BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0065

Length=133
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607207|ref|NP_214579.1|  hypothetical protein Rv0065 [Mycoba...   262    1e-68
gi|340625099|ref|YP_004743551.1|  hypothetical protein MCAN_00651...   261    3e-68
gi|289747834|ref|ZP_06507212.1|  conserved hypothetical protein [...   260    6e-68
gi|217979588|ref|YP_002363735.1|  PilT protein domain-containing ...  89.7    1e-16
gi|284992100|ref|YP_003410654.1|  PilT protein domain-containing ...  87.4    7e-16
gi|152966078|ref|YP_001361862.1|  PilT protein-like [Kineococcus ...  83.2    1e-14
gi|87300649|ref|ZP_01083491.1|  hypothetical protein WH5701_04355...  82.8    2e-14
gi|240168730|ref|ZP_04747389.1|  PilT domain-containing protein [...  78.6    3e-13
gi|86740207|ref|YP_480607.1|  PilT protein-like protein [Frankia ...  78.6    3e-13
gi|297625029|ref|YP_003706463.1|  PilT domain-containing protein ...  75.9    2e-12
gi|333990432|ref|YP_004523046.1|  hypothetical protein JDM601_179...  75.1    3e-12
gi|87124166|ref|ZP_01080016.1|  hypothetical protein RS9917_11161...  73.2    1e-11
gi|336178825|ref|YP_004584200.1|  PilT protein domain-containing ...  70.9    6e-11
gi|315446137|ref|YP_004079016.1|  nucleic acid-binding protein, c...  69.3    2e-10
gi|218295256|ref|ZP_03496092.1|  PilT protein domain protein [The...  68.6    3e-10
gi|145225776|ref|YP_001136454.1|  PilT domain-containing protein ...  68.6    3e-10
gi|15608858|ref|NP_216236.1|  hypothetical protein Rv1720c [Mycob...  68.2    4e-10
gi|15608100|ref|NP_215475.1|  hypothetical protein Rv0960 [Mycoba...  67.8    5e-10
gi|326903335|gb|EGE50268.1|  toxin [Mycobacterium tuberculosis W-...  67.8    5e-10
gi|289753016|ref|ZP_06512394.1|  conserved hypothetical protein [...  67.8    6e-10
gi|333025632|ref|ZP_08453696.1|  putative PilT protein-like prote...  67.0    1e-09
gi|340625973|ref|YP_004744425.1|  hypothetical protein MCAN_09641...  66.6    1e-09
gi|340626727|ref|YP_004745179.1|  hypothetical protein MCAN_17311...  66.6    1e-09
gi|336118169|ref|YP_004572938.1|  hypothetical protein MLP_25210 ...  66.2    1e-09
gi|336177502|ref|YP_004582877.1|  PilT protein domain-containing ...  65.5    2e-09
gi|330465116|ref|YP_004402859.1|  toxin [Verrucosispora maris AB-...  63.9    7e-09
gi|240170953|ref|ZP_04749612.1|  hypothetical protein MkanA1_1670...  63.9    7e-09
gi|50843515|ref|YP_056742.1|  hypothetical protein PPA2073 [Propi...  62.0    3e-08
gi|271964589|ref|YP_003338785.1|  PilT protein domain-containing ...  61.6    4e-08
gi|313832495|gb|EFS70209.1|  toxin-antitoxin system, toxin compon...  61.2    5e-08
gi|314967266|gb|EFT11365.1|  toxin-antitoxin system, toxin compon...  60.5    8e-08
gi|282854837|ref|ZP_06264171.1|  toxin-antitoxin system, toxin co...  60.1    1e-07
gi|289426009|ref|ZP_06427756.1|  toxin-antitoxin system, toxin co...  60.1    1e-07
gi|312195768|ref|YP_004015829.1|  PilT protein domain protein [Fr...  60.1    1e-07
gi|336179019|ref|YP_004584394.1|  PilT protein domain-containing ...  59.3    2e-07
gi|313836325|gb|EFS74039.1|  toxin-antitoxin system, toxin compon...  58.5    3e-07
gi|313827108|gb|EFS64822.1|  toxin-antitoxin system, toxin compon...  57.4    7e-07
gi|269957933|ref|YP_003327722.1|  PilT protein domain-containing ...  57.0    1e-06
gi|297161843|gb|ADI11555.1|  hypothetical protein SBI_08437 [Stre...  56.2    1e-06
gi|288917657|ref|ZP_06412020.1|  PilT protein domain protein [Fra...  55.8    2e-06
gi|284992067|ref|YP_003410621.1|  PilT domain-containing protein ...  54.7    5e-06
gi|311896050|dbj|BAJ28458.1|  hypothetical protein KSE_26460 [Kit...  52.8    2e-05
gi|15607689|ref|NP_215063.1|  hypothetical protein Rv0549c [Mycob...  52.4    2e-05
gi|256371478|ref|YP_003109302.1|  PilT protein domain-containing ...  52.4    2e-05
gi|154246134|ref|YP_001417092.1|  PilT domain-containing protein ...  51.6    4e-05
gi|167968378|ref|ZP_02550655.1|  hypothetical protein MtubH3_1022...  50.8    6e-05
gi|84494959|ref|ZP_00994078.1|  hypothetical protein JNB_09174 [J...  50.1    1e-04
gi|336117185|ref|YP_004571952.1|  hypothetical protein MLP_15350 ...  50.1    1e-04
gi|146303983|ref|YP_001191299.1|  PilT domain-containing protein ...  49.7    2e-04
gi|333989975|ref|YP_004522589.1|  PilT protein domain-containing ...  48.5    3e-04


>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
 gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
 gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=133

 Score =  262 bits (670),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  1    VDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE  60
            +DECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE
Sbjct  1    MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE  60

Query  61   QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120
            QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA
Sbjct  61   QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120

Query  121  AAPGLPCEIKLVR  133
            AAPGLPCEIKLVR
Sbjct  121  AAPGLPCEIKLVR  133


>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT 
140010059]
 gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133

 Score =  261 bits (666),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 131/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)

Query  1    VDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE  60
            +DECVVDAAA VDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE
Sbjct  1    MDECVVDAAAAVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE  60

Query  61   QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120
            QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA
Sbjct  61   QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120

Query  121  AAPGLPCEIKLVR  133
            AAPGLPCEIKLVR
Sbjct  121  AAPGLPCEIKLVR  133


>gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688362|gb|EFD55850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=133

 Score =  260 bits (664),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 131/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)

Query  1    VDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEE  60
            +DECVVDAAAVVDALAGKGASAIVLRGLLKE ISNAPHLLDAEVGHALRRAVLSDEISEE
Sbjct  1    MDECVVDAAAVVDALAGKGASAIVLRGLLKEPISNAPHLLDAEVGHALRRAVLSDEISEE  60

Query  61   QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120
            QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA
Sbjct  61   QARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120

Query  121  AAPGLPCEIKLVR  133
            AAPGLPCEIKLVR
Sbjct  121  AAPGLPCEIKLVR  133


>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris 
BL2]
 gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 62/130 (48%), Positives = 76/130 (59%), Gaps = 2/130 (1%)

Query  4    CVVDAAAVVDALAGKGASAIVLRGLLKESIS-NAPHLLDAEVGHALRRAVLSDEISEEQA  62
             VVDA+A+++AL    ++  V   L     + +APHLLD EV   +RR  LS EI   + 
Sbjct  2    IVVDASALLEALLRTPSAKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRARG  61

Query  63   RAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA  122
              AL  L  L   RYPH   L+   W LR+N+T YDA YVALA ALD PLLT D RLAAA
Sbjct  62   GLALADLADLPLRRYPHD-FLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA  120

Query  123  PGLPCEIKLV  132
             G    I+LV
Sbjct  121  AGHRARIELV  130


>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus 
DSM 43160]
 gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 56/128 (44%), Positives = 76/128 (60%), Gaps = 1/128 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ VV AL   G      R ++    ++APHLLD EV  A+RR  LSD + +  AR 
Sbjct  3    VVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAARD  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            A+ A+  L   R+ H   L++   QLR ++T YD +YVALA  L   L+TGD RL+ APG
Sbjct  63   AVTAMRDLPVIRHGHDL-LLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAPG  121

Query  125  LPCEIKLV  132
            L C + +V
Sbjct  122  LRCPVSVV  129


>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
 gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 46/99 (47%), Positives = 63/99 (64%), Gaps = 1/99 (1%)

Query  35   NAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNV  94
             AP ++D EV   LRRA  S  + + +A  A + L  L   R  H P L+   W+LRH V
Sbjct  3    TAPEVIDLEVASVLRRAAASGRLPDRRADLAWNDLIDLPLRRAGHRP-LLRRCWELRHTV  61

Query  95   TFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR  133
            T YDA YVALA ALD+ L+T D+RL+ APG+ CE++++R
Sbjct  62   TSYDAAYVALAEALDIVLVTADARLSRAPGITCEVEVLR  100


>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
 gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 61/128 (48%), Positives = 80/128 (63%), Gaps = 5/128 (3%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ +VDAL  +GA+    R  L E+   AP L+DAE+   LRR VL+D+++E+ A  
Sbjct  3    VVDASVLVDALLIQGAA----RDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHALQ  58

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            AL     L   R+  S  L    W+LR N+T YDALYVALA  L   LLTGDSR A APG
Sbjct  59   ALATAQRLGLRRHV-SRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARAPG  117

Query  125  LPCEIKLV  132
            L C ++++
Sbjct  118  LRCHVEVM  125


>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 51/128 (40%), Positives = 72/128 (57%), Gaps = 1/128 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ +  AL    +   + R  L +    AP L+D EV    RR V +  +   +A +
Sbjct  30   VVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAKRMPARRAAS  89

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            A+  L  L   R  H P L+   W+L+H +T YDA YVALA ALD+ L+T D+RL+ A G
Sbjct  90   AVADLTNLPLRRSSHQP-LLHRVWELQHVLTAYDAAYVALAEALDIVLVTADARLSRASG  148

Query  125  LPCEIKLV  132
              CEI++V
Sbjct  149  THCEIEVV  156


>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 47/126 (38%), Positives = 69/126 (55%), Gaps = 1/126 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            V+D +A+V+ L G    A V+R L       APH +D E    LR      ++ E +A  
Sbjct  3    VLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEASR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            AL+ L  +   RY H+P L+   W+LRHN+  YDA Y+ALA  L+  L+T + +L   PG
Sbjct  63   ALELLGRMNLRRYGHAP-LLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDRVPG  121

Query  125  LPCEIK  130
            L C ++
Sbjct  122  LRCTVR  127


>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 53/121 (44%), Positives = 68/121 (57%), Gaps = 2/121 (1%)

Query  5    VVDAAAVVDALAG-KGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQAR  63
            V+DA+A V  L   + A A +   +L+    + P L D EV HALRR      IS  +A 
Sbjct  3    VLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPARAE  62

Query  64   AALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAP  123
             A   L  L   R+PH P L E  W+LR N++ YDA YVALA  L+ PL+T D+RL  AP
Sbjct  63   RAFARLRELRCERHPHVP-LAERVWELRANLSAYDATYVALAEILEAPLITLDARLGRAP  121

Query  124  G  124
            G
Sbjct  122  G  122


>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
 gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 56/127 (45%), Positives = 71/127 (56%), Gaps = 1/127 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDAAA+VDAL G   +   LR  L +   +AP LLD EV  ALR      ++S  +A  
Sbjct  3    VVDAAALVDALTGVDGTD-ELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAHD  61

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            AL     L   R+P S  L    + LR N+T YDA YVALA AL+  +LT D RLA + G
Sbjct  62   ALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARSGG  121

Query  125  LPCEIKL  131
               EI++
Sbjct  122  HSVEIRV  128


>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
 gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 56/128 (44%), Positives = 76/128 (60%), Gaps = 5/128 (3%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ +VDAL   GA+    R  L E+   AP L+DAE+   LRR VL++ + E+ A  
Sbjct  3    VVDASVLVDALLLDGAA----RARLAEANLQAPELIDAELLSVLRRLVLAERLGEQHALQ  58

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            AL A    +  R   S  L    W+LR N++ YDA+YVALA  L   LLT D+R A APG
Sbjct  59   AL-ATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARAPG  117

Query  125  LPCEIKLV  132
            L C ++++
Sbjct  118  LRCPVEVL  125


>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133

 Score = 70.9 bits (172),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 45/132 (35%), Positives = 68/132 (52%), Gaps = 7/132 (5%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVD + V+D L+ +    ++ + L      +APH LD EV   +R      +I++ +   
Sbjct  6    VVDCSLVIDVLSVRNGDEVLRQRLSAPRTLHAPHHLDVEVASTVRGLAAGKKITDHRGEQ  65

Query  65   ALDALPYLIDNR---YPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAA  121
             L     L   R   +P+ PRL    W+LRHN+  YDA Y+ALA AL   LLTGD+++  
Sbjct  66   MLADYARLRITRHPVWPYHPRL----WELRHNLGAYDAAYIALAEALGCELLTGDTKIKN  121

Query  122  APGLPCEIKLVR  133
            A G    + + R
Sbjct  122  AAGHRATVIVTR  133


>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
 gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
Length=133

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 55/128 (43%), Positives = 72/128 (57%), Gaps = 1/128 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ +  AL   GA   + R  L      AP L+D EV    RR V +  ++  +A A
Sbjct  3    VVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRADA  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            A+  L  L   R  H P L+E  W LR  VT YDA Y ALA AL+V L+T D RLA APG
Sbjct  63   AVSDLADLPLRRCSHRP-LLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARAPG  121

Query  125  LPCEIKLV  132
            L C+++++
Sbjct  122  LACDVEVI  129


>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 45/94 (48%), Positives = 56/94 (60%), Gaps = 1/94 (1%)

Query  36   APHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVT  95
            AP LLDAEV   +R+A LS  +S  +A+ AL+ L      R  H P L+   + LR  +T
Sbjct  35   APALLDAEVLAVVRKATLSGRLSPTRAQEALEDLFSWPLFRVDHGPLLLP-AFALRDRLT  93

Query  96   FYDALYVALATALDVPLLTGDSRLAAAPGLPCEI  129
             YDALYVALA  L  P+LT D  LA APGLP  +
Sbjct  94   AYDALYVALAQRLSAPILTADGPLARAPGLPVPL  127


>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 54/128 (43%), Positives = 71/128 (56%), Gaps = 1/128 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ +  AL   GA     R  L      AP L+D EV    RR V +  ++  +A A
Sbjct  25   VVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRADA  84

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
             +  L  L   R  H P L+E  W LR  VT YDA Y ALA AL+V L+T D+RLA APG
Sbjct  85   GVSDLEDLPLRRCSHRP-LLERIWALRRTVTPYDAAYAALAEALEVVLVTADARLARAPG  143

Query  125  LPCEIKLV  132
            L C+++++
Sbjct  144  LACDVEVI  151


>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
 gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
 gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=129

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 50/128 (40%), Positives = 69/128 (54%), Gaps = 2/128 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            V+DA+A V+ +    A A V R L  E++ +AP   D EV  A+R+AV+   IS+ +   
Sbjct  3    VLDASAAVELMLTTPAGAAVARRLRGETV-HAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
             +     L   R+P  P   +  +QLR   T  D  YVALA  L VPL+T D RLA + G
Sbjct  62   VVVNFLSLPVRRWPLKP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120

Query  125  LPCEIKLV  132
               EI+LV
Sbjct  121  HNAEIELV  128


>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
 gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
 gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=127

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  26   RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85
            R L+     + PHL+D+E+   LRR    D +     R AL     L   RYP    L E
Sbjct  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE  78

Query  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132
              W++R N++ YDA YVALA AL+  L+T D RL+      C I +V
Sbjct  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125


>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 50/128 (40%), Positives = 68/128 (54%), Gaps = 2/128 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            V+DA+A V+ +    A A V R L  E++  AP   D EV  A+R+AV+   IS+ +   
Sbjct  3    VLDASAAVELMLTTPAGAAVARRLRGETV-RAPAHFDVEVIGAIRQAVVRQLISDHEGLV  61

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
             +     L   R+P  P   +  +QLR   T  D  YVALA  L VPL+T D RLA + G
Sbjct  62   VVVNFLSLPVRRWPLKP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120

Query  125  LPCEIKLV  132
               EI+LV
Sbjct  121  HNAEIELV  128


>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127

 Score = 67.8 bits (164),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  26   RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85
            R L+     + PHL+D+E+   LRR    D +     R AL     L   RYP    L E
Sbjct  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWALQTWRRLAVTRYPVVG-LFE  78

Query  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132
              W++R N++ YDA YVALA AL+  L+T D RL+      C I +V
Sbjct  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125


>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
 gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 39/97 (41%), Positives = 52/97 (54%), Gaps = 1/97 (1%)

Query  36   APHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVT  95
            AP L+D E  +  R  + + +I+E  A  A+  LP     R  H   L    W+LRHN +
Sbjct  6    APALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFR-VWELRHNYS  64

Query  96   FYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132
             YDA YVALA  L   LLTGD+RL    G  C ++L+
Sbjct  65   PYDASYVALAEQLGATLLTGDARLQRGTGKRCPVELI  101


>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT 
140010059]
 gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  26   RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85
            R L+     + PHL+D+E+   LRR V  D +       AL     L   RYP    L E
Sbjct  20   RQLIAAERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRALQTWRRLAVTRYPVVG-LFE  78

Query  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132
              W++R N++ YDA YVALA AL+  L+T D RL+      C I +V
Sbjct  79   RIWEIRANLSAYDASYVALAEALNCELVTADLRLSNTGQARCPITVV  125


>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT 
140010059]
 gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 49/128 (39%), Positives = 68/128 (54%), Gaps = 2/128 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            V+DA+A V+ +    A A V R L  E++ +AP   D EV  A+ +AV+   IS+ +   
Sbjct  3    VLDASAAVELMLATPAGAAVARRLRGETV-HAPAHFDVEVIGAIHQAVVRQLISDHEGLV  61

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
             +     L   R+P  P   +  +QLR   T  D  YVALA  L VPL+T D RLA + G
Sbjct  62   VVVNFLSLPVRRWPLKP-FTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHG  120

Query  125  LPCEIKLV  132
               EI+LV
Sbjct  121  HTAEIELV  128


>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
 gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 52/126 (42%), Positives = 68/126 (54%), Gaps = 9/126 (7%)

Query  11   VVDALAGKGASAIVLRG-LLKESISNA-PHLLDAEVGHALRRAVLSDEISEEQARAALD-  67
            V+ AL  +  S    R  LLK+    A P LL  EV  A+RR     E++  +A AA++ 
Sbjct  2    VIAALVDENRSGAWARSRLLKDKDKTAVPDLLYLEVASAVRRLEQRGELTARRAAAAMED  61

Query  68   --ALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGL  125
              ALP  +       PR     W+LRHN+T YDA YV LA   + PL+T D RLAAA G 
Sbjct  62   LMALPLQVARLRTLLPR----CWELRHNLTPYDAAYVTLAEFSESPLVTADRRLAAAAGP  117

Query  126  PCEIKL  131
             C+I+L
Sbjct  118  RCKIEL  123


>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 52/132 (40%), Positives = 73/132 (56%), Gaps = 8/132 (6%)

Query  5    VVDAAAVVDALA---GKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQ  61
            VVDA+ + +AL     +G  A V  G   ++   AP     EV   +    L  +ISEE+
Sbjct  3    VVDASVLANALVYADERGQRARVALG--HDTEWAAPEHWMVEVFSVMHGLTLGKKISEER  60

Query  62   ARAALDALPYL-IDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120
            AR+A+  LP+L +D  +     L+   WQLR  ++ YDA YVALA A D+ L+T DSRLA
Sbjct  61   ARSAIARLPHLGVD--HVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLA  118

Query  121  AAPGLPCEIKLV  132
             A    C ++LV
Sbjct  119  RAAMPFCAVRLV  130


>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
 gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 72/129 (56%), Gaps = 2/129 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRG-LLKESISNAPHLLDAEVGHALRRAVLSDEISEEQAR  63
            VVDA+ + DAL   G      R  L  +    AP  L  EV   +R  VL  ++   +A+
Sbjct  8    VVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLARAQ  67

Query  64   AALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAP  123
             A+D LP L+ +    +  L++  WQLR NVT YDA Y+A A  L  PL+TGD RLA A 
Sbjct  68   EAIDTLPSLVIDEVGVAT-LLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKAN  126

Query  124  GLPCEIKLV  132
            G+ CEI+L+
Sbjct  127  GVRCEIRLL  135


>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC 
12478]
Length=129

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 49/128 (39%), Positives = 69/128 (54%), Gaps = 2/128 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            V+DA+A V+ +      A V R L  E++ +AP  +D EV  A+RRAV+   IS+ +   
Sbjct  3    VLDASAAVELVLATPPGAAVARRLRDETV-HAPAHIDVEVIGAIRRAVVRRLISDHEGVV  61

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            A+     L   R+P  P   +  +QLR      DA+YVALA    V L+T D RLA + G
Sbjct  62   AVADFLSLQIRRWPIKP-FAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQSHG  120

Query  125  LPCEIKLV  132
               EI+LV
Sbjct  121  HDAEIELV  128


>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
 gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL030PA1]
 gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes 
6609]
Length=129

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 42/115 (37%), Positives = 57/115 (50%), Gaps = 2/115 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ + + L G        +    E    AP  L AE+ H +R   L   I++ +A  
Sbjct  4    VVDASVLAEMLVGSTVGRAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
             L          YP  P +++  W++RHNV+ YDALYV LA  L V LLT D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL  116


>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum 
DSM 43021]
 gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 50/131 (39%), Positives = 72/131 (55%), Gaps = 9/131 (6%)

Query  4    CVVDAAAVVDALAG-KGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDE----IS  58
             VVDA+ V   LA  KG    +LR  L   + +AP L+D E+   +R  V++ +    IS
Sbjct  3    LVVDASIVFRLLANVKGDD--LLRQRLARKV-HAPALIDVEIASVVRGHVVTGKPEVRIS  59

Query  59   EEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSR  118
            E +A+  L+    L   R+P  P L     +LR+N+T YD +YVALA  L VP+LT D++
Sbjct  60   EARAQIMLERYAQLKIVRHPMLP-LQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAK  118

Query  119  LAAAPGLPCEI  129
             A + G   EI
Sbjct  119  FAGSTGHRTEI  129


>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL056PA1]
Length=129

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 42/115 (37%), Positives = 57/115 (50%), Gaps = 2/115 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ + + L G        +    E    AP  L AE+ H +R   L   I++ +A  
Sbjct  4    VVDASVLAEMLVGSTVGHAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
             L     L    YP  P +++  W++RHNV+ YDALYV LA  L   LLT D RL
Sbjct  63   ILSDFRALKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL082PA2]
 gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA3]
 gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA4]
 gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL060PA1]
 gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL103PA1]
Length=129

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 2/115 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ + + L G        +    E      HLL AE+ H +R   L   I++ +A  
Sbjct  4    VVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLL-AEIAHVVRNLSLGHLITDAEAMR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
             L          YP  P +++  W++RHNV+ YDALYV LA  L   LLT D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J139]
 gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
 gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
 7 more sequence titles
 Length=129

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 2/115 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ + + L G        +    E    AP  L AE+ H +R   L   I++ +A  
Sbjct  4    VVDASVLAEMLVGSTVGRAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
             L          YP  P +++  W++RHNV+ YDALYV LA  L   LLT D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes SK187]
 gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J165]
 gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
 55 more sequence titles
 Length=129

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 2/115 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ + + L G        +    E    AP  L AE+ H +R   L   I++ +A  
Sbjct  4    VVDASVLAEMLVGSTVGHAAWQQWGGEEFI-APQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
             L          YP  P +++  W++RHNV+ YDALYV LA  L   LLT D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
 gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 66/125 (53%), Gaps = 1/125 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            V+DA+A V  L   G +   +  ++  +   AP L+  E  + LRR +L+  +   +A  
Sbjct  10   VLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEATL  69

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPG  124
            A   L  +   R  ++  L +  W LR N+T YDA YVALA AL  PL+T D+RL  A G
Sbjct  70   AHADLLAMPVRRLAYA-SLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRASG  128

Query  125  LPCEI  129
              CE+
Sbjct  129  PRCEV  133


>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 44/129 (35%), Positives = 73/129 (57%), Gaps = 4/129 (3%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLK--ESISNAPHLLDAEVGHALRRAVLSDEISEEQA  62
            V+D +A+V  L  +GA  + +R  L   ES++ AP LLD E+  AL   +  ++I++ + 
Sbjct  7    VIDCSALVRTLTDQGAGGVAVRRRLAGLESLA-APGLLDYEIVSALFGMLRGNKITKRET  65

Query  63   RAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA  122
              A+     L   R+  +  L     +L HN++ YDA YVALA AL +PL+T D+R+A +
Sbjct  66   TKAVADYQILPLVRH-ETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARS  124

Query  123  PGLPCEIKL  131
                C +++
Sbjct  125  GTAACAVEV  133


>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA2]
 gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL044PA1]
 gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA3]
 gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
humerusii P08]
Length=197

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 45/84 (54%), Gaps = 1/84 (1%)

Query  36   APHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVT  95
            AP  L AE+ H +R   L   I++ +A   L          YP  P +++  W++RHNV+
Sbjct  34   APQHLSAEIAHVVRNLSLGQLITDAEAMQILSDFRAFKVELYPVEPLMVD-AWEMRHNVS  92

Query  96   FYDALYVALATALDVPLLTGDSRL  119
             YDALYV LA  L   LLT D RL
Sbjct  93   AYDALYVVLARLLGACLLTRDHRL  116


>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL063PA1]
Length=129

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 40/115 (35%), Positives = 55/115 (48%), Gaps = 2/115 (1%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+ + + L G        +    E    AP  L AE+ H +R       I++ +A  
Sbjct  4    VVDASVLAEMLVGSTVGHAAWQQWGGEEFI-APQHLPAEIAHVVRNLSSGHLITDAEAMR  62

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
             L          YP  P +++  W++RHNV+ YDALYV LA  L   LLT D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVD-AWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|269957933|ref|YP_003327722.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306614|gb|ACZ32164.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM 
15894]
Length=138

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 50/131 (39%), Positives = 70/131 (54%), Gaps = 4/131 (3%)

Query  5    VVDAAAVVDALAGKGASAIVLRGL-LKESISNAPHLLDAEVGHALRRAVLSDEISEEQAR  63
            VVDA+A+ + L    A   +   L   +   + PHL   E    LR  VL   ++ E+A 
Sbjct  6    VVDASALAEYLVSSAAGQAIGEELRAHDGALHVPHLAVVETVSVLRGLVLGGFLTAERAA  65

Query  64   AALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA--A  121
            AAL  L  L   R+P  P L+   W+LR N++ YDA YVALA ALD  ++T D+RLA  A
Sbjct  66   AALADLADLPAERWPSEP-LLPRIWELRSNLSAYDATYVALAEALDADVVTRDARLARGA  124

Query  122  APGLPCEIKLV  132
                 C +++V
Sbjct  125  QTVSRCTVRVV  135


>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis 
BCW-1]
Length=139

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 46/132 (35%), Positives = 72/132 (55%), Gaps = 7/132 (5%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLL-KESISNAPHLLDAEV-----GHALRRAVLSDEIS  58
            VVD +A++  L+ +G +  ++R  + KE    APHL+D E+     G A  R     ++S
Sbjct  3    VVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPKLS  62

Query  59   EEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSR  118
            E+Q R A+     L  +R+  +  L E    L  N++ YDA YVALA  L +PL+T D+R
Sbjct  63   EKQLRKAVATYRDLAIDRH-ETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSDAR  121

Query  119  LAAAPGLPCEIK  130
            +  +    CEI+
Sbjct  122  IDRSGVARCEIE  133


>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 48/133 (37%), Positives = 65/133 (49%), Gaps = 8/133 (6%)

Query  5    VVDAAAVVDALAG-----KGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISE  59
            VVDA+ +VD LAG     + A+   L G     +  AP  LD EV  ALR          
Sbjct  5    VVDASVIVDLLAGDDSPRRKAARDRLTG---GDVFYAPAHLDVEVISALRGLARRTSRLA  61

Query  60   EQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRL  119
            E   + + +L  L   R   +    +  W+LR  +T YDA YVALA  +D  LLT D++ 
Sbjct  62   EHTPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKY  121

Query  120  AAAPGLPCEIKLV  132
            AA  G  C I+L+
Sbjct  122  AATAGPRCAIELI  134


>gi|284992067|ref|YP_003410621.1| PilT domain-containing protein [Geodermatophilus obscurus DSM 
43160]
 gi|284065312|gb|ADB76250.1| PilT domain-containing protein [Geodermatophilus obscurus DSM 
43160]
Length=131

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 41/106 (39%), Positives = 52/106 (50%), Gaps = 1/106 (0%)

Query  26   RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85
            R LL+     AP  +  +  + LRRAVL+  +  + A  A   L  +    +   P L  
Sbjct  25   RALLRGEDLTAPTHMQIQASNVLRRAVLAGRLGVDAASLAHLDLTRMSVRSFGFDP-LAT  83

Query  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKL  131
              W+L   VT YDA YVALA  L VPL+T D RLA A G  C   L
Sbjct  84   RIWELHPAVTAYDAAYVALAEELAVPLVTLDRRLARASGPTCPFLL  129


>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 45/132 (35%), Positives = 67/132 (51%), Gaps = 12/132 (9%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISN------APHLLDAEVGHALRRAVLSDEIS  58
            VVDA+AVV +L+ +G      RG    ++        AP  +  EV  +LR   L+ +++
Sbjct  3    VVDASAVVLSLSDRGP-----RGDAARALLAADPEWVAPEHVVIEVMQSLRGLYLAKQLT  57

Query  59   EEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSR  118
             E+       LP L   +   +P L+   W+L+ N+T  DA YVA+A     PL+T D R
Sbjct  58   AEEVAELTRRLPGLAIRKVEVAP-LLGRIWELKDNLTPDDAAYVAVAELHGAPLVTADLR  116

Query  119  LAAAPGLPCEIK  130
            L  A G  CEI+
Sbjct  117  LMRASGPRCEIR  128


>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
 gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
 gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
 61 more sequence titles
 Length=137

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 44/121 (37%), Positives = 60/121 (50%), Gaps = 1/121 (0%)

Query  2    DECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQ  61
            ++ VVDA+A+VD LA        +R  L  +  +AP   DAEV  AL R   +  ++   
Sbjct  10   EQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAY  69

Query  62   ARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAA  121
              AAL+ L  +   R+  S  L+   W  R  +   DALYV LA    + LLT D RLA 
Sbjct  70   VDAALEELRQVPVTRHGLSS-LLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLAR  128

Query  122  A  122
            A
Sbjct  129  A  129


>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans 
DSM 10331]
 gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=146

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 44/124 (36%), Positives = 61/124 (50%), Gaps = 4/124 (3%)

Query  3    ECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQA  62
            E VVDA+A+VD L        V R +   ++ +AP  +DAEV  AL R   +D +     
Sbjct  21   EAVVDASALVDLLLDNELGRAVRRRIAGHAL-HAPAHVDAEVLSALGRLHRADSLDAGTV  79

Query  63   RAALDALPYLIDNRYP-HSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAA  121
               L  L      R+P H   L+  TW  R  +   DA+Y+ LA +  VPL+T D RL  
Sbjct  80   EVKLRELAAAPIERHPVHD--LLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRLRG  137

Query  122  APGL  125
            AP +
Sbjct  138  APSV  141


>gi|154246134|ref|YP_001417092.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154160219|gb|ABS67435.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=141

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 43/120 (36%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISN-APHLLDAEVGHALRRAVLSDEISEEQAR  63
            VVDA+ V+     +G  A   R LL    S  AP L+ AEV +AL +   +  ++ E A 
Sbjct  5    VVDASIVLKWFFDEGDRAEA-RALLASGASLLAPTLVQAEVANALWKKKRAGAMTVEDAI  63

Query  64   AALDALPYLIDNRYPHSPRL---IEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120
                 LP      +P  P L   IE +++L H +  YD +Y++LA   D P LT D RLA
Sbjct  64   HICAQLPPFFQRLFPVEPLLPVAIELSFRLDHAI--YDCIYLSLARETDCPFLTADRRLA  121


>gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_10224 [Mycobacterium tuberculosis 
H37Ra]
 gi|289744262|ref|ZP_06503640.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308231586|ref|ZP_07412990.2| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308395796|ref|ZP_07669348.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|289684790|gb|EFD52278.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308216759|gb|EFO76158.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308367245|gb|EFP56096.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=126

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 44/118 (38%), Positives = 58/118 (50%), Gaps = 1/118 (0%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARA  64
            VVDA+A+VD LA        +R  L  +  +AP   DAEV  AL R   +  ++     A
Sbjct  2    VVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDA  61

Query  65   ALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA  122
            AL+ L  +   R+  S  L+   W  R  +   DALYV LA    + LLT D RLA A
Sbjct  62   ALEELRQVPVTRHGLSS-LLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  118


>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
 gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 44/118 (38%), Positives = 58/118 (50%), Gaps = 5/118 (4%)

Query  5    VVDAAAVVDALA-GKGASAIVLRGLLKESIS-NAPHLLDAEVGHALRRAVLSDEISEEQA  62
            V+DA+A+VD L    G   I  RG +   +   AP LL  EV   L R   +  I+ E++
Sbjct  3    VLDASALVDFLLLSPGWEQI--RGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES  60

Query  63   RAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLA  120
             + L     L   R P    L    W +RH++   DA YVALA  L  PLLT D +LA
Sbjct  61   ASCLTQAGRLAIERVPMLD-LTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLA  117


>gi|336117185|ref|YP_004571952.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
 gi|334684964|dbj|BAK34549.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
Length=50

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/45 (56%), Positives = 32/45 (72%), Gaps = 0/45 (0%)

Query  88   WQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132
            ++LR NVT YDA YVALA AL+  L+T D RLA A G  C I+++
Sbjct  5    FELRSNVTPYDACYVALAEALESELVTADRRLANASGPRCTIRVI  49


>gi|146303983|ref|YP_001191299.1| PilT domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702233|gb|ABP95375.1| PilT protein domain protein [Metallosphaera sedula DSM 5348]
Length=135

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 46/133 (35%), Positives = 64/133 (49%), Gaps = 13/133 (9%)

Query  5    VVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLD---AEVGHALRRAVLSDEISEEQ  61
            +VD +A+V     +  S  V R LL+E   +  H LD    E  + LR+ V+  EIS + 
Sbjct  4    IVDTSALVSVFLPETGSECV-RKLLEEH--DDLHFLDLIYYEFTNVLRKRVVRGEISPKD  60

Query  62   ARAALDALPYLIDNRYPHSPRLI---EYTWQLRHNVTFYDALYVALATALDVPLLTGDSR  118
            A   L+    LI N   H  R      Y   LR+++T YDA  VALA  +D  +LT D +
Sbjct  61   AELVLERGMDLISNFPVHQGREFVGEAYEISLRYSITVYDASLVALANRVDGHVLTLDQK  120

Query  119  LAAAPG----LPC  127
            L  A      +PC
Sbjct  121  LVTAVKGERMIPC  133


>gi|333989975|ref|YP_004522589.1| PilT protein domain-containing protein [Mycobacterium sp. JDM601]
 gi|333485943|gb|AEF35335.1| PilT protein domain protein [Mycobacterium sp. JDM601]
Length=67

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 31/71 (44%), Positives = 41/71 (58%), Gaps = 8/71 (11%)

Query  66   LDALPYLIDNRYPHS---PRLIEYTWQLRHNVTFYDALYVALATALD-VPLLTGDSRLAA  121
            +D    L   R+P     PR+    W+LR N++ YDA YVALA  +D   LLT D+RLA 
Sbjct  1    MDGFMRLTLTRFPADWLRPRI----WELRDNLSAYDATYVALAELVDATALLTTDARLAN  56

Query  122  APGLPCEIKLV  132
            APG  C + L+
Sbjct  57   APGPRCRVDLL  67



Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130457467840




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40