BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0084 Length=316 Score E Sequences producing significant alignments: (Bits) Value gi|254233482|ref|ZP_04926808.1| formate hydrogenlyase hycD [Myco... 596 2e-168 gi|15607226|ref|NP_214598.1| formate hydrogenlyase HYCD [Mycobac... 595 3e-168 gi|340625119|ref|YP_004743571.1| putative formate hydrogenlyase ... 589 2e-166 gi|298527476|ref|ZP_07014885.1| conserved hypothetical protein [... 496 2e-138 gi|342862431|ref|ZP_08719071.1| putative formate hydrogenlyase H... 487 1e-135 gi|118465610|ref|YP_884230.1| hydrogenase-4, C subunit, putative... 474 7e-132 gi|183981670|ref|YP_001849961.1| formate hydrogenlyase HycD [Myc... 470 1e-130 gi|118617493|ref|YP_905825.1| formate hydrogenlyase HycD [Mycoba... 467 1e-129 gi|296166649|ref|ZP_06849075.1| formate hydrogenlyase [Mycobacte... 446 3e-123 gi|240169556|ref|ZP_04748215.1| formate hydrogenlyase HycD [Myco... 409 2e-112 gi|333991244|ref|YP_004523858.1| formate hydrogenlyase HycD [Myc... 407 9e-112 gi|258653156|ref|YP_003202312.1| respiratory-chain NADH dehydrog... 338 9e-91 gi|269128893|ref|YP_003302263.1| respiratory-chain NADH dehydrog... 325 4e-87 gi|336178233|ref|YP_004583608.1| respiratory-chain NADH dehydrog... 318 8e-85 gi|331694630|ref|YP_004330869.1| respiratory-chain NADH dehydrog... 301 8e-80 gi|317126124|ref|YP_004100236.1| respiratory-chain NADH dehydrog... 295 1e-77 gi|289764200|ref|ZP_06523578.1| formate hydrogenlyase [Mycobacte... 291 7e-77 gi|258593561|emb|CBE69902.1| Similar to membrane-bound [NiFe]-hy... 272 7e-71 gi|302039530|ref|YP_003799852.1| putative formate hydrogenlyase,... 262 6e-68 gi|119718687|ref|YP_925652.1| putative formate hydrogenlyase Hyc... 258 8e-67 gi|333983294|ref|YP_004512504.1| hydrogenase subunit [Methylomon... 239 3e-61 gi|144898670|emb|CAM75534.1| NADH dehydrogenase [Magnetospirillu... 235 8e-60 gi|91202881|emb|CAJ72520.1| similar to membrane-bound [NiFe]-hyd... 234 2e-59 gi|147919457|ref|YP_686803.1| hydrogenase, membrane subunit 3-li... 233 4e-59 gi|344943802|ref|ZP_08783088.1| hydrogenase subunit [Methylobact... 230 2e-58 gi|344341649|ref|ZP_08772566.1| hydrogenase subunit [Thiocapsa m... 227 2e-57 gi|337266649|ref|YP_004610704.1| putative hydrogenase protein [M... 227 2e-57 gi|182414277|ref|YP_001819343.1| hydrogenase, membrane subunit 3... 226 3e-57 gi|296446949|ref|ZP_06888884.1| NADH dehydrogenase [Methylosinus... 225 6e-57 gi|182679426|ref|YP_001833572.1| NADH dehydrogenase [Beijerincki... 225 7e-57 gi|260575427|ref|ZP_05843426.1| NADH dehydrogenase [Rhodobacter ... 223 3e-56 gi|114775568|ref|ZP_01451136.1| hydrogenase subunit [Mariprofund... 222 5e-56 gi|83309309|ref|YP_419573.1| formate hydrogenlyase subunit 4 [Ma... 222 7e-56 gi|115522978|ref|YP_779889.1| respiratory-chain NADH dehydrogena... 220 2e-55 gi|344345383|ref|ZP_08776235.1| hydrogenase subunit [Marichromat... 220 2e-55 gi|91978317|ref|YP_570976.1| respiratory-chain NADH dehydrogenas... 219 5e-55 gi|312113078|ref|YP_004010674.1| NADH dehydrogenase [Rhodomicrob... 219 6e-55 gi|56477809|ref|YP_159398.1| formate hydrogenlyase membrane subu... 218 1e-54 gi|198283915|ref|YP_002220236.1| formate hydrogenlyase membrane ... 216 4e-54 gi|90422449|ref|YP_530819.1| respiratory-chain NADH dehydrogenas... 216 5e-54 gi|325288315|ref|YP_004264496.1| respiratory-chain NADH dehydrog... 215 1e-53 gi|89902060|ref|YP_524531.1| respiratory-chain NADH dehydrogenas... 214 1e-53 gi|27381451|ref|NP_772980.1| hydrogenlyase component [Bradyrhizo... 213 3e-53 gi|86748386|ref|YP_484882.1| respiratory-chain NADH dehydrogenas... 212 5e-53 gi|343917163|gb|EGV27972.1| hydrogenase subunit [Thiorhodococcus... 212 6e-53 gi|91786819|ref|YP_547771.1| respiratory-chain NADH dehydrogenas... 212 7e-53 gi|148260399|ref|YP_001234526.1| formate hydrogenlyase subunit 4... 212 8e-53 gi|299132785|ref|ZP_07025980.1| respiratory-chain NADH dehydroge... 210 3e-52 gi|339834212|gb|EGQ61992.1| hydrogenase-4, C subunit [Acidithiob... 209 7e-52 gi|338980410|ref|ZP_08631686.1| Formate hydrogenlyase subunit 4-... 208 1e-51 >gi|254233482|ref|ZP_04926808.1| formate hydrogenlyase hycD [Mycobacterium tuberculosis C] gi|308394377|ref|ZP_07491664.2| hypothetical protein TMLG_00822 [Mycobacterium tuberculosis SUMu012] gi|124603275|gb|EAY61550.1| formate hydrogenlyase hycD [Mycobacterium tuberculosis C] gi|308367706|gb|EFP56557.1| hypothetical protein TMLG_00822 [Mycobacterium tuberculosis SUMu012] gi|339293153|gb|AEJ45264.1| formate hydrogenlyase hycD [Mycobacterium tuberculosis CCDC5079] gi|339296802|gb|AEJ48912.1| formate hydrogenlyase hycD [Mycobacterium tuberculosis CCDC5180] Length=319 Score = 596 bits (1536), Expect = 2e-168, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT Sbjct 4 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 63 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT Sbjct 64 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 123 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF Sbjct 124 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 183 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA Sbjct 184 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 243 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL Sbjct 244 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 303 Query 301 LALLAVTAANFFTVGA 316 LALLAVTAANFFTVGA Sbjct 304 LALLAVTAANFFTVGA 319 >gi|15607226|ref|NP_214598.1| formate hydrogenlyase HYCD [Mycobacterium tuberculosis H37Rv] gi|15839465|ref|NP_334502.1| formate hydrogenlyase, subunit 4 [Mycobacterium tuberculosis CDC1551] gi|31791262|ref|NP_853755.1| formate hydrogenlyase HYCD [Mycobacterium bovis AF2122/97] 68 more sequence titles Length=316 Score = 595 bits (1534), Expect = 3e-168, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT Sbjct 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT Sbjct 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF Sbjct 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA Sbjct 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL Sbjct 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 Query 301 LALLAVTAANFFTVGA 316 LALLAVTAANFFTVGA Sbjct 301 LALLAVTAANFFTVGA 316 >gi|340625119|ref|YP_004743571.1| putative formate hydrogenlyase HYCD [Mycobacterium canettii CIPT 140010059] gi|340003309|emb|CCC42426.1| putative formate hydrogenlyase HYCD (FHL) [Mycobacterium canettii CIPT 140010059] Length=316 Score = 589 bits (1518), Expect = 2e-166, Method: Compositional matrix adjust. Identities = 313/316 (99%), Positives = 313/316 (99%), Gaps = 0/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MSYLAGAAQIGGVMVGAPLVIGMTRQVR RWEGRAGAGLLQPWRDLLKQLGKQQITPAGT Sbjct 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRGRWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT Sbjct 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF Sbjct 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA Sbjct 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLFLPWGIAGAAPTALDVL GVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL Sbjct 241 NLFLPWGIAGAAPTALDVLIGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 Query 301 LALLAVTAANFFTVGA 316 LALLAVTAANFFTV A Sbjct 301 LALLAVTAANFFTVQA 316 >gi|298527476|ref|ZP_07014885.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298497270|gb|EFI32564.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=316 Score = 496 bits (1277), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 306/316 (97%), Positives = 307/316 (98%), Gaps = 1/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT Sbjct 2 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 61 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT Sbjct 62 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 121 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF Sbjct 122 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 181 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVA T R +HLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA Sbjct 182 VALVIVIVAWTTR-SGSVRWSHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL Sbjct 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 Query 301 LALLAVTAANFFTVGA 316 LALLAVTAANFFTVGA Sbjct 301 LALLAVTAANFFTVGA 316 >gi|342862431|ref|ZP_08719071.1| putative formate hydrogenlyase HycD [Mycobacterium colombiense CECT 3035] gi|342130102|gb|EGT83436.1| putative formate hydrogenlyase HycD [Mycobacterium colombiense CECT 3035] Length=319 Score = 487 bits (1253), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 268/316 (85%), Positives = 290/316 (92%), Gaps = 0/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 +SY AGA Q+G V+ G+PLV+G+TRQVRARWEGR GAG+LQPW D++KQLGKQQI P GT Sbjct 4 LSYAAGATQLGAVVAGSPLVVGLTRQVRARWEGRVGAGVLQPWYDIVKQLGKQQIKPLGT 63 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T+VFAAAPVIVA +TLLIAAIAPLVATGSPLD SADLFAVVGLLF+GTVALTLAGIDTGT Sbjct 64 TVVFAAAPVIVAASTLLIAAIAPLVATGSPLDASADLFAVVGLLFVGTVALTLAGIDTGT 123 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALS+PAGSANLGALVA TI HPG VVSLA VLAF Sbjct 124 SFGGMGASREITIAALVEPTILLAVFALSMPAGSANLGALVAHTIAHPGGVVSLAAVLAF 183 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA Sbjct 184 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 243 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLF+PWGIA P A+ ++ G+VAV AKVA+LA +LAT EVF+AKLRLFRVPELLAGSF+ Sbjct 244 NLFVPWGIADGGPGAIGIVIGLVAVVAKVAVLAAVLATVEVFMAKLRLFRVPELLAGSFV 303 Query 301 LALLAVTAANFFTVGA 316 LALLAV AANFF V A Sbjct 304 LALLAVIAANFFGVPA 319 >gi|118465610|ref|YP_884230.1| hydrogenase-4, C subunit, putative [Mycobacterium avium 104] gi|118166897|gb|ABK67794.1| hydrogenase-4, C subunit, putative [Mycobacterium avium 104] Length=319 Score = 474 bits (1220), Expect = 7e-132, Method: Compositional matrix adjust. Identities = 272/313 (87%), Positives = 287/313 (92%), Gaps = 0/313 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MSY+AGAAQI VM GAPLVIG RQVRAR EGR G G+LQPWRDL KQLGKQQI+P GT Sbjct 4 MSYVAGAAQILAVMAGAPLVIGAMRQVRARLEGRGGGGVLQPWRDLRKQLGKQQISPQGT 63 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T+VFAAAP IVAGTTLLI AIAP+VATGSPLD +ADLFAVVGLLFLGTVALTLAGIDTGT Sbjct 64 TVVFAAAPAIVAGTTLLIVAIAPIVATGSPLDAAADLFAVVGLLFLGTVALTLAGIDTGT 123 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALV +TIDHPG VVSL G+LAF Sbjct 124 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVTNTIDHPGQVVSLTGLLAF 183 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWA+GMRLTVLLALLA Sbjct 184 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWASGMRLTVLLALLA 243 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLFLPWGIAG P+A+DV G+ A+ AKV +LAV LA EVF+AKLRLFRVPELLAGSFL Sbjct 244 NLFLPWGIAGGHPSAVDVAIGLAAITAKVTVLAVALAGAEVFIAKLRLFRVPELLAGSFL 303 Query 301 LALLAVTAANFFT 313 LALLAVTAANFFT Sbjct 304 LALLAVTAANFFT 316 >gi|183981670|ref|YP_001849961.1| formate hydrogenlyase HycD [Mycobacterium marinum M] gi|183174996|gb|ACC40106.1| formate hydrogenlyase HycD [Mycobacterium marinum M] Length=319 Score = 470 bits (1210), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 254/313 (82%), Positives = 283/313 (91%), Gaps = 0/313 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MS +AGAAQIG V++GAPLVIG+ RQ+RAR EGR GAG+LQPWRDL KQL KQQ+TP GT Sbjct 4 MSAMAGAAQIGAVILGAPLVIGLMRQIRARSEGRCGAGILQPWRDLRKQLRKQQVTPEGT 63 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T VFA AP +VA TTLLIAAIAPLVATGSPLDP DLF VVGLLFLGTVALTLAGIDTGT Sbjct 64 TAVFAVAPAVVAATTLLIAAIAPLVATGSPLDPVGDLFVVVGLLFLGTVALTLAGIDTGT 123 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPA SANLGA+VA ++++P VVSLAG+LAF Sbjct 124 SFGGMGASREITIAALVEPTILLAVFALSIPAKSANLGAIVAFSLENPAEVVSLAGILAF 183 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIV++AETGRLPVDNPATHLELTMVHEAMVLEYAGPRL ++EWA+GMRLTVLLALLA Sbjct 184 VALVIVVIAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLGVIEWASGMRLTVLLALLA 243 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLF+PWGIAGA P+ + + G+ A++ KVAI A +LAT EVF+AKLRLFRVPELLAGSFL Sbjct 244 NLFVPWGIAGADPSLIGIAVGIAAISIKVAIAAGVLATVEVFIAKLRLFRVPELLAGSFL 303 Query 301 LALLAVTAANFFT 313 LALLAVT+ANFFT Sbjct 304 LALLAVTSANFFT 316 >gi|118617493|ref|YP_905825.1| formate hydrogenlyase HycD [Mycobacterium ulcerans Agy99] gi|118569603|gb|ABL04354.1| formate hydrogenlyase HycD [Mycobacterium ulcerans Agy99] Length=316 Score = 467 bits (1201), Expect = 1e-129, Method: Compositional matrix adjust. Identities = 253/313 (81%), Positives = 282/313 (91%), Gaps = 0/313 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 MS +AGAAQIG V++GAPLVIG+ RQ+RAR EGR GAG+LQPWRDL KQL KQQ+TP GT Sbjct 1 MSAMAGAAQIGAVILGAPLVIGLMRQIRARSEGRCGAGILQPWRDLHKQLRKQQVTPEGT 60 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T VFA AP +VA TTLLIAAIAPLVATGSPLDP DLF VVGLLFLGTVALTLAGIDTGT Sbjct 61 TAVFAVAPAVVAATTLLIAAIAPLVATGSPLDPVGDLFVVVGLLFLGTVALTLAGIDTGT 120 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPA SANLGA+VA ++++P VVSLAG+LAF Sbjct 121 SFGGMGASREITIAALVEPTILLAVFALSIPAKSANLGAIVAFSLENPAEVVSLAGILAF 180 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIV++AETGRL VDNPATHLELTMVHEAMVLEYAGPRL ++EWA+GMRLTVLLALLA Sbjct 181 VALVIVVIAETGRLSVDNPATHLELTMVHEAMVLEYAGPRLGVIEWASGMRLTVLLALLA 240 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLF+PWGIAGA P+ + + G+ A++ KVAI A +LAT EVF+AKLRLFRVPELLAGSFL Sbjct 241 NLFVPWGIAGADPSLIGIAVGIAAISIKVAIAAGVLATVEVFIAKLRLFRVPELLAGSFL 300 Query 301 LALLAVTAANFFT 313 LALLAVT+ANFFT Sbjct 301 LALLAVTSANFFT 313 >gi|296166649|ref|ZP_06849075.1| formate hydrogenlyase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897984|gb|EFG77564.1| formate hydrogenlyase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=319 Score = 446 bits (1146), Expect = 3e-123, Method: Compositional matrix adjust. Identities = 276/316 (88%), Positives = 291/316 (93%), Gaps = 0/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 +S +AGAAQI VM GAPLV+G+TRQVRARWEGRAGAG+LQPWRD++KQLGKQQITP GT Sbjct 4 VSCVAGAAQIFAVMAGAPLVVGLTRQVRARWEGRAGAGVLQPWRDIVKQLGKQQITPNGT 63 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T+VFAAAP IVAGTTLLIAAIAPLVATGSPLD SADLFAVVGLLF+GTVALTLAGIDTGT Sbjct 64 TVVFAAAPAIVAGTTLLIAAIAPLVATGSPLDGSADLFAVVGLLFVGTVALTLAGIDTGT 123 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALS+PAGSANLGALV+ TI HPG VVSLA VLAF Sbjct 124 SFGGMGASREITIAALVEPTILLAVFALSMPAGSANLGALVSHTITHPGQVVSLAAVLAF 183 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 ALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA Sbjct 184 AALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 243 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLF PWGIAG P A+ VL G+ AVAAKVA+LA LAT EVF+AKLRLFRVPELLAGSFL Sbjct 244 NLFAPWGIAGDKPGAVAVLVGLAAVAAKVAVLAASLATMEVFVAKLRLFRVPELLAGSFL 303 Query 301 LALLAVTAANFFTVGA 316 LALLAV AANFF V A Sbjct 304 LALLAVVAANFFAVPA 319 >gi|240169556|ref|ZP_04748215.1| formate hydrogenlyase HycD [Mycobacterium kansasii ATCC 12478] Length=319 Score = 409 bits (1052), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 260/316 (83%), Positives = 285/316 (91%), Gaps = 0/316 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 +S +AGAAQIG VM GAPLV+G+ RQVRAR EGR GAG+LQPWRDL KQL KQQ+TP GT Sbjct 4 LSAVAGAAQIGAVMTGAPLVVGLMRQVRARSEGRCGAGVLQPWRDLRKQLRKQQVTPDGT 63 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T+VFAAAPV+VA TTLLIAAIAPL ATGSPLD ADLF VVGLLFLGTVALTLAGIDTGT Sbjct 64 TLVFAAAPVVVAATTLLIAAIAPLAATGSPLDSVADLFVVVGLLFLGTVALTLAGIDTGT 123 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGA+VA ++++P +VSLAG+LAF Sbjct 124 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGAVVAFSLENPAEMVSLAGILAF 183 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIV++AETGRLPVDNPATHLELTMVHEAMVLEYAGP+LALVEWA+GMRLTVLLALLA Sbjct 184 VALVIVVIAETGRLPVDNPATHLELTMVHEAMVLEYAGPKLALVEWASGMRLTVLLALLA 243 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLF PWGIAG P+ + V GV AVA KVA+ AV+LA EVF+AKLRLFRVPELLAGSFL Sbjct 244 NLFFPWGIAGDRPSLVGVGIGVAAVAIKVAVAAVVLAGAEVFIAKLRLFRVPELLAGSFL 303 Query 301 LALLAVTAANFFTVGA 316 LALLAVT+ANFFT A Sbjct 304 LALLAVTSANFFTAQA 319 >gi|333991244|ref|YP_004523858.1| formate hydrogenlyase HycD [Mycobacterium sp. JDM601] gi|333487212|gb|AEF36604.1| formate hydrogenlyase HycD [Mycobacterium sp. JDM601] Length=317 Score = 407 bits (1047), Expect = 9e-112, Method: Compositional matrix adjust. Identities = 251/313 (81%), Positives = 273/313 (88%), Gaps = 0/313 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 M+YLAG Q+ GV+ GAPLVIG+ RQVRAR EGR GAG+ QPWRD+ K LGKQ + P GT Sbjct 1 MTYLAGFLQVAGVIAGAPLVIGLMRQVRARAEGRTGAGIRQPWRDMRKLLGKQLLNPRGT 60 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 T FAAAP +A TTL+I A APLVATGSPLDP ADL VVGLLFLGTVAL LAGIDT T Sbjct 61 TWAFAAAPAALAATTLVIVAAAPLVATGSPLDPVADLITVVGLLFLGTVALALAGIDTAT 120 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 +FGGMGASREITIAALVEPTILLAVFALSIPAGSANL A+V +T+DHPG VVSLA LAF Sbjct 121 AFGGMGASREITIAALVEPTILLAVFALSIPAGSANLSAIVGNTVDHPGQVVSLASALAF 180 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGP+LALVEWA+GMRLTVLLALLA Sbjct 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPKLALVEWASGMRLTVLLALLA 240 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 NLF PWGIAGA P+ LDV+ GV A+A KVA+LA LA EVF+A+LRLFRVPELLAGSFL Sbjct 241 NLFFPWGIAGAHPSLLDVVVGVGAIAIKVALLATALAAVEVFIARLRLFRVPELLAGSFL 300 Query 301 LALLAVTAANFFT 313 LALLAVTAANFF+ Sbjct 301 LALLAVTAANFFS 313 >gi|258653156|ref|YP_003202312.1| respiratory-chain NADH dehydrogenase subunit 1 [Nakamurella multipartita DSM 44233] gi|258556381|gb|ACV79323.1| respiratory-chain NADH dehydrogenase, subunit 1 [Nakamurella multipartita DSM 44233] Length=316 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 204/313 (66%), Positives = 244/313 (78%), Gaps = 3/313 (0%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 M+ L Q+ V+ +PL+IG+ RQVRAR EGRAGAG+ QPWRDL K + K+ + P GT Sbjct 5 MAGLGSLLQVLIVLALSPLLIGLMRQVRARLEGRAGAGVGQPWRDLRKLMRKRPVAPQGT 64 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 ++VF AP+++ T L++A +AP V L P +DLFAVV LL LGTVAL LAGIDTGT Sbjct 65 SVVFRTAPLVLVATCLVVAVVAPFVTATPALSPVSDLFAVVALLTLGTVALALAGIDTGT 124 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 +FGG+GASRE TI ALVEPT+L+A+FALS+P GS NLGA+VAST+ P V+S +LA Sbjct 125 AFGGLGASRESTIIALVEPTLLVAIFALSVPVGSTNLGAIVASTLADPAGVLSPVSLLAA 184 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 ALV+VI+AETGRLPVDNP+THLELTMVHEAM+LEY+GP LALVE AA MRLTV L LLA Sbjct 185 AALVVVIIAETGRLPVDNPSTHLELTMVHEAMILEYSGPDLALVELAAAMRLTVFLGLLA 244 Query 241 NLFLPWGIA-GAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSF 299 NLFLPWGIA G+ P LD+ GVVA AKVA+L LLA EVFLAKLRLFRVPELLAGSF Sbjct 245 NLFLPWGIATGSGP--LDLGVGVVAFVAKVAVLGTLLAAGEVFLAKLRLFRVPELLAGSF 302 Query 300 LLALLAVTAANFF 312 ++ LLAV A+ F Sbjct 303 VMGLLAVGASFFL 315 >gi|269128893|ref|YP_003302263.1| respiratory-chain NADH dehydrogenase subunit 1 [Thermomonospora curvata DSM 43183] gi|268313851|gb|ACZ00226.1| respiratory-chain NADH dehydrogenase, subunit 1 [Thermomonospora curvata DSM 43183] Length=307 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 195/293 (67%), Positives = 225/293 (77%), Gaps = 6/293 (2%) Query 7 AAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAA 66 AAQ+ + VG+P ++G+ RQVRAR EGRAGAG+ QP RDL K L K+ I P GT +F A Sbjct 5 AAQVVLIGVGSPFLVGLMRQVRARLEGRAGAGIAQPMRDLRKLLRKEPIAPHGTGWLFRA 64 Query 67 APVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMG 126 AP+++A T L++AA+ P T SPLDP+ADLFAV LL LGTVAL L G+DTGT+FGGMG Sbjct 65 APLVLAATALVVAAVGPFATTDSPLDPAADLFAVTALLALGTVALALGGLDTGTAFGGMG 124 Query 127 ASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIV 186 ASRE+T+ ALVEPTILLAVFALSI GS NLG + AS + P VVS +LA VAL+IV Sbjct 125 ASREMTVMALVEPTILLAVFALSIRVGSTNLGQIAASVAEDPLSVVSPVSLLAAVALIIV 184 Query 187 IVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPW 246 VAETGR+PVDNPATHLELTM+HEAMVLEYAGP LAL+EWA+ MRLTVLL L A LF PW Sbjct 185 TVAETGRIPVDNPATHLELTMIHEAMVLEYAGPDLALIEWASAMRLTVLLGLFAGLFTPW 244 Query 247 GIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSF 299 GI A P AL V A KVA+L LLA EVF+AKLRLFRVPELLAGSF Sbjct 245 GITLALPLALAVF------ALKVAVLGALLAAAEVFMAKLRLFRVPELLAGSF 291 >gi|336178233|ref|YP_004583608.1| respiratory-chain NADH dehydrogenase subunit 1 [Frankia symbiont of Datisca glomerata] gi|334859213|gb|AEH09687.1| respiratory-chain NADH dehydrogenase subunit 1 [Frankia symbiont of Datisca glomerata] Length=317 Score = 318 bits (814), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 194/307 (64%), Positives = 231/307 (76%), Gaps = 2/307 (0%) Query 9 QIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAP 68 Q+ V+ GAPL+ G+ RQVRAR EGRAGAG+ QPWRDL K L KQ ITP GT F AP Sbjct 12 QVTVVVAGAPLLTGLMRQVRARMEGRAGAGVGQPWRDLRKLLRKQPITPVGTGPAFRLAP 71 Query 69 VIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGAS 128 +++ TTL++AA+ PL +T +P+ SADL VV LL LGTV L LAG+DTGT+FGGMGAS Sbjct 72 LLLVATTLVVAALVPLASTATPVRDSADLLVVVTLLALGTVILALAGLDTGTAFGGMGAS 131 Query 129 REITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIV 188 RE+T+ ALVEPTILL+V ALSIPAGS NL A+VA + P + S A +LA VAL +V + Sbjct 132 REMTVVALVEPTILLSVVALSIPAGSTNLPAIVAHGVHDPARLASPASLLAGVALAVVTL 191 Query 189 AETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGI 248 AETGRLPVDNP+THLELTM+HEAM+LEYAGP LAL+E A MRLTVLL LL +LF+PWGI Sbjct 192 AETGRLPVDNPSTHLELTMIHEAMILEYAGPDLALIELGAQMRLTVLLGLLTSLFVPWGI 251 Query 249 AGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTA 308 A A + + A KVA+L LA EVF AK+RLF+VPELLAGSFLLALLAV Sbjct 252 ATGT-AAAALPLALALFAGKVALLGAGLAAAEVFWAKMRLFKVPELLAGSFLLALLAV-G 309 Query 309 ANFFTVG 315 A+FF G Sbjct 310 ASFFLPG 316 >gi|331694630|ref|YP_004330869.1| respiratory-chain NADH dehydrogenase subunit 1 [Pseudonocardia dioxanivorans CB1190] gi|326949319|gb|AEA23016.1| respiratory-chain NADH dehydrogenase subunit 1 [Pseudonocardia dioxanivorans CB1190] Length=315 Score = 301 bits (771), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 188/294 (64%), Positives = 226/294 (77%), Gaps = 1/294 (0%) Query 16 GAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTT 75 GAPL++G+ RQVRAR EGRAG G+ QPWRDL K + KQ I+P GTT VF APV++ T Sbjct 19 GAPLLLGLMRQVRARLEGRAGPGVGQPWRDLRKLVRKQSISPRGTTEVFRVAPVLLVAMT 78 Query 76 LLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAA 135 L++A +APLV T S + P ADLF VV LL TV + LAG+D+GT+FGGMGASRE+T+ A Sbjct 79 LVVAVVAPLVTTASAVPPVADLFVVVALLAHATVVIALAGLDSGTAFGGMGASREVTVLA 138 Query 136 LVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLP 195 LVEPT L+A+FALS+P GS +L +V + +D P ++S A +LA VAL VIVAETGRLP Sbjct 139 LVEPTALVAIFALSVPTGSTSLPTIVGTALDDPQRLISPASLLAAVALAAVIVAETGRLP 198 Query 196 VDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTA 255 VDNP+THLELTM+HEAMVLEYAGP LALVE + MRL+V L L +LF+PWGIA A T Sbjct 199 VDNPSTHLELTMIHEAMVLEYAGPDLALVELGSAMRLSVYLGLFTSLFVPWGIATTA-TP 257 Query 256 LDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTAA 309 L + GVVA+ KV ++ LA EVFLAKLRLFRVPELLAGSFLLALLAVT A Sbjct 258 LALALGVVALVVKVGVVGAGLAALEVFLAKLRLFRVPELLAGSFLLALLAVTTA 311 >gi|317126124|ref|YP_004100236.1| respiratory-chain NADH dehydrogenase, subunit 1 [Intrasporangium calvum DSM 43043] gi|315590212|gb|ADU49509.1| respiratory-chain NADH dehydrogenase, subunit 1 [Intrasporangium calvum DSM 43043] Length=319 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 171/291 (59%), Positives = 214/291 (74%), Gaps = 3/291 (1%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G+ RQVRAR EGR G G+ QPWRDL K L K+ I+P G+++VF AAP + +L++ A+ Sbjct 29 GLMRQVRARLEGRVGGGVGQPWRDLRKLLRKEAISPEGSSLVFVAAPAVALSASLVVVAV 88 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 AP + TGSPLD ADL+AVV L+ LG+VA LAG+DTG++FGGMG+SR + +AAL EPT+ Sbjct 89 APFIVTGSPLDAVADLYAVVSLMLLGSVAFALAGLDTGSAFGGMGSSRTMMVAALAEPTL 148 Query 142 LLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPAT 201 LL FAL++ GS+NLG LV + PG V S A +LA AL IV+VAE GRLPVDNP T Sbjct 149 LLTGFALAVRVGSSNLGQLVDRSQQAPGEVFSPAVLLAAAALAIVVVAEAGRLPVDNPTT 208 Query 202 HLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAA-PTALDVLT 260 HLELTM+HEA +LEYAG LA+VE A+ +RLT+LL L NLFLPWGI GAA P AL + Sbjct 209 HLELTMIHEATILEYAGRDLAVVELASSIRLTILLGLWVNLFLPWGIPGAATPVALAL-- 266 Query 261 GVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTAANF 311 G + KV + A L+ EVF+AK RLFRVPELLAGSFL +LAV+ + F Sbjct 267 GALVFLLKVGLAAAALSAAEVFMAKWRLFRVPELLAGSFLFGVLAVSTSFF 317 >gi|289764200|ref|ZP_06523578.1| formate hydrogenlyase [Mycobacterium tuberculosis GM 1503] gi|289711706|gb|EFD75722.1| formate hydrogenlyase [Mycobacterium tuberculosis GM 1503] Length=156 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 155/156 (99%), Positives = 156/156 (100%), Gaps = 0/156 (0%) Query 161 VASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPR 220 +ASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPR Sbjct 1 MASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPR 60 Query 221 LALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFE 280 LALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFE Sbjct 61 LALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFE 120 Query 281 VFLAKLRLFRVPELLAGSFLLALLAVTAANFFTVGA 316 VFLAKLRLFRVPELLAGSFLLALLAVTAANFFTVGA Sbjct 121 VFLAKLRLFRVPELLAGSFLLALLAVTAANFFTVGA 156 >gi|258593561|emb|CBE69902.1| Similar to membrane-bound [NiFe]-hydrogenase-3, subunit D [NC10 bacterium 'Dutch sediment'] Length=314 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 154/298 (52%), Positives = 212/298 (72%), Gaps = 3/298 (1%) Query 15 VGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGT 74 +GAPL++G+ R+V+AR +GR GAGLLQP+ DL K L K+ + T+ +F P ++A T Sbjct 17 LGAPLLVGLVRRVKARLQGRRGAGLLQPYADLRKLLAKEAVVSETTSWIFRFTPYLLAAT 76 Query 75 TLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIA 134 LL A + PL+ T +PL ++ ++ L LGT L LAG+D G++FGGMG+SRE+ +A Sbjct 77 MLLSALLVPLLTTRTPLGFLGNIIVLMYLFLLGTFFLALAGLDAGSAFGGMGSSREMAVA 136 Query 135 ALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRL 194 AL EPT+++A+FA+++ AG+ L ++ +++ +LAF+A IV +AETGRL Sbjct 137 ALAEPTVMIAIFAIALRAGNTGLDEIIRRGAADSLLLLTPGHLLAFMAFFIVAIAETGRL 196 Query 195 PVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIA-GAAP 253 PVDNPATHLELTM+HEAMVLEY+G L L+EWAAGM+L + LALL+NLF PWG+A P Sbjct 197 PVDNPATHLELTMIHEAMVLEYSGRHLMLIEWAAGMKLLIFLALLSNLFFPWGVALTVTP 256 Query 254 TALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTAANF 311 AL V VA+ AKV++LAV +A E +AKLRLFR+P LL+GSF LALLAV + F Sbjct 257 PALAV--AFVALVAKVSVLAVGIAVLETAVAKLRLFRLPALLSGSFALALLAVISFLF 312 >gi|302039530|ref|YP_003799852.1| putative formate hydrogenlyase, membrane subunit [Candidatus Nitrospira defluvii] gi|300607594|emb|CBK43927.1| putative Formate hydrogenlyase, membrane subunit [Candidatus Nitrospira defluvii] Length=318 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 142/292 (49%), Positives = 205/292 (71%), Gaps = 4/292 (1%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 +P V+G+ R+V+AR + R GA L QP+ DL K KQ + + T+ +F AAP IV +T+ Sbjct 21 SPFVVGLIRKVKARLQCRRGASLFQPYADLAKLFRKQPVISSTTSWIFTAAPYIVFASTV 80 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 + P+ + +PL+ + ++ A+V LL LGT L LAG+D G++FGGMG+SRE +A L Sbjct 81 AAGLLMPVFVSHTPLNFAGNIIALVYLLALGTFFLILAGLDAGSAFGGMGSSREAIVATL 140 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVS-LAGVLAFVALVIVIVAETGRLP 195 EP ++L++ ++++ AGS NL +V + G VV+ A ++A AL IV +AETGR+P Sbjct 141 AEPAMMLSILSIALTAGSTNLSTIVHQSALMEGVVVAPPAHLMALAALFIVTLAETGRVP 200 Query 196 VDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGA-APT 254 VDNPATHLELTM+HEAM+LEY+G LAL+EWAAG++L V L L+ N+F PWGIA + AP+ Sbjct 201 VDNPATHLELTMIHEAMLLEYSGRYLALMEWAAGIKLLVFLTLIVNVFAPWGIATSLAPS 260 Query 255 ALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAV 306 A+ V G++ KVA LA+++ E AKLRLFRVPE+L +F+L+LLA+ Sbjct 261 AIAV--GLLVYLGKVAALALVIGVIESMFAKLRLFRVPEMLGAAFILSLLAL 310 >gi|119718687|ref|YP_925652.1| putative formate hydrogenlyase HycD (FHL) [Nocardioides sp. JS614] gi|119539348|gb|ABL83965.1| putative formate hydrogenlyase HycD (FHL) [Nocardioides sp. JS614] Length=316 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 165/293 (57%), Positives = 217/293 (75%), Gaps = 1/293 (0%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 +PL++G+ RQVRAR EGRAGAG+LQPWRDL K LGK+ +T G + + AA P+++ ++L Sbjct 20 SPLLVGVMRQVRARLEGRAGAGVLQPWRDLRKLLGKEPLTADGVSWISAAGPLVLVASSL 79 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 L+ A+ P++ T + DLF VV L +G+VAL L G+D GT+FGGMG+SR + IAAL Sbjct 80 LLCALTPVLGTATLDRVPNDLFVVVAALLIGSVALALVGLDAGTAFGGMGSSRHMMIAAL 139 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPV 196 VEPT+L++V+ALSIP GS+ L +V + +DHP + S +LA + L I IVAET RLP+ Sbjct 140 VEPTVLVSVYALSIPVGSSVLSHIVEARLDHPATIWSPVSLLALLGLAIAIVAETARLPI 199 Query 197 DNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTAL 256 DNP+THLELTMVHEAMVLE +G LA +E + +RL LL LLA L PWG+A TAL Sbjct 200 DNPSTHLELTMVHEAMVLESSGRDLAWLELGSWLRLGALLGLLATLLAPWGVATEV-TAL 258 Query 257 DVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTAA 309 ++ V A+ K+A++ LLA EVFLAK+RLFRVPELLAGSF+LALLAVTA+ Sbjct 259 GLVVAVGALVLKLALIGALLAAVEVFLAKVRLFRVPELLAGSFVLALLAVTAS 311 >gi|333983294|ref|YP_004512504.1| hydrogenase subunit [Methylomonas methanica MC09] gi|333807335|gb|AEG00005.1| hydrogenase subunit [Methylomonas methanica MC09] Length=314 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/305 (44%), Positives = 197/305 (65%), Gaps = 4/305 (1%) Query 1 MSYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGT 60 M++L Q + APL+ G + + + R LLQP+RDLLK + KQ + Sbjct 1 MNWLLAVIQTLLFVALAPLLSGWLKWCKCHLQNRNAPSLLQPYRDLLKLIRKQPVVAEHA 60 Query 61 TIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGT 120 + +F +P I+ +L A++ PL+A P SAD+ +VG L LAG+D GT Sbjct 61 SWIFTRSPYIIFSAMVLAASVVPLIALDLPTAASADVIVLVGFFAFARFFLALAGLDIGT 120 Query 121 SFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAF 180 +FGGMG+SRE+TI++L EP +L+AVF L++ A + NL +L + + + G V+ + V A Sbjct 121 AFGGMGSSREMTISSLAEPAMLMAVFTLTMTASTTNL-SLAITHVLNEGLVLRPSFVFAM 179 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 AL++V +AETGR+PVDNP THLELTM+HEAM+LEY+G LAL+EWA+ ++L + L+A Sbjct 180 FALILVAIAETGRVPVDNPTTHLELTMIHEAMILEYSGRHLALIEWASQLKLMLYGVLIA 239 Query 241 NLFLPWGIAGAAPTALDVL-TGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSF 299 N+FLPWGI A + L G++A++ K+A LA+ LA E +AK+RLFRV E L+ ++ Sbjct 240 NIFLPWGI--AQDFSFHALGYGLLAISCKLAALAIFLAISETLVAKMRLFRVQEYLSFAY 297 Query 300 LLALL 304 LL LL Sbjct 298 LLGLL 302 >gi|144898670|emb|CAM75534.1| NADH dehydrogenase [Magnetospirillum gryphiswaldense MSR-1] Length=315 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 139/287 (49%), Positives = 185/287 (65%), Gaps = 3/287 (1%) Query 9 QIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAP 68 QI V+ APL+ G R V+AR GR G +QP+RDL + L K+ I + +F AAP Sbjct 10 QIILVVALAPLITGYVRWVKARLNGRRGPSPIQPYRDLYRLLQKEAIVAHSASWIFRAAP 69 Query 69 VIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGAS 128 + + L A I P T L P+ADL A+V LL +G LAG+D GT+FGG+GAS Sbjct 70 YVTFASVWLAACIVPTFTTNMVLAPAADLIALVALLAVGRFWTALAGMDVGTAFGGLGAS 129 Query 129 REITIAALVEPTILLAVFALSIPAGSANLGALVASTI-DHPGHVVSLAGVLAFVALVIVI 187 RE+ IA+L EP +L+ F+LS+ +G+ G +VA + + G VSL LA ALV+V Sbjct 130 REMLIASLAEPAMLMVTFSLSLISGTTAPGQIVAFVLAGNVGVEVSLG--LALAALVMVA 187 Query 188 VAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWG 247 +AE GR+P+DNPATHLELTMVHEAMVLEY+G LA++E A+ +RLT+ +AL+A LF PWG Sbjct 188 IAENGRIPIDNPATHLELTMVHEAMVLEYSGRHLAMIEAASMVRLTLFIALIATLFAPWG 247 Query 248 IAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 IA L VL G+ A AK +LA LA FE +AK+R+FR + Sbjct 248 IAQPGAGPLGVLVGMGAFLAKTFLLASALAVFETSIAKMRVFRYADF 294 >gi|91202881|emb|CAJ72520.1| similar to membrane-bound [NiFe]-hydrogenase-3, subunit D [Candidatus Kuenenia stuttgartiensis] Length=312 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/295 (44%), Positives = 195/295 (67%), Gaps = 9/295 (3%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 APLV G ++ A W+ R G + QP+ +L+K L K + + +F+A P +V + L Sbjct 19 APLVKGFINKMEAYWQCRRGPSMFQPYYNLIKLLQKDVVVSETASWIFSATPYVVFVSIL 78 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 +IA + P+++ PLD + D+ +V L LG L L+ +DTG++FGGMG SRE+TI+++ Sbjct 79 VIALLIPVLSAQVPLDFTGDIILIVYLFALGRFFLALSSLDTGSAFGGMGGSREMTISSM 138 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPV 196 EP ++L++F +S+ AGS NL ++ + +++ ++ + +LAF AL IVIVAETGR+PV Sbjct 139 AEPAMMLSIFTVSLTAGSTNLSSITGTLLNYKS--LNPSLLLAFAALAIVIVAETGRIPV 196 Query 197 DNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTAL 256 DNP THLELTM+HE M+LE++G LAL+EWA+ M+L +LL +L N FLPWGIA T L Sbjct 197 DNPFTHLELTMIHEGMILEFSGRYLALIEWASSMKLLLLLTILVNTFLPWGIA----TDL 252 Query 257 DVLTGVVAVA---AKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTA 308 +++ A K+ A + E+ +KLRLFR+P LL SF+L++LA+ + Sbjct 253 TFPGMIISFAWYLVKIGFFAFAIVILELSFSKLRLFRIPNLLGTSFVLSVLAIIS 307 >gi|147919457|ref|YP_686803.1| hydrogenase, membrane subunit 3-like protein (EchB-like) [uncultured methanogenic archaeon RC-I] gi|110622199|emb|CAJ37477.1| hydrogenase, membrane subunit 3-like protein (EchB-like) [uncultured methanogenic archaeon RC-I] Length=313 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 127/293 (44%), Positives = 193/293 (66%), Gaps = 4/293 (1%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 +PL+ G+ R+++A + R GA + QP+ DL K K+ + + + VF P + L Sbjct 20 SPLITGVIRKLKALMQSRKGASVFQPYFDLYKLFRKESVVSSNASWVFHLTPYVCMAAVL 79 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 + + P+++T S L DL VV +L + + L+ +DTG++FGGMG+SRE+TI+A+ Sbjct 80 VAVLMVPVISTTS-LSFMGDLIVVVYMLTMMRFFMALSALDTGSAFGGMGSSREMTISAI 138 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPV 196 EPT+LLA+F +++ AG+ +LG + + ++ + L F AL IV +AE R+PV Sbjct 139 AEPTMLLAIFTMALIAGTTSLGDISYQLSVNGLELIRPSLFLGFAALFIVTLAENARVPV 198 Query 197 DNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGA-APTA 255 DNPATHLELTM+HE M+LEY+G +LAL+E ++ ++L + L +LAN+FLPWGIA + AP Sbjct 199 DNPATHLELTMIHEGMILEYSGKQLALMELSSMVKLALFLTILANVFLPWGIATSLAPAG 258 Query 256 LDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTA 308 L + G+VA+ K+ I+A +A E +AKLRLFR+P LL SF LALLAV + Sbjct 259 LAI--GLVALLVKILIMAGAIAYIESCMAKLRLFRLPNLLTVSFTLALLAVMS 309 >gi|344943802|ref|ZP_08783088.1| hydrogenase subunit [Methylobacter tundripaludum SV96] gi|344259460|gb|EGW19733.1| hydrogenase subunit [Methylobacter tundripaludum SV96] Length=319 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/284 (47%), Positives = 188/284 (67%), Gaps = 4/284 (1%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 APL+ G + + R + R +LQP+RDLLK KQ + + +F AP I+ T+ Sbjct 22 APLLAGWVKCCKCRLQNRKAPSVLQPYRDLLKLTYKQPVVSEQASWLFTKAPYIIFSATV 81 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 L A + PL+A P SAD+ +VG L LAG+D GT+FGGMG+SRE+TI++L Sbjct 82 LAATVVPLIAVDLPTSASADVIVMVGFFAFARFFLALAGLDVGTAFGGMGSSREMTISSL 141 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPV 196 EP +L+A+F L++ A + NL +A ++ G V+ + V A ALV+V VAETGR+PV Sbjct 142 AEPAMLMAIFTLTMTASTTNLSLAIAHVLNE-GLVLRPSFVFALAALVLVAVAETGRIPV 200 Query 197 DNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTAL 256 DNPATHLELTM+HEAM+LEY+G LAL+EWA+ ++L + L+AN+F PWGIA ++ Sbjct 201 DNPATHLELTMIHEAMILEYSGRHLALIEWASQLKLMLYGVLIANIFFPWGIAET--LSI 258 Query 257 DVL-TGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSF 299 L G++A+ K+A+LAV+LA E +AK+RLFRV E L+ ++ Sbjct 259 QALGYGLLAIMGKLAVLAVVLAIAETLVAKMRLFRVQEYLSFAY 302 >gi|344341649|ref|ZP_08772566.1| hydrogenase subunit [Thiocapsa marina 5811] gi|343798403|gb|EGV16360.1| hydrogenase subunit [Thiocapsa marina 5811] Length=321 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/271 (50%), Positives = 178/271 (66%), Gaps = 2/271 (0%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+VRAR + R GA + QP+R+L K L K+ + +F AAP +V T L AA Sbjct 29 GWVRKVRARLQNRRGASVFQPYRELRKLLLKEARVAHTASPLFRAAPYVVFVATWLAAAT 88 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 PL+ P AD+ + GLL L V L LAG+D GT+FGGMGASRE+ I+AL EP + Sbjct 89 VPLLTIDLPTAVVADIIVLAGLLALARVFLALAGMDVGTAFGGMGASREMMISALAEPAM 148 Query 142 LLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPAT 201 L+AVF L++ A S NLG+++A + V+ + + AF L +V +AETGR+PVDNP T Sbjct 149 LMAVFTLAMTAHSTNLGSVIAHHLGD-AFVLRPSYLFAFAGLTLVALAETGRIPVDNPTT 207 Query 202 HLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLTG 261 HLELTMVHEAMVLEY+G LAL+EWAA ++L + L+AN+F PWG+A + P + G Sbjct 208 HLELTMVHEAMVLEYSGRHLALMEWAAQIKLLLYGVLVANIFFPWGVA-SDPAPASLAMG 266 Query 262 VVAVAAKVAILAVLLATFEVFLAKLRLFRVP 292 + AV K+A+L LA E LAK+RLFRVP Sbjct 267 LAAVVLKLAVLGGALAAAETVLAKMRLFRVP 297 >gi|337266649|ref|YP_004610704.1| putative hydrogenase protein [Mesorhizobium opportunistum WSM2075] gi|336026959|gb|AEH86610.1| putative hydrogenase protein [Mesorhizobium opportunistum WSM2075] Length=316 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/275 (47%), Positives = 181/275 (66%), Gaps = 5/275 (1%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+V+AR R G L+QP+RDLL+ + K+ + + +F P ++ T + AA+ Sbjct 24 GFVRKVKARLLRRQGPSLVQPYRDLLRLMRKEVVLADNASWLFRVTPYLIFAATWVAAAL 83 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P ATG +ADL A+V LL L LAG+D GTSFGG+G+SRE+ IA+L EP + Sbjct 84 IPTFATGLTFSWAADLIAIVALLGSARFFLALAGMDVGTSFGGIGSSREVMIASLAEPAM 143 Query 142 LLAVFALSIPAGSANLGALVASTIDHP--GHVVSLAGVLAFVALVIVIVAETGRLPVDNP 199 LL VF+L++ AG+ L VA+ + P G VSL ++ +ALV+V VAE R+PVDNP Sbjct 144 LLIVFSLALVAGATQLST-VAAFMGSPQVGLRVSLG--MSLIALVMVAVAENARIPVDNP 200 Query 200 ATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVL 259 ATHLELTMVHEAMVLEY+G LA++E+AA ++L + ++L++ +FLPWG A + Sbjct 201 ATHLELTMVHEAMVLEYSGRHLAMIEFAAFLKLLLYMSLISCVFLPWGAATTGAGLQSLA 260 Query 260 TGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 GVVA K+A+ VLLA FE +AK+R+FRVP+ Sbjct 261 AGVVAYIGKLAVCGVLLAVFETAIAKMRVFRVPDF 295 >gi|182414277|ref|YP_001819343.1| hydrogenase, membrane subunit 3-like protein (EchB-like) [Opitutus terrae PB90-1] gi|177841491|gb|ACB75743.1| hydrogenase, membrane subunit 3-like protein (EchB-like) [Opitutus terrae PB90-1] Length=314 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 137/297 (47%), Positives = 199/297 (68%), Gaps = 3/297 (1%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 APLV G+ + +A+ + R G + QP+ DLLK L K + + +F PV++ T L Sbjct 19 APLVSGVIKNWKAKLQNRRGPRVWQPYLDLLKFLRKDMVVSEHVSWIFGVTPVVLLLTAL 78 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 + P++ +P+D D A+VGLL LG L L+G+D ++FGGMG+SRE+TI+A+ Sbjct 79 AAGLLVPMITVQAPMDLFGDALALVGLLALGRFCLALSGLDPASTFGGMGSSREMTISAV 138 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPV 196 EP ++LA+FA+++ AGS NL +V ++ + + A LAF A+ +V++AETGR+PV Sbjct 139 AEPAMMLAIFAVALTAGSTNLSHIVQASEGFGWNFLDPAHALAFAAMFVVLLAETGRIPV 198 Query 197 DNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAA-PTA 255 DNPATHLELTM+HEAM+LEY+G LAL+EWA ++ VL+ALLAN+F P G+AG A P A Sbjct 199 DNPATHLELTMIHEAMLLEYSGRHLALIEWAVSVKQLVLMALLANIFFPLGLAGEATPAA 258 Query 256 LDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTAANFF 312 L + G AV K+ +LA + E AKLRLFRVP+LL+ +F+LA LA+ ++ F Sbjct 259 LALGLGFFAV--KLLLLAGAIVLVEFTNAKLRLFRVPDLLSTAFILATLALVSSFLF 313 >gi|296446949|ref|ZP_06888884.1| NADH dehydrogenase [Methylosinus trichosporium OB3b] gi|296255516|gb|EFH02608.1| NADH dehydrogenase [Methylosinus trichosporium OB3b] Length=317 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 131/286 (46%), Positives = 176/286 (62%), Gaps = 2/286 (0%) Query 9 QIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAP 68 Q+ V+ +PL+IG TR+V+AR R G LLQP+RDL++ + K+ I + +F AAP Sbjct 13 QMAFVLALSPLLIGFTRKVKARLLRRQGPPLLQPYRDLVRLMRKEVILAENASWLFRAAP 72 Query 69 VIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGAS 128 ++ TT + A+ P ATG +ADL + LL + L LAG+D GTSFGG+G+S Sbjct 73 YLIFATTWVATALTPTFATGLAFSWAADLIVITALLGSARLFLALAGMDVGTSFGGIGSS 132 Query 129 REITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIV 188 REI A+ EP +L+ VF +S+ AGS L + + VS A A VAL IV + Sbjct 133 REIMFASFAEPAMLMIVFIVSLIAGSTELSVVANHMLSSSELPVSFA--FALVALGIVAI 190 Query 189 AETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGI 248 AE GR+PVDNPATHLELTMVHEAMVLEY+G LA+VE AA M+L + ++L +F PWG+ Sbjct 191 AENGRVPVDNPATHLELTMVHEAMVLEYSGRHLAVVELAAAMKLLLYVSLTICIFFPWGL 250 Query 249 AGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 A + + KVA+ LLA FEV AK+R+FRVP Sbjct 251 APYEAGVGAMAASALGYVGKVAVAGFLLALFEVSTAKMRVFRVPNF 296 >gi|182679426|ref|YP_001833572.1| NADH dehydrogenase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635309|gb|ACB96083.1| NADH dehydrogenase [Beijerinckia indica subsp. indica ATCC 9039] Length=318 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 135/286 (48%), Positives = 183/286 (64%), Gaps = 9/286 (3%) Query 13 VMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVA 72 V+ AP + G R+V+AR R G +LQP+RDL + + K+ + + +F A P ++ Sbjct 17 VLCLAPALTGFVRKVKARLLRRRGPSILQPYRDLWRLMRKEVVLAENASWLFRAIPYLIF 76 Query 73 GTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREIT 132 T + AA+ P ATG SADL AV LL L LAG+D GTSFGG+G+SRE+ Sbjct 77 SATWVAAALVPTFATGLLFSWSADLIAVTALLGSTRFFLALAGMDVGTSFGGIGSSREVM 136 Query 133 IAALVEPTILLAVFALSIPAGSANLGALVASTIDHP-GHVVSLAGVLAFVALVIVIVAET 191 IA L EP +++ VF L++ AGS L +L + P G VSL LA +ALV+V VAE Sbjct 137 IATLAEPAMIMIVFTLALLAGSTQLSSLAGFMLTSPVGLRVSLG--LALIALVMVAVAEN 194 Query 192 GRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGA 251 GR+P+DNPATHLELTMVHEAM+LEY+G LAL+E AA ++L + ++L+ +FLPWG+ Sbjct 195 GRIPIDNPATHLELTMVHEAMLLEYSGRHLALIELAASLKLLLYVSLIGCVFLPWGL--- 251 Query 252 APTALDVLTGVVAVAA---KVAILAVLLATFEVFLAKLRLFRVPEL 294 +P DV T +V V A K+A LLA FE +AK+R+FRVPE Sbjct 252 SPPGADVSTRLVGVGAYGLKLAAGGFLLAFFETTVAKMRVFRVPEF 297 >gi|260575427|ref|ZP_05843426.1| NADH dehydrogenase [Rhodobacter sp. SW2] gi|259022347|gb|EEW25644.1| NADH dehydrogenase [Rhodobacter sp. SW2] Length=320 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/280 (47%), Positives = 183/280 (66%), Gaps = 11/280 (3%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G+ R+V+AR R GA L+QP+RDLL+ + KQ + + +F AP ++ T + AA+ Sbjct 26 GLVRKVKARLMRRRGASLIQPYRDLLRLMRKQVVLADNASWLFRVAPYLIFAATWVAAAL 85 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P ATG +ADL A+V LL L LAG+D GTSFGG+G+SRE+ I++L EP + Sbjct 86 VPTFATGLHFSWTADLIAIVALLGSARFFLALAGMDVGTSFGGIGSSREMMISSLAEPAM 145 Query 142 LLAVFALSIPAGSANLGALVASTIDHP--GHVVSLAGVLAFVALVIVIVAETGRLPVDNP 199 +L VF+L++ AGS L VA + P G VSL +A VALVIV +AE R+PVDNP Sbjct 146 MLTVFSLALVAGSTQLST-VAEYMASPAVGLRVSLG--MALVALVIVALAENARIPVDNP 202 Query 200 ATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGI----AGAAPTA 255 +THLELTMVHEAMVLEY+G LA++E AA ++L + ++L+ +FLPWG+ +GA +A Sbjct 203 STHLELTMVHEAMVLEYSGRHLAMIEIAAALKLLLYISLIGCIFLPWGLVNSDSGAGLSA 262 Query 256 LDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELL 295 L + K+A+ V+LA FE +AK+R+FRVP + Sbjct 263 --YLVAMALYGGKLALGGVVLAIFETSIAKMRVFRVPNFI 300 >gi|114775568|ref|ZP_01451136.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] gi|114553679|gb|EAU56060.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] Length=315 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 133/304 (44%), Positives = 193/304 (64%), Gaps = 2/304 (0%) Query 13 VMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVA 72 ++V APL G +AR + R G G++QPWR+L K + K+ + + +F AP +V Sbjct 14 LIVLAPLAAGFVATCKARLQNRRGGGVMQPWRNLRKLIAKEVVMAEHASWIFRFAPYVVF 73 Query 73 GTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREIT 132 T++ A+ P V +PL +AD+ A+V LL L L LAG+D GT+FGGMGASRE+T Sbjct 74 TATVMAASCVPAVLVNTPLSLTADVIALVALLALARFFLALAGMDIGTAFGGMGASREMT 133 Query 133 IAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETG 192 +AL EP +L++VF LS+ A S NL ++ ++ P V+ + A A+V++ +AE G Sbjct 134 FSALAEPAMLMSVFVLSLSAHSTNLTTMINHALNAPL-VLQPSLAFALAAMVMIAIAENG 192 Query 193 RLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAA 252 R+P+DNP THLELTM+HEAM+LEY+G LAL+EWAA ++L + LL +LFLPWG+A A Sbjct 193 RIPIDNPTTHLELTMIHEAMILEYSGRHLALMEWAAMIKLLLFATLLIDLFLPWGMATDA 252 Query 253 PTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVTAANFF 312 L + + AK+ L ++LA E LAK+RLF PE L+G+F++A L + Sbjct 253 -GILALTLALALWVAKLFGLLLMLALAETGLAKMRLFEAPEYLSGAFVIAFLGLLTHYML 311 Query 313 TVGA 316 VGA Sbjct 312 EVGA 315 >gi|83309309|ref|YP_419573.1| formate hydrogenlyase subunit 4 [Magnetospirillum magneticum AMB-1] gi|82944150|dbj|BAE49014.1| Formate hydrogenlyase subunit 4 [Magnetospirillum magneticum AMB-1] Length=315 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 131/287 (46%), Positives = 178/287 (63%), Gaps = 3/287 (1%) Query 9 QIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAP 68 QI V+ +PL+ G R V++R GR GA QP+RD+ + L K+ + + VF AP Sbjct 10 QIVLVVAISPLITGWVRLVKSRLNGRIGASPFQPYRDIYRLLQKEAVVAHSASWVFRVAP 69 Query 69 VIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGAS 128 + G L A I P T L +ADL A+V LL + LAG+D GTSFGG+GAS Sbjct 70 YVTFGAAWLAACIVPAFTTNLFLAQAADLIALVALLGVARFWTALAGMDVGTSFGGLGAS 129 Query 129 REITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHP-GHVVSLAGVLAFVALVIVI 187 RE+ I++L EP +L+ F+LS+ +G+ ++A + G VSL LA ALV+V Sbjct 130 REMMISSLAEPAMLMVTFSLSLISGTTAPAQIIAFVLSGGVGIEVSLG--LALAALVMVA 187 Query 188 VAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWG 247 +AE GR+P+DNPATHLELTMVHEAMVLEY+G LAL+E A +RLT+ +AL+ LF PWG Sbjct 188 IAENGRIPIDNPATHLELTMVHEAMVLEYSGRHLALMEGAGMVRLTLFMALIGGLFAPWG 247 Query 248 IAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 +A A+ VL G+ A AK +LA L FE +AK+R+FR + Sbjct 248 MAQPGGDAVAVLVGLAAFLAKCFVLATALGVFETSIAKMRVFRYADF 294 >gi|115522978|ref|YP_779889.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodopseudomonas palustris BisA53] gi|115516925|gb|ABJ04909.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris BisA53] Length=319 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/284 (46%), Positives = 177/284 (63%), Gaps = 5/284 (1%) Query 13 VMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVA 72 V + APL+ G R+V+AR R G LLQP+RDLL+ L K+ + + +F P + Sbjct 18 VFMLAPLLTGFVRKVKARLTRRQGPSLLQPYRDLLRLLRKEAVLADNASWLFRTTPYLTF 77 Query 73 GTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREIT 132 + AA+ P ATG + +ADL +V LL L LAG+D GT+FGG+G+SRE+ Sbjct 78 AAIWVAAALVPTFATGLLFNWTADLIVIVALLGTARFFLALAGMDIGTAFGGIGSSREVM 137 Query 133 IAALVEPTILLAVFALSIPAGSANLGALVASTI--DHPGHVVSLAGVLAFVALVIVIVAE 190 IAAL EP +LL VF +++ AGS L VA+ I G VSL LA +ALV+V +AE Sbjct 138 IAALAEPAMLLIVFGVALVAGSTQLST-VANFIASSQVGLRVSLG--LAMIALVMVALAE 194 Query 191 TGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAG 250 R+PVDNP+THLELTMVHEAM+LEY+G LA++E+ A ++L + ++L+ LF PWGIA Sbjct 195 NARIPVDNPSTHLELTMVHEAMILEYSGRHLAMIEFGAFLKLLLYVSLIGCLFFPWGIAI 254 Query 251 AAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 A L + G KV + LLA FE AK+R+FRVP+ Sbjct 255 AGDAPLSYVVGAGLYLLKVTVAGFLLALFETATAKMRVFRVPQF 298 >gi|344345383|ref|ZP_08776235.1| hydrogenase subunit [Marichromatium purpuratum 984] gi|343803003|gb|EGV20917.1| hydrogenase subunit [Marichromatium purpuratum 984] Length=321 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/271 (49%), Positives = 178/271 (66%), Gaps = 4/271 (1%) Query 21 IGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAA 80 IG R+V+AR R GA +LQP+RDL K L K+ + +F AP +V T L AA Sbjct 28 IGWVRKVKARLHNRRGASVLQPYRDLRKLLAKETRVAHTASPLFRLAPYVVFVATWLAAA 87 Query 81 IAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPT 140 PLVA P AD+ +VGLL L L LAG+D GT+FGGMGASRE+ +++L EP Sbjct 88 TVPLVARDLPTAQIADIIVLVGLLGLARFFLALAGMDVGTAFGGMGASREMMVSSLAEPA 147 Query 141 ILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPA 200 +L+AVF L++ A S +L +++ + G VV + + AF ALV+V +AE+GR+PVDNP Sbjct 148 MLVAVFTLAMSAHSTSLSSVIGYHLTE-GFVVRPSYLFAFGALVLVALAESGRIPVDNPT 206 Query 201 THLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGA-APTALDVL 259 THLELTM+HE M+LEY G LAL+E AA ++L + L+AN+F+PWGI A AP AL + Sbjct 207 THLELTMIHEGMLLEYTGRHLALMELAAHLKLMLYGVLIANVFVPWGIGQAFAPVAL--V 264 Query 260 TGVVAVAAKVAILAVLLATFEVFLAKLRLFR 290 G+ A+ K+A+L LA E +AK+RLFR Sbjct 265 LGLGAILLKLAVLGAALAIGETVVAKMRLFR 295 >gi|91978317|ref|YP_570976.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodopseudomonas palustris BisB5] gi|91684773|gb|ABE41075.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris BisB5] Length=316 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/278 (47%), Positives = 176/278 (64%), Gaps = 11/278 (3%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+V+AR + R GA +LQP+RDL++ L K + + +F A P + + AA+ Sbjct 24 GFIRKVKARLQRRRGASMLQPYRDLIRLLRKDVVLADNASWLFRATPYVTFAAIWVAAAL 83 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P ATG + +ADL VV LL L LAG+D GTSFGG+G+SRE+ IAAL EP + Sbjct 84 VPTFATGLMFNWTADLIVVVALLGTARFFLALAGMDIGTSFGGIGSSREVMIAALAEPAM 143 Query 142 LLAVFALSIPAGSANLGAL---VASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDN 198 L+ VF +++ AGS +L + +AST G VSL LA +ALV+V +AE R+PVDN Sbjct 144 LMIVFCVALVAGSTHLSTVANYIAST--EVGLRVSLG--LAMIALVMVALAENARIPVDN 199 Query 199 PATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIA--GAAPTAL 256 P+THLELTMVHEAM+LEY+G LA++E+ A ++L + ++L+ LF PWGI GA P A Sbjct 200 PSTHLELTMVHEAMILEYSGRHLAMIEFGAQLKLLLYVSLIVCLFYPWGIGIFGAGPLA- 258 Query 257 DVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 L G K+ + LLA FE AK+R+FRVP+ Sbjct 259 -YLAGAALYMGKLTVAGFLLAVFETATAKMRVFRVPQF 295 >gi|312113078|ref|YP_004010674.1| NADH dehydrogenase [Rhodomicrobium vannielii ATCC 17100] gi|311218207|gb|ADP69575.1| NADH dehydrogenase [Rhodomicrobium vannielii ATCC 17100] Length=321 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/306 (46%), Positives = 196/306 (65%), Gaps = 3/306 (0%) Query 2 SYLAGAAQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTT 61 S++A AQ+ V+ AP V G+TR+V+AR R G L QP+RDLLK + K+ + T Sbjct 7 SFVAQGAQMFFVLAIAPAVTGITRKVKARLMRRRGPSLFQPYRDLLKLVRKESVLAPNAT 66 Query 62 IVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTS 121 F +AP ++ T + AA+ P +A+G + +AD+ A+V L+ L LA +D GT+ Sbjct 67 WFFRSAPYMIFAFTWVAAALVPTLASGLMFNWAADVVALVALIGAARALLALAAMDAGTA 126 Query 122 FGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHV-VSLAGVLAF 180 FGG+G+SRE+ IA+L EP LL ++ AG+ L + I P + VS A LAF Sbjct 127 FGGIGSSREMMIASLAEPASLLVALTIAFAAGTTRLPEVAQFLITQPLEIRVSFA--LAF 184 Query 181 VALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLA 240 VALVIV +AE R+PVDNPATHLELTMVHEAMVLEY+G LA++E A ++LT+ ++L+ Sbjct 185 VALVIVAMAENARIPVDNPATHLELTMVHEAMVLEYSGRHLAMIEAAGHLKLTLYISLII 244 Query 241 NLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFL 300 LFLP+G+A +A G+ + AK+ + AV L +EV +AK+R+FRV E L G+F Sbjct 245 CLFLPFGMAPFDGSAGAWAIGIGSYLAKLMLAAVALGVWEVSIAKMRVFRVSEFLGGAFT 304 Query 301 LALLAV 306 A LA+ Sbjct 305 FAFLAI 310 >gi|56477809|ref|YP_159398.1| formate hydrogenlyase membrane subunit HyfD [Aromatoleum aromaticum EbN1] gi|56313852|emb|CAI08497.1| Formate hydrogenlyase membrane subunit subunit HyfD [Aromatoleum aromaticum EbN1] Length=315 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/285 (45%), Positives = 177/285 (63%), Gaps = 2/285 (0%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G Q RA + R LLQP+R L K K+ + + +F AP ++ G L I Sbjct 25 GWINQWRAWLQNRRAPSLLQPYRVLHKLFNKESVVAETASPLFRVAPYVMFGCMALACGI 84 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 AP ++T PL P+AD A+VGL L V ++LA +D GTSFG +GA RE+ + L EP + Sbjct 85 APTLSTDLPLAPAADAIALVGLFALARVFISLAAMDIGTSFGTLGARREMLVGFLAEPAL 144 Query 142 LLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPAT 201 L+ +F+ S+ S +L +V T+ H + + +A VA +V +AE R+PVDNPAT Sbjct 145 LMVLFSASLITQSTSLAKIV-ETLAHEPFAIYPSLAVAGVAFTMVSLAENARVPVDNPAT 203 Query 202 HLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLTG 261 HLELTM+HEA++LEY+G LALVEWAA ++L + LF+PWGIA A T L +L Sbjct 204 HLELTMIHEALILEYSGRHLALVEWAASLKLFAYSCIGLALFVPWGIAEAG-TPLTILFA 262 Query 262 VVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAV 306 + + AK+AI VLLA E AK+RLFRVPE LA +FLLA++A+ Sbjct 263 IPVLVAKLAIGGVLLALIETINAKMRLFRVPEFLATAFLLAVIAL 307 >gi|198283915|ref|YP_002220236.1| formate hydrogenlyase membrane subunit HyfD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665331|ref|YP_002426549.1| hydrogenase-4, C subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248436|gb|ACH84029.1| formate hydrogenlyase membrane subunit subunit HyfD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517544|gb|ACK78130.1| hydrogenase-4, C subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length=313 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/309 (46%), Positives = 190/309 (62%), Gaps = 4/309 (1%) Query 8 AQIGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAA 67 AQ+ V APL GM R +RA + R AG Q +RDL + K+ + GT+ +F A Sbjct 9 AQVLLVAFLAPLFAGMLRALRAILQNRRPAGCWQNYRDLYRLFHKESLQAEGTSWLFRFA 68 Query 68 PVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGA 127 P + G L AAI P++ATG PL P+AD+ A+VGL L V LA +DTGT F +GA Sbjct 69 PYGIFGAFCLAAAIIPILATGLPLAPAADVIALVGLFALARVFQVLAAMDTGTPFATLGA 128 Query 128 SREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVI 187 RE+ IA L EP +L +F S+ + S +L +VA ++ + + A A IV+ Sbjct 129 HREMLIAGLAEPALLATLFTASLLSRSTSLSVIVAH-LEQLRFALHPSMAFAATAFFIVL 187 Query 188 VAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWG 247 +AE R+PVDNPATHLELTM+HEAM+LEY+G LAL+EW A ++LT+ +A+ LFLPWG Sbjct 188 LAENARIPVDNPATHLELTMIHEAMLLEYSGRHLALMEWGAQIKLTLYVAIGIALFLPWG 247 Query 248 IAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALLAVT 307 I A A+ +T V + K A AV+LA E LAKLRLFR PE +A +FLL ++ + Sbjct 248 IVPTAEVAMLPMTLPV-LLLKFASAAVILALIETLLAKLRLFRAPEFMATAFLLGVIGLL 306 Query 308 AANFFTVGA 316 FF +GA Sbjct 307 --TFFMLGA 313 >gi|90422449|ref|YP_530819.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodopseudomonas palustris BisB18] gi|90104463|gb|ABD86500.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris BisB18] Length=316 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 128/277 (47%), Positives = 173/277 (63%), Gaps = 9/277 (3%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+V+AR R GA + QP+RDLL+ L K+ + + +F A P + + AA+ Sbjct 24 GFIRKVKARLMRRKGASIFQPYRDLLRLLRKEVVLADNASWLFRATPYLTFAAIWVAAAL 83 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P ATG + +ADL +V LL L LAG+D GT+FGG+G+SRE+ IAAL EP + Sbjct 84 VPTFATGLLFNWTADLIVIVALLGTARFFLALAGMDVGTAFGGLGSSREVMIAALAEPAM 143 Query 142 LLAVFALSIPAGSANLGALVASTI--DHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNP 199 LL VF +++ AGS L VA+ I G VSL +A +ALVIV +AE R+PVDNP Sbjct 144 LLIVFCVALVAGSTQLST-VANFIASSQVGLRVSLG--MAMIALVIVALAENARIPVDNP 200 Query 200 ATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIA--GAAPTALD 257 +THLELTMVHEAM+LEY+G LAL+E+ A ++L + ++L+ LF PW IA GA P L Sbjct 201 STHLELTMVHEAMILEYSGRHLALIEFGAFLKLLLYISLIGCLFFPWEIAVFGAGP--LS 258 Query 258 VLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 + G KV + LLA FE AK+R+FRVP+ Sbjct 259 YVIGAGMYLLKVTVAGFLLAVFETATAKMRVFRVPQF 295 >gi|325288315|ref|YP_004264496.1| respiratory-chain NADH dehydrogenase subunit 1 [Syntrophobotulus glycolicus DSM 8271] gi|324963716|gb|ADY54495.1| respiratory-chain NADH dehydrogenase subunit 1 [Syntrophobotulus glycolicus DSM 8271] Length=314 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/272 (40%), Positives = 170/272 (63%), Gaps = 1/272 (0%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G+ ++++A ++ R G + QP+ DL K L K+ + T+ +F A P + G L+IA + Sbjct 23 GIIKKIKAFFQNRRGPRICQPYYDLYKYLQKETVVSEHTSWIFTATPYLYFGAMLVIAML 82 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P V PL D+ +V LL L L LAG+D G++FGGM +SRE+ ++++VEP + Sbjct 83 VPAVTVAGPLAFGGDIILIVYLLALARFFLALAGLDAGSAFGGMASSREMALSSVVEPAM 142 Query 142 LLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPAT 201 +L +F +S+ AG+ NL +V V + + ++F+AL +V +AETGR+PVDNP T Sbjct 143 MLPLFTVSLAAGTTNLSQIVTEVAKTGPAVFTPSHFISFLALFVVAIAETGRIPVDNPDT 202 Query 202 HLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLTG 261 HLELTM+HE M+LEY+G LAL+ A ++ ++ LAN+F PWGIA + A V G Sbjct 203 HLELTMIHEGMLLEYSGKPLALLTLGAYLKQVLIFTFLANIFFPWGIAFSL-NAASVFGG 261 Query 262 VVAVAAKVAILAVLLATFEVFLAKLRLFRVPE 293 ++ K+ L +++A E ++K+RLF+VPE Sbjct 262 ILFFLGKLVFLGIVMAVIETSMSKMRLFKVPE 293 >gi|89902060|ref|YP_524531.1| respiratory-chain NADH dehydrogenase subunit 1 [Rhodoferax ferrireducens T118] gi|89346797|gb|ABD71000.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodoferax ferrireducens T118] Length=316 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/307 (42%), Positives = 189/307 (62%), Gaps = 5/307 (1%) Query 1 MSYLAGAAQIGGV---MVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITP 57 MS+L +Q+ + +V APL+ G Q RAR + ++ LLQP+R L K K+ + Sbjct 1 MSWLGLLSQLMAIVMALVLAPLLTGWVNQWRARLQNKSAPNLLQPYRVLHKLFNKESVLA 60 Query 58 AGTTIVFAAAPVIVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGID 117 + +F AP IV G LL +AI P ++T PL P+AD A+VGL L V ++LA +D Sbjct 61 EHASPLFRMAPYIVFGCMLLASAIIPTLSTDLPLSPAADAIALVGLFALARVFISLAAMD 120 Query 118 TGTSFGGMGASREITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGV 177 GT+FG +GA RE+ + L EP +L+ +F S+ + S +L +V T+ H + + + Sbjct 121 VGTAFGSLGARREMLVGFLAEPALLMVLFCASMISRSTSLTTIV-ETLAHRELAIYPSLL 179 Query 178 LAFVALVIVIVAETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLA 237 +A VA +V +AE R+PVDNP THLELTM+HE+M+LEY+G LAL+EWAA ++L Sbjct 180 VAGVAFTMVSLAENARVPVDNPDTHLELTMIHESMILEYSGRHLALLEWAASLKLFAYSC 239 Query 238 LLANLFLPWGIAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAG 297 + LF PWG+A A L +L + + K+A+ VL+A E AK+R+FRVPE L Sbjct 240 IGLALFFPWGVA-EAHAPLALLLALPVLVIKLALGGVLMALIETLSAKMRIFRVPEFLGT 298 Query 298 SFLLALL 304 +FLLA++ Sbjct 299 AFLLAVI 305 >gi|27381451|ref|NP_772980.1| hydrogenlyase component [Bradyrhizobium japonicum USDA 110] gi|27354619|dbj|BAC51605.1| hycC [Bradyrhizobium japonicum USDA 110] Length=318 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/278 (45%), Positives = 175/278 (63%), Gaps = 11/278 (3%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+++AR R GA + QP+ DLL+ L K+ + + +F P + + AA+ Sbjct 26 GFVRKIKARLVRRQGASVFQPYLDLLRLLRKEVVLADNASWLFRVTPYVTFAAIWVAAAL 85 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P ATG + +ADL A+V LL L LAG+D GTSFGG+G+SRE+ IAAL EP + Sbjct 86 VPTFATGLLFNWTADLIAIVALLGSARFFLALAGMDVGTSFGGIGSSREVMIAALAEPAM 145 Query 142 LLAVFALSIPAGSANLGA---LVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDN 198 LL VF ++ AGS L +AS+ + G VSL +A +AL++V +AE R+PVDN Sbjct 146 LLFVFCTALIAGSTQLSTVANFMASS--YVGLRVSLG--MAMIALIMVALAENARIPVDN 201 Query 199 PATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIA--GAAPTAL 256 PATHLELTMVHEAMVLEY+G LA++E+ A ++L + ++L+A +FLPW IA G P + Sbjct 202 PATHLELTMVHEAMVLEYSGRHLAMIEFGAFLKLLLYVSLIACVFLPWKIAVFGTGPFSY 261 Query 257 DVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 + G VA K+A+ LA FE AK+R+FRVP+ Sbjct 262 AI--GAVAYLVKLAVAGFFLALFETATAKMRVFRVPQF 297 >gi|86748386|ref|YP_484882.1| respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris HaA2] gi|86571414|gb|ABD05971.1| Respiratory-chain NADH dehydrogenase, subunit 1 [Rhodopseudomonas palustris HaA2] Length=316 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 122/276 (45%), Positives = 172/276 (63%), Gaps = 7/276 (2%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+V+AR + R G LLQP+RDL++ L K+ + + +F A P + + AA+ Sbjct 24 GFIRKVKARLQRRRGPSLLQPYRDLIRLLRKEVVLADNASWLFRATPYVTFAAIWVAAAL 83 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P ATG + +ADL +V LL L LAG+D GTSFGG+G+SRE+ IAAL EP + Sbjct 84 VPTFATGLLFNWTADLIVIVALLGTARFFLALAGMDVGTSFGGIGSSREVMIAALAEPAM 143 Query 142 LLAVFALSIPAGSANLGAL---VASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDN 198 L+ VF +++ AG+ +L + +AST G VSL LA +ALV+V +AE R+P+DN Sbjct 144 LMIVFCVALVAGTTHLSTVANYIAST--AVGLRVSLG--LAMIALVMVALAENARIPIDN 199 Query 199 PATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDV 258 P+THLELTMVHEAM+LEY+G LA++E+ A ++L + ++L+ LF PWGI Sbjct 200 PSTHLELTMVHEAMILEYSGRHLAMIEYGAQLKLLLYVSLIVCLFYPWGIGVFGAGPAAY 259 Query 259 LTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPEL 294 L G K+ I LLA FE AK+R+FRVP+ Sbjct 260 LAGAALYLFKITIAGFLLAVFETATAKMRVFRVPQF 295 >gi|343917163|gb|EGV27972.1| hydrogenase subunit [Thiorhodococcus drewsii AZ1] Length=315 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/272 (48%), Positives = 180/272 (67%), Gaps = 2/272 (0%) Query 21 IGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAA 80 +G R+V+AR + R GA + QP+ DL K L K+ + +F AP IV T L AA Sbjct 22 VGWVRKVKARLQNRRGASVFQPYADLRKLLIKETRVAHTASELFRVAPYIVFVATWLAAA 81 Query 81 IAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPT 140 PLVA P+ AD+ +VGLL L L LAG+D GT+FGGMGASRE+ ++AL EP Sbjct 82 TVPLVALDLPIAAVADIIVLVGLLALARFFLALAGMDAGTAFGGMGASREMLVSALAEPA 141 Query 141 ILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPA 200 +L+AVF L++ A S +L +++A + G ++ + + AF ALV+V +AE GR+PVDNP+ Sbjct 142 MLMAVFTLAMTAHSTSLQSVMAHHLA-DGFLLRPSYLFAFGALVLVALAECGRIPVDNPS 200 Query 201 THLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDVLT 260 THLELTM+HEAM+LEY+G LAL+EWAA ++L + L+ N+F PWG+ GA L + + Sbjct 201 THLELTMIHEAMLLEYSGRHLALMEWAAQIKLLLYGVLIVNVFFPWGV-GANFGVLALGS 259 Query 261 GVVAVAAKVAILAVLLATFEVFLAKLRLFRVP 292 G+ V K+ +L LLA E LAK+RLFRVP Sbjct 260 GLAVVLLKLLVLGALLAAGETVLAKMRLFRVP 291 >gi|91786819|ref|YP_547771.1| respiratory-chain NADH dehydrogenase subunit 1 [Polaromonas sp. JS666] gi|91696044|gb|ABE42873.1| respiratory-chain NADH dehydrogenase, subunit 1 [Polaromonas sp. JS666] Length=315 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 125/289 (44%), Positives = 177/289 (62%), Gaps = 4/289 (1%) Query 17 APLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTL 76 APL+ G Q RA + ++ L QP+R L K K+ + + +F AP +V G + Sbjct 20 APLLTGWVNQWRAWLQNKSAPSLWQPYRMLHKLFNKESMVADSASRLFRIAPYVVFGCMV 79 Query 77 LIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAAL 136 L +I P V+T PL +AD A+VGL L V ++LA +D GT+FG MGA RE+ I L Sbjct 80 LACSIIPTVSTDLPLATAADAIALVGLFALARVFISLAAMDIGTAFGTMGARREMLIGFL 139 Query 137 VEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPV 196 EP +L+ +F+ S+ + S +L +V T+ H + A VA +V +AE R+PV Sbjct 140 AEPALLMVLFSASLISKSTSLTTIV-ETLAHRELAIYPGLAFAGVAFTMVSLAENARVPV 198 Query 197 DNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGA-APTA 255 DNPATHLELTM+HEA++LEY+G LAL+EWAA ++L + LF PWG+A A AP A Sbjct 199 DNPATHLELTMIHEALILEYSGRHLALIEWAASLKLFAYSCIGLALFFPWGVAEAQAPLA 258 Query 256 LDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALL 304 + L + + K+A+ LLA E F AK+R+FRVPE LA +FLLA++ Sbjct 259 M--LLALPVLVFKLAVGGFLLAALEAFSAKMRIFRVPEFLATAFLLAVI 305 >gi|148260399|ref|YP_001234526.1| formate hydrogenlyase subunit 4-like protein [Acidiphilium cryptum JF-5] gi|326403591|ref|YP_004283673.1| putative NADH dehydrogenase [Acidiphilium multivorum AIU301] gi|146402080|gb|ABQ30607.1| Formate hydrogenlyase subunit 4-like protein [Acidiphilium cryptum JF-5] gi|325050453|dbj|BAJ80791.1| putative NADH dehydrogenase [Acidiphilium multivorum AIU301] Length=318 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 124/277 (45%), Positives = 179/277 (65%), Gaps = 7/277 (2%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+V+AR + RAG LLQ +RDL + + K+ + P ++ +F +P ++ T + AA+ Sbjct 26 GFVRKVKARLQRRAGPPLLQVYRDLARLVAKEAVVPEASSWLFRVSPYVIFAATWVAAAL 85 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P AT S DL + LL LA +D+GT+FGG+GASRE +A+L EP + Sbjct 86 VPEFATNLQFSWSGDLIVIAALLGSARFFQMLAALDSGTAFGGIGASREAMLASLAEPAM 145 Query 142 LLAVFALSIPAGSANLGALVASTIDHPG-HVVSLAGVLAFVALVIVIVAETGRLPVDNPA 200 L+ VF +++ AG++ L A+ +T H G + L+ L VALV+V + ETGR PVDNPA Sbjct 146 LMIVFTVALVAGTSQLSAI--ATFMHSGAEGLRLSLALGLVALVMVGLTETGRFPVDNPA 203 Query 201 THLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIA--GAAPTALDV 258 THLELTMVHEAMVLEY+G LAL+E A MRL + ++L+A +F P+GIA GA P +L + Sbjct 204 THLELTMVHEAMVLEYSGRHLALIELAGAMRLLLYMSLIACIFAPFGIAPPGAGPASLAL 263 Query 259 LTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELL 295 G+++ A K+ AV LA FE +AK+R+FR+P + Sbjct 264 --GLLSYAGKLGAGAVALAGFETTIAKMRVFRIPNFV 298 >gi|299132785|ref|ZP_07025980.1| respiratory-chain NADH dehydrogenase, subunit 1 [Afipia sp. 1NLS2] gi|298592922|gb|EFI53122.1| respiratory-chain NADH dehydrogenase, subunit 1 [Afipia sp. 1NLS2] Length=317 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/278 (44%), Positives = 176/278 (64%), Gaps = 10/278 (3%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G+TR+++AR + R G +LQP+RDL + GK + ++ +F AP ++ T + AA+ Sbjct 26 GVTRKMKARLQRRIGPPILQPYRDLRRLFGKDVVLADNSSWLFRVAPYLIFAATWVAAAL 85 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P TG DL A+V LL +A +DTGTSFGG+GASRE+ IA+L EP + Sbjct 86 VPTFQTGLLFSWVGDLIAIVALLGTARFVQAVAALDTGTSFGGIGASREVMIASLAEPAM 145 Query 142 LLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDNPAT 201 ++ VF +++ AGS L + A D G VSLA +A VAL+IV +AE R+PVDNP+T Sbjct 146 IMVVFTVALVAGSTQLSTIAAFMADAGGLRVSLA--MALVALIIVALAENARIPVDNPST 203 Query 202 HLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGI----AGAAPTALD 257 HLE+TMVHEAM LEY+G LA++E AA ++L + ++++A +F P+G+ AG A+ Sbjct 204 HLEVTMVHEAMALEYSGRHLAMIELAASLKLLLYISIIACIFFPFGLITDGAGLPAHAIS 263 Query 258 VLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELL 295 + A KV + +LLAT E +AK+R+FRVP LL Sbjct 264 ----LAAYLLKVIVAGLLLATLETVIAKMRVFRVPNLL 297 >gi|339834212|gb|EGQ61992.1| hydrogenase-4, C subunit [Acidithiobacillus sp. GGI-221] Length=286 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/283 (47%), Positives = 176/283 (63%), Gaps = 2/283 (0%) Query 19 LVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLI 78 L GM R +RA + R AG Q +RDL + K+ + GT+ +F AP + G L Sbjct 1 LFAGMLRALRAILQNRRPAGCWQNYRDLYRLFHKESLQAEGTSWLFRFAPYGIFGAFCLA 60 Query 79 AAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVE 138 AAI P++ATG PL P+AD+ A+VGL L V LA +DTGT F +GA RE+ IA L E Sbjct 61 AAIIPILATGLPLAPAADVIALVGLFALARVFQVLAAMDTGTPFATLGAHREMLIAGLAE 120 Query 139 PTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAETGRLPVDN 198 P +L +F S+ + S +L +VA ++ + + A A IV++AE R+PVDN Sbjct 121 PALLATLFTASLLSRSTSLSVIVAH-LEQLRFALHPSMAFAATAFFIVLLAENARIPVDN 179 Query 199 PATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGAAPTALDV 258 PATHLELTM+HEAM+LEY+G LAL+EW A ++LT+ +A+ LFLPWGI A A+ Sbjct 180 PATHLELTMIHEAMLLEYSGRHLALMEWGAQIKLTLYVAIGIALFLPWGIVPTAEVAMLP 239 Query 259 LTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLL 301 +T V + K A AV+LA E LAKLRLFR PE +A +FLL Sbjct 240 MTLPV-LLLKFASAAVILALIETLLAKLRLFRAPEFMATAFLL 281 >gi|338980410|ref|ZP_08631686.1| Formate hydrogenlyase subunit 4-like protein [Acidiphilium sp. PM] gi|338208673|gb|EGO96516.1| Formate hydrogenlyase subunit 4-like protein [Acidiphilium sp. PM] Length=318 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/277 (45%), Positives = 178/277 (65%), Gaps = 7/277 (2%) Query 22 GMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLIAAI 81 G R+V+AR + RAG LLQ +RDL + + K+ + P ++ +F +P ++ T + AA+ Sbjct 26 GFVRKVKARLQRRAGPPLLQVYRDLARLVAKEAVVPEASSWLFRVSPYVIFAATWVAAAL 85 Query 82 APLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALVEPTI 141 P AT S DL + LL LA +D+GT+FGG+GASRE +A+L EP + Sbjct 86 VPEFATNLQFSWSGDLIVIAALLGSARFFQMLAALDSGTAFGGIGASREAMLASLAEPAM 145 Query 142 LLAVFALSIPAGSANLGALVASTIDHPG-HVVSLAGVLAFVALVIVIVAETGRLPVDNPA 200 L+ VF +++ AG++ L A+ +T H G + L+ L VALV+V + ETGR PV NPA Sbjct 146 LMIVFTVALVAGTSQLSAI--ATFMHSGAEGLRLSLALGLVALVMVGLTETGRFPVANPA 203 Query 201 THLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIA--GAAPTALDV 258 THLELTMVHEAMVLEY+G LAL+E A MRL + ++L+A +F P+GIA GA P +L + Sbjct 204 THLELTMVHEAMVLEYSGRHLALIELAGAMRLLLYMSLIACIFAPFGIAPPGAGPASLAL 263 Query 259 LTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELL 295 G+++ A K+ AV LA FE +AK+R+FR+P + Sbjct 264 --GLLSYAGKLGAGAVALAGFETTIAKMRVFRIPNFV 298 Lambda K H 0.325 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 549222890922 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40