BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0071
Length=235
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607213|ref|NP_214585.1| maturase [Mycobacterium tuberculosi... 473 1e-131
gi|306778893|ref|ZP_07417230.1| maturase [Mycobacterium tubercul... 470 7e-131
gi|254366528|ref|ZP_04982572.1| hypothetical maturase [Mycobacte... 458 2e-127
gi|289567959|ref|ZP_06448186.1| maturase [Mycobacterium tubercul... 458 3e-127
gi|121635982|ref|YP_976205.1| putative maturase [Mycobacterium b... 421 6e-116
gi|15839450|ref|NP_334487.1| hypothetical protein MT0077 [Mycoba... 421 6e-116
gi|254233469|ref|ZP_04926795.1| hypothetical protein TBCG_00071 ... 421 6e-116
gi|148821262|ref|YP_001286016.1| maturase [Mycobacterium tubercu... 421 6e-116
gi|145596649|ref|YP_001160946.1| RNA-directed DNA polymerase [Sa... 226 3e-57
gi|111026259|ref|YP_708542.1| RNA-directed DNA polymerase [Rhodo... 223 2e-56
gi|331693932|ref|YP_004330171.1| RNA-directed DNA polymerase [Ps... 220 2e-55
gi|256393155|ref|YP_003114719.1| RNA-directed DNA polymerase [Ca... 201 9e-50
gi|326439798|ref|ZP_08214532.1| RNA-directed DNA polymerase [Str... 182 3e-44
gi|254390297|ref|ZP_05005515.1| RNA-directed DNA polymerase [Str... 182 3e-44
gi|294811250|ref|ZP_06769893.1| RNA-directed DNA polymerase [Str... 182 3e-44
gi|297163012|gb|ADI12724.1| RNA-directed DNA polymerase [Strepto... 178 6e-43
gi|297154872|gb|ADI04584.1| RNA-directed DNA polymerase [Strepto... 172 4e-41
gi|336177663|ref|YP_004583038.1| RNA-directed DNA polymerase [Fr... 171 8e-41
gi|317124020|ref|YP_004098132.1| RNA-directed DNA polymerase [In... 170 2e-40
gi|260905481|ref|ZP_05913803.1| RNA-directed DNA polymerase [Bre... 167 8e-40
gi|296169325|ref|ZP_06850953.1| RNA-directed DNA polymerase [Myc... 166 3e-39
gi|345012103|ref|YP_004814457.1| RNA-directed DNA polymerase [St... 159 4e-37
gi|310819888|ref|YP_003952246.1| RNA-directed DNA polymerase [St... 150 1e-34
gi|310819782|ref|YP_003952140.1| RNA-directed DNA polymerase [St... 150 1e-34
gi|324323785|gb|ADY24829.1| hypothetical protein YBT020_28364 [B... 147 1e-33
gi|284005911|ref|YP_003391729.1| RNA-directed DNA polymerase (Re... 147 1e-33
gi|334319429|ref|YP_004551988.1| RNA-directed DNA polymerase [Si... 141 1e-31
gi|16263485|ref|NP_436278.1| putative reverse transcriptase [Sin... 140 1e-31
gi|253577275|ref|ZP_04854593.1| RNA-directed DNA polymerase [Pae... 134 2e-29
gi|51892689|ref|YP_075380.1| group II intron-encoding maturase [... 133 2e-29
gi|51892932|ref|YP_075623.1| group II intron-encoding maturase [... 132 3e-29
gi|302392022|ref|YP_003827842.1| RNA-directed DNA polymerase (Re... 132 3e-29
gi|51892122|ref|YP_074813.1| group II intron-encoding maturase [... 132 5e-29
gi|51893118|ref|YP_075809.1| group II intron-encoding maturase [... 132 5e-29
gi|224369732|ref|YP_002603896.1| LtrA [Desulfobacterium autotrop... 132 5e-29
gi|51892032|ref|YP_074723.1| group II intron-encoding maturase [... 132 5e-29
gi|51891882|ref|YP_074573.1| group II intron-encoding maturase [... 132 5e-29
gi|51893870|ref|YP_076561.1| group II intron-encoding maturase [... 132 5e-29
gi|51892018|ref|YP_074709.1| group II intron-encoding maturase [... 132 5e-29
gi|51892893|ref|YP_075584.1| group II intron-encoding maturase v... 132 5e-29
gi|302038148|ref|YP_003798470.1| putative reverse transcriptase ... 132 5e-29
gi|51893864|ref|YP_076555.1| group II intron-encoding maturase, ... 132 6e-29
gi|77406984|ref|ZP_00784000.1| prophage LambdaSa1, reverse trans... 131 6e-29
gi|315645325|ref|ZP_07898450.1| reverse transcriptase (RNA-depen... 131 7e-29
gi|22536745|ref|NP_687596.1| prophage LambdaSa1, reverse transcr... 131 7e-29
gi|51893418|ref|YP_076109.1| hypothetical protein STH2280 [Symbi... 131 8e-29
gi|116750621|ref|YP_847308.1| RNA-directed DNA polymerase [Syntr... 131 8e-29
gi|344200410|ref|YP_004784736.1| RNA-directed DNA polymerase [Ac... 130 1e-28
gi|261418654|ref|YP_003252336.1| RNA-directed DNA polymerase (Re... 130 1e-28
gi|147678747|ref|YP_001212962.1| retron-type reverse transcripta... 130 1e-28
>gi|15607213|ref|NP_214585.1| maturase [Mycobacterium tuberculosis H37Rv]
gi|148659831|ref|YP_001281354.1| putative maturase [Mycobacterium tuberculosis H37Ra]
gi|167970600|ref|ZP_02552877.1| putative maturase [Mycobacterium tuberculosis H37Ra]
18 more sequence titles
Length=235
Score = 473 bits (1216), Expect = 1e-131, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%), Gaps = 0/235 (0%)
Query 1 MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQ 60
MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQ
Sbjct 1 MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQ 60
Query 61 FRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPAR 120
FRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPAR
Sbjct 61 FRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPAR 120
Query 121 RAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIR 180
RAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIR
Sbjct 121 RAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIR 180
Query 181 HRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 235
HRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 181 HRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 235
>gi|306778893|ref|ZP_07417230.1| maturase [Mycobacterium tuberculosis SUMu002]
gi|306787047|ref|ZP_07425369.1| maturase [Mycobacterium tuberculosis SUMu004]
gi|306791606|ref|ZP_07429908.1| maturase [Mycobacterium tuberculosis SUMu005]
gi|308328221|gb|EFP17072.1| maturase [Mycobacterium tuberculosis SUMu002]
gi|308336339|gb|EFP25190.1| maturase [Mycobacterium tuberculosis SUMu004]
gi|308339942|gb|EFP28793.1| maturase [Mycobacterium tuberculosis SUMu005]
Length=235
Score = 470 bits (1210), Expect = 7e-131, Method: Compositional matrix adjust.
Identities = 234/235 (99%), Positives = 234/235 (99%), Gaps = 0/235 (0%)
Query 1 MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQ 60
MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQ
Sbjct 1 MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQ 60
Query 61 FRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPAR 120
FRPQPV ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPAR
Sbjct 61 FRPQPVLERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPAR 120
Query 121 RAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIR 180
RAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIR
Sbjct 121 RAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIR 180
Query 181 HRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 235
HRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 181 HRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 235
>gi|254366528|ref|ZP_04982572.1| hypothetical maturase [Mycobacterium tuberculosis str. Haarlem]
gi|134152040|gb|EBA44085.1| hypothetical maturase [Mycobacterium tuberculosis str. Haarlem]
Length=236
Score = 458 bits (1179), Expect = 2e-127, Method: Compositional matrix adjust.
Identities = 228/228 (100%), Positives = 228/228 (100%), Gaps = 0/228 (0%)
Query 8 VDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVR 67
VDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVR
Sbjct 9 VDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVR 68
Query 68 ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIA 127
ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIA
Sbjct 69 ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIA 128
Query 128 EIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTD 187
EIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTD
Sbjct 129 EIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTD 188
Query 188 VRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 235
VRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 189 VRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 236
>gi|289567959|ref|ZP_06448186.1| maturase [Mycobacterium tuberculosis T17]
gi|289748537|ref|ZP_06507915.1| maturase [Mycobacterium tuberculosis T92]
gi|289756131|ref|ZP_06515509.1| maturase [Mycobacterium tuberculosis EAS054]
gi|289541712|gb|EFD45361.1| maturase [Mycobacterium tuberculosis T17]
gi|289689124|gb|EFD56553.1| maturase [Mycobacterium tuberculosis T92]
gi|289696718|gb|EFD64147.1| maturase [Mycobacterium tuberculosis EAS054]
Length=234
Score = 458 bits (1179), Expect = 3e-127, Method: Compositional matrix adjust.
Identities = 228/228 (100%), Positives = 228/228 (100%), Gaps = 0/228 (0%)
Query 8 VDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVR 67
VDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVR
Sbjct 7 VDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVR 66
Query 68 ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIA 127
ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIA
Sbjct 67 ERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIA 126
Query 128 EIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTD 187
EIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTD
Sbjct 127 EIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTD 186
Query 188 VRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 235
VRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 187 VRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV 234
>gi|121635982|ref|YP_976205.1| putative maturase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224988455|ref|YP_002643142.1| putative maturase [Mycobacterium bovis BCG str. Tokyo 172]
gi|121491629|emb|CAL70087.1| Possible maturase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224771568|dbj|BAH24374.1| putative maturase [Mycobacterium bovis BCG str. Tokyo 172]
gi|341599998|emb|CCC62666.1| possible maturase [Mycobacterium bovis BCG str. Moreau RDJ]
Length=250
Score = 421 bits (1081), Expect = 6e-116, Method: Compositional matrix adjust.
Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA
Sbjct 45 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 104
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 149
DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF
Sbjct 105 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 164
Query 150 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 209
DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL
Sbjct 165 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 224
Query 210 FNPAAVPIRRYRYRGNTIPTPWTQAV 235
FNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 225 FNPAAVPIRRYRYRGNTIPTPWTQAV 250
>gi|15839450|ref|NP_334487.1| hypothetical protein MT0077 [Mycobacterium tuberculosis CDC1551]
gi|31791248|ref|NP_853741.1| maturase [Mycobacterium bovis AF2122/97]
gi|289572650|ref|ZP_06452877.1| maturase [Mycobacterium tuberculosis K85]
10 more sequence titles
Length=238
Score = 421 bits (1081), Expect = 6e-116, Method: Compositional matrix adjust.
Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA
Sbjct 33 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 92
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 149
DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF
Sbjct 93 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 152
Query 150 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 209
DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL
Sbjct 153 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 212
Query 210 FNPAAVPIRRYRYRGNTIPTPWTQAV 235
FNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 213 FNPAAVPIRRYRYRGNTIPTPWTQAV 238
>gi|254233469|ref|ZP_04926795.1| hypothetical protein TBCG_00071 [Mycobacterium tuberculosis C]
gi|289441439|ref|ZP_06431183.1| maturase [Mycobacterium tuberculosis T46]
gi|124603262|gb|EAY61537.1| hypothetical protein TBCG_00071 [Mycobacterium tuberculosis C]
gi|289414358|gb|EFD11598.1| maturase [Mycobacterium tuberculosis T46]
Length=241
Score = 421 bits (1081), Expect = 6e-116, Method: Compositional matrix adjust.
Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA
Sbjct 36 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 95
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 149
DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF
Sbjct 96 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 155
Query 150 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 209
DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL
Sbjct 156 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 215
Query 210 FNPAAVPIRRYRYRGNTIPTPWTQAV 235
FNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 216 FNPAAVPIRRYRYRGNTIPTPWTQAV 241
>gi|148821262|ref|YP_001286016.1| maturase [Mycobacterium tuberculosis F11]
gi|253796988|ref|YP_003029989.1| maturase [Mycobacterium tuberculosis KZN 1435]
gi|254549003|ref|ZP_05139450.1| maturase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
13 more sequence titles
Length=232
Score = 421 bits (1081), Expect = 6e-116, Method: Compositional matrix adjust.
Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA
Sbjct 27 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 86
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 149
DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF
Sbjct 87 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 146
Query 150 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 209
DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL
Sbjct 147 DRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITL 206
Query 210 FNPAAVPIRRYRYRGNTIPTPWTQAV 235
FNPAAVPIRRYRYRGNTIPTPWTQAV
Sbjct 207 FNPAAVPIRRYRYRGNTIPTPWTQAV 232
>gi|145596649|ref|YP_001160946.1| RNA-directed DNA polymerase [Salinispora tropica CNB-440]
gi|145305986|gb|ABP56568.1| RNA-directed DNA polymerase [Salinispora tropica CNB-440]
Length=488
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/147 (77%), Positives = 122/147 (83%), Gaps = 0/147 (0%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG+TVA +E IG FL++LR ++K+G FRP PVRERKIPKPGG GKVRRLGIPTV
Sbjct 70 AGVDGMTVADVERHIGVPGFLDDLRVQVKTGTFRPLPVRERKIPKPGGSGKVRRLGIPTV 129
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKAC 148
ADRVVQAALKLVLEPIFE DF PVSYGFRP RRA D IAEIH +GT YRWVLDADI+AC
Sbjct 130 ADRVVQAALKLVLEPIFEADFLPVSYGFRPKRRAQDAIAEIHYYGTHGYRWVLDADIEAC 189
Query 149 FDRIDHADLMDRVRHRIKDKRVLRLVN 175
FD IDH LMDRVR RIKDKRVL LV
Sbjct 190 FDSIDHVALMDRVRTRIKDKRVLTLVK 216
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/68 (53%), Positives = 45/68 (67%), Gaps = 3/68 (4%)
Query 168 KRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTI 227
KRV+R++ RHRW+WTDVRR P GRW PISA I L AA+P+ RYR+R I
Sbjct 422 KRVIRMLI---ARHRWSWTDVRRHFVTPVGRWRPISAGEIELRPIAAIPVTRYRWRATRI 478
Query 228 PTPWTQAV 235
P+PW+ V
Sbjct 479 PSPWSTTV 486
>gi|111026259|ref|YP_708542.1| RNA-directed DNA polymerase [Rhodococcus jostii RHA1]
gi|110825102|gb|ABH00384.1| RNA-directed DNA polymerase [Rhodococcus jostii RHA1]
Length=464
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/146 (75%), Positives = 122/146 (84%), Gaps = 0/146 (0%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
G DG+TVA +E+ +G FL++LRT+LK G FRP PVRERKIPKPGG GKVR+LGIPTVA
Sbjct 47 GVDGMTVADVEASVGMSGFLDDLRTQLKDGSFRPLPVRERKIPKPGGSGKVRKLGIPTVA 106
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 149
DRVVQAALKLVLEPIFE DF PVSYGFRP RRAHD +AEI FGT+ YRWVLDADI+ACF
Sbjct 107 DRVVQAALKLVLEPIFEADFLPVSYGFRPKRRAHDAVAEIQYFGTKGYRWVLDADIEACF 166
Query 150 DRIDHADLMDRVRHRIKDKRVLRLVN 175
D I+H LM RVR R+KDKRVL LV
Sbjct 167 DSIEHTALMGRVRERVKDKRVLLLVK 192
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/63 (54%), Positives = 39/63 (62%), Gaps = 0/63 (0%)
Query 172 RLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPW 231
R+ W HRW+WTD+RR L P G W SADG+ LFN VP RYRYRG+ IP PW
Sbjct 399 RIARWWIRLHRWSWTDLRRHLIGPHGTWKMPSADGVELFNLGRVPTARYRYRGSKIPNPW 458
Query 232 TQA 234
A
Sbjct 459 AVA 461
>gi|331693932|ref|YP_004330171.1| RNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
gi|326948621|gb|AEA22318.1| RNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
Length=489
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/146 (75%), Positives = 122/146 (84%), Gaps = 0/146 (0%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
G DGL VA +E +IG+ FL+++RT+LK+G F P PVRERKIPKPGG GK+R LGIPTVA
Sbjct 73 GVDGLRVADVEDDIGSAVFLDDVRTQLKTGVFLPLPVRERKIPKPGGSGKLRALGIPTVA 132
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACF 149
DRVVQAALKLVLEPIFE DF PVSYGFRP RRAHD IAEIHLFGT YRWVLDADI+ACF
Sbjct 133 DRVVQAALKLVLEPIFEADFRPVSYGFRPKRRAHDAIAEIHLFGTNGYRWVLDADIEACF 192
Query 150 DRIDHADLMDRVRHRIKDKRVLRLVN 175
D IDH LM+RVR R+ D+RVL LV
Sbjct 193 DTIDHTALMERVRARVSDRRVLALVK 218
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/60 (64%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query 172 RLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPW 231
R+V R RH W W DVRRWL PTGRW P +ADGI LFN A VP+ RYRYR + IP PW
Sbjct 425 RVVTMVRNRHHWQWADVRRWLIGPTGRWLPPAADGIELFNMATVPVTRYRYR-SKIPNPW 483
>gi|256393155|ref|YP_003114719.1| RNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
gi|256359381|gb|ACU72878.1| RNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
Length=483
Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 107/172 (63%), Positives = 120/172 (70%), Gaps = 3/172 (1%)
Query 4 ITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRP 63
+ DP V D V AG DG TV+RIE + G EFL LR LKSG+F P
Sbjct 40 FNLVCDPATLVMAWDRVRGNKGSRTAGIDGRTVSRIEGQ-GVEEFLAGLRESLKSGEFWP 98
Query 64 QPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAH 123
PV+ER IPK G K+RRLGIPTVADRVVQAALKLVLEPIFE DFEP SYGFRP RRAH
Sbjct 99 VPVKERMIPKANG--KLRRLGIPTVADRVVQAALKLVLEPIFEVDFEPCSYGFRPNRRAH 156
Query 124 DTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
D IAEIH + ++ Y WVL+ DI+ACFD IDH LM RVR R+ DKRVLRL+
Sbjct 157 DAIAEIHHYASRGYEWVLEGDIEACFDNIDHTALMGRVRERVGDKRVLRLIK 208
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/65 (44%), Positives = 36/65 (56%), Gaps = 4/65 (6%)
Query 172 RLVNWQRIRHRWN-WTDVRRWL--TDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIP 228
R+ W R +HR W ++R + W P +GI LFNPA V I RYRYRG IP
Sbjct 413 RVWRWIRRKHRRVPWKKLKRLYQGSQVGATWWP-EHNGIHLFNPATVEIVRYRYRGTRIP 471
Query 229 TPWTQ 233
PW++
Sbjct 472 NPWSR 476
>gi|326439798|ref|ZP_08214532.1| RNA-directed DNA polymerase [Streptomyces clavuligerus ATCC 27064]
Length=476
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/172 (56%), Positives = 114/172 (67%), Gaps = 2/172 (1%)
Query 4 ITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRP 63
+ DP + D V AG DG T IE+ G ++FL+ LR+++K F P
Sbjct 40 FNLVADPAFLLVAWDRVRANKGARTAGVDGRTARSIEAGQGVVDFLDGLRSQVKDRSFCP 99
Query 64 QPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAH 123
PVRER IPK GG K+RRLGI T+ADRVVQA+LKLVLEPIFE DF P SYGFRP RRAH
Sbjct 100 LPVRERMIPKSGG--KLRRLGIATIADRVVQASLKLVLEPIFEADFYPCSYGFRPNRRAH 157
Query 124 DTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
D +AE+ F ++ Y WV++ DI ACFD I H LMDR+R RI DKRVL LV
Sbjct 158 DAVAEVRYFASRSYEWVVEGDITACFDEISHPTLMDRMRERIGDKRVLALVK 209
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 34/58 (59%), Gaps = 4/58 (6%)
Query 175 NWQRIRHRWN-WTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPW 231
+W R +HR + W D+RR D W P S + LFNPA V RYRYRG IPTPW
Sbjct 418 SWLRRKHRRSTWKDLRRRYCDVG--WWPASEER-PLFNPAKVTTTRYRYRGTVIPTPW 472
>gi|254390297|ref|ZP_05005515.1| RNA-directed DNA polymerase [Streptomyces clavuligerus ATCC 27064]
gi|197704002|gb|EDY49814.1| RNA-directed DNA polymerase [Streptomyces clavuligerus ATCC 27064]
Length=479
Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/172 (56%), Positives = 114/172 (67%), Gaps = 2/172 (1%)
Query 4 ITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRP 63
+ DP + D V AG DG T IE+ G ++FL+ LR+++K F P
Sbjct 43 FNLVADPAFLLVAWDRVRANKGARTAGVDGRTARSIEAGQGVVDFLDGLRSQVKDRSFCP 102
Query 64 QPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAH 123
PVRER IPK GG K+RRLGI T+ADRVVQA+LKLVLEPIFE DF P SYGFRP RRAH
Sbjct 103 LPVRERMIPKSGG--KLRRLGIATIADRVVQASLKLVLEPIFEADFYPCSYGFRPNRRAH 160
Query 124 DTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
D +AE+ F ++ Y WV++ DI ACFD I H LMDR+R RI DKRVL LV
Sbjct 161 DAVAEVRYFASRSYEWVVEGDITACFDEISHPTLMDRMRERIGDKRVLALVK 212
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 34/58 (59%), Gaps = 4/58 (6%)
Query 175 NWQRIRHRWN-WTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPW 231
+W R +HR + W D+RR D W P S + LFNPA V RYRYRG IPTPW
Sbjct 421 SWLRRKHRRSTWKDLRRRYCDVG--WWPASEER-PLFNPAKVTTTRYRYRGTVIPTPW 475
>gi|294811250|ref|ZP_06769893.1| RNA-directed DNA polymerase [Streptomyces clavuligerus ATCC 27064]
gi|294323849|gb|EFG05492.1| RNA-directed DNA polymerase [Streptomyces clavuligerus ATCC 27064]
Length=421
Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/147 (62%), Positives = 108/147 (74%), Gaps = 2/147 (1%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG T IE+ G ++FL+ LR+++K F P PVRER IPK GG K+RRLGI T+
Sbjct 10 AGVDGRTARSIEAGQGVVDFLDGLRSQVKDRSFCPLPVRERMIPKSGG--KLRRLGIATI 67
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKAC 148
ADRVVQA+LKLVLEPIFE DF P SYGFRP RRAHD +AE+ F ++ Y WV++ DI AC
Sbjct 68 ADRVVQASLKLVLEPIFEADFYPCSYGFRPNRRAHDAVAEVRYFASRSYEWVVEGDITAC 127
Query 149 FDRIDHADLMDRVRHRIKDKRVLRLVN 175
FD I H LMDR+R RI DKRVL LV
Sbjct 128 FDEISHPTLMDRMRERIGDKRVLALVK 154
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 34/58 (59%), Gaps = 4/58 (6%)
Query 175 NWQRIRHRWN-WTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPW 231
+W R +HR + W D+RR D W P S + LFNPA V RYRYRG IPTPW
Sbjct 363 SWLRRKHRRSTWKDLRRRYCDVG--WWPASEER-PLFNPAKVTTTRYRYRGTVIPTPW 417
>gi|297163012|gb|ADI12724.1| RNA-directed DNA polymerase [Streptomyces bingchenggensis BCW-1]
Length=476
Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/172 (55%), Positives = 109/172 (64%), Gaps = 2/172 (1%)
Query 4 ITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRP 63
+ DP + D V AG DG T A I G +FL+ LR +K FRP
Sbjct 40 FNLCADPAFLLVAWDRVRGNKGAKTAGVDGRTAASIAERTGVEDFLDALRGSIKDRSFRP 99
Query 64 QPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAH 123
PVRER IPK GG K+ RLGI T+ADRVVQA+LKLVLEPIFE DF P SYGFRP RAH
Sbjct 100 LPVRERMIPKTGG--KLCRLGIATIADRVVQASLKLVLEPIFEADFLPCSYGFRPNHRAH 157
Query 124 DTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
D +AE+ F + Y W+++ DIKACFD I H DL+DRVR RI DKRV LV
Sbjct 158 DAVAEVRHFTSHGYEWIVEGDIKACFDEISHPDLLDRVRLRIGDKRVFDLVK 209
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/62 (44%), Positives = 36/62 (59%), Gaps = 6/62 (9%)
Query 172 RLVNWQRIRHR-WNWTDVRRWLTDPTGR-WHPISADGITLFNPAAVPIRRYRYRGNTIPT 229
+++ W R +HR W D+RR GR W P + + TLF+P V RYRYRG IP+
Sbjct 415 QVMKWLRRKHRRITWKDLRRRYC---GRGWRP-AGEKRTLFDPGKVRTTRYRYRGAAIPS 470
Query 230 PW 231
PW
Sbjct 471 PW 472
>gi|297154872|gb|ADI04584.1| RNA-directed DNA polymerase [Streptomyces bingchenggensis BCW-1]
Length=449
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/148 (61%), Positives = 103/148 (70%), Gaps = 4/148 (2%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
G DG TV +E G FL LR+++K FRP PVRER IPK GK+RRLGI +VA
Sbjct 66 GVDGHTVYYVEQVRGVEGFLGVLRSQIKDRTFRPLPVRERMIPK--ATGKLRRLGIASVA 123
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGT--QEYRWVLDADIKA 147
DR VQA+LKLVLEPIFE DF P SYGFRP RRAHD IAE+H + + Y W+++ DI A
Sbjct 124 DRTVQASLKLVLEPIFEADFHPCSYGFRPMRRAHDAIAEVHYLASRPRNYEWIVEGDITA 183
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLVN 175
CFD IDH LM+RVR RI D RVL LV
Sbjct 184 CFDEIDHTALMNRVRSRIGDNRVLALVK 211
>gi|336177663|ref|YP_004583038.1| RNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
gi|334858643|gb|AEH09117.1| RNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
Length=478
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/149 (61%), Positives = 104/149 (70%), Gaps = 4/149 (2%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG T A I + IG E+L+ LR+ LK FRP PVRER IPK GG K+RRLGI T+
Sbjct 65 AGVDGRTAASIVARIGIPEYLDGLRSALKDRSFRPLPVRERMIPKAGG--KLRRLGIATI 122
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQE--YRWVLDADIK 146
DRVVQA+LKL LEPIFE DF P SYGFRP RRAHD +AEI ++ Y W+++ DIK
Sbjct 123 TDRVVQASLKLALEPIFEADFLPCSYGFRPMRRAHDAVAEIRYLTSKPRCYEWIVEGDIK 182
Query 147 ACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
ACFD I H L RVR RI D+RVL LV
Sbjct 183 ACFDEISHTSLTGRVRARIGDRRVLALVK 211
Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/68 (36%), Positives = 32/68 (48%), Gaps = 12/68 (17%)
Query 168 KRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTI 227
+R R W+ +RHR+ G W P + LF+P V RYRYRG+ I
Sbjct 423 RRKHRRSTWKELRHRYC-----------GGGWWP-TGQSRELFDPEKVSTTRYRYRGSVI 470
Query 228 PTPWTQAV 235
P+PW A
Sbjct 471 PSPWPAAA 478
>gi|317124020|ref|YP_004098132.1| RNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
gi|315588108|gb|ADU47405.1| RNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
Length=497
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/146 (60%), Positives = 102/146 (70%), Gaps = 2/146 (1%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG+TV +I FL + L+ G +RP PVR IPKPGG K R LGIPTV
Sbjct 70 AGVDGVTVRQIRQRGEVGVFLAGIAASLRDGTYRPAPVRRVLIPKPGG--KSRPLGIPTV 127
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKAC 148
DRVVQ +L++VLEPIFE DF PVSYGFRP RRAHD +AEIH + + YRWVLDADI+ C
Sbjct 128 TDRVVQQSLRMVLEPIFEADFLPVSYGFRPKRRAHDAVAEIHFYAGRGYRWVLDADIEGC 187
Query 149 FDRIDHADLMDRVRHRIKDKRVLRLV 174
FD IDH L+ VR RIKDK+ + LV
Sbjct 188 FDHIDHTALLGLVRERIKDKKTVALV 213
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/56 (54%), Positives = 36/56 (65%), Gaps = 0/56 (0%)
Query 172 RLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTI 227
R V WQR +HRWNW+ V+RWL P G W I+ + LF+P V I RYRYRG I
Sbjct 421 RFVAWQREQHRWNWSKVKRWLRRPDGSWRTIATEDAVLFDPTKVRIERYRYRGRQI 476
>gi|260905481|ref|ZP_05913803.1| RNA-directed DNA polymerase [Brevibacterium linens BL2]
Length=477
Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/168 (58%), Positives = 111/168 (67%), Gaps = 5/168 (2%)
Query 9 DPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRE 68
DP V D V AG DG+ R A+E L +R ++K+G+FRP PVRE
Sbjct 46 DPAFLVAGWDRVRGNKGGRTAGVDGVA-PRSLLHGQAVEVLTMIRRQVKTGEFRPLPVRE 104
Query 69 RKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAE 128
R+IPK G K R LGIPT+ADRVVQA+LKLVLEPIFE DF P SYGFRP RRA D IAE
Sbjct 105 RRIPKSNG--KTRSLGIPTLADRVVQASLKLVLEPIFEADFYPSSYGFRPRRRAQDAIAE 162
Query 129 IHLFGTQ--EYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLV 174
IH F ++ Y WV +ADI ACFD IDH L+ R+R RI DKRVL LV
Sbjct 163 IHKFTSRPLNYEWVFEADITACFDEIDHTGLIQRLRGRITDKRVLALV 210
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/91 (38%), Positives = 42/91 (47%), Gaps = 20/91 (21%)
Query 146 KACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRH-RWN-WTDVRRWLTDPTGRWHPIS 203
KA F +DH R+VNW RH + N T VRR+L W I
Sbjct 403 KATFSYVDHYAFW-------------RIVNWLNKRHPKLNKHTVVRRFLPG----WE-IR 444
Query 204 ADGITLFNPAAVPIRRYRYRGNTIPTPWTQA 234
+G+ F VP+ RYR+RG IPTPW A
Sbjct 445 TEGVEFFRACRVPVTRYRFRGTRIPTPWDSA 475
>gi|296169325|ref|ZP_06850953.1| RNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896001|gb|EFG75689.1| RNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=482
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/150 (61%), Positives = 102/150 (68%), Gaps = 5/150 (3%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
+AG+DG T R A+ L LR ELK FRP PVRE IPK G K+RRLGI T
Sbjct 64 SAGADG-TAPRSVGAAEAVGLLQRLREELKERIFRPDPVREVMIPKANG--KLRRLGIAT 120
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLF--GTQEYRWVLDADI 145
VADRVVQA+LKLVLEPIFE DF P +YGFRP RRA D IAEIH G++ Y WV + DI
Sbjct 121 VADRVVQASLKLVLEPIFEADFHPCAYGFRPGRRAQDAIAEIHHLASGSRAYHWVFEGDI 180
Query 146 KACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
ACFD I H+ LM RVR R+ DKRVL LV
Sbjct 181 TACFDEISHSALMGRVRRRVGDKRVLALVK 210
Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/64 (41%), Positives = 31/64 (49%), Gaps = 9/64 (14%)
Query 172 RLVNWQRIRHR---WNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIP 228
R+V W R RH W RR+L + W I +F P V + RYRYRG I
Sbjct 414 RVVTWMRKRHHGLAWG-VFHRRFLPN----WQ-IREGKTAMFRPQKVEVTRYRYRGTKII 467
Query 229 TPWT 232
TPWT
Sbjct 468 TPWT 471
>gi|345012103|ref|YP_004814457.1| RNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
gi|344038452|gb|AEM84177.1| RNA-directed DNA polymerase (Reverse transcriptase) [Streptomyces
violaceusniger Tu 4113]
Length=296
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/149 (56%), Positives = 100/149 (68%), Gaps = 4/149 (2%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG+T IE +G + L ELR+ L+ G F PV++ IPK G +VR LGIPT+
Sbjct 69 AGVDGVTRYHIEERLGVIPLLEELRSSLRDGSFTALPVKQAVIPKKNG--RVRYLGIPTL 126
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQ--EYRWVLDADIK 146
DRV Q ALKL+LEPIFE DF P SYG+RP RRA D IAEIH ++ Y WV++ DIK
Sbjct 127 RDRVAQMALKLILEPIFEVDFYPSSYGYRPGRRAQDAIAEIHHCTSRPSHYEWVIEGDIK 186
Query 147 ACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
ACFD +DH LM V RIKD++ LRLV
Sbjct 187 ACFDNVDHHVLMGLVAERIKDRKALRLVT 215
>gi|310819888|ref|YP_003952246.1| RNA-directed DNA polymerase [Stigmatella aurantiaca DW4/3-1]
gi|309392960|gb|ADO70419.1| RNA-directed DNA polymerase (reverse transcriptase) [Stigmatella
aurantiaca DW4/3-1]
Length=523
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/159 (52%), Positives = 103/159 (65%), Gaps = 14/159 (8%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DGLT ++ ++ G F++E+R EL+SG +RP PVR IPKPG K R LGIPTV
Sbjct 112 AGVDGLTARKVVAK-GVDTFIDEVRKELRSGAYRPCPVRRVLIPKPGQPWKFRPLGIPTV 170
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLF----------GTQ--- 135
DRVVQAA+K +LEPIFE DF P SYGFRP R AH + E+ GT+
Sbjct 171 RDRVVQAAVKNILEPIFEADFFPSSYGFRPGRSAHAALEELRKLLLPQHANTEAGTEIRL 230
Query 136 EYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLV 174
Y+W ++ DIK CFD IDH LM+RVR R+ D +V RL+
Sbjct 231 PYQWAIEGDIKGCFDNIDHHGLMERVRRRVGDTKVNRLI 269
>gi|310819782|ref|YP_003952140.1| RNA-directed DNA polymerase [Stigmatella aurantiaca DW4/3-1]
gi|309392854|gb|ADO70313.1| RNA-directed DNA polymerase (reverse transcriptase) [Stigmatella
aurantiaca DW4/3-1]
Length=548
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/159 (52%), Positives = 103/159 (65%), Gaps = 14/159 (8%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DGLT ++ ++ G F++E+R EL+SG +RP PVR IPKPG K R LGIPTV
Sbjct 58 AGVDGLTARKVVAK-GVDTFIDEVRKELRSGAYRPCPVRRVLIPKPGQPWKFRPLGIPTV 116
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLF----------GTQ--- 135
DRVVQAA+K +LEPIFE DF P SYGFRP R AH + E+ GT+
Sbjct 117 RDRVVQAAVKNILEPIFEADFFPSSYGFRPGRSAHAALEELRKLLLPQHANTEAGTEIRL 176
Query 136 EYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLV 174
Y+W ++ DIK CFD IDH LM+RVR R+ D +V RL+
Sbjct 177 PYQWAIEGDIKGCFDNIDHHGLMERVRRRVGDTKVNRLI 215
>gi|324323785|gb|ADY24829.1| hypothetical protein YBT020_28364 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324323928|gb|ADY24971.1| hypothetical protein YBT020_29086 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324256|gb|ADY19516.1| hypothetical protein YBT020_01320 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324325|gb|ADY19585.1| hypothetical protein YBT020_01665 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328515|gb|ADY23775.1| hypothetical protein YBT020_22735 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328637|gb|ADY23897.1| hypothetical protein YBT020_23345 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324329075|gb|ADY24335.1| hypothetical protein YBT020_25540 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length=432
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/147 (53%), Positives = 95/147 (65%), Gaps = 3/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
+ G DG T+ I + G FLNEL ELKS + PQ VR IPK G GK R LGIPT
Sbjct 59 SGGIDGQTIEEIVYQYGERNFLNELYVELKSKSYHPQAVRRTYIPK--GDGKQRPLGIPT 116
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
+ DRVVQ A KLV+EPIFE DF+ SYGFRP R AH I++I ++ W++D DI+
Sbjct 117 IKDRVVQMATKLVIEPIFEADFQECSYGFRPKRNAHQAISKIRK-TSKTSHWIVDVDIQG 175
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FD I+HA LM V RI D+RVL+L+
Sbjct 176 YFDNINHAKLMKLVERRISDRRVLKLI 202
>gi|284005911|ref|YP_003391729.1| RNA-directed DNA polymerase (Reverse transcriptase) [Spirosoma
linguale DSM 74]
gi|283821095|gb|ADB42930.1| RNA-directed DNA polymerase (Reverse transcriptase) [Spirosoma
linguale DSM 74]
Length=507
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/158 (48%), Positives = 98/158 (63%), Gaps = 13/158 (8%)
Query 30 GSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVA 89
G DG+TV I IG FL L+ +L++G ++P P R + IPK G GK R LGIPT+A
Sbjct 61 GIDGMTVGSIRQRIGEAPFLATLQQQLRTGSYKPSPCRRKLIPKAGKPGKFRPLGIPTIA 120
Query 90 DRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHL------FGTQE------- 136
DRVVQ+A+K VLEPI E F PVSYGFRP R H + I + Q+
Sbjct 121 DRVVQSAIKQVLEPILEARFWPVSYGFRPGRGCHGALEHIRMSMRPRKVNKQDNKRHEMP 180
Query 137 YRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLV 174
Y+WV++ DI++CFD IDH LMDR+R D+RV +L+
Sbjct 181 YQWVIEGDIQSCFDHIDHHQLMDRIRQHSADRRVNQLL 218
>gi|334319429|ref|YP_004551988.1| RNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099856|gb|AEG57865.1| RNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length=505
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/159 (48%), Positives = 97/159 (62%), Gaps = 13/159 (8%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG+TV RI + FL +L+ +L+SG +RP P R + IPK G G+ R LGIPT+
Sbjct 60 AGVDGMTVGRIRNR-SEHRFLVDLQADLRSGAYRPSPARRKLIPKAGKPGQFRPLGIPTI 118
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQE------------ 136
DRVVQ A K++LEPIFE F VSYGFRP R H + I +
Sbjct 119 RDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRRAALPQKRDEDTRRNRLP 178
Query 137 YRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
Y WV++ DIK CFD I+H L++R+R RI D+RV+RLV
Sbjct 179 YPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVG 217
>gi|16263485|ref|NP_436278.1| putative reverse transcriptase [Sinorhizobium meliloti 1021]
gi|14524181|gb|AAK65690.1| reverse transcriptase [Sinorhizobium meliloti 1021]
Length=505
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/159 (48%), Positives = 97/159 (62%), Gaps = 13/159 (8%)
Query 29 AGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTV 88
AG DG+TV RI + FL +L+ +L+SG +RP P R + IPK G G+ R LGIPT+
Sbjct 60 AGVDGMTVGRIRNR-SEHRFLVDLQADLRSGAYRPSPARRKLIPKAGKPGQFRPLGIPTI 118
Query 89 ADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQE------------ 136
DRVVQ A K++LEPIFE F VSYGFRP R H + I +
Sbjct 119 RDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRRAALPQKRDEDTRRNRLP 178
Query 137 YRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVN 175
Y WV++ DIK CFD I+H L++R+R RI D+RV+RLV
Sbjct 179 YPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVG 217
>gi|253577275|ref|ZP_04854593.1| RNA-directed DNA polymerase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843279|gb|EES71309.1| RNA-directed DNA polymerase [Paenibacillus sp. oral taxon 786
str. D14]
Length=430
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/147 (49%), Positives = 94/147 (64%), Gaps = 3/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
+AG DG T+A IE + G + F+ E + LK G++ PQPVR IPK G K+R LGIPT
Sbjct 58 SAGVDGETLADIEKQ-GEMRFVLECQRLLKEGKYHPQPVRRHYIPKKDG--KLRPLGIPT 114
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DRV+Q A KLV+EPIFE DF+ S+GFRP R A + I ++ WV+D DI+
Sbjct 115 VRDRVIQMATKLVMEPIFEADFQDTSFGFRPKRSAKQALERIRKACNRKGNWVVDVDIQG 174
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FD I+ LM + RI D+R+L+LV
Sbjct 175 YFDNINQEKLMKLIEMRISDRRILKLV 201
>gi|51892689|ref|YP_075380.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51856378|dbj|BAD40536.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 94/147 (64%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I A +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGEDGVPTERLRDQIRAA--WERIREELLRGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|51892932|ref|YP_075623.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51856621|dbj|BAD40779.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 94/147 (64%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I A +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQIRAE--WERIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|302392022|ref|YP_003827842.1| RNA-directed DNA polymerase (Reverse transcriptase) [Acetohalobium
arabaticum DSM 5501]
gi|302204099|gb|ADL12777.1| RNA-directed DNA polymerase (Reverse transcriptase) [Acetohalobium
arabaticum DSM 5501]
Length=430
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/147 (46%), Positives = 97/147 (66%), Gaps = 3/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
++G DG+T IE IG L++L ++R EL + ++PQ R+++IPK G GKVR LGIPT
Sbjct 53 SSGVDGITFEDIEG-IGVLKYLKKIREELVNETYKPQENRKQEIPK--GNGKVRVLGIPT 109
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
+ DR+VQ ALKL+LEPIFE DF+ SYG+RP R AH + +I R V+D D+ +
Sbjct 110 IKDRIVQGALKLILEPIFEADFQESSYGYRPKRTAHQAVKKIEKAIVSGKRKVIDLDLSS 169
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FD + H L+ ++ R+ DK V+ L+
Sbjct 170 YFDTVKHHILLAKIAKRVIDKEVMHLI 196
>gi|51892122|ref|YP_074813.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51855811|dbj|BAD39969.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|51893118|ref|YP_075809.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51856807|dbj|BAD40965.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=328
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|224369732|ref|YP_002603896.1| LtrA [Desulfobacterium autotrophicum HRM2]
gi|223692449|gb|ACN15732.1| LtrA [Desulfobacterium autotrophicum HRM2]
Length=215
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/149 (47%), Positives = 95/149 (64%), Gaps = 7/149 (4%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
AAG DG T+ + + L+ L ELK+ Q+R QPV+ +IPKPGG +R+LGIPT
Sbjct 31 AAGIDGQTIGNFDKS--REKNLSILINELKAKQYRTQPVKRVEIPKPGG--AIRKLGIPT 86
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEY--RWVLDADI 145
V DRVVQ L+ +LEPIF+ F P SYG+RP R H I++ LF +EY +WV+D D+
Sbjct 87 VRDRVVQQVLREILEPIFDPGFHPSSYGYRPGRSCHHAISKAQLF-IREYGFKWVVDMDL 145
Query 146 KACFDRIDHADLMDRVRHRIKDKRVLRLV 174
CFD +DH ++ +R R+ D +L LV
Sbjct 146 SKCFDTLDHEIILKSIRKRVTDGSILNLV 174
>gi|51892032|ref|YP_074723.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51855721|dbj|BAD39879.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|51891882|ref|YP_074573.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51892262|ref|YP_074953.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51855571|dbj|BAD39729.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51855951|dbj|BAD40109.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|51893870|ref|YP_076561.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51857559|dbj|BAD41717.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|51892018|ref|YP_074709.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
gi|51855707|dbj|BAD39865.1| group II intron-encoding maturase [Symbiobacterium thermophilum
IAM 14863]
Length=429
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|51892893|ref|YP_075584.1| group II intron-encoding maturase variant [Symbiobacterium thermophilum
IAM 14863]
gi|51856582|dbj|BAD40740.1| group II intron-encoding maturase variant [Symbiobacterium thermophilum
IAM 14863]
Length=269
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-SRIREELLQGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|302038148|ref|YP_003798470.1| putative reverse transcriptase (fragment) [Candidatus Nitrospira
defluvii]
gi|300606212|emb|CBK42545.1| putative Reverse transcriptase (fragment) [Candidatus Nitrospira
defluvii]
Length=260
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/154 (46%), Positives = 89/154 (58%), Gaps = 13/154 (8%)
Query 34 LTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVADRVV 93
+TV I + G ++ EL L+SG + P P R + IPKPG G+ R LGIPTV DRVV
Sbjct 1 MTVGSIRQQQGEGAYVGELHRSLRSGAYAPSPCRRKLIPKPGKPGQFRPLGIPTVTDRVV 60
Query 94 QAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLF----------GTQE---YRWV 140
QAA+K LEPI E F VSYGFRP R H + I + G + Y+WV
Sbjct 61 QAAIKQFLEPILEARFWHVSYGFRPGRGCHGALEHIRMATRPRKTSKRDGKRHDTPYQWV 120
Query 141 LDADIKACFDRIDHADLMDRVRHRIKDKRVLRLV 174
++ DIK CF+ IDH LM+ VR D+RV RL+
Sbjct 121 VEGDIKGCFEHIDHHLLMNHVRQHCVDRRVNRLL 154
>gi|51893864|ref|YP_076555.1| group II intron-encoding maturase, N-terminally truncated [Symbiobacterium
thermophilum IAM 14863]
gi|51857553|dbj|BAD41711.1| group II intron-encoding maturase, N-terminally truncated [Symbiobacterium
thermophilum IAM 14863]
Length=420
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/147 (50%), Positives = 94/147 (64%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I + +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 14 APGEDGVPTERLRDQIRSE--WERIREELLRGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 69
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 70 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 129
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 130 FFDRVNHDVLMARVARRVTDKRVLRLI 156
>gi|77406984|ref|ZP_00784000.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae H36B]
gi|77174408|gb|EAO77261.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae H36B]
Length=439
Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/148 (46%), Positives = 98/148 (67%), Gaps = 3/148 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
+AG D T+ IE+ G +FL+E+ +L++ +++P+ V+ IPK G K R LGIPT
Sbjct 58 SAGIDDFTIEEIEA-YGVQKFLDEIEDQLRNKKYQPKAVKRVYIPKANG--KKRPLGIPT 114
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DRVVQ A+K+V+EPIFE DF+ SYGFRP R A+ I EI+ + WV+DAD+K
Sbjct 115 VRDRVVQTAVKIVIEPIFEADFQKFSYGFRPKRSANQAIREIYKYLNYGCEWVIDADLKG 174
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLVN 175
FD I H L+ V+ R+ DK +++L++
Sbjct 175 YFDTIPHDKLLLLVKERVTDKSIIKLLS 202
>gi|315645325|ref|ZP_07898450.1| reverse transcriptase (RNA-dependent DNA polymerase) [Paenibacillus
vortex V453]
gi|315279367|gb|EFU42673.1| reverse transcriptase (RNA-dependent DNA polymerase) [Paenibacillus
vortex V453]
Length=353
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/147 (47%), Positives = 94/147 (64%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+TVA +++ + +L + TEL G +RP PV+ +IPKPGG VR LGIPT
Sbjct 73 APGVDGVTVAELQACLKT--YLETVETELLVGAYRPAPVKRVEIPKPGG--GVRLLGIPT 128
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR +Q AL V+ PI + F SYGFRP +RAHD + + + RWV+D D++
Sbjct 129 VMDRFLQQALLQVMNPILDASFSWYSYGFRPGKRAHDAVKQAQRYIQSGLRWVVDMDLEK 188
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV ++ DKRVL+L+
Sbjct 189 FFDRVNHDILMARVARKVTDKRVLKLI 215
>gi|22536745|ref|NP_687596.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae 2603V/R]
gi|22533588|gb|AAM99468.1|AE014217_23 prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae 2603V/R]
Length=439
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/148 (46%), Positives = 98/148 (67%), Gaps = 3/148 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
+AG D T+ IE+ G +FL+E+ +L++ +++P+ V+ IPK G K R LGIPT
Sbjct 58 SAGIDDFTIEEIEA-YGVQKFLDEIEDQLRNKKYQPKAVKRVYIPKANG--KKRPLGIPT 114
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DRVVQ A+K+V+EPIFE DF+ SYGFRP R A+ I EI+ + WV+DAD+K
Sbjct 115 VRDRVVQTAVKIVIEPIFEADFQEFSYGFRPKRSANQAIREIYKYLNYGCEWVIDADLKG 174
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLVN 175
FD I H L+ V+ R+ DK +++L++
Sbjct 175 YFDTIPHDKLLLLVKERVTDKSIIKLLS 202
>gi|51893418|ref|YP_076109.1| hypothetical protein STH2280 [Symbiobacterium thermophilum IAM
14863]
gi|51857107|dbj|BAD41265.1| unnamed protein product [Symbiobacterium thermophilum IAM 14863]
Length=248
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/147 (51%), Positives = 96/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG+ R+ +I +E+ +R EL G +RPQPVR +IPKPGG GK R LGIPT
Sbjct 23 APGVDGVPTERLRDQI-RVEW-ERIREELLRGTYRPQPVRRVEIPKPGG-GK-RMLGIPT 78
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL VL PIF+ F SYGFRP RR HD + + + + Y WV+D D++
Sbjct 79 VMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEK 138
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV R+ DKRVLRL+
Sbjct 139 FFDRVNHDVLMARVARRVTDKRVLRLI 165
>gi|116750621|ref|YP_847308.1| RNA-directed DNA polymerase [Syntrophobacter fumaroxidans MPOB]
gi|116699685|gb|ABK18873.1| RNA-directed DNA polymerase (Reverse transcriptase) [Syntrophobacter
fumaroxidans MPOB]
Length=467
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/147 (45%), Positives = 99/147 (68%), Gaps = 3/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
+AG DG++V + + + E ++ EL G+++PQPVR+ +IPKPGG G +R+LGIPT
Sbjct 71 SAGVDGVSVDALRACL--REHWPRIKEELLEGRYQPQPVRKVEIPKPGGKG-MRQLGIPT 127
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q AL V++PIF+ DF SYGFRP R AH + + + RWV+D D++
Sbjct 128 VMDRLIQQALNQVMQPIFDPDFSESSYGFRPGRSAHQAVLRAREYAATDRRWVVDMDLEK 187
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM R+ +I D+RVL+L+
Sbjct 188 FFDRVNHDILMARLARKIADRRVLQLI 214
>gi|344200410|ref|YP_004784736.1| RNA-directed DNA polymerase [Acidithiobacillus ferrivorans SS3]
gi|343775854|gb|AEM48410.1| RNA-directed DNA polymerase (Reverse transcriptase) [Acidithiobacillus
ferrivorans SS3]
Length=408
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/165 (49%), Positives = 101/165 (62%), Gaps = 9/165 (5%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRR-LGIP 86
AAG D ++V R G +L EL L+ G +RPQPVR IPK GK RR LGIP
Sbjct 76 AAGVDRMSVERFAQ--GRDCYLAELAQALRDGSYRPQPVRRVYIPK----GKGRRPLGIP 129
Query 87 TVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIK 146
V DRVVQAALKLV+EPIFE +FEP SYGFR D + E+ + + WV+DAD++
Sbjct 130 AVKDRVVQAALKLVIEPIFEHEFEPRSYGFRQGLGCKDALREVDQYLKAGHCWVVDADLQ 189
Query 147 ACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRW 191
+ FD I HA L+ +V +RI D VL LV QR + D++RW
Sbjct 190 SYFDTIPHASLLAKVGNRIADGGVLELV--QRFLKQDIMEDMKRW 232
>gi|261418654|ref|YP_003252336.1| RNA-directed DNA polymerase (Reverse transcriptase) [Geobacillus
sp. Y412MC61]
gi|261418862|ref|YP_003252544.1| RNA-directed DNA polymerase (Reverse transcriptase) [Geobacillus
sp. Y412MC61]
gi|261419501|ref|YP_003253183.1| RNA-directed DNA polymerase (Reverse transcriptase) [Geobacillus
sp. Y412MC61]
7 more sequence titles
Length=420
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/147 (46%), Positives = 97/147 (66%), Gaps = 4/147 (2%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G DG++ ++ I A + +R +L +G +RP PVR +IPKPGG R+LGIPT
Sbjct 26 APGIDGVSTDQLRDYIRA--HWSTIRAQLLAGTYRPAPVRRVEIPKPGG--GTRQLGIPT 81
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
V DR++Q A+ L PIF+ DF P S+GFRP R AHD + + + + YR+V+D D++
Sbjct 82 VVDRLIQQAILQELTPIFDPDFSPSSFGFRPGRNAHDAVRQAQGYIQEGYRYVVDMDLEK 141
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
FDR++H LM RV ++KDKRVL+L+
Sbjct 142 FFDRVNHDILMSRVARKVKDKRVLKLI 168
>gi|147678747|ref|YP_001212962.1| retron-type reverse transcriptase [Pelotomaculum thermopropionicum
SI]
gi|146274844|dbj|BAF60593.1| retron-type reverse transcriptase [Pelotomaculum thermopropionicum
SI]
Length=428
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/147 (47%), Positives = 87/147 (60%), Gaps = 2/147 (1%)
Query 28 AAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPT 87
A G+DG + IE ++G FL E+ EL++G +RP PVR I KP G R LGIPT
Sbjct 57 APGADGQSFKDIEEKVGVERFLKEIAEELRNGTYRPMPVRRVYILKPDG--SQRPLGIPT 114
Query 88 VADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKA 147
+ DR+ Q A V++PIFE DF SYGFRP R AH I I Q + V DAD+
Sbjct 115 IKDRIAQMACLTVIQPIFEADFLDCSYGFRPKRNAHQAIGAITENIKQGFTAVYDADLTK 174
Query 148 CFDRIDHADLMDRVRHRIKDKRVLRLV 174
CFD I H +MD + RI D +VLRL+
Sbjct 175 CFDSIQHRLIMDSLAERITDGKVLRLI 201
Lambda K H
0.323 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 316387145800
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40