BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0061c

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839438|ref|NP_334475.1|  hypothetical protein MT0066.1 [Myco...   229    7e-59
gi|254233460|ref|ZP_04926786.1|  hypothetical protein TBCG_00060 ...   227    4e-58
gi|308232627|ref|ZP_07664136.1|  hypothetical protein TMAG_00731 ...   188    2e-46
gi|183983814|ref|YP_001852105.1|  hypothetical protein MMAR_3839 ...   148    2e-34
gi|118619016|ref|YP_907348.1|  hypothetical protein MUL_3771 [Myc...   146    8e-34
gi|183983815|ref|YP_001852106.1|  hypothetical protein MMAR_3840 ...   146    1e-33
gi|326905821|gb|EGE52754.1|  hypothetical protein TBPG_03787 [Myc...   135    2e-30
gi|240170091|ref|ZP_04748750.1|  hypothetical protein MkanA1_1231...   112    2e-23
gi|120404998|ref|YP_954827.1|  hypothetical protein Mvan_4044 [My...  73.9    8e-12
gi|31793488|ref|NP_855981.1|  glycine rich protein [Mycobacterium...  57.4    8e-07
gi|289754410|ref|ZP_06513788.1|  glycine rich protein [Mycobacter...  57.0    8e-07
gi|15841802|ref|NP_336839.1|  hypothetical protein MT2365.1 [Myco...  57.0    8e-07
gi|254387214|ref|ZP_05002480.1|  conserved hypothetical protein [...  35.8    2.0  
gi|224125880|ref|XP_002319698.1|  predicted protein [Populus tric...  34.3    5.8  
gi|342320551|gb|EGU12491.1|  Other/SCY1 protein kinase [Rhodotoru...  34.3    6.8  
gi|302534563|ref|ZP_07286905.1|  conserved hypothetical protein [...  33.9    7.8  


>gi|15839438|ref|NP_334475.1| hypothetical protein MT0066.1 [Mycobacterium tuberculosis CDC1551]
 gi|148821251|ref|YP_001286005.1| hypothetical protein TBFG_10060 [Mycobacterium tuberculosis F11]
 gi|253796976|ref|YP_003029977.1| hypothetical protein TBMG_00060 [Mycobacterium tuberculosis KZN 
1435]
 20 more sequence titles
 Length=126

 Score =  229 bits (585),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60
            MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK
Sbjct  15   MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  74

Query  61   YPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP  112
            YPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP
Sbjct  75   YPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP  126


>gi|254233460|ref|ZP_04926786.1| hypothetical protein TBCG_00060 [Mycobacterium tuberculosis C]
 gi|289445587|ref|ZP_06435331.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|124603253|gb|EAY61528.1| hypothetical protein TBCG_00060 [Mycobacterium tuberculosis C]
 gi|289418545|gb|EFD15746.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=112

 Score =  227 bits (579),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60
            MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK
Sbjct  1    MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60

Query  61   YPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP  112
            YPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP
Sbjct  61   YPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP  112


>gi|308232627|ref|ZP_07664136.1| hypothetical protein TMAG_00731 [Mycobacterium tuberculosis SUMu001]
 gi|308213493|gb|EFO72892.1| hypothetical protein TMAG_00731 [Mycobacterium tuberculosis SUMu001]
Length=93

 Score =  188 bits (478),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  20   VFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEKYPDGSFWHQWMQTWFTGPQ  79
            +FPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEKYPDGSFWHQWMQTWFTGPQ
Sbjct  1    MFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEKYPDGSFWHQWMQTWFTGPQ  60

Query  80   FYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP  112
            FYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP
Sbjct  61   FYFDCVSGGEPLPGPPPPGGCGGAIPSEQPNAP  93


>gi|183983814|ref|YP_001852105.1| hypothetical protein MMAR_3839 [Mycobacterium marinum M]
 gi|183177140|gb|ACC42250.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=114

 Score =  148 bits (374),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 67/85 (79%), Positives = 76/85 (90%), Gaps = 0/85 (0%)

Query  1   MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60
           M LK +RL  AILG  AAL+F  +VA+ADPPDPHQPDMTKGYCPGGRWG+G+LAVCDGEK
Sbjct  1   MMLKLSRLGAAILGGVAALMFSTAVATADPPDPHQPDMTKGYCPGGRWGWGELAVCDGEK  60

Query  61  YPDGSFWHQWMQTWFTGPQFYFDCV  85
           YPDGSFWHQWM+T+ TGPQFY+DCV
Sbjct  61  YPDGSFWHQWMRTYMTGPQFYYDCV  85


>gi|118619016|ref|YP_907348.1| hypothetical protein MUL_3771 [Mycobacterium ulcerans Agy99]
 gi|118571126|gb|ABL05877.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=136

 Score =  146 bits (369),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 66/85 (78%), Positives = 75/85 (89%), Gaps = 0/85 (0%)

Query  1    MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60
            M LK +RL  AILG  AAL+F  +VA+A PPDPHQPDMTKGYCPGGRWG+G+LAVCDGEK
Sbjct  17   MMLKLSRLGAAILGGVAALMFSTAVATAGPPDPHQPDMTKGYCPGGRWGWGELAVCDGEK  76

Query  61   YPDGSFWHQWMQTWFTGPQFYFDCV  85
            YPDGSFWHQWM+T+ TGPQFY+DCV
Sbjct  77   YPDGSFWHQWMRTYMTGPQFYYDCV  101


>gi|183983815|ref|YP_001852106.1| hypothetical protein MMAR_3840 [Mycobacterium marinum M]
 gi|183177141|gb|ACC42251.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=120

 Score =  146 bits (368),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 66/85 (78%), Positives = 75/85 (89%), Gaps = 0/85 (0%)

Query  1   MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60
           M LK +RL  AILG  AAL+F  +VA+A PPDPHQPDMTKGYCPGGRWG+G+LAVCDGEK
Sbjct  1   MMLKLSRLGAAILGGVAALMFSTAVATAGPPDPHQPDMTKGYCPGGRWGWGELAVCDGEK  60

Query  61  YPDGSFWHQWMQTWFTGPQFYFDCV  85
           YPDGSFWHQWM+T+ TGPQFY+DCV
Sbjct  61  YPDGSFWHQWMRTYMTGPQFYYDCV  85


>gi|326905821|gb|EGE52754.1| hypothetical protein TBPG_03787 [Mycobacterium tuberculosis W-148]
Length=66

 Score =  135 bits (339),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 66/66 (100%), Positives = 66/66 (100%), Gaps = 0/66 (0%)

Query  1   MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60
           MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK
Sbjct  1   MKLKFARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEK  60

Query  61  YPDGSF  66
           YPDGSF
Sbjct  61  YPDGSF  66


>gi|240170091|ref|ZP_04748750.1| hypothetical protein MkanA1_12311 [Mycobacterium kansasii ATCC 
12478]
Length=77

 Score =  112 bits (281),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 70/75 (94%), Gaps = 0/75 (0%)

Query  38   MTKGYCPGGRWGFGDLAVCDGEKYPDGSFWHQWMQTWFTGPQFYFDCVSGGEPLPGPPPP  97
            MT GYCPGGRWGFG+LAVCDGEKYPDGSFWHQWM+T+ TGPQ+Y+DCVSG EPLPGPPPP
Sbjct  1    MTMGYCPGGRWGFGELAVCDGEKYPDGSFWHQWMRTYMTGPQWYYDCVSGDEPLPGPPPP  60

Query  98   GGCGGAIPSEQPNAP  112
            GGC GAIP +QP+AP
Sbjct  61   GGCDGAIPPDQPDAP  75


>gi|120404998|ref|YP_954827.1| hypothetical protein Mvan_4044 [Mycobacterium vanbaalenii PYR-1]
 gi|119957816|gb|ABM14821.1| hypothetical protein Mvan_4044 [Mycobacterium vanbaalenii PYR-1]
Length=128

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 43/102 (43%), Positives = 59/102 (58%), Gaps = 5/102 (4%)

Query  6    ARLSTAILGCAAALVFPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEKYPDGS  65
            A+L  A+L   + ++    VA ADP    +P++  G CPGG  G   +A C+GEK+PDGS
Sbjct  29   AKLYVAVLVALSCVLAAPGVAEADPT--QKPNIATGDCPGGTGGILAVAWCNGEKFPDGS  86

Query  66   FWHQWMQT--WFTGPQFYFDCV-SGGEPLPGPPPPGGCGGAI  104
            +WH    T   F  P+F  +CV +   P   P PPGGCGGA+
Sbjct  87   YWHNVAMTGGTFATPRFEMNCVINDAFPSGTPAPPGGCGGAV  128


>gi|31793488|ref|NP_855981.1| glycine rich protein [Mycobacterium bovis AF2122/97]
 gi|57116965|ref|YP_177666.1| glycine rich protein [Mycobacterium tuberculosis H37Rv]
 gi|121638191|ref|YP_978415.1| hypothetical protein BCG_2326c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 49 more sequence titles
 Length=143

 Score = 57.4 bits (137),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 42/109 (39%), Positives = 54/109 (50%), Gaps = 8/109 (7%)

Query  2    KLKFARLSTAILGCAAALVFPASVASADPP-----DPHQPDMTKGYCPGGRWGFGDLAV-  55
            K+    ++ AI     A+ F    A+A+P      DPH P+   GYCPGG +G       
Sbjct  33   KMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWGY  92

Query  56   CDGEKYPDGSFWHQ-WMQTWFTGPQFYFDCV-SGGEPLPGPPPPGGCGG  102
            CDG +YPDGS+WHQ  +   F G      CV   G P+P    PG CGG
Sbjct  93   CDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDDGSPVPPLAAPGSCGG  141


>gi|289754410|ref|ZP_06513788.1| glycine rich protein [Mycobacterium tuberculosis EAS054]
 gi|289694997|gb|EFD62426.1| glycine rich protein [Mycobacterium tuberculosis EAS054]
Length=143

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 42/109 (39%), Positives = 54/109 (50%), Gaps = 8/109 (7%)

Query  2    KLKFARLSTAILGCAAALVFPASVASADPP-----DPHQPDMTKGYCPGGRWGFGDLAV-  55
            K+    ++ AI     A+ F    A+A+P      DPH P+   GYCPGG +G       
Sbjct  33   KMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWGY  92

Query  56   CDGEKYPDGSFWHQ-WMQTWFTGPQFYFDCV-SGGEPLPGPPPPGGCGG  102
            CDG +YPDGS+WHQ  +   F G      CV   G P+P    PG CGG
Sbjct  93   CDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDDGSPVPPLAAPGSCGG  141


>gi|15841802|ref|NP_336839.1| hypothetical protein MT2365.1 [Mycobacterium tuberculosis CDC1551]
 gi|13882064|gb|AAK46653.1| hypothetical protein MT2365.1 [Mycobacterium tuberculosis CDC1551]
Length=133

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 42/109 (39%), Positives = 54/109 (50%), Gaps = 8/109 (7%)

Query  2    KLKFARLSTAILGCAAALVFPASVASADPP-----DPHQPDMTKGYCPGGRWGFGDLAV-  55
            K+    ++ AI     A+ F    A+A+P      DPH P+   GYCPGG +G       
Sbjct  23   KMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWGY  82

Query  56   CDGEKYPDGSFWHQ-WMQTWFTGPQFYFDCV-SGGEPLPGPPPPGGCGG  102
            CDG +YPDGS+WHQ  +   F G      CV   G P+P    PG CGG
Sbjct  83   CDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDDGSPVPPLAAPGSCGG  131


>gi|254387214|ref|ZP_05002480.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194346025|gb|EDX26991.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=411

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 20/47 (43%), Positives = 22/47 (47%), Gaps = 8/47 (17%)

Query  62   PDGSFWHQWMQTWFTGPQFYFDCVSGG------EPLPGPPPPGGCGG  102
            PD   WH+W   W    Q   DCV  G      +PL   PPPGG GG
Sbjct  260  PDLFAWHKWKLGWLDASQV--DCVQSGSSLHTLQPLAEAPPPGGTGG  304


>gi|224125880|ref|XP_002319698.1| predicted protein [Populus trichocarpa]
 gi|222858074|gb|EEE95621.1| predicted protein [Populus trichocarpa]
Length=273

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 17/48 (36%), Positives = 23/48 (48%), Gaps = 4/48 (8%)

Query  21   FPASVASADPPDPHQPDMTKGYCPGGRWGFGDLAVCDGEKYPDGSFWH  68
            FP  V    P DP++P     YC   +  FGD+  CD E    G ++H
Sbjct  201  FPVPVEVEQPIDPNEP----TYCVCHQVSFGDMIACDNENCQGGEWFH  244


>gi|342320551|gb|EGU12491.1| Other/SCY1 protein kinase [Rhodotorula glutinis ATCC 204091]
Length=986

 Score = 34.3 bits (77),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 12/27 (45%), Positives = 14/27 (52%), Gaps = 0/27 (0%)

Query  42   YCPGGRWGFGDLAVCDGEKYPDGSFWH  68
              PGG W  G + VC     PDG+ WH
Sbjct  171  VTPGGEWKLGGMEVCSRLDEPDGAMWH  197


>gi|302534563|ref|ZP_07286905.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302443458|gb|EFL15274.1| conserved hypothetical protein [Streptomyces sp. C]
Length=413

 Score = 33.9 bits (76),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 20/47 (43%), Positives = 22/47 (47%), Gaps = 8/47 (17%)

Query  62   PDGSFWHQWMQTWFTGPQFYFDCVSGG------EPLPGPPPPGGCGG  102
            PD   WH+W   W    Q   DCV  G      +PL   PPPGG GG
Sbjct  262  PDLFAWHKWKLGWLDPAQV--DCVRSGTSLHTLQPLSQVPPPGGTGG  306



Lambda     K      H
   0.320    0.142    0.511 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128047486336




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40