomal protein S18
gi|86570057|gb|ABD13866.1| SSU ribosomal protein S18P [Frankia sp. CcI3]
Length=78
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/84 (64%), Positives = 66/84 (79%), Gaps = 6/84 (7%)
Query 1 MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH 60
MAK++ R+P K + CVFC K ID+KDT+LLR YIS+RGKIRARRV+GNC QH
Sbjct 1 MAKAAVRKP------KKKVCVFCKDKVDYIDFKDTSLLRKYISDRGKIRARRVSGNCSQH 54
Query 61 QRDIALAVKNAREVALLPFTSSVR 84
QRD+A AVKN+RE+ALLP+T+S R
Sbjct 55 QRDVATAVKNSREMALLPYTASAR 78
>gi|258655464|ref|YP_003204620.1| 30S ribosomal protein S18 [Nakamurella multipartita DSM 44233]
gi|258558689|gb|ACV81631.1| ribosomal protein S18 [Nakamurella multipartita DSM 44233]
Length=78
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/65 (77%), Positives = 55/65 (85%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C FC + Q IDYKDT LLR +IS+RGKIRARRVTGNC QHQRDIA AVKNAREVALLP+
Sbjct 14 CAFCKENAQPIDYKDTTLLRRFISDRGKIRARRVTGNCTQHQRDIATAVKNAREVALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|284034855|ref|YP_003384786.1| 30S ribosomal protein S18 [Kribbella flavida DSM 17836]
gi|283814148|gb|ADB35987.1| ribosomal protein S18 [Kribbella flavida DSM 17836]
Length=77
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/74 (71%), Positives = 60/74 (82%), Gaps = 4/74 (5%)
Query 11 PEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKN 70
P+K V C FC K +DYKDTALLR +IS+RGKIRARRVTGNCVQHQRD+A A+KN
Sbjct 8 PKKKV----CGFCKDKATYVDYKDTALLRKFISDRGKIRARRVTGNCVQHQRDVATAIKN 63
Query 71 AREVALLPFTSSVR 84
AREVALLP+TS+ R
Sbjct 64 AREVALLPYTSTAR 77
>gi|72163492|ref|YP_291149.1| 30S ribosomal protein S18 [Thermobifida fusca YX]
gi|123733431|sp|Q47K96.1|RS18_THEFY RecName: Full=30S ribosomal protein S18
gi|71917224|gb|AAZ57126.1| SSU ribosomal protein S18P [Thermobifida fusca YX]
Length=78
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/65 (76%), Positives = 56/65 (87%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
CVFC +K +DYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A AVKNARE+ALLP+
Sbjct 14 CVFCQEKMTYVDYKDTTLLRKFISDRGKIRARRVTGNCTQHQRDVAKAVKNAREMALLPY 73
Query 80 TSSVR 84
TSS R
Sbjct 74 TSSAR 78
>gi|269129130|ref|YP_003302500.1| 30S ribosomal protein S18 [Thermomonospora curvata DSM 43183]
gi|268314088|gb|ACZ00463.1| ribosomal protein S18 [Thermomonospora curvata DSM 43183]
Length=78
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/65 (73%), Positives = 56/65 (87%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
CVFC +K +DYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A A+KNARE+ALLP+
Sbjct 14 CVFCQEKISYVDYKDTGLLRKFISDRGKIRARRVTGNCTQHQRDVATAIKNAREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|311897277|dbj|BAJ29685.1| putative ribosomal protein S18 [Kitasatospora setae KM-6054]
Length=78
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/65 (74%), Positives = 55/65 (85%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
CVFC K +DYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A AVKN+REVALLP+
Sbjct 14 CVFCKDKATYVDYKDTNLLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREVALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTTR 78
>gi|182437465|ref|YP_001825184.1| 30S ribosomal protein S18 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239989158|ref|ZP_04709822.1| 30S ribosomal protein S18 [Streptomyces roseosporus NRRL 11379]
gi|291446163|ref|ZP_06585553.1| 30S ribosomal protein S18 1 [Streptomyces roseosporus NRRL 15998]
8 more sequence titles
Length=78
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/65 (71%), Positives = 55/65 (85%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C FC K Q +DYKDT +LR +IS+RGKIRARRVTGNC QHQRD+A AVKN+RE+ALLP+
Sbjct 14 CAFCKDKTQYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|111226184|ref|YP_716978.1| 30S ribosomal protein S18 [Frankia alni ACN14a]
gi|123043775|sp|Q0RAR6.1|RS182_FRAAA RecName: Full=30S ribosomal protein S18 2
gi|111153716|emb|CAJ65474.1| 30S ribosomal subunit protein S18 [Frankia alni ACN14a]
Length=73
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/69 (70%), Positives = 59/69 (86%), Gaps = 0/69 (0%)
Query 16 KTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVA 75
K + CVFC K + ID+KDT+LLR YIS+RGKIRARRV+GNC QHQRD+A AVKN+RE+A
Sbjct 5 KKKVCVFCKDKVEYIDFKDTSLLRKYISDRGKIRARRVSGNCSQHQRDVATAVKNSREMA 64
Query 76 LLPFTSSVR 84
LLP+T+S R
Sbjct 65 LLPYTASAR 73
>gi|256389565|ref|YP_003111129.1| 30S ribosomal protein S18 [Catenulispora acidiphila DSM 44928]
gi|256355791|gb|ACU69288.1| ribosomal protein S18 [Catenulispora acidiphila DSM 44928]
Length=78
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/75 (66%), Positives = 60/75 (80%), Gaps = 0/75 (0%)
Query 10 APEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVK 69
AP + K + C FC K +DYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A+AVK
Sbjct 4 APLRKPKKKVCGFCKDKVAYVDYKDTTLLRKFISDRGKIRARRVTGNCTQHQRDVAVAVK 63
Query 70 NAREVALLPFTSSVR 84
N+RE+ALLP+TS+ R
Sbjct 64 NSREMALLPYTSTTR 78
>gi|302543993|ref|ZP_07296335.1| ribosomal protein S18 [Streptomyces hygroscopicus ATCC 53653]
gi|345016421|ref|YP_004818775.1| 30S ribosomal protein S18 [Streptomyces violaceusniger Tu 4113]
gi|302461611|gb|EFL24704.1| ribosomal protein S18 [Streptomyces himastatinicus ATCC 53653]
gi|344042770|gb|AEM88495.1| 30S ribosomal protein S18 [Streptomyces violaceusniger Tu 4113]
Length=78
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/65 (73%), Positives = 56/65 (87%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
CVFC +K +DYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A AVKN+RE+ALLP+
Sbjct 14 CVFCKEKISYVDYKDTNLLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|256381019|ref|YP_003104679.1| 30S ribosomal protein S18 [Actinosynnema mirum DSM 43827]
gi|255925322|gb|ACU40833.1| ribosomal protein S18 [Actinosynnema mirum DSM 43827]
Length=79
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/66 (75%), Positives = 56/66 (85%), Gaps = 1/66 (1%)
Query 20 CVFCAKKD-QAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLP 78
C FC K+ IDYKDT LLR YIS+RGKIRARRVTGNC QHQRD+A+AVKNARE+ALLP
Sbjct 14 CAFCKDKNANLIDYKDTTLLRKYISDRGKIRARRVTGNCSQHQRDVAVAVKNAREMALLP 73
Query 79 FTSSVR 84
+TS+ R
Sbjct 74 YTSTAR 79
>gi|333922180|ref|YP_004495761.1| 30S ribosomal protein S18 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484401|gb|AEF42961.1| 30S ribosomal protein S18 [Amycolicicoccus subflavus DQS3-9A1]
Length=78
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/75 (62%), Positives = 60/75 (80%), Gaps = 0/75 (0%)
Query 10 APEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVK 69
A +P KT+ C FC + I+YKD+ +LR ++S+RGKIRARRVTGNCVQHQRD+A AVK
Sbjct 4 ALMRPAKTKVCAFCKATEAQINYKDSTMLRKFVSDRGKIRARRVTGNCVQHQRDVATAVK 63
Query 70 NAREVALLPFTSSVR 84
+RE+ALLP+TS+ R
Sbjct 64 VSREMALLPYTSTAR 78
>gi|295837785|ref|ZP_06824718.1| ribosomal protein S18 [Streptomyces sp. SPB74]
gi|302520485|ref|ZP_07272827.1| ribosomal protein S18 [Streptomyces sp. SPB78]
gi|318058998|ref|ZP_07977721.1| 30S ribosomal protein S18 [Streptomyces sp. SA3_actG]
gi|318075524|ref|ZP_07982856.1| 30S ribosomal protein S18 [Streptomyces sp. SA3_actF]
gi|197698943|gb|EDY45876.1| ribosomal protein S18 [Streptomyces sp. SPB74]
gi|302429380|gb|EFL01196.1| ribosomal protein S18 [Streptomyces sp. SPB78]
Length=78
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/65 (71%), Positives = 54/65 (84%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C FC K +DYKDT +LR YIS+RGKIRARRVTGNC QHQRD+A AVKN+RE+ALLP+
Sbjct 14 CAFCKDKVTYVDYKDTNMLRKYISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|257057878|ref|YP_003135710.1| 30S ribosomal protein S18P [Saccharomonospora viridis DSM 43017]
gi|256587750|gb|ACU98883.1| SSU ribosomal protein S18P [Saccharomonospora viridis DSM 43017]
Length=82
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/69 (72%), Positives = 57/69 (83%), Gaps = 4/69 (5%)
Query 20 CVFC----AKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVA 75
CVFC A + IDYKDT +LR YIS+RGKIRARRVTGNC QHQRDIA+AVKN+RE+A
Sbjct 14 CVFCKAEKAGHPEPIDYKDTNMLRKYISDRGKIRARRVTGNCSQHQRDIAIAVKNSREMA 73
Query 76 LLPFTSSVR 84
LLP+TS+ R
Sbjct 74 LLPYTSTAR 82
>gi|254384805|ref|ZP_05000142.1| 30S ribosomal protein S18 [Streptomyces sp. Mg1]
gi|297193324|ref|ZP_06910722.1| 30S ribosomal protein S18 1 [Streptomyces pristinaespiralis ATCC
25486]
gi|302535601|ref|ZP_07287943.1| ribosomal protein S18 [Streptomyces sp. C]
gi|194343687|gb|EDX24653.1| 30S ribosomal protein S18 [Streptomyces sp. Mg1]
gi|197718358|gb|EDY62266.1| 30S ribosomal protein S18 1 [Streptomyces pristinaespiralis ATCC
25486]
gi|302444496|gb|EFL16312.1| ribosomal protein S18 [Streptomyces sp. C]
gi|328883731|emb|CCA56970.1| SSU ribosomal protein S18p [Streptomyces venezuelae ATCC 10712]
Length=78
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/65 (70%), Positives = 54/65 (84%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C FC K +DYKDT +LR +IS+RGKIRARRVTGNC QHQRD+A AVKN+RE+ALLP+
Sbjct 14 CAFCKDKTAYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|302531300|ref|ZP_07283642.1| ribosomal protein S18 [Streptomyces sp. AA4]
gi|302440195|gb|EFL12011.1| ribosomal protein S18 [Streptomyces sp. AA4]
Length=82
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/69 (72%), Positives = 57/69 (83%), Gaps = 4/69 (5%)
Query 20 CVFCAKKD----QAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVA 75
CVFC + + IDYKDT LLR YIS+RGKIRARRVTGNC QHQRDIA+AVKN+RE+A
Sbjct 14 CVFCKAEKKGRPETIDYKDTNLLRKYISDRGKIRARRVTGNCSQHQRDIAIAVKNSREMA 73
Query 76 LLPFTSSVR 84
LLP+TS+ R
Sbjct 74 LLPYTSTAR 82
>gi|300791097|ref|YP_003771388.1| 30S ribosomal protein S18 [Amycolatopsis mediterranei U32]
gi|299800611|gb|ADJ50986.1| small subunit ribosomal protein S18 [Amycolatopsis mediterranei
U32]
gi|340532796|gb|AEK48001.1| 30S ribosomal protein S18 [Amycolatopsis mediterranei S699]
Length=82
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/69 (72%), Positives = 57/69 (83%), Gaps = 4/69 (5%)
Query 20 CVFCAKKDQA----IDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVA 75
CVFC + + IDYKDT LLR YIS+RGKIRARRVTGNC QHQRDIA+AVKN+RE+A
Sbjct 14 CVFCKAEKKGRPELIDYKDTNLLRKYISDRGKIRARRVTGNCSQHQRDIAIAVKNSREMA 73
Query 76 LLPFTSSVR 84
LLP+TS+ R
Sbjct 74 LLPYTSTAR 82
>gi|337767140|emb|CCB75851.1| ribosomal protein S18 [Streptomyces cattleya NRRL 8057]
Length=78
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/65 (71%), Positives = 54/65 (84%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C FC K +DYKDT LLR +IS+RGKIRARRVTGNC QHQRD+A AVKN+RE+ALLP+
Sbjct 14 CAFCKDKVTYVDYKDTNLLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
>gi|254391458|ref|ZP_05006660.1| 30S ribosomal protein S18 [Streptomyces clavuligerus ATCC 27064]
gi|294813711|ref|ZP_06772354.1| 30S ribosomal protein S18 2 [Streptomyces clavuligerus ATCC 27064]
gi|326442133|ref|ZP_08216867.1| 30S ribosomal protein S18 [Streptomyces clavuligerus ATCC 27064]
gi|197705147|gb|EDY50959.1| 30S ribosomal protein S18 [Streptomyces clavuligerus ATCC 27064]
gi|294326310|gb|EFG07953.1| 30S ribosomal protein S18 2 [Streptomyces clavuligerus ATCC 27064]
Length=78
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/65 (70%), Positives = 54/65 (84%), Gaps = 0/65 (0%)
Query 20 CVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPF 79
C FC K +DYKDT +LR +IS+RGKIRARRVTGNC QHQRD+A AVKN+RE+ALLP+
Sbjct 14 CAFCKDKTVYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPY 73
Query 80 TSSVR 84
TS+ R
Sbjct 74 TSTAR 78
Lambda K H
0.321 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131923386480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40