BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0079
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607221|ref|NP_214593.1| hypothetical protein Rv0079 [Mycoba... 540 8e-152
gi|298527471|ref|ZP_07014880.1| conserved hypothetical protein [... 538 3e-151
gi|253796997|ref|YP_003029998.1| hypothetical protein TBMG_00080... 538 4e-151
gi|340625114|ref|YP_004743566.1| hypothetical protein MCAN_00801... 537 7e-151
gi|308369297|ref|ZP_07417242.2| hypothetical protein TMBG_02545 ... 381 5e-104
gi|289764195|ref|ZP_06523573.1| ribosome-associated protein Y [M... 381 5e-104
gi|183983685|ref|YP_001851976.1| hypothetical protein MMAR_3705 ... 331 9e-89
gi|240169933|ref|ZP_04748592.1| hypothetical protein MkanA1_1149... 328 6e-88
gi|118618918|ref|YP_907250.1| hypothetical protein MUL_3647 [Myc... 300 2e-79
gi|54023877|ref|YP_118119.1| hypothetical protein nfa19090 [Noca... 155 9e-36
gi|296268822|ref|YP_003651454.1| hypothetical protein Tbis_0837 ... 125 5e-27
gi|311894102|dbj|BAJ26510.1| hypothetical protein KSE_06700 [Kit... 121 1e-25
gi|311894218|dbj|BAJ26626.1| hypothetical protein KSE_07870 [Kit... 118 1e-24
gi|120402388|ref|YP_952217.1| hypothetical protein Mvan_1377 [My... 117 2e-24
gi|256376081|ref|YP_003099741.1| hypothetical protein Amir_1947 ... 114 1e-23
gi|145225576|ref|YP_001136254.1| hypothetical protein Mflv_5000 ... 112 5e-23
gi|296170915|ref|ZP_06852452.1| conserved hypothetical protein [... 111 1e-22
gi|315445929|ref|YP_004078808.1| hypothetical protein Mspyr1_441... 111 1e-22
gi|291006801|ref|ZP_06564774.1| hypothetical protein SeryN2_1995... 110 3e-22
gi|183980965|ref|YP_001849256.1| hypothetical protein MMAR_0944 ... 108 1e-21
gi|118616491|ref|YP_904823.1| hypothetical protein MUL_0695 [Myc... 107 2e-21
gi|296169074|ref|ZP_06850734.1| conserved hypothetical protein [... 107 2e-21
gi|108798067|ref|YP_638264.1| hypothetical protein Mmcs_1095 [My... 104 1e-20
gi|119867163|ref|YP_937115.1| hypothetical protein Mkms_1112 [My... 104 1e-20
gi|240169274|ref|ZP_04747933.1| hypothetical protein MkanA1_0816... 103 2e-20
gi|134098960|ref|YP_001104621.1| hypothetical protein SACE_2397 ... 99.0 6e-19
gi|118468280|ref|YP_888224.1| hypothetical protein MSMEG_3935 [M... 91.3 1e-16
gi|336054488|ref|YP_004562775.1| Ribosome-associated inhibitor p... 44.7 0.017
gi|289423900|ref|ZP_06425693.1| SSU ribosomal protein S30P [Pept... 43.9 0.027
gi|227903554|ref|ZP_04021359.1| ribosome-associated inhibitor pr... 43.5 0.038
gi|58336994|ref|YP_193579.1| phosphate starvation inducible prot... 43.5 0.038
gi|315037898|ref|YP_004031466.1| phosphate starvation inducible ... 43.1 0.039
gi|242037341|ref|XP_002466065.1| hypothetical protein SORBIDRAFT... 42.7 0.057
gi|226528966|ref|NP_001151285.1| plastid-specific 30S ribosomal ... 42.7 0.065
gi|255634767|gb|ACU17745.1| unknown [Glycine max] 42.4 0.083
gi|307243698|ref|ZP_07525838.1| ribosomal subunit interface prot... 42.4 0.086
gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSr... 41.2 0.16
gi|223994401|ref|XP_002286884.1| light-repressed protein a [Thal... 41.2 0.18
gi|77919533|ref|YP_357348.1| ribosome-associated protein Y (PSrp... 41.2 0.19
gi|296111497|ref|YP_003621879.1| putative phosphate starvation i... 40.8 0.19
gi|313472387|ref|ZP_07812879.1| ribosomal subunit interface prot... 40.8 0.21
gi|218194143|gb|EEC76570.1| hypothetical protein OsI_14401 [Oryz... 40.8 0.21
gi|115456699|ref|NP_001051950.1| Os03g0856500 [Oryza sativa Japo... 40.8 0.21
gi|323466943|gb|ADX70630.1| Ribosome-associated factor Y [Lactob... 40.8 0.23
gi|260102490|ref|ZP_05752727.1| ribosomal subunit interface prot... 40.8 0.23
gi|161507198|ref|YP_001577152.1| putative phosphate starvation-i... 40.8 0.23
gi|156743010|ref|YP_001433139.1| sigma 54 modulation protein/rib... 40.8 0.23
gi|238854886|ref|ZP_04645216.1| ribosome-associated protein Y [L... 40.8 0.24
gi|256851472|ref|ZP_05556861.1| sigma 54 modulation protein/SSU ... 40.4 0.26
gi|313123315|ref|YP_004033574.1| ribosome-associated factor y [L... 40.4 0.27
>gi|15607221|ref|NP_214593.1| hypothetical protein Rv0079 [Mycobacterium tuberculosis H37Rv]
gi|15839460|ref|NP_334497.1| hypothetical protein MT0086 [Mycobacterium tuberculosis CDC1551]
gi|31791257|ref|NP_853750.1| hypothetical protein Mb0082 [Mycobacterium bovis AF2122/97]
65 more sequence titles
Length=273
Score = 540 bits (1391), Expect = 8e-152, Method: Compositional matrix adjust.
Identities = 272/273 (99%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 1 VEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
+EPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR
Sbjct 1 MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
Query 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP
Sbjct 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
Query 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG
Sbjct 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
Query 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT
Sbjct 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
Query 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA
Sbjct 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
>gi|298527471|ref|ZP_07014880.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298497265|gb|EFI32559.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=273
Score = 538 bits (1386), Expect = 3e-151, Method: Compositional matrix adjust.
Identities = 271/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 1 VEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
+EPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR
Sbjct 1 MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
Query 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP
Sbjct 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
Query 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG
Sbjct 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
Query 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVL EAAAVDRAREHGLPFLFFT
Sbjct 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLAEAAAVDRAREHGLPFLFFT 240
Query 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA
Sbjct 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
>gi|253796997|ref|YP_003029998.1| hypothetical protein TBMG_00080 [Mycobacterium tuberculosis KZN
1435]
gi|289552330|ref|ZP_06441540.1| hypothetical protein TBXG_00080 [Mycobacterium tuberculosis KZN
605]
gi|297632552|ref|ZP_06950332.1| hypothetical protein MtubK4_00420 [Mycobacterium tuberculosis
KZN 4207]
gi|297729525|ref|ZP_06958643.1| hypothetical protein MtubKR_00440 [Mycobacterium tuberculosis
KZN R506]
gi|313656853|ref|ZP_07813733.1| hypothetical protein MtubKV_00435 [Mycobacterium tuberculosis
KZN V2475]
gi|253318500|gb|ACT23103.1| hypothetical protein TBMG_00080 [Mycobacterium tuberculosis KZN
1435]
gi|289436962|gb|EFD19455.1| hypothetical protein TBXG_00080 [Mycobacterium tuberculosis KZN
605]
gi|328456786|gb|AEB02209.1| hypothetical protein TBSG_00080 [Mycobacterium tuberculosis KZN
4207]
Length=273
Score = 538 bits (1385), Expect = 4e-151, Method: Compositional matrix adjust.
Identities = 271/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 1 VEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
+EPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR
Sbjct 1 MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
Query 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
LTMANCADGPTLVQINLQVGDTPLRAQAATAGID LRPALIRLDRQIVRASAQWCPRPWP
Sbjct 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDHLRPALIRLDRQIVRASAQWCPRPWP 120
Query 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG
Sbjct 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
Query 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT
Sbjct 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
Query 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA
Sbjct 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
>gi|340625114|ref|YP_004743566.1| hypothetical protein MCAN_00801 [Mycobacterium canettii CIPT
140010059]
gi|340003304|emb|CCC42421.1| hypothetical protein MCAN_00801 [Mycobacterium canettii CIPT
140010059]
Length=273
Score = 537 bits (1383), Expect = 7e-151, Method: Compositional matrix adjust.
Identities = 271/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 1 VEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
+EPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR
Sbjct 1 MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
Query 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP
Sbjct 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
Query 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
DRPRRRLTT AEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG
Sbjct 121 DRPRRRLTTLAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
Query 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT
Sbjct 181 PSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFT 240
Query 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA
Sbjct 241 DQATGRGQLLYSRYDGNLGLITPTGDGVADGLA 273
>gi|308369297|ref|ZP_07417242.2| hypothetical protein TMBG_02545 [Mycobacterium tuberculosis SUMu002]
gi|308328108|gb|EFP16959.1| hypothetical protein TMBG_02545 [Mycobacterium tuberculosis SUMu002]
Length=265
Score = 381 bits (979), Expect = 5e-104, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 1 VEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
+EPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR
Sbjct 1 MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVR 60
Query 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP
Sbjct 61 LTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWP 120
Query 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG
Sbjct 121 DRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAG 180
Query 181 PSGLRLARQHHVFPP 195
PSGLRLARQHHVFPP
Sbjct 181 PSGLRLARQHHVFPP 195
>gi|289764195|ref|ZP_06523573.1| ribosome-associated protein Y [Mycobacterium tuberculosis GM
1503]
gi|289711701|gb|EFD75717.1| ribosome-associated protein Y [Mycobacterium tuberculosis GM
1503]
Length=194
Score = 381 bits (979), Expect = 5e-104, Method: Compositional matrix adjust.
Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)
Query 83 PLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTTPAEALVTRRKPVV 142
PLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTTPAEALVTRRKPVV
Sbjct 4 PLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTTPAEALVTRRKPVV 63
Query 143 LRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRA 202
LRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRA
Sbjct 64 LRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRA 123
Query 203 PAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLIT 262
PAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLIT
Sbjct 124 PAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLIT 183
Query 263 PTGDGVADGLA 273
PTGDGVADGLA
Sbjct 184 PTGDGVADGLA 194
>gi|183983685|ref|YP_001851976.1| hypothetical protein MMAR_3705 [Mycobacterium marinum M]
gi|183177011|gb|ACC42121.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=267
Score = 331 bits (848), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 167/260 (65%), Positives = 192/260 (74%), Gaps = 0/260 (0%)
Query 4 KRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVRLTM 63
KR R V AP P REFPDV V S +A+ E++ARAVG++L R + GGARVRL
Sbjct 4 KRGRCAVYAPRPWSVREFPDVTVLSSASVSAAHGEQVARAVGQILVHREIVGGARVRLKT 63
Query 64 ANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRP 123
C GP +VQ+NL+VG+ P R A T GIDDL PAL+RLDR IVR QW PRPWPD
Sbjct 64 GACGRGPMVVQVNLRVGELPARVLAVTPGIDDLTPALLRLDRHIVRMYDQWRPRPWPDLT 123
Query 124 RRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSG 183
RRRL +A + RRKPV L+ +TPL A+A MDAMDYD H+FTDAETGEDAVVYRAGPSG
Sbjct 124 RRRLFVRPDAAIARRKPVSLQCSTPLAAVAVMDAMDYDAHVFTDAETGEDAVVYRAGPSG 183
Query 184 LRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQA 243
LRLARQ HV+PPGW+ + + PPVPLIVNSRPT LTE A+ RAREHGL LFFTD A
Sbjct 184 LRLARQRHVYPPGWAWSPSNSAPPVPLIVNSRPTLALTEEEALRRAREHGLQLLFFTDSA 243
Query 244 TGRGQLLYSRYDGNLGLITP 263
TGRGQLLY RYDG+LGL+ P
Sbjct 244 TGRGQLLYPRYDGDLGLVGP 263
>gi|240169933|ref|ZP_04748592.1| hypothetical protein MkanA1_11499 [Mycobacterium kansasii ATCC
12478]
Length=258
Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 167/254 (66%), Positives = 187/254 (74%), Gaps = 0/254 (0%)
Query 10 VCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVRLTMANCADG 69
+ A +P REFPD+ V SG R +ASQ E +ARAVGRVLA ++GGARVRL C G
Sbjct 1 MYALKPWSVREFPDLTVLSGPRVSASQGEYVARAVGRVLAHHEISGGARVRLKTGACGRG 60
Query 70 PTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTT 129
P ++Q+NL+VG+ P R A T GIDDL PAL+RLDR I R QWCPRPWPD RR LT
Sbjct 61 PLIMQVNLRVGELPARVLAVTTGIDDLTPALLRLDRHIARMYGQWCPRPWPDPTRRLLTI 120
Query 130 PAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQ 189
A+V RRK VVL+R TPL+A+A MDAMDYD HLFTD ETGEDAVVYRAGPSGLRLARQ
Sbjct 121 TTGAVVLRRKSVVLQRTTPLEAVAVMDAMDYDAHLFTDVETGEDAVVYRAGPSGLRLARQ 180
Query 190 HHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQL 249
HV+ PGW+ + P VPLIVNSR TP LTE AAV RA EH L LFFTD ATGRG L
Sbjct 181 RHVYLPGWAWSSSTGEPAVPLIVNSRQTPCLTEDAAVHRAGEHRLQLLFFTDPATGRGNL 240
Query 250 LYSRYDGNLGLITP 263
LY RYDGNLGLI P
Sbjct 241 LYPRYDGNLGLIAP 254
>gi|118618918|ref|YP_907250.1| hypothetical protein MUL_3647 [Mycobacterium ulcerans Agy99]
gi|118571028|gb|ABL05779.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=248
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/245 (63%), Positives = 176/245 (72%), Gaps = 0/245 (0%)
Query 4 KRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVRLTM 63
KR R V AP P R FPDV V S +A+ E++ARAVG++L R + GGARVRL
Sbjct 4 KRGRCAVYAPRPWSVRGFPDVTVLSSASVSAAHGEQVARAVGQILVHREIVGGARVRLKT 63
Query 64 ANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRP 123
C GP VQ+NL+VG+ P R A T GIDDL PAL+RLDR IVR QW PRPWPD
Sbjct 64 GACGRGPMEVQVNLRVGELPARVLAVTPGIDDLTPALLRLDRHIVRMYDQWRPRPWPDLT 123
Query 124 RRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSG 183
RRRL +A + RRKPV L+ +TPL A+A MDAMDYD H+FTDAETGEDAVVYRAGPSG
Sbjct 124 RRRLFVRPDAAIARRKPVSLQCSTPLAAVAVMDAMDYDAHVFTDAETGEDAVVYRAGPSG 183
Query 184 LRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQA 243
LRLARQ HV+PPGW+ + + PPV LIVNSRPT LTE A+ RAREHGL LFFTD A
Sbjct 184 LRLARQRHVYPPGWAWSPSNSAPPVLLIVNSRPTLALTEEEALRRAREHGLQLLFFTDSA 243
Query 244 TGRGQ 248
TGRGQ
Sbjct 244 TGRGQ 248
>gi|54023877|ref|YP_118119.1| hypothetical protein nfa19090 [Nocardia farcinica IFM 10152]
gi|54015385|dbj|BAD56755.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=258
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/245 (44%), Positives = 136/245 (56%), Gaps = 9/245 (3%)
Query 22 PDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVRLTMANCADGPTLVQINLQVGD 81
PD+AV + G + R RA+GRVL + ARVR+T D P +VQ N+++
Sbjct 19 PDLAVTTRGDVAPADVTRAVRAIGRVLRRHHLDLPARVRITAPADRDRPNVVQANVRLPH 78
Query 82 TPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPD--RPRRRLTTPAEALVTRRK 139
TP R Q + A+ RLDRQ+ R +A+ R WPD RP PA +V RRK
Sbjct 79 TPARVQVTGPRGFAVTFAVERLDRQLTRLAARRG-REWPDPARPPLAEAGPARPIV-RRK 136
Query 140 PVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSR 199
L TP +A+ MDAMDYD HLFTD++TGEDA+V A P +RL RQ P
Sbjct 137 RCALLIGTPAEAVEMMDAMDYDAHLFTDSDTGEDALVSWAEPRAVRLTRQCDTTVPA--- 193
Query 200 CRAP-AGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNL 258
R P G + + V P PVLTE+ A HGLP LFFTD T RG+LLY RYDG+L
Sbjct 194 -RTPRVGEALAVHVRPEPAPVLTESEAAAHLCRHGLPHLFFTDVRTHRGRLLYRRYDGDL 252
Query 259 GLITP 263
++ P
Sbjct 253 TIVVP 257
>gi|296268822|ref|YP_003651454.1| hypothetical protein Tbis_0837 [Thermobispora bispora DSM 43833]
gi|296091609|gb|ADG87561.1| hypothetical protein Tbis_0837 [Thermobispora bispora DSM 43833]
Length=269
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/267 (40%), Positives = 133/267 (50%), Gaps = 36/267 (13%)
Query 23 DVAVFSGGRANASQAERLARAVGRV-LADRGVTGGARVRLTMAN--CADGPTLVQINLQV 79
DV V + G + + A+ V LA ARV+L+ D P + Q N+ V
Sbjct 15 DVQVVTRGEVPRAAVDEAKEAIAAVTLAAHEPVLYARVKLSKLPDPAVDRPYVAQANVDV 74
Query 80 GDTPLRAQAATAG----IDDLRPALIRLDRQIVRASAQW------CPR----PW-----P 120
LRAQA ID+L+ RL ++ R S W PR W P
Sbjct 75 NGRLLRAQAVAESMHEAIDELQD---RLRVRLRRTSRDWESLRGRVPRDVDEEWRRSSPP 131
Query 121 DRPRRRLTTPAEA-LVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRA 179
+P PAE + RRK L ATP +A M+ +DYD HLFT+A+TGED+V+YRA
Sbjct 132 RKPLPYFPRPAEERQIVRRKTYELAVATPDEAAFDMEQLDYDFHLFTEADTGEDSVIYRA 191
Query 180 GPSGLRLARQHHVFPPGWSRCRAPAGP-PVPLIVNSRPTPVLTEAAAVDRAREHGLPFLF 238
G RLA+ H P R GP +PL V+ P PVLT A+DR G PF+F
Sbjct 192 D-GGYRLAQVH----PRPDRL----GPVAIPLTVDPDPAPVLTVRQAIDRLELSGEPFVF 242
Query 239 FTDQATGRGQLLYSRYDGNLGLITPTG 265
F D TGRG LLY RYDG+ GLITP+
Sbjct 243 FADAETGRGCLLYHRYDGHYGLITPSA 269
>gi|311894102|dbj|BAJ26510.1| hypothetical protein KSE_06700 [Kitasatospora setae KM-6054]
Length=257
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/226 (42%), Positives = 116/226 (52%), Gaps = 33/226 (14%)
Query 58 RVRLTM-ANCADG-PTLVQINLQVGDTPLRAQAATA----GIDDLRPALIRLDRQIVRAS 111
RVRL AN A P+L Q+ + + P+RA A A +D L+ L ++
Sbjct 47 RVRLAQEANHAVARPSLAQVVVDLNGRPVRAHVAAATMREAVDLLQDRLAARLARLRHHR 106
Query 112 A--QWCPRPWPD-----RPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHL 164
+ P P+ RP RR+ P E V R K L R PL A+ ++AMDYD HL
Sbjct 107 RGPEHRPEHRPEQRPAHRPERRVRPPEERQVVRHKSYGLARRAPLDAVGELEAMDYDFHL 166
Query 165 FTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGP----PVPLIVNSR-PTPV 219
FTDA++G ++VVYR G RL A AGP VP +V SR PV
Sbjct 167 FTDADSGRESVVYRGTAGGYRL---------------ASAGPLPAAAVPGLVASRLGVPV 211
Query 220 LTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTG 265
LT A R GLPF+FFTD ATGRG +LY RYDG+ GLITP G
Sbjct 212 LTPGQARGRLDLSGLPFVFFTDAATGRGNVLYHRYDGHYGLITPAG 257
>gi|311894218|dbj|BAJ26626.1| hypothetical protein KSE_07870 [Kitasatospora setae KM-6054]
Length=247
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/215 (43%), Positives = 112/215 (53%), Gaps = 25/215 (11%)
Query 58 RVRLTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRA-SAQWCP 116
RVRLT A G L Q+N +V +R Q A + L R+ VRA SA W P
Sbjct 45 RVRLT---AAPGRVLAQVNAEVDGRRVRVQLAARTAGEAAERLADGLRRRVRAVSASWRP 101
Query 117 RPWP--DRPRRRLTTPAEAL---VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETG 171
RPWP + T PA A + R K L +P A+ +DAMDYD+HLFTD T
Sbjct 102 RPWPSAEPAAEPGTGPAAARSGRIVRVKSPALVWCSPDAAVRTLDAMDYDIHLFTDPATE 161
Query 172 EDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPP----VPLIVNSRPTPVLTEAAAVD 227
DAVV+R GP+G RLAR PAGPP PL ++ P P LT+ A
Sbjct 162 TDAVVHRIGPTGYRLART------------LPAGPPHRPATPLTLSPLPAPPLTDRQAAA 209
Query 228 RAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLIT 262
R LP+LFF D AT RG++LY R DG+L L+T
Sbjct 210 RLTTADLPYLFFADPATRRGRVLYRRLDGHLALLT 244
>gi|120402388|ref|YP_952217.1| hypothetical protein Mvan_1377 [Mycobacterium vanbaalenii PYR-1]
gi|119955206|gb|ABM12211.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=264
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/228 (40%), Positives = 117/228 (52%), Gaps = 28/228 (12%)
Query 57 ARVRLTMAN--CADGPTLVQINLQVGDTPLRAQA----ATAGIDDLRPALIRLDRQIVRA 110
ARVRLT ++ + P + Q NL V P+RAQ A ID L RL R++
Sbjct 46 ARVRLTRSHDPAVERPVVAQGNLDVQGRPVRAQVEADTAQEAIDKLES---RLRRRLEHL 102
Query 111 SAQW-CPR------PW-----PDRPRRRLT-TPAEALVTRRKPVVLRRATPLQAIAAMDA 157
+ +W PR PW P R R +T + E + RRK + T A+A M+
Sbjct 103 AERWEAPRGPEAAPPWRNGEEPARAPRSVTRSTGEPRIIRRKSFAMAPCTIDDAVAEMEL 162
Query 158 MDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPT 217
+DYD HLFT++ + VVYR GP+G R+A + P + AP V ++ +P
Sbjct 163 LDYDFHLFTESGSETAGVVYRGGPTGYRVA----LVAPAVADEVAPYQDSV--TISPQPA 216
Query 218 PVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTG 265
P L E A++R GLPFLFF D A GR LLY RYDG GLITP G
Sbjct 217 PCLREQDALERMALLGLPFLFFIDAAQGRASLLYRRYDGAYGLITPAG 264
>gi|256376081|ref|YP_003099741.1| hypothetical protein Amir_1947 [Actinosynnema mirum DSM 43827]
gi|255920384|gb|ACU35895.1| hypothetical protein Amir_1947 [Actinosynnema mirum DSM 43827]
Length=235
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/208 (41%), Positives = 102/208 (50%), Gaps = 11/208 (5%)
Query 57 ARVRLTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCP 116
ARVRLT G L+Q N +V +RAQ A D R+ Q+ R A
Sbjct 35 ARVRLTA--LGGGTALLQANAEVRGHRIRAQVAAPEADVAGLLRERVAAQVSRLDAPGAH 92
Query 117 RPWPDRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAA--MDAMDYDVHLFTDAETGEDA 174
R WP R + T + +R A AA MD MDYD HLF D+ETG+D+
Sbjct 93 RAWPGPDRAPVVTGRAGARRVARRKRVRAALCAPDAAALAMDLMDYDFHLFADSETGQDS 152
Query 175 VVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGL 234
V+YR GP+G RLAR PP VPL N P P LTEA AV R E L
Sbjct 153 VLYRVGPTGYRLARLEDTAPPALPVV-------VPLTTNVHPVPELTEAEAVRRLDETEL 205
Query 235 PFLFFTDQATGRGQLLYSRYDGNLGLIT 262
PF FF T RG +LY R+DG+ GL+T
Sbjct 206 PFRFFRQAGTRRGAVLYRRWDGDYGLLT 233
>gi|145225576|ref|YP_001136254.1| hypothetical protein Mflv_5000 [Mycobacterium gilvum PYR-GCK]
gi|145218062|gb|ABP47466.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=269
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/226 (39%), Positives = 118/226 (53%), Gaps = 28/226 (12%)
Query 57 ARVRLTMAN--CADGPTLVQINLQVGDTPLRAQ--AATA--GIDDLRPALIRLDRQIVRA 110
ARVRLT + + P + Q NL VG P+RAQ AATA ID L RL R++
Sbjct 46 ARVRLTRRHDPAVERPVIAQANLDVGGRPVRAQVEAATAQEAIDTLES---RLRRRLEHL 102
Query 111 SAQW-CPR------PW--PDRPRRRLT----TPAEALVTRRKPVVLRRATPLQAIAAMDA 157
+W PR PW D+ R + TP E + RRK + T A+A M+
Sbjct 103 HDRWDTPRGPGAAPPWRHDDKAEREIRSFGGTPREPRIIRRKSYSMAPCTVDDAVAEMEL 162
Query 158 MDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPT 217
+DYD HLF + +G AVVYR+ P+G R+A + P + AP V ++
Sbjct 163 LDYDFHLFAEKGSGTAAVVYRSEPTGYRIA----LVAPSLAGEVAPFQGLV--TISPHAV 216
Query 218 PVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITP 263
P L E A++R R GLPFLF+ D A GR +LY R+DG+ G++TP
Sbjct 217 PCLREQDALERLRRLGLPFLFYVDAAQGRASVLYRRFDGDYGVLTP 262
>gi|296170915|ref|ZP_06852452.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894464|gb|EFG74208.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=267
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/212 (38%), Positives = 104/212 (50%), Gaps = 29/212 (13%)
Query 72 LVQINLQVGDTPLRAQ----AATAGIDDLRPALIRLDRQIVRASAQW----------CPR 117
+ Q NL V P+RAQ A ID L RL RQ+ RA+ W P
Sbjct 63 IAQANLDVNGRPVRAQVEGVTAREAIDRLE---ARLRRQLERAAEHWEAKRGGVPSRGPH 119
Query 118 PW------PDRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETG 171
W RP+ E + R K L T +A M+ +DYD HLFT+ T
Sbjct 120 EWRHETEPTHRPKYFPRPEGERRIMRHKSYSLPTCTVEEAALEMEQLDYDFHLFTEEATR 179
Query 172 EDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRARE 231
+D+V+YR GP+ RLA+ + PG + AP +PL ++ +P P LT A++R
Sbjct 180 QDSVIYREGPTEYRLAQAN----PGATDELAPFR--LPLTISPQPAPRLTVDQAIERIGL 233
Query 232 HGLPFLFFTDQATGRGQLLYSRYDGNLGLITP 263
G PFLFF D RG +LY RYDG+ GLITP
Sbjct 234 LGQPFLFFVDTGRDRGSVLYHRYDGHYGLITP 265
>gi|315445929|ref|YP_004078808.1| hypothetical protein Mspyr1_44180 [Mycobacterium sp. Spyr1]
gi|315264232|gb|ADU00974.1| hypothetical protein Mspyr1_44180 [Mycobacterium sp. Spyr1]
Length=269
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/226 (39%), Positives = 118/226 (53%), Gaps = 28/226 (12%)
Query 57 ARVRLTMAN--CADGPTLVQINLQVGDTPLRAQ--AATA--GIDDLRPALIRLDRQIVRA 110
ARVRLT + + P + Q NL VG P+RAQ AATA +D L RL R++
Sbjct 46 ARVRLTRRHDPAVERPVIAQANLDVGGRPVRAQVEAATAQEAVDTLES---RLRRRLEHL 102
Query 111 SAQW-CPR------PW--PDRPRRRLT----TPAEALVTRRKPVVLRRATPLQAIAAMDA 157
+W PR PW D+ R + TP E + RRK + T A+A M+
Sbjct 103 HDRWDTPRGPGAAPPWRHDDKAEREIRSFGGTPREPRIIRRKSYSMAPCTVDDAVAEMEL 162
Query 158 MDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPT 217
+DYD HLF + +G AVVYR+ P+G R+A + P + AP V ++
Sbjct 163 LDYDFHLFAEKGSGTAAVVYRSEPTGYRIA----LVAPSLAGEVAPFQGLV--TISPHAV 216
Query 218 PVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITP 263
P L E A++R R GLPFLF+ D A GR +LY R+DG+ G++TP
Sbjct 217 PCLREQDALERLRLLGLPFLFYVDAAQGRASVLYRRFDGDFGVLTP 262
>gi|291006801|ref|ZP_06564774.1| hypothetical protein SeryN2_19953 [Saccharopolyspora erythraea
NRRL 2338]
Length=252
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/253 (39%), Positives = 122/253 (49%), Gaps = 33/253 (13%)
Query 34 ASQAERLARAVGRVLADRGVTGGARVRLTMANCADGPTLVQINLQVGDTPLRAQ--AATA 91
A AE R+V R + + RV A + Q +L V P+RAQ AAT+
Sbjct 12 ADYAEERVRSVFRFAHEPVLYARVRVSRHRDPAASPRAVAQASLDVNGRPVRAQVRAATS 71
Query 92 --GIDDLRPALIRLDRQIVRASAQW----------CPRPW--PDRPRRR---LTTPAE-A 133
ID L RL + R + W P W D+P RR P E +
Sbjct 72 EEAIDRLHD---RLQHVLERVARHWEARRGRMGSRQPHEWRHGDQPARRPPYFPRPVEES 128
Query 134 LVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVF 193
V R K L R A MD MDYD HLFT+ TG+D+V+YR PSG RLA+ V
Sbjct 129 QVIRHKTFALARCGVDDAEFDMDVMDYDFHLFTEVGTGQDSVLYRT-PSGFRLAQ---VE 184
Query 194 P-PGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYS 252
P PG A +P+ V+ + PVL+ A AV+R LPFLF+ D GRG LLY
Sbjct 185 PDPGHL-----AEHALPVTVSEQRAPVLSTAEAVERMGAMDLPFLFYLDGERGRGALLYR 239
Query 253 RYDGNLGLITPTG 265
RYDG+ GLITP+
Sbjct 240 RYDGHYGLITPSA 252
>gi|183980965|ref|YP_001849256.1| hypothetical protein MMAR_0944 [Mycobacterium marinum M]
gi|183174291|gb|ACC39401.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=267
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/147 (45%), Positives = 82/147 (56%), Gaps = 10/147 (6%)
Query 123 PRRRLTT----PAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR 178
PR+R T P E V RRK + T A M +DYD HLFT+ TG V+YR
Sbjct 127 PRQRDTYFPRPPEEREVIRRKSFTMAPCTVDDAATEMGLLDYDFHLFTEQGTGMAGVLYR 186
Query 179 AGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLF 238
GP+G RLA + P + +P +PL ++ P P+LTEA A +R GLPFLF
Sbjct 187 GGPTGYRLA----LVAPATADQLSPF--ELPLSISPHPAPILTEAEAAERLGVLGLPFLF 240
Query 239 FTDQATGRGQLLYSRYDGNLGLITPTG 265
F D A GR +LY RYDG+ GLITP G
Sbjct 241 FIDAAQGRAGVLYHRYDGHYGLITPAG 267
>gi|118616491|ref|YP_904823.1| hypothetical protein MUL_0695 [Mycobacterium ulcerans Agy99]
gi|118568601|gb|ABL03352.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=270
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/136 (46%), Positives = 77/136 (57%), Gaps = 6/136 (4%)
Query 130 PAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQ 189
P E V RRK + T A M +DYD HLFT+ TG V+YR GP+G RLA
Sbjct 141 PEEREVIRRKSFTMAPCTVDDAATEMGLLDYDFHLFTEQGTGMAGVLYRGGPTGYRLA-- 198
Query 190 HHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQL 249
+ P + +P +PL ++ P P+LTEA A +R GLPFLFF D A GR +
Sbjct 199 --LVAPATADQLSPF--ELPLSISPHPAPILTEAEAAERLGVLGLPFLFFIDAAQGRAGV 254
Query 250 LYSRYDGNLGLITPTG 265
LY RYDG+ GLITP G
Sbjct 255 LYHRYDGHYGLITPAG 270
>gi|296169074|ref|ZP_06850734.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896265|gb|EFG75926.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=266
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/230 (38%), Positives = 110/230 (48%), Gaps = 30/230 (13%)
Query 57 ARVRLTMAN--CADGPTLVQINLQVGDTPLRAQ----AATAGIDDLRPALIRLDRQIVRA 110
ARVRLT P + Q NL V P+RAQ A +D L RL R + RA
Sbjct 46 ARVRLTRHRDPAVQRPVVAQANLDVDGRPVRAQVQADTAREAVDLL---AARLRRGLERA 102
Query 111 S--------------AQWCPRPWPDRPRRRLTTPAEAL-VTRRKPVVLRRATPLQAIAAM 155
+ +W P R PA+ V RRK + T A M
Sbjct 103 AEHREARRGEPPARPGEWRHESQPARRPHYFPRPADQRRVIRRKSFTMAPCTLDDAAREM 162
Query 156 DAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSR 215
+ +DYD HLFT+ TG +V+YRAGP+G RLA + P + +P +P+ V+ +
Sbjct 163 ELLDYDFHLFTEEGTGVASVLYRAGPTGHRLA----LAAPELADRVSPHA--LPVTVSRQ 216
Query 216 PTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTG 265
P P LTEA A DR GLPFLFF G +LY RYDG+ GLITP G
Sbjct 217 PLPCLTEAGAADRLVMLGLPFLFFIHADYGCAGVLYHRYDGHYGLITPAG 266
>gi|108798067|ref|YP_638264.1| hypothetical protein Mmcs_1095 [Mycobacterium sp. MCS]
gi|126433728|ref|YP_001069419.1| hypothetical protein Mjls_1123 [Mycobacterium sp. JLS]
gi|108768486|gb|ABG07208.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|126233528|gb|ABN96928.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=271
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/241 (38%), Positives = 115/241 (48%), Gaps = 27/241 (11%)
Query 44 VGRVLADRGVTGGARVRLTMAN--CADGPTLVQINLQVGDTPLRAQA----ATAGIDDLR 97
+GRV ADR V ARVRLT + P + Q NL V +RAQ A ID L
Sbjct 39 LGRV-ADRPVLA-ARVRLTRRADPAVERPVVAQANLDVEGRLVRAQVEGATAHEAIDRLE 96
Query 98 PALIRLDRQIVR------------ASAQWCPRPWPDRPRRRLTTPAEA-LVTRRKPVVLR 144
L R ++ R +W + P+ PA+ V RRK LR
Sbjct 97 GRLRRRLERVARHWEARRGGLPTGEPNEWRHQSEPEHRPGHFPRPADDRQVLRRKSFTLR 156
Query 145 RATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPA 204
T +A+ ++ +DYD HLFT+ TG AV+YR G +G R+A + P AP
Sbjct 157 ACTVDEAVEELELLDYDFHLFTEKATGYAAVLYRGGETGYRVA----LVTPCAREELAPF 212
Query 205 GPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPT 264
PV ++ P L A AVDR G PFLFF D A GR +LY RYDG+ GLITP
Sbjct 213 DSPV--TISDLPVACLATAQAVDRLNLAGQPFLFFVDAAEGRACVLYHRYDGHYGLITPA 270
Query 265 G 265
G
Sbjct 271 G 271
>gi|119867163|ref|YP_937115.1| hypothetical protein Mkms_1112 [Mycobacterium sp. KMS]
gi|119693252|gb|ABL90325.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=267
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/241 (38%), Positives = 115/241 (48%), Gaps = 27/241 (11%)
Query 44 VGRVLADRGVTGGARVRLTMAN--CADGPTLVQINLQVGDTPLRAQ----AATAGIDDLR 97
+GRV ADR V ARVRLT + P + Q NL V +RAQ A ID L
Sbjct 35 LGRV-ADRPVLA-ARVRLTRRADPAVERPVVAQANLDVEGRLVRAQVEGATAHEAIDRLE 92
Query 98 PALIRLDRQIVR------------ASAQWCPRPWPDRPRRRLTTPAEA-LVTRRKPVVLR 144
L R ++ R +W + P+ PA+ V RRK LR
Sbjct 93 GRLRRRLERVARHWEARRGGLPTGEPNEWRHQSEPEHRPGHFPRPADDRQVLRRKSFTLR 152
Query 145 RATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPA 204
T +A+ ++ +DYD HLFT+ TG AV+YR G +G R+A + P AP
Sbjct 153 ACTVDEAVEELELLDYDFHLFTEKATGYAAVLYRGGETGYRVA----LVTPCAREELAPF 208
Query 205 GPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPT 264
PV ++ P L A AVDR G PFLFF D A GR +LY RYDG+ GLITP
Sbjct 209 DSPV--TISDLPVACLATAQAVDRLNLAGQPFLFFVDAAEGRACVLYHRYDGHYGLITPA 266
Query 265 G 265
G
Sbjct 267 G 267
>gi|240169274|ref|ZP_04747933.1| hypothetical protein MkanA1_08169 [Mycobacterium kansasii ATCC
12478]
Length=267
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/275 (36%), Positives = 130/275 (48%), Gaps = 36/275 (13%)
Query 17 HAREFP-DVAVFSGGRANASQAERLARA-VGRV--LADRGVTGGARVRLTMAN--CADGP 70
H E P D+ V R + A ARA +G++ LA R V ARVR+T + P
Sbjct 3 HETELPRDIEVDVTTRGDLPGAADYARAKIGQLGRLAHRPVLR-ARVRVTEHRDPAVERP 61
Query 71 TLVQINLQVGDTPLRAQA----ATAGIDDLRPALIRLDRQIVRASAQW----------CP 116
+ Q NL V +RAQA A ID L RL ++ R + W P
Sbjct 62 VVAQGNLDVDGRLVRAQAQGETAQETIDLLES---RLRHRLERIAEHWESRRGEQPAAGP 118
Query 117 RPW--PDRPRRR---LTTPA-EALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAET 170
W P R PA E V RRK + T +A M+ +DYD HLFT+ T
Sbjct 119 HEWRHESEPSHRPSYFPRPADERRVIRRKSFTMAPCTVDEAALEMNLLDYDFHLFTEIGT 178
Query 171 GEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAR 230
V+YR GP+G RLA + P + +P + + ++++P P L+ A +R
Sbjct 179 ASAGVLYRGGPTGYRLA----LVAPVPTDQLSPF--ELDVTISAQPAPCLSLDEATERLS 232
Query 231 EHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTG 265
GLPFLFF D A GR +LY RYDG+ GLITP G
Sbjct 233 LLGLPFLFFIDAAQGRASVLYHRYDGHYGLITPAG 267
>gi|134098960|ref|YP_001104621.1| hypothetical protein SACE_2397 [Saccharopolyspora erythraea NRRL
2338]
gi|133911583|emb|CAM01696.1| hypothetical protein SACE_2397 [Saccharopolyspora erythraea NRRL
2338]
Length=123
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/131 (48%), Positives = 77/131 (59%), Gaps = 10/131 (7%)
Query 135 VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFP 194
+ R K L R A MD MDYD HLFT+ TG+D+V+YR PSG RLA+ V P
Sbjct 1 MIRHKTFALARCGVDDAEFDMDVMDYDFHLFTEVGTGQDSVLYRT-PSGFRLAQ---VEP 56
Query 195 -PGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSR 253
PG A +P+ V+ + PVL+ A AV+R LPFLF+ D GRG LLY R
Sbjct 57 DPGHLAEHA-----LPVTVSEQRAPVLSTAEAVERMGAMDLPFLFYLDGERGRGALLYRR 111
Query 254 YDGNLGLITPT 264
YDG+ GLITP+
Sbjct 112 YDGHYGLITPS 122
>gi|118468280|ref|YP_888224.1| hypothetical protein MSMEG_3935 [Mycobacterium smegmatis str.
MC2 155]
gi|118169567|gb|ABK70463.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=258
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/229 (36%), Positives = 110/229 (49%), Gaps = 31/229 (13%)
Query 57 ARVRLTMAN--CADGPTLVQINLQVGDTPLRAQA----ATAGIDDLRPALIRLDRQIVRA 110
ARVRLT + P + Q NL V +RAQ A +D L RL ++ R
Sbjct 36 ARVRLTRHGDPAVERPVIAQANLDVNGRQVRAQVEGVNAREAVDRLE---ARLRSRLERI 92
Query 111 SAQW----------CPRPW--PDRPRRRLTT----PAEALVTRRKPVVLRRATPLQAIAA 154
+ W R W P RR P E + RRK + T +A
Sbjct 93 AEHWEARRGGVPAEAGREWRHESEPARRPGYFPRPPEERRIIRRKSFSMVPCTVDEAALE 152
Query 155 MDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNS 214
M+ +DYD HLFT+ TG AV+Y+ GP+G RL + P + +P P+ +++
Sbjct 153 MEMLDYDFHLFTEKGTGFAAVLYKGGPTGYRLV----LVIPVPADELSPFEKPI--TIST 206
Query 215 RPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITP 263
P P LT+ AV+R GLPFLF+ D A GR ++Y RYDG+ GLITP
Sbjct 207 HPAPCLTQRDAVERLGLLGLPFLFYIDAAEGRASVIYRRYDGHYGLITP 255
>gi|336054488|ref|YP_004562775.1| Ribosome-associated inhibitor protein Y [Lactobacillus kefiranofaciens
ZW3]
gi|333957865|gb|AEG40673.1| Ribosome-associated inhibitor protein Y [Lactobacillus kefiranofaciens
ZW3]
Length=180
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 57/115 (50%), Gaps = 18/115 (15%)
Query 84 LRAQAATAGIDDLRPAL----IRLDRQIVRASAQWCPRP--------WPDRPRRRLTTPA 131
LRA+ T DD+ ++ +L+RQI + + + + ++P+ P+
Sbjct 65 LRAEETT---DDMYRSIDFVSEKLERQIRKYKTRVNKKSREKGLQDFFVEQPQEE-KKPS 120
Query 132 EALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
E + R K V L+ P +AI MD +++D +F DAET +VVYR G GL
Sbjct 121 EFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNGTSVVYRRNDGRYGL 175
>gi|289423900|ref|ZP_06425693.1| SSU ribosomal protein S30P [Peptostreptococcus anaerobius 653-L]
gi|289155677|gb|EFD04349.1| SSU ribosomal protein S30P [Peptostreptococcus anaerobius 653-L]
Length=183
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/101 (28%), Positives = 45/101 (45%), Gaps = 13/101 (12%)
Query 102 RLDRQIVRASAQWCPRPWPDRPRRRLT-------------TPAEALVTRRKPVVLRRATP 148
+L+RQIV+ ++ R + R +E + RRK +R +P
Sbjct 82 KLNRQIVKYKHKFKSRASGNDTIRFENFNQLLEEEIEAVPEDSELVFERRKKFDIRPMSP 141
Query 149 LQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQ 189
+A+ M+ + +D LF D +T E +VYR G G L Q
Sbjct 142 EEAVLQMNLLGHDFFLFKDQDTFEVCLVYRRGDGGYGLIEQ 182
>gi|227903554|ref|ZP_04021359.1| ribosome-associated inhibitor protein Y [Lactobacillus acidophilus
ATCC 4796]
gi|227868441|gb|EEJ75862.1| ribosome-associated inhibitor protein Y [Lactobacillus acidophilus
ATCC 4796]
Length=195
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 56/115 (49%), Gaps = 18/115 (15%)
Query 84 LRAQAATAGIDDLRPAL----IRLDRQIVRASAQWCPRP--------WPDRPRRRLTTPA 131
LRA+ T DD+ ++ +L+RQI + + + + ++P P+
Sbjct 80 LRAEETT---DDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGLQDFFVEQPEEE-KKPS 135
Query 132 EALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
E + R K V L+ P +AI MD +++D +F DAET +VVYR G GL
Sbjct 136 EFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNGTSVVYRRNDGRYGL 190
>gi|58336994|ref|YP_193579.1| phosphate starvation inducible protein stressrelated [Lactobacillus
acidophilus NCFM]
gi|58254311|gb|AAV42548.1| putative phosphate starvation inducible protein stressrelated
[Lactobacillus acidophilus NCFM]
Length=180
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/91 (32%), Positives = 45/91 (50%), Gaps = 6/91 (6%)
Query 96 LRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTTPAEALVTRRKPVVLRRATPLQAIAAM 155
+R R++R+ Q P+ ++ P+E + R K V L+ P +AI M
Sbjct 89 IRKYKTRVNRKSREKGLQDFFVEQPEEEKK----PSEFDIVRNKRVSLKPMDPEEAILQM 144
Query 156 DAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
D +++D +F DAET +VVYR G GL
Sbjct 145 DMLEHDFFVFEDAETNGTSVVYRRNDGRYGL 175
>gi|315037898|ref|YP_004031466.1| phosphate starvation inducible protein stress related protein
[Lactobacillus amylovorus GRL 1112]
gi|325956371|ref|YP_004291783.1| phosphate starvation inducible protein stress-like protein [Lactobacillus
acidophilus 30SC]
gi|312276031|gb|ADQ58671.1| putative phosphate starvation inducible protein stress related
protein [Lactobacillus amylovorus GRL 1112]
gi|325332936|gb|ADZ06844.1| phosphate starvation inducible protein stress related protein
[Lactobacillus acidophilus 30SC]
gi|327183190|gb|AEA31637.1| phosphate starvation inducible protein stress-like protein [Lactobacillus
amylovorus GRL1118]
Length=180
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 56/115 (49%), Gaps = 18/115 (15%)
Query 84 LRAQAATAGIDDLRPAL----IRLDRQIVRASAQWCPRP--------WPDRPRRRLTTPA 131
LRA+ T DD+ ++ +L+RQI + + + + + P+ P+
Sbjct 65 LRAEETT---DDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGLQDFFVEEPQEE-KKPS 120
Query 132 EALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
E + R K V L+ P +AI MD +++D +F DAET +VVYR G GL
Sbjct 121 EFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNGTSVVYRRNDGRYGL 175
>gi|242037341|ref|XP_002466065.1| hypothetical protein SORBIDRAFT_01g000590 [Sorghum bicolor]
gi|241919919|gb|EER93063.1| hypothetical protein SORBIDRAFT_01g000590 [Sorghum bicolor]
Length=310
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/54 (41%), Positives = 29/54 (54%), Gaps = 0/54 (0%)
Query 218 PVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTGDGVADG 271
P LT A+++ G F F D+ATG+ +LY R +G GLI P DG D
Sbjct 229 PPLTVEEALEQLDNVGHNFYCFRDEATGQVNILYRRKEGGYGLIIPKEDGNFDN 282
>gi|226528966|ref|NP_001151285.1| plastid-specific 30S ribosomal protein 1 [Zea mays]
gi|195645526|gb|ACG42231.1| plastid-specific 30S ribosomal protein 1 [Zea mays]
Length=309
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/53 (40%), Positives = 28/53 (53%), Gaps = 0/53 (0%)
Query 218 PVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTGDGVAD 270
P LT A+++ F F D+ATG+ +LY R +G GLI P DG D
Sbjct 227 PPLTVEEALEQLENVDHDFYCFRDEATGQVNILYRRKEGGYGLIIPKNDGKVD 279
>gi|255634767|gb|ACU17745.1| unknown [Glycine max]
Length=291
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 0/55 (0%)
Query 218 PVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTGDGVADGL 272
P LT A A+++ F F ++ TG ++Y R +G GLI P GDG A+ L
Sbjct 222 PPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKL 276
>gi|307243698|ref|ZP_07525838.1| ribosomal subunit interface protein [Peptostreptococcus stomatis
DSM 17678]
gi|306492907|gb|EFM64920.1| ribosomal subunit interface protein [Peptostreptococcus stomatis
DSM 17678]
Length=183
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/152 (26%), Positives = 66/152 (44%), Gaps = 21/152 (13%)
Query 57 ARVRLTMANCADGPTLVQINLQ-VGDTPLRAQAATAGIDDLRPALI----RLDRQIVRAS 111
A +R+T++ V++ L + +RA+ DDL A+ +L+RQIV+
Sbjct 35 AELRVTVSANKKEKQKVEVTLDSINGHVVRAEDVQ---DDLYSAIDLVSDKLNRQIVKYK 91
Query 112 AQWCPRPWPDRPRRR-------------LTTPAEALVTRRKPVVLRRATPLQAIAAMDAM 158
++ R + R L +E + R+K LR + +A+ M+ +
Sbjct 92 NKFKTRGAGNSTIRFENFDELVEEEIDILPGDSELVFERKKRFNLRPMSAEEAVLQMNLL 151
Query 159 DYDVHLFTDAETGEDAVVYRAGPSGLRLARQH 190
+D LF D +T E +VYR G G L Q
Sbjct 152 GHDFFLFKDQDTFEVCLVYRRGDGGYGLIEQE 183
>gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093026|gb|ABJ58179.1| SSU ribosomal protein S30P [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125364|gb|ADY84694.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length=185
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 23/120 (19%)
Query 84 LRAQAATAGIDDLRPAL----IRLDRQIVRASAQ-------------WCPRPWPDRPRRR 126
LRA+ T DD+ ++ +L+RQI + + + P P +
Sbjct 65 LRAEETT---DDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGVEEFFIPEDAPVEEEKE 121
Query 127 LTTPAEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
P +V R K V L+ P +AI MD +++D +F DAET +VVYR G GL
Sbjct 122 EKAPMFKIV-RNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAETNGTSVVYRRNDGSYGL 180
>gi|223994401|ref|XP_002286884.1| light-repressed protein a [Thalassiosira pseudonana CCMP1335]
gi|220978199|gb|EED96525.1| light-repressed protein a [Thalassiosira pseudonana CCMP1335]
Length=198
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 38/62 (62%), Gaps = 9/62 (14%)
Query 130 PAEALVTRRKPVVLRRATPL---QAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRL 186
P +A+VT+ K +TP+ +AI A+D +D+D ++F D ET E +VVY+ G+ L
Sbjct 140 PDQAVVTKVK------STPISIKEAIFALDYIDHDFYVFRDEETNEVSVVYKRNAGGVGL 193
Query 187 AR 188
+
Sbjct 194 IQ 195
>gi|77919533|ref|YP_357348.1| ribosome-associated protein Y (PSrp-1) [Pelobacter carbinolicus
DSM 2380]
gi|77545616|gb|ABA89178.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Pelobacter
carbinolicus DSM 2380]
Length=182
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/61 (37%), Positives = 32/61 (53%), Gaps = 2/61 (3%)
Query 205 GPPVPLIVNSRPTPV--LTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLIT 262
G P P+++ S+ V L+ AV + FL F+D +T ++Y R DGN GLI
Sbjct 119 GSPEPVVIRSQSFSVKPLSVEEAVMQMDLLNKTFLVFSDASTNEISVVYRRKDGNYGLIV 178
Query 263 P 263
P
Sbjct 179 P 179
>gi|296111497|ref|YP_003621879.1| putative phosphate starvation inducible stress related protein
[Leuconostoc kimchii IMSNU 11154]
gi|339491234|ref|YP_004705739.1| putative phosphate starvation inducible stress-like protein [Leuconostoc
sp. C2]
gi|295833029|gb|ADG40910.1| putative phosphate starvation inducible stress related protein
[Leuconostoc kimchii IMSNU 11154]
gi|338852906|gb|AEJ31116.1| putative phosphate starvation inducible stress related protein
[Leuconostoc sp. C2]
Length=182
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (39%), Positives = 31/52 (60%), Gaps = 2/52 (3%)
Query 135 VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
+ R K V L+ +P +A MD +++D +F DAET D+V+Y+ G GL
Sbjct 125 IVRTKQVDLKPMSPEEAALQMDLLEHDFFIFQDAETNTDSVIYKRQDGKYGL 176
>gi|313472387|ref|ZP_07812879.1| ribosomal subunit interface protein [Lactobacillus jensenii 1153]
gi|313449137|gb|EEQ68754.2| ribosomal subunit interface protein [Lactobacillus jensenii 1153]
Length=187
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/94 (32%), Positives = 43/94 (46%), Gaps = 26/94 (27%)
Query 102 RLDRQIVRASAQWCPRPWPDRPRRR----------LTTPAEAL-------VTRRKPVVLR 144
+L+RQI R + R R+ + TPAE + R K V L+
Sbjct 90 KLERQI---------RKYKTRVNRKGREKGVKDFFIETPAEEEKPTSEFDIVRNKRVSLK 140
Query 145 RATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR 178
P +AI MD +++D +F DAET +VVYR
Sbjct 141 PMDPEEAILQMDMLEHDFFVFQDAETNGTSVVYR 174
>gi|218194143|gb|EEC76570.1| hypothetical protein OsI_14401 [Oryza sativa Indica Group]
gi|222626202|gb|EEE60334.1| hypothetical protein OsJ_13433 [Oryza sativa Japonica Group]
Length=301
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (60%), Gaps = 0/32 (0%)
Query 236 FLFFTDQATGRGQLLYSRYDGNLGLITPTGDG 267
F F D+ TG +LY R +G GLI P GDG
Sbjct 251 FYAFRDEKTGEMNVLYKRKEGGFGLIVPKGDG 282
>gi|115456699|ref|NP_001051950.1| Os03g0856500 [Oryza sativa Japonica Group]
gi|30102988|gb|AAP21401.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|41393260|gb|AAS01983.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|108712193|gb|ABF99988.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|113550421|dbj|BAF13864.1| Os03g0856500 [Oryza sativa Japonica Group]
gi|215692514|dbj|BAG87934.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737784|dbj|BAG96914.1| unnamed protein product [Oryza sativa Japonica Group]
Length=309
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (60%), Gaps = 0/32 (0%)
Query 236 FLFFTDQATGRGQLLYSRYDGNLGLITPTGDG 267
F F D+ TG +LY R +G GLI P GDG
Sbjct 259 FYAFRDEKTGEMNVLYKRKEGGFGLIVPKGDG 290
>gi|323466943|gb|ADX70630.1| Ribosome-associated factor Y [Lactobacillus helveticus H10]
Length=187
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/52 (45%), Positives = 30/52 (58%), Gaps = 2/52 (3%)
Query 135 VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
+ R K V L+ P +AI MD M++D +F DAET +VVYR G GL
Sbjct 131 IVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETNGISVVYRRNDGRYGL 182
>gi|260102490|ref|ZP_05752727.1| ribosomal subunit interface protein [Lactobacillus helveticus
DSM 20075]
gi|260083695|gb|EEW67815.1| ribosomal subunit interface protein [Lactobacillus helveticus
DSM 20075]
Length=188
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/52 (45%), Positives = 30/52 (58%), Gaps = 2/52 (3%)
Query 135 VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
+ R K V L+ P +AI MD M++D +F DAET +VVYR G GL
Sbjct 132 IVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETNGISVVYRRNDGRYGL 183
>gi|161507198|ref|YP_001577152.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus DPC 4571]
gi|160348187|gb|ABX26861.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus DPC 4571]
Length=181
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/52 (45%), Positives = 30/52 (58%), Gaps = 2/52 (3%)
Query 135 VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
+ R K V L+ P +AI MD M++D +F DAET +VVYR G GL
Sbjct 125 IVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETNGISVVYRRNDGRYGL 176
>gi|156743010|ref|YP_001433139.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
castenholzii DSM 13941]
gi|156234338|gb|ABU59121.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
castenholzii DSM 13941]
Length=198
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (39%), Positives = 29/57 (51%), Gaps = 2/57 (3%)
Query 209 PLIVNSRPTPV--LTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITP 263
P IV ++ V + AV++ G F F D TG+ +LY R DGN GLI P
Sbjct 138 PRIVRTKEFQVKPMYSDEAVEQMELLGHSFFIFQDADTGKLNVLYRRQDGNYGLIVP 194
>gi|238854886|ref|ZP_04645216.1| ribosome-associated protein Y [Lactobacillus jensenii 269-3]
gi|260664173|ref|ZP_05865026.1| ribosome-associated protein Y [Lactobacillus jensenii SJ-7A-US]
gi|282931598|ref|ZP_06337091.1| ribosome-associated factor Y [Lactobacillus jensenii 208-1]
gi|238832676|gb|EEQ24983.1| ribosome-associated protein Y [Lactobacillus jensenii 269-3]
gi|260562059|gb|EEX28028.1| ribosome-associated protein Y [Lactobacillus jensenii SJ-7A-US]
gi|281304209|gb|EFA96318.1| ribosome-associated factor Y [Lactobacillus jensenii 208-1]
Length=181
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/102 (33%), Positives = 46/102 (46%), Gaps = 28/102 (27%)
Query 102 RLDRQIVRASAQWCPRPWPDRPRRR----------LTTPAEAL-------VTRRKPVVLR 144
+L+RQI R + R R+ + TPAE + R K V L+
Sbjct 84 KLERQI---------RKYKTRVNRKGREKGVKDFFIETPAEEEKPTSEFDIVRNKRVSLK 134
Query 145 RATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
P +AI MD +++D +F DAET +VVYR G GL
Sbjct 135 PMDPEEAILQMDMLEHDFFVFQDAETNGTSVVYRRNDGRYGL 176
>gi|256851472|ref|ZP_05556861.1| sigma 54 modulation protein/SSU ribosomal protein S30P [Lactobacillus
jensenii 27-2-CHN]
gi|260660893|ref|ZP_05861808.1| ribosome-associated protein Y [Lactobacillus jensenii 115-3-CHN]
gi|256616534|gb|EEU21722.1| sigma 54 modulation protein/SSU ribosomal protein S30P [Lactobacillus
jensenii 27-2-CHN]
gi|260548615|gb|EEX24590.1| ribosome-associated protein Y [Lactobacillus jensenii 115-3-CHN]
Length=187
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/94 (31%), Positives = 43/94 (46%), Gaps = 26/94 (27%)
Query 102 RLDRQIVRASAQWCPRPWPDRPRRR----------LTTPAEAL-------VTRRKPVVLR 144
+L+RQI R + R R+ + TPAE + R K V L+
Sbjct 90 KLERQI---------RKYKTRVNRKGREKGVKDFFIETPAEEEKPTSEFDIVRNKRVSLK 140
Query 145 RATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR 178
P +AI MD +++D +F DAET ++VYR
Sbjct 141 PMDPEEAILQMDMLEHDFFVFQDAETNGTSIVYR 174
>gi|313123315|ref|YP_004033574.1| ribosome-associated factor y [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312279878|gb|ADQ60597.1| Ribosome-associated factor Y [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325684474|gb|EGD26638.1| ribosomal subunit interface protein [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length=185
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/52 (43%), Positives = 30/52 (58%), Gaps = 2/52 (3%)
Query 135 VTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYR--AGPSGL 184
+ R K V L+ P +AI MD +++D +F DAET +VVYR G GL
Sbjct 129 IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAETNGTSVVYRRNDGSYGL 180
Lambda K H
0.322 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 426144143792
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40