BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0065
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycoba... 262 1e-68
gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651... 261 3e-68
gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [... 260 6e-68
gi|217979588|ref|YP_002363735.1| PilT protein domain-containing ... 89.7 1e-16
gi|284992100|ref|YP_003410654.1| PilT protein domain-containing ... 87.4 7e-16
gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus ... 83.2 1e-14
gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355... 82.8 2e-14
gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [... 78.6 3e-13
gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia ... 78.6 3e-13
gi|297625029|ref|YP_003706463.1| PilT domain-containing protein ... 75.9 2e-12
gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_179... 75.1 3e-12
gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161... 73.2 1e-11
gi|336178825|ref|YP_004584200.1| PilT protein domain-containing ... 70.9 6e-11
gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, c... 69.3 2e-10
gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [The... 68.6 3e-10
gi|145225776|ref|YP_001136454.1| PilT domain-containing protein ... 68.6 3e-10
gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycob... 68.2 4e-10
gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycoba... 67.8 5e-10
gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-... 67.8 5e-10
gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [... 67.8 6e-10
gi|333025632|ref|ZP_08453696.1| putative PilT protein-like prote... 67.0 1e-09
gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641... 66.6 1e-09
gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311... 66.6 1e-09
gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 ... 66.2 1e-09
gi|336177502|ref|YP_004582877.1| PilT protein domain-containing ... 65.5 2e-09
gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-... 63.9 7e-09
gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_1670... 63.9 7e-09
gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propi... 62.0 3e-08
gi|271964589|ref|YP_003338785.1| PilT protein domain-containing ... 61.6 4e-08
gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin compon... 61.2 5e-08
gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin compon... 60.5 8e-08
gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin co... 60.1 1e-07
gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin co... 60.1 1e-07
gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Fr... 60.1 1e-07
gi|336179019|ref|YP_004584394.1| PilT protein domain-containing ... 59.3 2e-07
gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin compon... 58.5 3e-07
gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin compon... 57.4 7e-07
gi|269957933|ref|YP_003327722.1| PilT protein domain-containing ... 57.0 1e-06
gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Stre... 56.2 1e-06
gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Fra... 55.8 2e-06
gi|284992067|ref|YP_003410621.1| PilT domain-containing protein ... 54.7 5e-06
gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kit... 52.8 2e-05
gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycob... 52.4 2e-05
gi|256371478|ref|YP_003109302.1| PilT protein domain-containing ... 52.4 2e-05
gi|154246134|ref|YP_001417092.1| PilT domain-containing protein ... 51.6 4e-05
gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_1022... 50.8 6e-05
gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [J... 50.1 1e-04
gi|336117185|ref|YP_004571952.1| hypothetical protein MLP_15350 ... 50.1 1e-04
gi|146303983|ref|YP_001191299.1| PilT domain-containing protein ... 49.7 2e-04
gi|333989975|ref|YP_004522589.1| PilT protein domain-containing ... 48.5 3e-04
>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=133
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 VDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE 60
+DECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE
Sbjct 1 MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE 60
Query 61 QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA
Sbjct 61 QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
Query 121 AAPGLPCEIKLVR 133
AAPGLPCEIKLVR
Sbjct 121 AAPGLPCEIKLVR 133
>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT
140010059]
gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)
Query 1 VDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE 60
+DECVVDAAA VDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE
Sbjct 1 MDECVVDAAAAVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE 60
Query 61 QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA
Sbjct 61 QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
Query 121 AAPGLPCEIKLVR 133
AAPGLPCEIKLVR
Sbjct 121 AAPGLPCEIKLVR 133
>gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289688362|gb|EFD55850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=133
Score = 260 bits (664), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)
Query 1 VDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE 60
+DECVVDAAAVVDALAGKGASAIVLRGLLKE ISNAPHLLDAEVGHALRRAVLSDEISEE
Sbjct 1 MDECVVDAAAVVDALAGKGASAIVLRGLLKEPISNAPHLLDAEVGHALRRAVLSDEISEE 60
Query 61 QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA
Sbjct 61 QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
Query 121 AAPGLPCEIKLVR 133
AAPGLPCEIKLVR
Sbjct 121 AAPGLPCEIKLVR 133
>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris
BL2]
gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/130 (48%), Positives = 76/130 (59%), Gaps = 2/130 (1%)
Query 4 CVVDAAAVVDALAGKGASAIVLRGLLKESIS-NAPHLLDAEVGHALRRAVLSDEISEEQA 62
VVDA+A+++AL ++ V L + +APHLLD EV +RR LS EI +
Sbjct 2 IVVDASALLEALLRTPSAKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRARG 61
Query 63 RAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA 122
AL L L RYPH L+ W LR+N+T YDA YVALA ALD PLLT D RLAAA
Sbjct 62 GLALADLADLPLRRYPHD-FLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA 120
Query 123 PGLPCEIKLV 132
G I+LV
Sbjct 121 AGHRARIELV 130
>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/128 (44%), Positives = 76/128 (60%), Gaps = 1/128 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ VV AL G R ++ ++APHLLD EV A+RR LSD + + AR
Sbjct 3 VVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAARD 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
A+ A+ L R+ H L++ QLR ++T YD +YVALA L L+TGD RL+ APG
Sbjct 63 AVTAMRDLPVIRHGHDL-LLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAPG 121
Query 125 LPCEIKLV 132
L C + +V
Sbjct 122 LRCPVSVV 129
>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/99 (47%), Positives = 63/99 (64%), Gaps = 1/99 (1%)
Query 35 NAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNV 94
AP ++D EV LRRA S + + +A A + L L R H P L+ W+LRH V
Sbjct 3 TAPEVIDLEVASVLRRAAASGRLPDRRADLAWNDLIDLPLRRAGHRP-LLRRCWELRHTV 61
Query 95 TFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR 133
T YDA YVALA ALD+ L+T D+RL+ APG+ CE++++R
Sbjct 62 TSYDAAYVALAEALDIVLVTADARLSRAPGITCEVEVLR 100
>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/128 (48%), Positives = 80/128 (63%), Gaps = 5/128 (3%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ +VDAL +GA+ R L E+ AP L+DAE+ LRR VL+D+++E+ A
Sbjct 3 VVDASVLVDALLIQGAA----RDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHALQ 58
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
AL L R+ S L W+LR N+T YDALYVALA L LLTGDSR A APG
Sbjct 59 ALATAQRLGLRRHV-SRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARAPG 117
Query 125 LPCEIKLV 132
L C ++++
Sbjct 118 LRCHVEVM 125
>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/128 (40%), Positives = 72/128 (57%), Gaps = 1/128 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + AL + + R L + AP L+D EV RR V + + +A +
Sbjct 30 VVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAKRMPARRAAS 89
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
A+ L L R H P L+ W+L+H +T YDA YVALA ALD+ L+T D+RL+ A G
Sbjct 90 AVADLTNLPLRRSSHQP-LLHRVWELQHVLTAYDAAYVALAEALDIVLVTADARLSRASG 148
Query 125 LPCEIKLV 132
CEI++V
Sbjct 149 THCEIEVV 156
>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/126 (38%), Positives = 69/126 (55%), Gaps = 1/126 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
V+D +A+V+ L G A V+R L APH +D E LR ++ E +A
Sbjct 3 VLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEASR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
AL+ L + RY H+P L+ W+LRHN+ YDA Y+ALA L+ L+T + +L PG
Sbjct 63 ALELLGRMNLRRYGHAP-LLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDRVPG 121
Query 125 LPCEIK 130
L C ++
Sbjct 122 LRCTVR 127
>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/121 (44%), Positives = 68/121 (57%), Gaps = 2/121 (1%)
Query 5 VVDAAAVVDALAG-KGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQAR 63
V+DA+A V L + A A + +L+ + P L D EV HALRR IS +A
Sbjct 3 VLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPARAE 62
Query 64 AALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAP 123
A L L R+PH P L E W+LR N++ YDA YVALA L+ PL+T D+RL AP
Sbjct 63 RAFARLRELRCERHPHVP-LAERVWELRANLSAYDATYVALAEILEAPLITLDARLGRAP 121
Query 124 G 124
G
Sbjct 122 G 122
>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/127 (45%), Positives = 71/127 (56%), Gaps = 1/127 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDAAA+VDAL G + LR L + +AP LLD EV ALR ++S +A
Sbjct 3 VVDAAALVDALTGVDGTD-ELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAHD 61
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
AL L R+P S L + LR N+T YDA YVALA AL+ +LT D RLA + G
Sbjct 62 ALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARSGG 121
Query 125 LPCEIKL 131
EI++
Sbjct 122 HSVEIRV 128
>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/128 (44%), Positives = 76/128 (60%), Gaps = 5/128 (3%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ +VDAL GA+ R L E+ AP L+DAE+ LRR VL++ + E+ A
Sbjct 3 VVDASVLVDALLLDGAA----RARLAEANLQAPELIDAELLSVLRRLVLAERLGEQHALQ 58
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
AL A + R S L W+LR N++ YDA+YVALA L LLT D+R A APG
Sbjct 59 AL-ATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARAPG 117
Query 125 LPCEIKLV 132
L C ++++
Sbjct 118 LRCPVEVL 125
>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/132 (35%), Positives = 68/132 (52%), Gaps = 7/132 (5%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVD + V+D L+ + ++ + L +APH LD EV +R +I++ +
Sbjct 6 VVDCSLVIDVLSVRNGDEVLRQRLSAPRTLHAPHHLDVEVASTVRGLAAGKKITDHRGEQ 65
Query 65 ALDALPYLIDNR---YPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAA 121
L L R +P+ PRL W+LRHN+ YDA Y+ALA AL LLTGD+++
Sbjct 66 MLADYARLRITRHPVWPYHPRL----WELRHNLGAYDAAYIALAEALGCELLTGDTKIKN 121
Query 122 APGLPCEIKLVR 133
A G + + R
Sbjct 122 AAGHRATVIVTR 133
>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
Length=133
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/128 (43%), Positives = 72/128 (57%), Gaps = 1/128 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + AL GA + R L AP L+D EV RR V + ++ +A A
Sbjct 3 VVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRADA 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
A+ L L R H P L+E W LR VT YDA Y ALA AL+V L+T D RLA APG
Sbjct 63 AVSDLADLPLRRCSHRP-LLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARAPG 121
Query 125 LPCEIKLV 132
L C+++++
Sbjct 122 LACDVEVI 129
>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/94 (48%), Positives = 56/94 (60%), Gaps = 1/94 (1%)
Query 36 APHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVT 95
AP LLDAEV +R+A LS +S +A+ AL+ L R H P L+ + LR +T
Sbjct 35 APALLDAEVLAVVRKATLSGRLSPTRAQEALEDLFSWPLFRVDHGPLLLP-AFALRDRLT 93
Query 96 FYDALYVALATALDVPLLTGDSRLAAAPGLPCEI 129
YDALYVALA L P+LT D LA APGLP +
Sbjct 94 AYDALYVALAQRLSAPILTADGPLARAPGLPVPL 127
>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/128 (43%), Positives = 71/128 (56%), Gaps = 1/128 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + AL GA R L AP L+D EV RR V + ++ +A A
Sbjct 25 VVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRADA 84
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
+ L L R H P L+E W LR VT YDA Y ALA AL+V L+T D+RLA APG
Sbjct 85 GVSDLEDLPLRRCSHRP-LLERIWALRRTVTPYDAAYAALAEALEVVLVTADARLARAPG 143
Query 125 LPCEIKLV 132
L C+++++
Sbjct 144 LACDVEVI 151
>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=129
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/128 (40%), Positives = 69/128 (54%), Gaps = 2/128 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
V+DA+A V+ + A A V R L E++ +AP D EV A+R+AV+ IS+ +
Sbjct 3 VLDASAAVELMLTTPAGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
+ L R+P P + +QLR T D YVALA L VPL+T D RLA + G
Sbjct 62 VVVNFLSLPVRRWPLKP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
Query 125 LPCEIKLV 132
EI+LV
Sbjct 121 HNAEIELV 128
>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=127
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 26 RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
R L+ + PHL+D+E+ LRR D + R AL L RYP L E
Sbjct 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE 78
Query 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
W++R N++ YDA YVALA AL+ L+T D RL+ C I +V
Sbjct 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/128 (40%), Positives = 68/128 (54%), Gaps = 2/128 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
V+DA+A V+ + A A V R L E++ AP D EV A+R+AV+ IS+ +
Sbjct 3 VLDASAAVELMLTTPAGAAVARRLRGETV-RAPAHFDVEVIGAIRQAVVRQLISDHEGLV 61
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
+ L R+P P + +QLR T D YVALA L VPL+T D RLA + G
Sbjct 62 VVVNFLSLPVRRWPLKP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
Query 125 LPCEIKLV 132
EI+LV
Sbjct 121 HNAEIELV 128
>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 26 RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
R L+ + PHL+D+E+ LRR D + R AL L RYP L E
Sbjct 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWALQTWRRLAVTRYPVVG-LFE 78
Query 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
W++R N++ YDA YVALA AL+ L+T D RL+ C I +V
Sbjct 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/97 (41%), Positives = 52/97 (54%), Gaps = 1/97 (1%)
Query 36 APHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVT 95
AP L+D E + R + + +I+E A A+ LP R H L W+LRHN +
Sbjct 6 APALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFR-VWELRHNYS 64
Query 96 FYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
YDA YVALA L LLTGD+RL G C ++L+
Sbjct 65 PYDASYVALAEQLGATLLTGDARLQRGTGKRCPVELI 101
>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT
140010059]
gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 26 RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
R L+ + PHL+D+E+ LRR V D + AL L RYP L E
Sbjct 20 RQLIAAERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRALQTWRRLAVTRYPVVG-LFE 78
Query 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
W++R N++ YDA YVALA AL+ L+T D RL+ C I +V
Sbjct 79 RIWEIRANLSAYDASYVALAEALNCELVTADLRLSNTGQARCPITVV 125
>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT
140010059]
gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/128 (39%), Positives = 68/128 (54%), Gaps = 2/128 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
V+DA+A V+ + A A V R L E++ +AP D EV A+ +AV+ IS+ +
Sbjct 3 VLDASAAVELMLATPAGAAVARRLRGETV-HAPAHFDVEVIGAIHQAVVRQLISDHEGLV 61
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
+ L R+P P + +QLR T D YVALA L VPL+T D RLA + G
Sbjct 62 VVVNFLSLPVRRWPLKP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG 120
Query 125 LPCEIKLV 132
EI+LV
Sbjct 121 HTAEIELV 128
>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/126 (42%), Positives = 68/126 (54%), Gaps = 9/126 (7%)
Query 11 VVDALAGKGASAIVLRG-LLKESISNA-PHLLDAEVGHALRRAVLSDEISEEQARAALD- 67
V+ AL + S R LLK+ A P LL EV A+RR E++ +A AA++
Sbjct 2 VIAALVDENRSGAWARSRLLKDKDKTAVPDLLYLEVASAVRRLEQRGELTARRAAAAMED 61
Query 68 --ALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGL 125
ALP + PR W+LRHN+T YDA YV LA + PL+T D RLAAA G
Sbjct 62 LMALPLQVARLRTLLPR----CWELRHNLTPYDAAYVTLAEFSESPLVTADRRLAAAAGP 117
Query 126 PCEIKL 131
C+I+L
Sbjct 118 RCKIEL 123
>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 73/132 (56%), Gaps = 8/132 (6%)
Query 5 VVDAAAVVDALA---GKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQ 61
VVDA+ + +AL +G A V G ++ AP EV + L +ISEE+
Sbjct 3 VVDASVLANALVYADERGQRARVALG--HDTEWAAPEHWMVEVFSVMHGLTLGKKISEER 60
Query 62 ARAALDALPYL-IDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
AR+A+ LP+L +D + L+ WQLR ++ YDA YVALA A D+ L+T DSRLA
Sbjct 61 ARSAIARLPHLGVD--HVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLA 118
Query 121 AAPGLPCEIKLV 132
A C ++LV
Sbjct 119 RAAMPFCAVRLV 130
>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/129 (42%), Positives = 72/129 (56%), Gaps = 2/129 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRG-LLKESISNAPHLLDAEVGHALRRAVLSDEISEEQAR 63
VVDA+ + DAL G R L + AP L EV +R VL ++ +A+
Sbjct 8 VVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLARAQ 67
Query 64 AALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAP 123
A+D LP L+ + + L++ WQLR NVT YDA Y+A A L PL+TGD RLA A
Sbjct 68 EAIDTLPSLVIDEVGVAT-LLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKAN 126
Query 124 GLPCEIKLV 132
G+ CEI+L+
Sbjct 127 GVRCEIRLL 135
>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC
12478]
Length=129
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/128 (39%), Positives = 69/128 (54%), Gaps = 2/128 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
V+DA+A V+ + A V R L E++ +AP +D EV A+RRAV+ IS+ +
Sbjct 3 VLDASAAVELVLATPPGAAVARRLRDETV-HAPAHIDVEVIGAIRRAVVRRLISDHEGVV 61
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
A+ L R+P P + +QLR DA+YVALA V L+T D RLA + G
Sbjct 62 AVADFLSLQIRRWPIKP-FAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQSHG 120
Query 125 LPCEIKLV 132
EI+LV
Sbjct 121 HDAEIELV 128
>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA1]
gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes
6609]
Length=129
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/115 (37%), Positives = 57/115 (50%), Gaps = 2/115 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + + L G + E AP L AE+ H +R L I++ +A
Sbjct 4 VVDASVLAEMLVGSTVGRAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
L YP P +++ W++RHNV+ YDALYV LA L V LLT D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL 116
>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum
DSM 43021]
gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/131 (39%), Positives = 72/131 (55%), Gaps = 9/131 (6%)
Query 4 CVVDAAAVVDALAG-KGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDE----IS 58
VVDA+ V LA KG +LR L + +AP L+D E+ +R V++ + IS
Sbjct 3 LVVDASIVFRLLANVKGDD--LLRQRLARKV-HAPALIDVEIASVVRGHVVTGKPEVRIS 59
Query 59 EEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSR 118
E +A+ L+ L R+P P L +LR+N+T YD +YVALA L VP+LT D++
Sbjct 60 EARAQIMLERYAQLKIVRHPMLP-LQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAK 118
Query 119 LAAAPGLPCEI 129
A + G EI
Sbjct 119 FAGSTGHRTEI 129
>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL056PA1]
Length=129
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/115 (37%), Positives = 57/115 (50%), Gaps = 2/115 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + + L G + E AP L AE+ H +R L I++ +A
Sbjct 4 VVDASVLAEMLVGSTVGHAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
L L YP P +++ W++RHNV+ YDALYV LA L LLT D RL
Sbjct 63 ILSDFRALKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA2]
gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA3]
gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA4]
gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL060PA1]
gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL103PA1]
Length=129
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 2/115 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + + L G + E HLL AE+ H +R L I++ +A
Sbjct 4 VVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLL-AEIAHVVRNLSLGHLITDAEAMR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
L YP P +++ W++RHNV+ YDALYV LA L LLT D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
7 more sequence titles
gi|282581983|gb|EFB87366.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|313813817|gb|EFS51531.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA1]
gi|314924524|gb|EFS88355.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL001PA1]
gi|315102935|gb|EFT74911.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA2]
gi|327335217|gb|EGE76927.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL097PA1]
gi|333766217|gb|EGL43529.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|340768857|gb|EGR91382.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
Length=129
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 2/115 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + + L G + E AP L AE+ H +R L I++ +A
Sbjct 4 VVDASVLAEMLVGSTVGRAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
L YP P +++ W++RHNV+ YDALYV LA L LLT D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
55 more sequence titles
gi|289153552|gb|EFD02266.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289158831|gb|EFD07031.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|291376345|gb|ADE00200.1| PIN domain protein [Propionibacterium acnes SK137]
gi|313763711|gb|EFS35075.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA1]
gi|313771728|gb|EFS37694.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL074PA1]
gi|313793743|gb|EFS41774.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA1]
gi|313803055|gb|EFS44263.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA2]
gi|313808461|gb|EFS46928.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA2]
gi|313810550|gb|EFS48264.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA1]
gi|313816972|gb|EFS54686.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA1]
gi|313818114|gb|EFS55828.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA2]
gi|313820974|gb|EFS58688.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA1]
gi|313823954|gb|EFS61668.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA2]
gi|313829774|gb|EFS67488.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA2]
gi|313831592|gb|EFS69306.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL007PA1]
gi|313839318|gb|EFS77032.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL086PA1]
gi|314916534|gb|EFS80365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA4]
gi|314918808|gb|EFS82639.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA1]
gi|314921013|gb|EFS84844.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA3]
gi|314926999|gb|EFS90830.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA3]
gi|314932415|gb|EFS96246.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL067PA1]
gi|314956724|gb|EFT00976.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA1]
gi|314959635|gb|EFT03737.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA1]
gi|314961820|gb|EFT05921.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA2]
gi|314964805|gb|EFT08905.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA1]
gi|314968688|gb|EFT12786.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL037PA1]
gi|314974943|gb|EFT19038.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA1]
gi|314977963|gb|EFT22057.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL045PA1]
gi|314979647|gb|EFT23741.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA2]
gi|314984627|gb|EFT28719.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA1]
gi|314988284|gb|EFT32375.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA2]
gi|314990373|gb|EFT34464.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA3]
gi|315079229|gb|EFT51232.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA2]
gi|315082308|gb|EFT54284.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL078PA1]
gi|315083723|gb|EFT55699.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA2]
gi|315087362|gb|EFT59338.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA3]
gi|315089779|gb|EFT61755.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA1]
gi|315095553|gb|EFT67529.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL038PA1]
gi|315100186|gb|EFT72162.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA2]
gi|315102508|gb|EFT74484.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA1]
gi|315109573|gb|EFT81549.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA2]
gi|327326558|gb|EGE68346.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA3]
gi|327332823|gb|EGE74555.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA2]
gi|327447647|gb|EGE94301.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA2]
gi|327448521|gb|EGE95175.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA1]
gi|327449624|gb|EGE96278.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA2]
gi|327455832|gb|EGF02487.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA3]
gi|327456075|gb|EGF02730.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL092PA1]
gi|327457983|gb|EGF04638.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA2]
gi|328757147|gb|EGF70763.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA1]
gi|328757341|gb|EGF70957.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL020PA1]
gi|328757527|gb|EGF71143.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA2]
gi|328762101|gb|EGF75606.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL099PA1]
gi|332676453|gb|AEE73269.1| hypothetical protein PAZ_c21460 [Propionibacterium acnes 266]
gi|340774022|gb|EGR96512.1| PIN domain protein [Propionibacterium acnes SK182]
Length=129
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 2/115 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + + L G + E AP L AE+ H +R L I++ +A
Sbjct 4 VVDASVLAEMLVGSTVGHAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
L YP P +++ W++RHNV+ YDALYV LA L LLT D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 66/125 (53%), Gaps = 1/125 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
V+DA+A V L G + + ++ + AP L+ E + LRR +L+ + +A
Sbjct 10 VLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEATL 69
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG 124
A L + R ++ L + W LR N+T YDA YVALA AL PL+T D+RL A G
Sbjct 70 AHADLLAMPVRRLAYA-SLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRASG 128
Query 125 LPCEI 129
CE+
Sbjct 129 PRCEV 133
>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/129 (35%), Positives = 73/129 (57%), Gaps = 4/129 (3%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLK--ESISNAPHLLDAEVGHALRRAVLSDEISEEQA 62
V+D +A+V L +GA + +R L ES++ AP LLD E+ AL + ++I++ +
Sbjct 7 VIDCSALVRTLTDQGAGGVAVRRRLAGLESLA-APGLLDYEIVSALFGMLRGNKITKRET 65
Query 63 RAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA 122
A+ L R+ + L +L HN++ YDA YVALA AL +PL+T D+R+A +
Sbjct 66 TKAVADYQILPLVRH-ETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARS 124
Query 123 PGLPCEIKL 131
C +++
Sbjct 125 GTAACAVEV 133
>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA2]
gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL044PA1]
gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA3]
gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
humerusii P08]
Length=197
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 45/84 (54%), Gaps = 1/84 (1%)
Query 36 APHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVT 95
AP L AE+ H +R L I++ +A L YP P +++ W++RHNV+
Sbjct 34 APQHLSAEIAHVVRNLSLGQLITDAEAMQILSDFRAFKVELYPVEPLMVD-AWEMRHNVS 92
Query 96 FYDALYVALATALDVPLLTGDSRL 119
YDALYV LA L LLT D RL
Sbjct 93 AYDALYVVLARLLGACLLTRDHRL 116
>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA1]
Length=129
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/115 (35%), Positives = 55/115 (48%), Gaps = 2/115 (1%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+ + + L G + E AP L AE+ H +R I++ +A
Sbjct 4 VVDASVLAEMLVGSTVGHAAWQQWGGEEFI-APQHLPAEIAHVVRNLSSGHLITDAEAMR 62
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
L YP P +++ W++RHNV+ YDALYV LA L LLT D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|269957933|ref|YP_003327722.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269306614|gb|ACZ32164.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM
15894]
Length=138
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/131 (39%), Positives = 70/131 (54%), Gaps = 4/131 (3%)
Query 5 VVDAAAVVDALAGKGASAIVLRGL-LKESISNAPHLLDAEVGHALRRAVLSDEISEEQAR 63
VVDA+A+ + L A + L + + PHL E LR VL ++ E+A
Sbjct 6 VVDASALAEYLVSSAAGQAIGEELRAHDGALHVPHLAVVETVSVLRGLVLGGFLTAERAA 65
Query 64 AALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA--A 121
AAL L L R+P P L+ W+LR N++ YDA YVALA ALD ++T D+RLA A
Sbjct 66 AALADLADLPAERWPSEP-LLPRIWELRSNLSAYDATYVALAEALDADVVTRDARLARGA 124
Query 122 APGLPCEIKLV 132
C +++V
Sbjct 125 QTVSRCTVRVV 135
>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis
BCW-1]
Length=139
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/132 (35%), Positives = 72/132 (55%), Gaps = 7/132 (5%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLL-KESISNAPHLLDAEV-----GHALRRAVLSDEIS 58
VVD +A++ L+ +G + ++R + KE APHL+D E+ G A R ++S
Sbjct 3 VVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPKLS 62
Query 59 EEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSR 118
E+Q R A+ L +R+ + L E L N++ YDA YVALA L +PL+T D+R
Sbjct 63 EKQLRKAVATYRDLAIDRH-ETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSDAR 121
Query 119 LAAAPGLPCEIK 130
+ + CEI+
Sbjct 122 IDRSGVARCEIE 133
>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/133 (37%), Positives = 65/133 (49%), Gaps = 8/133 (6%)
Query 5 VVDAAAVVDALAG-----KGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISE 59
VVDA+ +VD LAG + A+ L G + AP LD EV ALR
Sbjct 5 VVDASVIVDLLAGDDSPRRKAARDRLTG---GDVFYAPAHLDVEVISALRGLARRTSRLA 61
Query 60 EQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL 119
E + + +L L R + + W+LR +T YDA YVALA +D LLT D++
Sbjct 62 EHTPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKY 121
Query 120 AAAPGLPCEIKLV 132
AA G C I+L+
Sbjct 122 AATAGPRCAIELI 134
>gi|284992067|ref|YP_003410621.1| PilT domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284065312|gb|ADB76250.1| PilT domain-containing protein [Geodermatophilus obscurus DSM
43160]
Length=131
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/106 (39%), Positives = 52/106 (50%), Gaps = 1/106 (0%)
Query 26 RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
R LL+ AP + + + LRRAVL+ + + A A L + + P L
Sbjct 25 RALLRGEDLTAPTHMQIQASNVLRRAVLAGRLGVDAASLAHLDLTRMSVRSFGFDP-LAT 83
Query 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKL 131
W+L VT YDA YVALA L VPL+T D RLA A G C L
Sbjct 84 RIWELHPAVTAYDAAYVALAEELAVPLVTLDRRLARASGPTCPFLL 129
>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/132 (35%), Positives = 67/132 (51%), Gaps = 12/132 (9%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISN------APHLLDAEVGHALRRAVLSDEIS 58
VVDA+AVV +L+ +G RG ++ AP + EV +LR L+ +++
Sbjct 3 VVDASAVVLSLSDRGP-----RGDAARALLAADPEWVAPEHVVIEVMQSLRGLYLAKQLT 57
Query 59 EEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSR 118
E+ LP L + +P L+ W+L+ N+T DA YVA+A PL+T D R
Sbjct 58 AEEVAELTRRLPGLAIRKVEVAP-LLGRIWELKDNLTPDDAAYVAVAELHGAPLVTADLR 116
Query 119 LAAAPGLPCEIK 130
L A G CEI+
Sbjct 117 LMRASGPRCEIR 128
>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
61 more sequence titles
Length=137
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/121 (37%), Positives = 60/121 (50%), Gaps = 1/121 (0%)
Query 2 DECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQ 61
++ VVDA+A+VD LA +R L + +AP DAEV AL R + ++
Sbjct 10 EQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAY 69
Query 62 ARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAA 121
AAL+ L + R+ S L+ W R + DALYV LA + LLT D RLA
Sbjct 70 VDAALEELRQVPVTRHGLSS-LLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLAR 128
Query 122 A 122
A
Sbjct 129 A 129
>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length=146
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/124 (36%), Positives = 61/124 (50%), Gaps = 4/124 (3%)
Query 3 ECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQA 62
E VVDA+A+VD L V R + ++ +AP +DAEV AL R +D +
Sbjct 21 EAVVDASALVDLLLDNELGRAVRRRIAGHAL-HAPAHVDAEVLSALGRLHRADSLDAGTV 79
Query 63 RAALDALPYLIDNRYP-HSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAA 121
L L R+P H L+ TW R + DA+Y+ LA + VPL+T D RL
Sbjct 80 EVKLRELAAAPIERHPVHD--LLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRLRG 137
Query 122 APGL 125
AP +
Sbjct 138 APSV 141
>gi|154246134|ref|YP_001417092.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154160219|gb|ABS67435.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=141
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/120 (36%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISN-APHLLDAEVGHALRRAVLSDEISEEQAR 63
VVDA+ V+ +G A R LL S AP L+ AEV +AL + + ++ E A
Sbjct 5 VVDASIVLKWFFDEGDRAEA-RALLASGASLLAPTLVQAEVANALWKKKRAGAMTVEDAI 63
Query 64 AALDALPYLIDNRYPHSPRL---IEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
LP +P P L IE +++L H + YD +Y++LA D P LT D RLA
Sbjct 64 HICAQLPPFFQRLFPVEPLLPVAIELSFRLDHAI--YDCIYLSLARETDCPFLTADRRLA 121
>gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_10224 [Mycobacterium tuberculosis
H37Ra]
gi|289744262|ref|ZP_06503640.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308231586|ref|ZP_07412990.2| toxin [Mycobacterium tuberculosis SUMu001]
gi|308395796|ref|ZP_07669348.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|289684790|gb|EFD52278.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308216759|gb|EFO76158.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308367245|gb|EFP56096.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=126
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/118 (38%), Positives = 58/118 (50%), Gaps = 1/118 (0%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA 64
VVDA+A+VD LA +R L + +AP DAEV AL R + ++ A
Sbjct 2 VVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDA 61
Query 65 ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA 122
AL+ L + R+ S L+ W R + DALYV LA + LLT D RLA A
Sbjct 62 ALEELRQVPVTRHGLSS-LLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 118
>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/118 (38%), Positives = 58/118 (50%), Gaps = 5/118 (4%)
Query 5 VVDAAAVVDALA-GKGASAIVLRGLLKESIS-NAPHLLDAEVGHALRRAVLSDEISEEQA 62
V+DA+A+VD L G I RG + + AP LL EV L R + I+ E++
Sbjct 3 VLDASALVDFLLLSPGWEQI--RGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES 60
Query 63 RAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA 120
+ L L R P L W +RH++ DA YVALA L PLLT D +LA
Sbjct 61 ASCLTQAGRLAIERVPMLD-LTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLA 117
>gi|336117185|ref|YP_004571952.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
gi|334684964|dbj|BAK34549.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
Length=50
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/45 (56%), Positives = 32/45 (72%), Gaps = 0/45 (0%)
Query 88 WQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
++LR NVT YDA YVALA AL+ L+T D RLA A G C I+++
Sbjct 5 FELRSNVTPYDACYVALAEALESELVTADRRLANASGPRCTIRVI 49
>gi|146303983|ref|YP_001191299.1| PilT domain-containing protein [Metallosphaera sedula DSM 5348]
gi|145702233|gb|ABP95375.1| PilT protein domain protein [Metallosphaera sedula DSM 5348]
Length=135
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/133 (35%), Positives = 64/133 (49%), Gaps = 13/133 (9%)
Query 5 VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLD---AEVGHALRRAVLSDEISEEQ 61
+VD +A+V + S V R LL+E + H LD E + LR+ V+ EIS +
Sbjct 4 IVDTSALVSVFLPETGSECV-RKLLEEH--DDLHFLDLIYYEFTNVLRKRVVRGEISPKD 60
Query 62 ARAALDALPYLIDNRYPHSPRLI---EYTWQLRHNVTFYDALYVALATALDVPLLTGDSR 118
A L+ LI N H R Y LR+++T YDA VALA +D +LT D +
Sbjct 61 AELVLERGMDLISNFPVHQGREFVGEAYEISLRYSITVYDASLVALANRVDGHVLTLDQK 120
Query 119 LAAAPG----LPC 127
L A +PC
Sbjct 121 LVTAVKGERMIPC 133
>gi|333989975|ref|YP_004522589.1| PilT protein domain-containing protein [Mycobacterium sp. JDM601]
gi|333485943|gb|AEF35335.1| PilT protein domain protein [Mycobacterium sp. JDM601]
Length=67
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/71 (44%), Positives = 41/71 (58%), Gaps = 8/71 (11%)
Query 66 LDALPYLIDNRYPHS---PRLIEYTWQLRHNVTFYDALYVALATALD-VPLLTGDSRLAA 121
+D L R+P PR+ W+LR N++ YDA YVALA +D LLT D+RLA
Sbjct 1 MDGFMRLTLTRFPADWLRPRI----WELRDNLSAYDATYVALAELVDATALLTTDARLAN 56
Query 122 APGLPCEIKLV 132
APG C + L+
Sbjct 57 APGPRCRVDLL 67
Lambda K H
0.320 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130457467840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40