BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 21,062,489 sequences; 7,218,481,314 total letters Query= Rv0082 Rv0082 Probable oxidoreductase 89924:90403 forward MW:16260 Length=159 Score E Sequences producing significant alignments: (Bits) Value gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 ... 312 1e-83 gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuber... 311 3e-83 gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [... 309 1e-82 gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [... 262 1e-68 gi|408780885|ref|ZP_11192658.1| oxidoreductase [Mycobacterium ka... 253 7e-66 gi|333991242|ref|YP_004523856.1| oxidoreductase [Mycobacterium s... 244 4e-63 gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative... 242 2e-62 gi|374610219|ref|ZP_09683012.1| NADH ubiquinone oxidoreductase 2... 240 7e-62 gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium m... 233 9e-60 gi|403730559|ref|ZP_10949048.1| putative NADH dehydrogenase [Gor... 231 3e-59 gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulce... 227 5e-58 gi|400535265|ref|ZP_10798802.1| oxidoreductase [Mycobacterium co... 224 4e-57 gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tu... 208 2e-52 gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20... 206 1e-51 gi|336178234|ref|YP_004583609.1| NADH ubiquinone oxidoreductase ... 202 2e-50 gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase ... 191 5e-47 gi|375095658|ref|ZP_09741923.1| Ni,Fe-hydrogenase III small subu... 189 2e-46 gi|408527617|emb|CCK25791.1| NADH ubiquinone oxidoreductase 20 k... 187 7e-46 gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase ... 186 1e-45 gi|395777230|ref|ZP_10457745.1| NADH ubiquinone oxidoreductase 2... 176 2e-42 gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase ... 169 2e-40 gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase ... 166 1e-39 gi|392375866|ref|YP_003207699.1| hycG protein [Candidatus Methyl... 157 9e-37 gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit... 155 2e-36 gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 2... 152 3e-35 gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 2... 152 3e-35 gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III sm... 151 4e-35 gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [R... 150 1e-34 gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20... 150 1e-34 gi|359791660|ref|ZP_09294505.1| NADH ubiquinone oxidoreductase 2... 149 1e-34 gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase ... 149 2e-34 gi|381168069|ref|ZP_09877271.1| Ni,Fe-hydrogenase III small subu... 148 4e-34 gi|402773433|ref|YP_006592970.1| NADH ubiquinone oxidoreductase ... 147 8e-34 gi|344943807|ref|ZP_08783093.1| NADH ubiquinone oxidoreductase 2... 147 9e-34 gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7... 147 1e-33 gi|386828842|ref|ZP_10115949.1| Ni,Fe-hydrogenase III small subu... 147 1e-33 gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizo... 146 2e-33 gi|357024581|ref|ZP_09086730.1| NADH ubiquinone oxidoreductase 2... 146 2e-33 gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 ... 145 2e-33 gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 ... 145 2e-33 gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase ... 145 4e-33 gi|365900215|ref|ZP_09438090.1| HycG protein [Bradyrhizobium sp.... 144 7e-33 gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase ... 144 8e-33 gi|392377183|ref|YP_004984342.1| NADH ubiquinone oxidoreductase,... 142 2e-32 gi|384916584|ref|ZP_10016740.1| Formate hydrogenlyase subunit 7 ... 142 2e-32 gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 ... 142 3e-32 gi|389810005|ref|ZP_10205638.1| Hydrogenase-4 subunit I [Rhodano... 141 4e-32 gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase ... 141 4e-32 gi|405382828|ref|ZP_11036605.1| Ni,Fe-hydrogenase III small subu... 141 4e-32 gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like pr... 141 4e-32 >gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium tuberculosis CDC1551] gi|31791260|ref|NP_853753.1| oxidoreductase [Mycobacterium bovis AF2122/97] gi|121635995|ref|YP_976218.1| oxidoreductase [Mycobacterium bovis BCG str. Pasteur 1173P2] 90 more sequence titles Length=159 Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 159/159 (100%), Positives = 159/159 (100%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA Sbjct 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK Sbjct 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuberculosis H37Rv] gi|2808739|emb|CAA16263.1| PROBABLE OXIDOREDUCTASE [Mycobacterium tuberculosis H37Rv] Length=159 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 158/159 (99%), Positives = 159/159 (100%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASP+HADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA Sbjct 61 DAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK Sbjct 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298497268|gb|EFI32562.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=159 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/159 (99%), Positives = 158/159 (99%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DA RFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA Sbjct 61 DAGRFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK Sbjct 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 >gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897987|gb|EFG77567.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=159 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/159 (85%), Positives = 144/159 (91%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGW++K RVGR+ EPA P P + EPPA VRGSLQIRHVDAGSCNGCEVEI+GAFGPVY Sbjct 1 MGWISKALRVGRIAEPAPPAPEPVTEPPAAVRGSLQIRHVDAGSCNGCEVEIAGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVTHNMAGPLR T+EATPRPR VIACGDCA++RGVF Sbjct 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRTTIEATPRPRRVIACGDCAIDRGVFG 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGV GAVGEVVPVDVEI GCPPTPA I+AALRSVTGK Sbjct 121 DAYGVAGAVGEVVPVDVEIPGCPPTPAQIVAALRSVTGK 159 >gi|408780885|ref|ZP_11192658.1| oxidoreductase [Mycobacterium kansasii ATCC 12478] Length=159 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 125/159 (79%), Positives = 136/159 (86%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGW+ +I R+GRV E P P PPAGVRGSLQ+RHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWIGRIMRLGRVAENTGPAPEPTVGPPAGVRGSLQVRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVT NMA PLR TL ATP PR+VIACGDCALNRGVF Sbjct 61 DAERFGARLVASPRHADALLVTGVVTRNMAQPLRNTLAATPAPRLVIACGDCALNRGVFG 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVG+VGEV+PVDVEI GCPP+P ++ ALRSVT + Sbjct 121 DAYGVVGSVGEVIPVDVEIPGCPPSPDQVVMALRSVTRR 159 >gi|333991242|ref|YP_004523856.1| oxidoreductase [Mycobacterium sp. JDM601] gi|333487210|gb|AEF36602.1| oxidoreductase [Mycobacterium sp. JDM601] Length=159 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/159 (75%), Positives = 135/159 (85%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 M W+++I +GR+ EPA P ++ +G+ GS+Q+RHVDAGSCNGCE+EI+GAFGPVY Sbjct 1 MSWLSRILALGRIAEPAGDRPPQTSDRSSGLAGSVQVRHVDAGSCNGCEIEIAGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVT NMA PLR T+EATPRPR VIACGDCALNRGVFA Sbjct 61 DAERFGARLVASPRHADALLVTGVVTRNMAEPLRNTVEATPRPRRVIACGDCALNRGVFA 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 AYG VGAVGEVVPVDVEI GCPPTP I+ ALRSVT + Sbjct 121 QAYGTVGAVGEVVPVDVEIPGCPPTPDQIVTALRSVTER 159 >gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104] gi|118165260|gb|ABK66157.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104] Length=135 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/134 (90%), Positives = 125/134 (94%), Gaps = 0/134 (0%) Query 26 EPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVV 85 EPPAGV GSLQ+RHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVV Sbjct 2 EPPAGVEGSLQVRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVV 61 Query 86 THNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPT 145 T NM PLR TL ATP+PRVVIACGDCALNRGVF DAYGVVGAVGE+VPVDVE+AGCPPT Sbjct 62 TRNMVEPLRNTLAATPQPRVVIACGDCALNRGVFTDAYGVVGAVGEIVPVDVEVAGCPPT 121 Query 146 PAAIMAALRSVTGK 159 PA I+ ALRSVTGK Sbjct 122 PAQIVDALRSVTGK 135 >gi|374610219|ref|ZP_09683012.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mycobacterium tusciae JS617] gi|373551250|gb|EHP77879.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mycobacterium tusciae JS617] Length=161 Score = 240 bits (613), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 121/160 (76%), Positives = 136/160 (85%), Gaps = 1/160 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 +GW+ K RVGR+VEPA P P + + +RGS+QIRHVDAGSCNGCE+EISGAFGPVY Sbjct 2 IGWLRKALRVGRIVEPAPPAPVSSSAALDALRGSVQIRHVDAGSCNGCEIEISGAFGPVY 61 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVT NM PLR T+ ATP PRVVIACGDCALNRG+FA Sbjct 62 DAERFGARLVASPRHADALLVTGVVTRNMEEPLRNTVSATPAPRVVIACGDCALNRGIFA 121 Query 121 DAYGVVGAVGEVV-PVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVG+V EV+ VD+EI GCPPTP AI+AALRSVT + Sbjct 122 DAYGVVGSVAEVLGSVDLEIPGCPPTPEAIVAALRSVTRR 161 >gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium marinum M] gi|183174994|gb|ACC40104.1| oxidoreductase [Mycobacterium marinum M] Length=159 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 126/159 (80%), Positives = 137/159 (87%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGW+A+I R+GRV E PAG+RGSLQ+RHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWIARIMRLGRVAEKLGDESTPAVAAPAGLRGSLQVRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVT NMA PL+ TL ATP+PRVVIACGDCALNRGVFA Sbjct 61 DAERFGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQPRVVIACGDCALNRGVFA 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVGAV EVVPVDVE+ GCPPTP ++AALRSVTG+ Sbjct 121 DAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAALRSVTGR 159 >gi|403730559|ref|ZP_10949048.1| putative NADH dehydrogenase [Gordonia rhizosphera NBRC 16068] gi|403202439|dbj|GAB93379.1| putative NADH dehydrogenase [Gordonia rhizosphera NBRC 16068] Length=159 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 129/159 (82%), Positives = 136/159 (86%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGW+ KI VGRV EPA P PPAGVRGSLQIRHVDAGSCNGCE+EI GAFGPVY Sbjct 1 MGWLRKILAVGRVAEPAGEPPVRAVNPPAGVRGSLQIRHVDAGSCNGCEIEIGGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAERFGARLVASPRHADALLVTGVVT NMA PLR T+ ATP+PRVVIACGDCALNR VF Sbjct 61 DAERFGARLVASPRHADALLVTGVVTRNMADPLRNTVAATPKPRVVIACGDCALNRSVFR 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVGAVG+VVPVDVEI GCPP P I+AALRSVTG+ Sbjct 121 DAYGVVGAVGDVVPVDVEIPGCPPAPDEIVAALRSVTGR 159 >gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulcerans Agy99] gi|118569601|gb|ABL04352.1| oxidoreductase [Mycobacterium ulcerans Agy99] Length=159 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 124/159 (78%), Positives = 135/159 (85%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGW+A+I R+G V E PAG+RGSLQ+RHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWIARIMRLGLVAEKLGDESTPAVAAPAGLRGSLQVRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAER GARLVASPRHADALLVTGVVT NMA PL+ TL ATP+PRVVIACGDCALNRGVFA Sbjct 61 DAERVGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQPRVVIACGDCALNRGVFA 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 DAYGVVGAV EVVPVDVE+ GCPPTP ++AALRSVTG+ Sbjct 121 DAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAALRSVTGR 159 >gi|400535265|ref|ZP_10798802.1| oxidoreductase [Mycobacterium colombiense CECT 3035] gi|400331623|gb|EJO89119.1| oxidoreductase [Mycobacterium colombiense CECT 3035] Length=159 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/159 (83%), Positives = 140/159 (89%), Gaps = 0/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 MGW+ + RVGR+ EPAAP P A P AGVRGS+QIRHVDAGSCNGCEVEISGAFGPVY Sbjct 1 MGWIGRALRVGRITEPAAPAPPMSANPVAGVRGSVQIRHVDAGSCNGCEVEISGAFGPVY 60 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 D ERFGARLVASPRHADALLVTGVVT NMAGPLR TL+ATPRPR VIACGDCAL RGVF Sbjct 61 DVERFGARLVASPRHADALLVTGVVTRNMAGPLRATLDATPRPRRVIACGDCALGRGVFR 120 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 D YGVVGAVG+VVPVDVEI GCPP+P+ I+AALRSVTGK Sbjct 121 DGYGVVGAVGDVVPVDVEIPGCPPSPSQIVAALRSVTGK 159 >gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tuberculosis SUMu007] gi|308347618|gb|EFP36469.1| oxidoreductase [Mycobacterium tuberculosis SUMu007] Length=143 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%) Query 13 VVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVAS 72 +VEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVAS Sbjct 1 MVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVAS 60 Query 73 PRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRG 117 PRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRG Sbjct 61 PRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRG 105 >gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp. JS614] gi|119539350|gb|ABL83967.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp. JS614] Length=162 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/153 (68%), Positives = 120/153 (79%), Gaps = 0/153 (0%) Query 7 IFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFG 66 I R GR+ EPA LP P + GS+QIRHVDAGSCNGCE+E+ GAFGPVYDAER+G Sbjct 10 IRRTGRIAEPAPALPDGHPGRPTELAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYG 69 Query 67 ARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADAYGVV 126 ARLVASPRHAD +LVTGVVTHNM PLR+T+EATPRPR+V+A GDCA N G F YGV Sbjct 70 ARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVA 129 Query 127 GAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 GAV + V VD+E+ GCPP PAAI+ ALR VTG+ Sbjct 130 GAVHDAVDVDLEVPGCPPEPAAIVDALRRVTGR 162 >gi|336178234|ref|YP_004583609.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of Datisca glomerata] gi|334859214|gb|AEH09688.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of Datisca glomerata] Length=160 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/160 (67%), Positives = 125/160 (79%), Gaps = 1/160 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPA-GVRGSLQIRHVDAGSCNGCEVEISGAFGPV 59 M + KI + GRV E A P P A P A + GS+Q+R VDAGSCNGCE+EI+ AFGPV Sbjct 1 MNLLRKIRKTGRVAEQAPPAPQAERLPAARELAGSVQVRCVDAGSCNGCEIEIAAAFGPV 60 Query 60 YDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVF 119 YDAER+GAR+VASPRHAD LLVTG VT NMA PLR+T+EATPRPR+VIA GDCALN G F Sbjct 61 YDAERYGARVVASPRHADVLLVTGPVTRNMAEPLRRTVEATPRPRLVIAVGDCALNCGEF 120 Query 120 ADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 A YGV G V +VVPVD+++ GCPP P AI+AALR+VT + Sbjct 121 AGGYGVQGPVADVVPVDLQVPGCPPEPDAIVAALRTVTRR 160 >gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium calvum DSM 43043] gi|315590214|gb|ADU49511.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium calvum DSM 43043] Length=157 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 98/157 (63%), Positives = 115/157 (74%), Gaps = 0/157 (0%) Query 3 WVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDA 62 + +I VGRV E A P GS+Q+RHVDAGSCNGCE+EI AFGPVYD Sbjct 1 MLKRIRAVGRVAEAAPAAPDGGLSRGGEFGGSIQVRHVDAGSCNGCELEIVSAFGPVYDL 60 Query 63 ERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADA 122 ER+G RLVASPRHAD LLVTG VT NMA PLRK EA P P++V+A GDCA N G+FA A Sbjct 61 ERYGVRLVASPRHADVLLVTGPVTRNMADPLRKAYEAMPAPKLVVALGDCARNCGIFAGA 120 Query 123 YGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 YGV GAV +V+PVD EI+GCPP+P I+AALR V+G+ Sbjct 121 YGVFGAVSDVIPVDREISGCPPSPEEIIAALREVSGR 157 >gi|375095658|ref|ZP_09741923.1| Ni,Fe-hydrogenase III small subunit [Saccharomonospora marina XMU15] gi|374656391|gb|EHR51224.1| Ni,Fe-hydrogenase III small subunit [Saccharomonospora marina XMU15] Length=169 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 93/136 (69%), Positives = 109/136 (81%), Gaps = 0/136 (0%) Query 24 IAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTG 83 +++ A + GS+Q+RHVDAGSCNGCE+EIS AFGPVYDAER+GARLVASPRHADALLVTG Sbjct 34 MSQHAAELAGSVQLRHVDAGSCNGCEIEISSAFGPVYDAERYGARLVASPRHADALLVTG 93 Query 84 VVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCP 143 VT NMA PLR+T EA P P+ V+A GDCA + G FA AYGV G V VVPVD+EI GCP Sbjct 94 PVTRNMAEPLRRTYEAVPEPKTVVAVGDCARDCGAFARAYGVAGPVSRVVPVDLEIPGCP 153 Query 144 PTPAAIMAALRSVTGK 159 P P AI+ LR +TG+ Sbjct 154 PRPEAIVEGLRKLTGR 169 >gi|408527617|emb|CCK25791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Streptomyces davawensis JCM 4913] Length=160 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 100/160 (63%), Positives = 118/160 (74%), Gaps = 1/160 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAG-VRGSLQIRHVDAGSCNGCEVEISGAFGPV 59 MG + KI GRV EPA P P + P A GS+Q+R VDAGSCNGCE+EI+ AF PV Sbjct 1 MGLLRKIRTTGRVAEPAPPRPEGESPPGAAEFGGSVQVRCVDAGSCNGCEIEIAAAFNPV 60 Query 60 YDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVF 119 YDAER+GARLVASPRHAD LVTG VT NMA PLR+T+ A PR+V+A GDCA++ G F Sbjct 61 YDAERYGARLVASPRHADVALVTGPVTRNMAEPLRRTVAAMGEPRLVVAVGDCAIDCGEF 120 Query 120 ADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 A YGV GAV +VVPVD+ + GCPP P I+AALR VTG+ Sbjct 121 AGGYGVEGAVSDVVPVDLAVPGCPPRPEEIVAALRRVTGR 160 >gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella multipartita DSM 44233] gi|258556379|gb|ACV79321.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella multipartita DSM 44233] Length=162 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/127 (73%), Positives = 106/127 (84%), Gaps = 0/127 (0%) Query 33 GSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGP 92 GS+Q+RHVDAGSCNGCEVEI AFGPVYDAER+GARLVASPRHADALLVTGVVT NMA P Sbjct 36 GSVQLRHVDAGSCNGCEVEIGAAFGPVYDAERYGARLVASPRHADALLVTGVVTRNMAQP 95 Query 93 LRKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAA 152 LR+T +A P P++V+A GDCA GVF A GV GAVG++VPVD+EI GCPP P I+A Sbjct 96 LRRTYQAVPDPKLVVAVGDCARTCGVFRGAPGVAGAVGDIVPVDLEIPGCPPRPEDIVAG 155 Query 153 LRSVTGK 159 LR +TG+ Sbjct 156 LRKLTGR 162 >gi|395777230|ref|ZP_10457745.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Streptomyces acidiscabies 84-104] Length=160 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/162 (63%), Positives = 120/162 (75%), Gaps = 5/162 (3%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVR---GSLQIRHVDAGSCNGCEVEISGAFG 57 MG + KI GRV EPA PLP +PP R GS+Q+R VDAGSCNGCE+EI+ AF Sbjct 1 MGLLRKIRETGRVAEPAPPLPEG--DPPGPAREFGGSVQVRCVDAGSCNGCEIEIAAAFN 58 Query 58 PVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRG 117 PVYDAER+GARLVASPRHAD LVTG VT NMA PLR+T+ A PR+V+A GDCA++ G Sbjct 59 PVYDAERYGARLVASPRHADVALVTGPVTRNMAEPLRRTVAAMSEPRLVVAVGDCAIDCG 118 Query 118 VFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 FA YGV GAV +VVPVD+ + GCPP P I+AALR VTG+ Sbjct 119 EFAGGYGVEGAVADVVPVDLVVPGCPPEPEEIVAALRRVTGR 160 >gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326949317|gb|AEA23014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length=161 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/127 (74%), Positives = 107/127 (85%), Gaps = 0/127 (0%) Query 33 GSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGP 92 GS+Q+RHVDAGSCNGCE+EI AFGPVYDAER+GARLVASPRHADAL+VTG VT NM P Sbjct 35 GSVQVRHVDAGSCNGCELEIGAAFGPVYDAERYGARLVASPRHADALVVTGAVTRNMVEP 94 Query 93 LRKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAA 152 LR+T EA P+VV+A GDCA N GVFA+AYGVVGAV +VVPVD+E+ GCPP P I+AA Sbjct 95 LRRTYEAVGEPKVVVAVGDCARNCGVFAEAYGVVGAVADVVPVDLEVVGCPPRPETIVAA 154 Query 153 LRSVTGK 159 LR TG+ Sbjct 155 LRLCTGR 161 >gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora curvata DSM 43183] gi|268313849|gb|ACZ00224.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora curvata DSM 43183] Length=158 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/159 (67%), Positives = 119/159 (75%), Gaps = 1/159 (0%) Query 1 MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY 60 M KI + GRV EPA P P P + GS+QIRHVDAGSCNGCE+EI+ FGPV+ Sbjct 1 MNLWKKIRKTGRVAEPAPPRPKDKPPKPE-LAGSVQIRHVDAGSCNGCELEIASVFGPVH 59 Query 61 DAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA 120 DAER+GARLVASPRHADALLVTG VT NM LR+T EA P P+VVIA GDCA N GVFA Sbjct 60 DAERYGARLVASPRHADALLVTGPVTRNMETALRRTYEAVPEPKVVIALGDCARNCGVFA 119 Query 121 DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 AYGV GAVG+VVPVDVE+ GCPP P I ALR +TG+ Sbjct 120 GAYGVAGAVGDVVPVDVEVPGCPPRPEDITKALRGLTGR 158 >gi|392375866|ref|YP_003207699.1| hycG protein [Candidatus Methylomirabilis oxyfera] gi|258593559|emb|CBE69900.1| HycG protein [Candidatus Methylomirabilis oxyfera] Length=172 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 75/120 (63%), Positives = 90/120 (75%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI P YD ERFG VASPRHAD LLVTG VT NMA PL Sbjct 45 SLHIREVDAGSCNGCELEIGALNNPYYDLERFGMHFVASPRHADCLLVTGPVTRNMADPL 104 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 ++T +ATP P++V+A GDCA + G+FA YGVVG V +VPVDV + GCPP+P+ I+A + Sbjct 105 KRTYDATPDPKIVVAVGDCARDCGIFAGGYGVVGPVSAIVPVDVVVGGCPPSPSMILAGI 164 >gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum AMB-1] gi|82944146|dbj|BAE49010.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum AMB-1] Length=178 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/120 (64%), Positives = 88/120 (74%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI P+YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 49 SLSIREVDAGSCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEAL 108 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 R+T+EATP PR ++A GDC + G FA +Y VVG V +VVPVD+ I GCPP+P I+A L Sbjct 109 RRTVEATPEPRWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQILAGL 168 >gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] gi|322395573|gb|EFX98118.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. ATCC 49242] Length=166 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 87/120 (73%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL +R VDAGSCNGCE+EI P YD ERFG R VASPRHAD L+VTG VT NM L Sbjct 35 SLSVRQVDAGSCNGCELEIHALSNPYYDLERFGLRFVASPRHADVLMVTGPVTKNMCEAL 94 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 ++T +ATP P+ V+A GDCA + GVFA +Y VGAV +VVPVD+ + GCPP P A++ L Sbjct 95 QRTYDATPNPKWVVAVGDCAFDGGVFAGSYACVGAVTKVVPVDLHVRGCPPDPIALLKGL 154 >gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2] gi|259022351|gb|EEW25648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2] Length=177 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 73/126 (58%), Positives = 88/126 (70%), Gaps = 0/126 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI+ P YD ERFG VASPRHAD LLVTG VT NMA L Sbjct 44 SLSIRQVDAGSCNGCELEINALSNPYYDLERFGLHFVASPRHADVLLVTGPVTRNMAEAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 +T ATP P+ V+ACGDCA + G FA +Y +VG V V+PVD+ I GCPP P A++ L Sbjct 104 ERTYAATPEPKWVVACGDCARDGGCFAGSYAIVGGVAAVLPVDLHIPGCPPNPTALLQGL 163 Query 154 RSVTGK 159 ++ + Sbjct 164 LALIER 169 >gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III small subunit [Magnetospirillum magnetotacticum MS-1] Length=180 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/116 (64%), Positives = 85/116 (74%), Gaps = 0/116 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI P+YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 49 SLSIREVDAGSCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEAL 108 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAI 149 R+T+EATP PR ++A GDC + G FA +Y VVG V +VVPVD+ I GCPP+P I Sbjct 109 RRTVEATPEPRWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQI 164 >gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW] gi|209958183|gb|ACI98819.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW] Length=196 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/120 (65%), Positives = 86/120 (72%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCN CE+EI PVYD ERFG VASPRHAD LLVTG VT NM L Sbjct 44 SLAIRQVDAGSCNACEMEIHALNNPVYDLERFGFSFVASPRHADVLLVTGPVTTNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 KT EATP P+ V+A G CA++ G FAD+Y VVG V +VVPVD+ I GCPP P I+AAL Sbjct 104 LKTWEATPDPKWVVALGQCAIDGGPFADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAAL 163 >gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisA53] gi|115516929|gb|ABJ04913.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisA53] Length=173 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/117 (63%), Positives = 84/117 (72%), Gaps = 0/117 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI YD ERFG R VASPRHAD LLVTG VT NMA L Sbjct 44 SLAIREVDAGSCNGCELEIHALNNAYYDIERFGLRFVASPRHADVLLVTGPVTKNMADAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIM 150 + T +ATP P+ V+ACGDCA + G FA +Y VVG V +V+PVD+ I GCPP P I+ Sbjct 104 KTTYDATPSPKWVVACGDCARDGGCFAGSYAVVGGVSQVIPVDLHIPGCPPPPLQIL 160 >gi|359791660|ref|ZP_09294505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium alhagi CCNWXJ12-2] gi|359252305|gb|EHK55571.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium alhagi CCNWXJ12-2] Length=179 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/120 (61%), Positives = 85/120 (71%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+E+ YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 44 SLSIRAVDAGSCNGCELEMQALNNAFYDFERFGLRFVASPRHADVLLVTGPVTKNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 ++T +ATP P+ V+A GDCA N G FA +Y VVG V EV+PVD+ I GCPP+P I+ L Sbjct 104 KRTWDATPNPKWVVALGDCARNGGCFAGSYAVVGGVSEVLPVDLHIPGCPPSPVEILKGL 163 >gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length=279 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/126 (59%), Positives = 87/126 (70%), Gaps = 0/126 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCEVEI+ GP+YD ERFG LVASPRHAD LLVTG VT NM L Sbjct 150 SLHIREVDAGSCNGCEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNMELAL 209 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 RKT +ATP PR+V+A G C + G+F Y G+V V+PVDV I GCPP P A++ + Sbjct 210 RKTYDATPEPRLVVAVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALLHGI 269 Query 154 RSVTGK 159 G+ Sbjct 270 LLAVGR 275 >gi|381168069|ref|ZP_09877271.1| Ni,Fe-hydrogenase III small subunit [Phaeospirillum molischianum DSM 120] gi|380682855|emb|CCG42087.1| Ni,Fe-hydrogenase III small subunit [Phaeospirillum molischianum DSM 120] Length=178 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/120 (62%), Positives = 86/120 (72%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI GPVYD ERFG R VASPRHAD LLVTG VT NM L Sbjct 49 SLAIREVDAGSCNGCELEIHAVNGPVYDLERFGIRFVASPRHADVLLVTGPVTANMVEAL 108 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 ++T EA P P+ V+A GDCA + G FA +Y V+G V V+PVD+ I GCPP P I++ L Sbjct 109 QRTHEAVPSPKWVVALGDCARDGGCFAGSYAVLGGVAAVLPVDLHIPGCPPEPTRILSGL 168 >gi|402773433|ref|YP_006592970.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. SC2] gi|401775453|emb|CCJ08319.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp. SC2] Length=171 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 82/120 (69%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 44 SLSIREVDAGSCNGCELEIHALSNAYYDLERFGLRFVASPRHADVLLVTGPVTKNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 +T ATP P+ VIA GDCA + GV+ ++Y VGAV VVPVD+ I GCPP P ++ L Sbjct 104 ERTYAATPDPKWVIAVGDCAFDGGVYCESYACVGAVANVVPVDLHIRGCPPDPTTLLKGL 163 >gi|344943807|ref|ZP_08783093.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter tundripaludum SV96] gi|344259465|gb|EGW19738.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter tundripaludum SV96] Length=171 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 82/162 (51%), Positives = 96/162 (60%), Gaps = 9/162 (5%) Query 1 MGWVAKIFRVGRVVEP-AAPLPAAIAEPPAGVR--------GSLQIRHVDAGSCNGCEVE 51 + KI G V EP AP A + + ++ GS+ IR VDAGSCNGCE+E Sbjct 2 LNIFKKILTTGVVTEPFKAPKDAELEQLGIEIKSRIDKKFSGSIAIRQVDAGSCNGCELE 61 Query 52 ISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGD 111 I P YD ERFG VASPRHAD LLVTG V+ +M L +T EATP P+ VIA GD Sbjct 62 IHALNNPFYDIERFGVHFVASPRHADVLLVTGPVSRHMQTALLRTYEATPNPKWVIAAGD 121 Query 112 CALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 CA G F +Y GAV V+PVDV I GCPPTP A+M L Sbjct 122 CAACGGEFGVSYASCGAVSNVIPVDVVIPGCPPTPLALMKGL 163 >gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4] gi|161075799|gb|ABX56647.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4] gi|189185388|gb|ACD82573.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4] Length=177 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/127 (57%), Positives = 86/127 (68%), Gaps = 1/127 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI P YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 51 SLAIREVDAGSCNGCELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMVEAL 110 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGA-VGEVVPVDVEIAGCPPTPAAIMAA 152 ++T + P P+ V+A GDCAL RGVF+ +Y VV V ++PVD+ I GCPPTP ++ Sbjct 111 KRTYDCMPHPKWVVAAGDCALGRGVFSQSYAVVKEGVEAIIPVDLRIDGCPPTPLDLLRG 170 Query 153 LRSVTGK 159 L + G Sbjct 171 LVYLLGN 177 >gi|386828842|ref|ZP_10115949.1| Ni,Fe-hydrogenase III small subunit [Beggiatoa alba B18LD] gi|386429726|gb|EIJ43554.1| Ni,Fe-hydrogenase III small subunit [Beggiatoa alba B18LD] Length=174 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/127 (58%), Positives = 86/127 (68%), Gaps = 0/127 (0%) Query 33 GSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGP 92 GSL IR VDAGSCN CE+EI P Y ERFG VASPRHADALLVTGVV+ +M Sbjct 44 GSLAIRQVDAGSCNACELEIHALNNPYYAIERFGVHFVASPRHADALLVTGVVSRHMQTA 103 Query 93 LRKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAA 152 L +T ATP P+ VIA GDCA+ G F +Y GAV +V+PVDV I+GCPPTP A++A Sbjct 104 LLRTYTATPAPKFVIAAGDCAVCGGEFGVSYASCGAVNQVIPVDVTISGCPPTPHALLAG 163 Query 153 LRSVTGK 159 + K Sbjct 164 ILQAIQK 170 >gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizobium japonicum USDA 110] gi|27354623|dbj|BAC51609.1| hycG [Bradyrhizobium japonicum USDA 110] Length=177 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/126 (58%), Positives = 85/126 (68%), Gaps = 0/126 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI YD ERFG R VASPRHAD L+VTG VT NM L Sbjct 44 SLSIREVDAGSCNGCELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 +T ATP P+ V+A GDCA + G FA +Y VVG V +VVPVD+ I GCPP P I+ L Sbjct 104 ERTYHATPDPKWVVAVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGL 163 Query 154 RSVTGK 159 ++ + Sbjct 164 LALLDQ 169 >gi|357024581|ref|ZP_09086730.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium amorphae CCNWGS0123] gi|355543543|gb|EHH12670.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium amorphae CCNWGS0123] Length=169 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 83/120 (70%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VD GSCNGCE+E+ YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 44 SLSIRAVDTGSCNGCELEMHALNNAFYDIERFGFRFVASPRHADVLLVTGPVTKNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 ++T +ATP P+ V+A GDCA N G FA +Y VVG V EV+PVD+ I GCPP P I+ L Sbjct 104 KRTWDATPNPKWVVALGDCARNGGCFAGSYAVVGGVSEVLPVDLHIPGCPPPPIEILKGL 163 >gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris HaA2] gi|86571418|gb|ABD05975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris HaA2] Length=177 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/146 (55%), Positives = 92/146 (64%), Gaps = 8/146 (5%) Query 16 PAAPLPAAIAEPPAGVRG--------SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGA 67 P AP AA+AE A + SL IR VDAGSCNGCE+EI YD ERFG Sbjct 18 PPAPDDAAVAELAARLDATARRMLGRSLSIREVDAGSCNGCELEIHALNNAYYDVERFGL 77 Query 68 RLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADAYGVVG 127 R VASPRHAD L+VTG VTHNM LR T +A P P+ V+A GDCA + G FA +Y V G Sbjct 78 RFVASPRHADVLMVTGPVTHNMREALRLTYDAVPGPKWVVAVGDCAKDGGCFAGSYAVAG 137 Query 128 AVGEVVPVDVEIAGCPPTPAAIMAAL 153 V V+PVD+ I GCPP+P I+ L Sbjct 138 GVSAVIPVDLHIPGCPPSPMQILRGL 163 >gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB5] gi|91684769|gb|ABE41071.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas palustris BisB5] Length=177 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/120 (60%), Positives = 82/120 (69%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI YD ERFG R VASPRHAD L+VTG VTHNM L Sbjct 44 SLAIREVDAGSCNGCELEIHALSNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 R T EA P P+ V+A GDCA + G FA +Y + G V V+PVD+ I GCPP+P I+ L Sbjct 104 RLTYEAVPGPKWVVATGDCAKDGGCFAGSYAITGGVSAVIPVDLHIPGCPPSPVQILRGL 163 >gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter nitrofigilis DSM 7299] gi|296096452|gb|ADG92402.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter nitrofigilis DSM 7299] Length=271 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/155 (48%), Positives = 97/155 (63%), Gaps = 1/155 (0%) Query 4 VAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAE 63 ++K + V +E + L A + E ++ S + VD GSCNGCE+E+ A P++D E Sbjct 1 MSKTYVVPEEIENSNTLEAKL-EHLKNIKRSFNVYRVDCGSCNGCEIEVFAAITPMWDPE 59 Query 64 RFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADAY 123 R G +LVASPRHAD LL +G VT M PL + EATP P+VV+A G C + G+F DAY Sbjct 60 RLGFKLVASPRHADILLCSGPVTRQMYYPLLRAYEATPDPKVVVAIGACGSSGGIFHDAY 119 Query 124 GVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTG 158 V G + +V+PVDV I GCPP PA I+ L S G Sbjct 120 SVWGGIDKVIPVDVYIPGCPPHPATIIHGLASALG 154 >gi|365900215|ref|ZP_09438090.1| HycG protein [Bradyrhizobium sp. STM 3843] gi|365419026|emb|CCE10632.1| HycG protein [Bradyrhizobium sp. STM 3843] Length=177 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 69/126 (55%), Positives = 85/126 (68%), Gaps = 0/126 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI YD ERFG + VASPRHAD L+VTG VT NM L Sbjct 44 SLSIREVDAGSCNGCELEIHALNNAYYDIERFGLKFVASPRHADVLMVTGPVTKNMRDAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 +T ATP P+ V+A GDCA + G FA +Y V G V +VVPVD+ I GCPP+P ++ L Sbjct 104 ERTYHATPNPKWVVAVGDCARDGGCFAGSYAVAGGVSQVVPVDLHIPGCPPSPTMVLQGL 163 Query 154 RSVTGK 159 ++ + Sbjct 164 LALLDR 169 >gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase small subunit [Candidatus Nitrospira defluvii] gi|300607590|emb|CBK43923.1| putative Formate hydrogenlyase, small subunit [Candidatus Nitrospira defluvii] Length=173 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 72/138 (53%), Positives = 90/138 (66%), Gaps = 0/138 (0%) Query 16 PAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRH 75 P+ P+ E R S+ IR VD GSCN CE+E++ PVYD ERFG + ASPRH Sbjct 24 PSEPIGPEAIEKAKPFRRSMTIREVDTGSCNACEMEMNALANPVYDVERFGVHIAASPRH 83 Query 76 ADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPV 135 ADAL+VTG VT NM L+ +AT P++VIA GDCA+N G+F +Y V G V +PV Sbjct 84 ADALVVTGPVTVNMERALKDVYKATADPKIVIALGDCAVNCGMFKGSYAVTGPVDRHIPV 143 Query 136 DVEIAGCPPTPAAIMAAL 153 DV I+GCPP PA I+A L Sbjct 144 DVRISGCPPRPAEILAVL 161 >gi|392377183|ref|YP_004984342.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Azospirillum brasilense Sp245] gi|356878664|emb|CCC99552.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Azospirillum brasilense Sp245] Length=173 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/113 (62%), Positives = 82/113 (73%), Gaps = 0/113 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI P+YD ERFG R VASPRHAD LLVTG V NM L Sbjct 44 SLSIREVDAGSCNGCELEIHALNNPIYDLERFGIRFVASPRHADVLLVTGPVARNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTP 146 ++ +ATP P+ ++ACGDCA++ G+FA Y VG V EV+PVD+ I GCPP P Sbjct 104 VRSWDATPGPKWLVACGDCAVSGGLFAGGYACVGPVEEVLPVDLRIPGCPPRP 156 >gi|384916584|ref|ZP_10016740.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum fumariolicum SolV] gi|384525999|emb|CCG92613.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum fumariolicum SolV] Length=178 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/121 (59%), Positives = 84/121 (70%), Gaps = 1/121 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI P YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 52 SLAIREVDAGSCNGCELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMIEAL 111 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVV-GAVGEVVPVDVEIAGCPPTPAAIMAA 152 ++T + TP P+ V+A GDCA GVF +Y V+ G V +VVPVD+ I GCPP+P ++ Sbjct 112 KRTYDCTPIPKWVVAVGDCAAGCGVFKQSYAVMNGGVSDVVPVDLWIYGCPPSPIDLLRG 171 Query 153 L 153 L Sbjct 172 L 172 >gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetospirillum gryphiswaldense MSR-1] Length=176 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/123 (62%), Positives = 90/123 (74%), Gaps = 0/123 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI PVYD ERFG + VASPRHAD LLVTG V+ NMA L Sbjct 48 SLAIRAVDAGSCNGCELEIHAVNHPVYDLERFGIKFVASPRHADVLLVTGPVSWNMAEAL 107 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 R+T+EATP PR V+A GDCA++ G FA +Y V G +VPVD+ I GCPPTP I+A L Sbjct 108 RRTVEATPEPRWVVAMGDCAIDGGCFAGSYAVAGGAAAIVPVDMTIPGCPPTPINIIAGL 167 Query 154 RSV 156 ++ Sbjct 168 LAL 170 >gi|389810005|ref|ZP_10205638.1| Hydrogenase-4 subunit I [Rhodanobacter thiooxydans LCS2] gi|388441285|gb|EIL97574.1| Hydrogenase-4 subunit I [Rhodanobacter thiooxydans LCS2] Length=170 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/164 (48%), Positives = 97/164 (60%), Gaps = 9/164 (5%) Query 4 VAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQ--------IRHVDAGSCNGCEVEISGA 55 +++I R GR+ EP P+P ++ L IRHVDAGSCNGCE+EI Sbjct 5 LSRIRRTGRLSEPY-PVPDTDQTASTAIQRELHAVFGRALCIRHVDAGSCNGCELEIHAL 63 Query 56 FGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALN 115 Y+ E G R VASPRHAD LLVTG V+ NM LR+T EA P P+ V+A GDCA+ Sbjct 64 SNAYYNLEGAGIRFVASPRHADVLLVTGPVSVNMEDALRQTYEAMPDPKWVLAVGDCAVC 123 Query 116 RGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159 G+F Y G + +VPVD +AGCPPTP AIM L +T K Sbjct 124 GGLFGANYATRGPISAIVPVDAVVAGCPPTPLAIMRGLLQITSK 167 >gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635313|gb|ACB96087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] Length=177 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/127 (57%), Positives = 86/127 (68%), Gaps = 1/127 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+EI+ YD ERFG R VASPRHAD LLVTG VTHNM L Sbjct 42 SLAIREVDAGSCNGCELEINALGNAFYDLERFGLRFVASPRHADVLLVTGPVTHNMREAL 101 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVV-GAVGEVVPVDVEIAGCPPTPAAIMAA 152 +T +ATP P+ V+A G CAL GVFA++Y G V V+ VD+ I GCPPTP ++ Sbjct 102 LRTYDATPNPKWVVAAGTCALGEGVFAESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKG 161 Query 153 LRSVTGK 159 L ++ K Sbjct 162 LLALITK 168 >gi|405382828|ref|ZP_11036605.1| Ni,Fe-hydrogenase III small subunit [Rhizobium sp. CF142] gi|397320756|gb|EJJ25187.1| Ni,Fe-hydrogenase III small subunit [Rhizobium sp. CF142] Length=177 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/126 (57%), Positives = 86/126 (69%), Gaps = 0/126 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCE+E+ YD ERFG R VASPRHAD LLVTG VT NM L Sbjct 44 SLSIRAVDAGSCNGCELEMHALSNAFYDIERFGIRFVASPRHADVLLVTGPVTSNMREAL 103 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 +T ATP P+ V+A G CA + G+FA +Y VVG V +VVPVD+ I GCPP+P I+ L Sbjct 104 ERTYNATPGPKWVVALGGCARDGGLFAGSYAVVGGVSKVVPVDLHIPGCPPSPIDILKGL 163 Query 154 RSVTGK 159 ++ + Sbjct 164 LALLDR 169 >gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [Methanocella arvoryzae MRE50] gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [Methanocella arvoryzae MRE50] Length=247 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/120 (59%), Positives = 84/120 (70%), Gaps = 0/120 (0%) Query 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPL 93 SL IR VDAGSCNGCEVE++ +YD ERFG +VASPRHADALLVTG VT NM L Sbjct 116 SLAIREVDAGSCNGCEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNMERGL 175 Query 94 RKTLEATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAAL 153 ++ ATP P++VIA G CA+ G+F D+Y V V +VPVDV I GCPP P AI+ + Sbjct 176 MQSYNATPDPKMVIAMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAIIQGI 235 Lambda K H 0.322 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 177456965510 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Oct 14, 2012 4:13 PM Number of letters in database: 7,218,481,314 Number of sequences in database: 21,062,489 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40