BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0086
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607228|ref|NP_214600.1| hydrogenase HycQ [Mycobacterium tub... 920 0.0
gi|254366542|ref|ZP_04982586.1| hydrogenase hycQ [Mycobacterium ... 920 0.0
gi|31791264|ref|NP_853757.1| hydrogenase HycQ [Mycobacterium bov... 918 0.0
gi|308373882|ref|ZP_07433990.2| hydrogenase hycQ [Mycobacterium ... 914 0.0
gi|289748554|ref|ZP_06507932.1| LOW QUALITY PROTEIN: hydrogenase... 788 0.0
gi|340625121|ref|YP_004743573.1| putative hydrogenase HYCQ [Myco... 764 0.0
gi|118617495|ref|YP_905827.1| hydrogenase HycQ [Mycobacterium ul... 645 0.0
gi|183981672|ref|YP_001849963.1| hydrogenase HycQ [Mycobacterium... 644 0.0
gi|240169558|ref|ZP_04748217.1| hydrogenase HycQ [Mycobacterium ... 636 2e-180
gi|342862429|ref|ZP_08719069.1| putative hydrogenase HycQ [Mycob... 630 1e-178
gi|296166647|ref|ZP_06849073.1| hydrogenase-4, F subunit [Mycoba... 627 1e-177
gi|118462524|ref|YP_884228.1| hydrogenase-4, F subunit, putative... 592 5e-167
gi|333991246|ref|YP_004523860.1| hydrogenase HycQ [Mycobacterium... 543 3e-152
gi|298527478|ref|ZP_07014887.1| hydrogenase [Mycobacterium tuber... 524 1e-146
gi|336178231|ref|YP_004583606.1| NADH dehydrogenase (quinone) [F... 373 4e-101
gi|317126122|ref|YP_004100234.1| NADH/Ubiquinone/plastoquinone (... 372 1e-100
gi|119718685|ref|YP_925650.1| NADH dehydrogenase (quinone) [Noca... 313 5e-83
gi|258653158|ref|YP_003202314.1| NADH/Ubiquinone/plastoquinone (... 311 2e-82
gi|269128895|ref|YP_003302265.1| NADH/Ubiquinone/plastoquinone (... 308 2e-81
gi|325578548|ref|ZP_08148648.1| hydrogenase-4 component F [Haemo... 291 1e-76
gi|258593563|emb|CBE69904.1| Hydrogenase-4 component F [NC10 bac... 285 2e-74
gi|338812157|ref|ZP_08624346.1| NADH dehydrogenase (quinone) [Ac... 281 2e-73
gi|343518711|ref|ZP_08755701.1| hydrogenase 4 subunit F [Haemoph... 278 1e-72
gi|91202883|emb|CAJ72522.1| strongly similar to membrane-bound [... 277 4e-72
gi|260913687|ref|ZP_05920163.1| hydrogenase subunit [Pasteurella... 275 2e-71
gi|251792880|ref|YP_003007606.1| hydrogenase-4 subunit F [Aggreg... 275 2e-71
gi|293392058|ref|ZP_06636392.1| hydrogenase-4 component F [Aggre... 274 2e-71
gi|261868402|ref|YP_003256324.1| hydrogenase-4 subunit F [Aggreg... 273 4e-71
gi|345430346|ref|YP_004823467.1| hydrogenase 4, membrane subunit... 272 1e-70
gi|312110877|ref|YP_003989193.1| NADH/Ubiquinone/plastoquinone (... 271 2e-70
gi|220929110|ref|YP_002506019.1| NADH/Ubiquinone/plastoquinone (... 269 8e-70
gi|147919459|ref|YP_686801.1| hydrogenase, membrane subunit 1-li... 268 2e-69
gi|341948990|gb|EGT75605.1| hydrogenase-4 component F [Haemophil... 265 9e-69
gi|341956341|gb|EGT82771.1| hydrogenase-4 component F [Haemophil... 265 1e-68
gi|341949807|gb|EGT76406.1| hydrogenase-4 component F [Haemophil... 265 2e-68
gi|238749932|ref|ZP_04611436.1| Hydrogenase-4 component F [Yersi... 265 2e-68
gi|326202173|ref|ZP_08192043.1| NADH/Ubiquinone/plastoquinone (c... 264 2e-68
gi|83591011|ref|YP_431020.1| hydrogenase 4 subunit F [Moorella t... 264 2e-68
gi|325288317|ref|YP_004264498.1| NADH dehydrogenase (quinone) [S... 263 4e-68
gi|342903801|ref|ZP_08725605.1| hydrogenase-4 component F [Haemo... 263 5e-68
gi|334341775|ref|YP_004546755.1| NADH/Ubiquinone/plastoquinone (... 263 5e-68
gi|238793447|ref|ZP_04637072.1| Hydrogenase-4 component F [Yersi... 262 8e-68
gi|89074817|ref|ZP_01161271.1| NADH dehydrogenase subunit N [Pho... 261 2e-67
gi|258514104|ref|YP_003190326.1| NADH/Ubiquinone/plastoquinone (... 258 1e-66
gi|341955809|gb|EGT82259.1| hydrogenase-4 component F [Haemophil... 258 1e-66
gi|90426042|ref|YP_534412.1| hydrogenase 4 subunit F [Rhodopseud... 258 2e-66
gi|94313590|ref|YP_586799.1| hydrogenase 4 subunit F [Cupriavidu... 258 2e-66
gi|238788861|ref|ZP_04632652.1| Hydrogenase-4 component F [Yersi... 256 5e-66
gi|238784031|ref|ZP_04628046.1| Hydrogenase-4 component F [Yersi... 256 9e-66
gi|139437058|ref|ZP_01771218.1| Hypothetical protein COLAER_0019... 255 1e-65
>gi|15607228|ref|NP_214600.1| hydrogenase HycQ [Mycobacterium tuberculosis H37Rv]
gi|15839467|ref|NP_334504.1| NADH-ubiquinone oxidoreductase, putative [Mycobacterium tuberculosis
CDC1551]
gi|148659848|ref|YP_001281371.1| putative hydrogenase HycQ [Mycobacterium tuberculosis H37Ra]
55 more sequence titles
Length=488
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/488 (100%), Positives = 488/488 (100%), Gaps = 0/488 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG
Sbjct 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL
Sbjct 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG
Sbjct 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST
Sbjct 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL
Sbjct 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI
Sbjct 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
Query 481 AASNVGLP 488
AASNVGLP
Sbjct 481 AASNVGLP 488
>gi|254366542|ref|ZP_04982586.1| hydrogenase hycQ [Mycobacterium tuberculosis str. Haarlem]
gi|134152054|gb|EBA44099.1| hydrogenase hycQ [Mycobacterium tuberculosis str. Haarlem]
Length=488
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/488 (99%), Positives = 488/488 (100%), Gaps = 0/488 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG
Sbjct 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL
Sbjct 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIW+AIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVCANNIGVIWIAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG
Sbjct 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST
Sbjct 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL
Sbjct 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI
Sbjct 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
Query 481 AASNVGLP 488
AASNVGLP
Sbjct 481 AASNVGLP 488
>gi|31791264|ref|NP_853757.1| hydrogenase HycQ [Mycobacterium bovis AF2122/97]
gi|121635999|ref|YP_976222.1| putative hydrogenase hycQ [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224988472|ref|YP_002643159.1| putative hydrogenase [Mycobacterium bovis BCG str. Tokyo 172]
gi|31616849|emb|CAD92951.1| POSSIBLE HYDROGENASE HYCQ [Mycobacterium bovis AF2122/97]
gi|121491646|emb|CAL70104.1| Possible hydrogenase hycQ [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224771585|dbj|BAH24391.1| putative hydrogenase [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600015|emb|CCC62683.1| possible hydrogenase hycQ [Mycobacterium bovis BCG str. Moreau
RDJ]
Length=488
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/488 (99%), Positives = 487/488 (99%), Gaps = 0/488 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG
Sbjct 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA VL
Sbjct 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCATVL 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG
Sbjct 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST
Sbjct 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL
Sbjct 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI
Sbjct 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
Query 481 AASNVGLP 488
AASNVGLP
Sbjct 481 AASNVGLP 488
>gi|308373882|ref|ZP_07433990.2| hydrogenase hycQ [Mycobacterium tuberculosis SUMu006]
gi|308375060|ref|ZP_07667938.1| hydrogenase hycQ [Mycobacterium tuberculosis SUMu007]
gi|308376301|ref|ZP_07668248.1| hydrogenase hycQ [Mycobacterium tuberculosis SUMu008]
7 more sequence titles
Length=485
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/485 (99%), Positives = 485/485 (100%), Gaps = 0/485 (0%)
Query 4 LLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLR 63
+LLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLR
Sbjct 1 MLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLR 60
Query 64 ADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVC 123
ADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVC
Sbjct 61 ADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVC 120
Query 124 ANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAAR 183
ANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAAR
Sbjct 121 ANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAAR 180
Query 184 DSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPA 243
DSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPA
Sbjct 181 DSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPA 240
Query 244 PVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVK 303
PVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVK
Sbjct 241 PVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVK 300
Query 304 RMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIA 363
RMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIA
Sbjct 301 RMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIA 360
Query 364 DITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAI 423
DITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAI
Sbjct 361 DITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAI 420
Query 424 GFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGIAAS 483
GFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGIAAS
Sbjct 421 GFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGIAAS 480
Query 484 NVGLP 488
NVGLP
Sbjct 481 NVGLP 485
>gi|289748554|ref|ZP_06507932.1| LOW QUALITY PROTEIN: hydrogenase hycQ [Mycobacterium tuberculosis
T92]
gi|289689141|gb|EFD56570.1| LOW QUALITY PROTEIN: hydrogenase hycQ [Mycobacterium tuberculosis
T92]
Length=489
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/416 (100%), Positives = 416/416 (100%), Gaps = 0/416 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG
Sbjct 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL
Sbjct 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG
Sbjct 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST
Sbjct 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGA 416
AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGA
Sbjct 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGA 416
>gi|340625121|ref|YP_004743573.1| putative hydrogenase HYCQ [Mycobacterium canettii CIPT 140010059]
gi|340003311|emb|CCC42428.1| putative hydrogenase HYCQ [Mycobacterium canettii CIPT 140010059]
Length=489
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/488 (93%), Positives = 465/488 (96%), Gaps = 0/488 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAPLAASIA ++ GWR TTATLT LSA TVLACAV M F GSGAQFGLGG
Sbjct 1 MTGLLLAAILAPLAASIAGMVAGWRHTTATLTVLSAATVLACAVVMAFRTGSGAQFGLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLRADALTV+MLVVIGIVGTLATAASIGYID ELAHGHID R ARLYGVLTPAFLCAMVL
Sbjct 61 LLRADALTVIMLVVIGIVGTLATAASIGYIDAELAHGHIDERGARLYGVLTPAFLCAMVL 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIA+AFLGTVLLYF
Sbjct 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAIAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AARD+GAA A ALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AARDAGAADASALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLLAVA SVLIRLRPI+DA +GP YLRNGL+VVGLATLLVAVLMLTVTG
Sbjct 241 APAPVSALMSGVLLAVALSVLIRLRPIIDAATGPTYLRNGLVVVGLATLLVAVLMLTVTG 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
DVKRMLAYSSME+MGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHD T
Sbjct 301 DVKRMLAYSSMENMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDCT 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
A+ADITGV+RRSRLIGVSFA G+IVLLGLPPFAMFASELAIARSLA+ RLAWVLGAALLL
Sbjct 361 AVADITGVLRRSRLIGVSFATGVIVLLGLPPFAMFASELAIARSLAHARLAWVLGAALLL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
IAIGF ALARNSGR+LLGTPAAGAPAITVPATAAAAL+ GIVVSAALGITAGPL DLLGI
Sbjct 421 IAIGFAALARNSGRILLGTPAAGAPAITVPATAAAALIAGIVVSAALGITAGPLTDLLGI 480
Query 481 AASNVGLP 488
AASNVGLP
Sbjct 481 AASNVGLP 488
>gi|118617495|ref|YP_905827.1| hydrogenase HycQ [Mycobacterium ulcerans Agy99]
gi|118569605|gb|ABL04356.1| hydrogenase HycQ [Mycobacterium ulcerans Agy99]
Length=488
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/486 (73%), Positives = 392/486 (81%), Gaps = 0/486 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MT L+L I+APL A+ +L GWRR TA LT LSA VL +A+G LGG
Sbjct 1 MTALILVPIVAPLVAAAFALAGGWRRATAVLTVLSAVAVLGSGIALGLQATPQPHLVLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLR DAL+V+ML+VIG VGTLAT ASIGYID EL HGH D R ARLYG L PAFL AM +
Sbjct 61 LLRVDALSVIMLIVIGAVGTLATWASIGYIDAELEHGHTDRRDARLYGALMPAFLAAMAI 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AV ANNIG+IWVA+EATTV+TAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVSANNIGLIWVAVEATTVVTAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AA+ +GA A ALNLD+L AA L+P V RLAGGLLLIGYGAK GL PFH WLADAHSQ
Sbjct 181 AAQHAGADGANALNLDVLTACAAHLNPAVTRLAGGLLLIGYGAKVGLAPFHGWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLL+VAFSVLIRLRP++DA GP YLR GLL VGL T+L+A +LTV
Sbjct 241 APAPVSALMSGVLLSVAFSVLIRLRPVIDAAVGPGYLRAGLLTVGLTTVLIAAFLLTVVT 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KRMLAYSSME+MGLIAIAAAAGT LAIAALLLHVLAHGIGKTVLFLAGGQLQ+AHDS
Sbjct 301 DLKRMLAYSSMENMGLIAIAAAAGTKLAIAALLLHVLAHGIGKTVLFLAGGQLQSAHDSA 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
+IADIT V+ RSR++GVSFAVG++VLLGLPPFAMF+SE++IARSLAN LAWVLG LLL
Sbjct 361 SIADITAVLSRSRVVGVSFAVGVVVLLGLPPFAMFSSEVSIARSLANSGLAWVLGVTLLL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
+ + F AL NS RMLLG + GAP I VPAT AAAL+ G+V ALG+TAGPL L
Sbjct 421 MVVAFAALVANSRRMLLGAASEGAPRIAVPATVAAALVTGVVACIALGVTAGPLGGLFDA 480
Query 481 AASNVG 486
AA G
Sbjct 481 AAGQFG 486
>gi|183981672|ref|YP_001849963.1| hydrogenase HycQ [Mycobacterium marinum M]
gi|183174998|gb|ACC40108.1| hydrogenase HycQ [Mycobacterium marinum M]
Length=488
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/486 (73%), Positives = 392/486 (81%), Gaps = 0/486 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MT L+L I+APL A+ +L GWRR TA LT LSA VL +A+G LGG
Sbjct 1 MTALILVPIVAPLVAAAFALAGGWRRATAVLTVLSAVAVLGSGIALGLQATPQPHLVLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLR DAL+V+ML+VIG VGTLAT ASIGYID EL HGH D R ARLYG L PAFL AM +
Sbjct 61 LLRVDALSVIMLIVIGAVGTLATWASIGYIDAELEHGHTDRRDARLYGALMPAFLAAMAI 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AV ANNIG+IWVA+EATTV+TAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVSANNIGLIWVAVEATTVVTAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AA+ +GA A ALNLD+L AA L+P V RLAGGLLLIGYGAK GL PFH WLADAHSQ
Sbjct 181 AAQHAGADGANALNLDVLTACAAHLNPAVTRLAGGLLLIGYGAKVGLAPFHGWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLL+VAFSVLIRLRP++DA GP YLR GLL VGL T+L+A +LTV
Sbjct 241 APAPVSALMSGVLLSVAFSVLIRLRPVIDAAVGPGYLRAGLLTVGLTTVLIAAFLLTVVT 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KRMLAYSSME+MGLIAIAAAAGT LAIAALLLHVLAHGIGKTVLFLAGGQLQ+AHDS
Sbjct 301 DLKRMLAYSSMENMGLIAIAAAAGTKLAIAALLLHVLAHGIGKTVLFLAGGQLQSAHDSA 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
+IADIT V+ RSR++GVSFAVG++VLLGLPPFAMFASE++IARSLA+ LAWVLG LLL
Sbjct 361 SIADITAVLSRSRVVGVSFAVGVVVLLGLPPFAMFASEVSIARSLADSGLAWVLGVTLLL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
+ + F AL NS RMLLG + GAP I VPAT AAAL+ G+V ALG+TAGPL L
Sbjct 421 MVVAFAALVANSRRMLLGAASEGAPRIAVPATVAAALVTGVVACIALGVTAGPLGGLFDA 480
Query 481 AASNVG 486
AA G
Sbjct 481 AAGQFG 486
>gi|240169558|ref|ZP_04748217.1| hydrogenase HycQ [Mycobacterium kansasii ATCC 12478]
Length=488
Score = 636 bits (1641), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 354/486 (73%), Positives = 401/486 (83%), Gaps = 0/486 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MT L+L ILAPL A++ ++ GWRR TATLT LSA VLA VA+G + + L G
Sbjct 1 MTVLMLVPILAPLIAAVVAMAGGWRRWTATLTVLSAVAVLASGVALGVQTAARPRVLLAG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
+LR DAL+V ML+VIG+VG+LAT ASIGY+D+EL H D R AR YG LTPAFL AM +
Sbjct 61 MLRVDALSVTMLIVIGVVGSLATWASIGYLDSELEDDHTDLRDARRYGALTPAFLSAMAV 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIWVA+EATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGT +LYF
Sbjct 121 AVCANNIGVIWVAVEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTAMLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AAR +GA A AL+LD+L HAA LDP V RLAGGLLLIGYGAK GL PFH WLADAHSQ
Sbjct 181 AARHAGAVGATALDLDVLTAHAAHLDPAVTRLAGGLLLIGYGAKVGLVPFHGWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLL+VAFSVLIRLRPI+DA GP +LR+GLL GLAT+L+A L+LTVT
Sbjct 241 APAPVSALMSGVLLSVAFSVLIRLRPIIDAAVGPGFLRSGLLTAGLATVLIAALLLTVTT 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KRMLAYSSME+MGLIAIAAAAGT LAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST
Sbjct 301 DLKRMLAYSSMENMGLIAIAAAAGTKLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
AI +IT V+ RSRL+G SFAVG+I LLGLPPFAMFASE+AIARSLA+ L+WVLG AL+L
Sbjct 361 AIGEITAVLSRSRLVGWSFAVGVIALLGLPPFAMFASEVAIARSLASAGLSWVLGVALVL 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGI 480
+ + F A+A N+ R+LLG P+AGAP I VPAT AAA+ G++ S ALG TAGPLA L
Sbjct 421 MVVAFAAVAGNAQRILLGVPSAGAPRIAVPATVAAAVTTGVIASVALGATAGPLAGLFNA 480
Query 481 AASNVG 486
AA G
Sbjct 481 AAGQFG 486
>gi|342862429|ref|ZP_08719069.1| putative hydrogenase HycQ [Mycobacterium colombiense CECT 3035]
gi|342130100|gb|EGT83434.1| putative hydrogenase HycQ [Mycobacterium colombiense CECT 3035]
Length=492
Score = 630 bits (1626), Expect = 1e-178, Method: Compositional matrix adjust.
Identities = 382/489 (79%), Positives = 416/489 (86%), Gaps = 3/489 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAP+AAS+A+LI GWRR TA+LT LSA TV AC VA+G GSGA+F LGG
Sbjct 1 MTGLLLAAILAPVAASLATLIGGWRRATASLTVLSAATVFACGVALGCGAGSGARFALGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLR DAL+V ML+VIG V TLAT AS+GYI TELA GH D R AR YGVLTPAFL AMV+
Sbjct 61 LLRVDALSVTMLIVIGTVATLATWASVGYIGTELARGHTDARGARTYGVLTPAFLAAMVV 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AV ANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIA+AFLGTVLLY+
Sbjct 121 AVSANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAIAFLGTVLLYY 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AA +GA AA ALNLD L HAA LD G ARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AAEHAGAPAAAALNLDALTAHAAQLDSGTARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLL+VA SVLIR+RPI+DA +G A++R+GLLV GLATL++A LMLTVT
Sbjct 241 APAPVSALMSGVLLSVAVSVLIRIRPIIDAATGTAFMRSGLLVTGLATLIIAALMLTVTS 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KRMLAYSSME+MGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST
Sbjct 301 DIKRMLAYSSMENMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
AIADIT V+RRSR++GVS G+IVLLGLPPFAMFASEL+I R+LAN RL WVL A LL
Sbjct 361 AIADITAVLRRSRMLGVSIVAGVIVLLGLPPFAMFASELSIVRALANARLTWVLAAGLLA 420
Query 421 IAIGFTALARNSGRMLLGTPAAG---APAITVPATAAAALMVGIVVSAALGITAGPLADL 477
IAI F ALARNSGR+LLG AP I VP T AAAL +G+ S ALG+TAGPLA L
Sbjct 421 IAIAFAALARNSGRILLGGATGASEVAPEIVVPKTIAAALTLGVAASIALGVTAGPLAGL 480
Query 478 LGIAASNVG 486
AA VG
Sbjct 481 FTAAAGIVG 489
>gi|296166647|ref|ZP_06849073.1| hydrogenase-4, F subunit [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897982|gb|EFG77562.1| hydrogenase-4, F subunit [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=488
Score = 627 bits (1618), Expect = 1e-177, Method: Compositional matrix adjust.
Identities = 359/478 (76%), Positives = 407/478 (86%), Gaps = 1/478 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MT LLAAILAP+ AS+A L+ GWRR+TATL ALSA TVLAC A+ F +GSG + LGG
Sbjct 1 MTAPLLAAILAPVGASVAVLVAGWRRSTATLIALSALTVLACGAALAFRVGSGTRLALGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLR DAL+V ML+VIG V LAT AS+GY++ EL GH D AR+YG LT FL AMV+
Sbjct 61 LLRLDALSVTMLIVIGTVAALATWASVGYLEIELERGHTDPAGARVYGALTAGFLAAMVV 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIW+AIEATTVITAFLVGHRRTR ALEATWKYVVICSVGIAVAFLGTVLLY+
Sbjct 121 AVCANNIGVIWIAIEATTVITAFLVGHRRTRGALEATWKYVVICSVGIAVAFLGTVLLYY 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AA +GA AA ALNLD+L HA GLDPG+ARLAGGLLL+GYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AAEHAGAPAAAALNLDVLTAHAGGLDPGIARLAGGLLLVGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
APAPVSALMSGVLL+VAFSV++RL PI+ +GPA++R+GLLV+GLATL+VA LMLTV
Sbjct 241 APAPVSALMSGVLLSVAFSVVLRLEPIIGTATGPAFMRSGLLVIGLATLVVAALMLTVAA 300
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KRMLAYSSME+MGLIAIAAAAGT+LAIAALLLHVLAHGIGKTVLFL+ GQLQA H+ST
Sbjct 301 DIKRMLAYSSMENMGLIAIAAAAGTSLAIAALLLHVLAHGIGKTVLFLSSGQLQATHNST 360
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
AIADI V+RRSRL+GVS AVG++VLLGLPPFAMFASELAI RSLA+ RL WVL AA+L
Sbjct 361 AIADINAVLRRSRLLGVSLAVGVVVLLGLPPFAMFASELAIVRSLADARLTWVLAAAMLF 420
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLL 478
+A+ F ALARN+GR+LLG A AP I VP T AAAL+VG+ S ALG+TAGPL DL
Sbjct 421 VAVAFAALARNAGRILLGG-AGAAPEIVVPRTVAAALLVGVGASIALGVTAGPLTDLF 477
>gi|118462524|ref|YP_884228.1| hydrogenase-4, F subunit, putative [Mycobacterium avium 104]
gi|118163811|gb|ABK64708.1| hydrogenase-4, F subunit, putative [Mycobacterium avium 104]
Length=489
Score = 592 bits (1526), Expect = 5e-167, Method: Compositional matrix adjust.
Identities = 364/464 (79%), Positives = 394/464 (85%), Gaps = 0/464 (0%)
Query 23 GWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVMLVVIGIVGTLA 82
GWRR T+T+T LSA TVL C A+ F +GS F LGGLLR DAL V ML+VIGIVGTLA
Sbjct 23 GWRRLTSTVTVLSAATVLGCGAALSFTVGSQQYFVLGGLLRVDALCVTMLIVIGIVGTLA 82
Query 83 TAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAIEATTVITA 142
T ASIGYID E A GH D ARLYG LTPAFL AMV+AVCANNIGVIWVAIEATTVITA
Sbjct 83 TWASIGYIDAECADGHTDAGGARLYGALTPAFLAAMVVAVCANNIGVIWVAIEATTVITA 142
Query 143 FLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALNLDILAEHA 202
FLVGHRRTRTALEATWKYV+ICSVGIA+AFLGTVLLYFAAR +GA+AA ALNLD+L HA
Sbjct 143 FLVGHRRTRTALEATWKYVIICSVGIAIAFLGTVLLYFAARHAGASAALALNLDVLGAHA 202
Query 203 AGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLLAVAFSVLI 262
LDP V+RLAGGLLLIGYGAKAGL PFHTWLADAHSQAPAPVSALMSGVLL+VA SVLI
Sbjct 203 HTLDPAVSRLAGGLLLIGYGAKAGLAPFHTWLADAHSQAPAPVSALMSGVLLSVAMSVLI 262
Query 263 RLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAA 322
R+ PI+ A +GP +LR GLL VGL TL VA LMLTVTGDVKRMLAYSSME+MGLIAIAAA
Sbjct 263 RITPIVGAAAGPTFLRAGLLTVGLVTLFVAALMLTVTGDVKRMLAYSSMENMGLIAIAAA 322
Query 323 AGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRLIGVSFAVG 382
AGTTLAIAALLLHVLAHG+GKTVLFLAGGQLQAAH STAIADITGV++RS LIG SFAVG
Sbjct 323 AGTTLAIAALLLHVLAHGVGKTVLFLAGGQLQAAHGSTAIADITGVVQRSHLIGGSFAVG 382
Query 383 LIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAIGFTALARNSGRMLLGTPAA 442
LIVLLGLPPFAMFASELA+A +LA+ RLAWVLGAA+LLIAI F AL RN+ RMLLG AA
Sbjct 383 LIVLLGLPPFAMFASELALAHALADARLAWVLGAAMLLIAIAFAALVRNASRMLLGPAAA 442
Query 443 GAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGIAASNVG 486
AP IT P T AAL+VG+ S LG+TAGPL DL AA +G
Sbjct 443 AAPPITAPTTVTAALLVGVAASIVLGVTAGPLTDLFSTAAGQLG 486
>gi|333991246|ref|YP_004523860.1| hydrogenase HycQ [Mycobacterium sp. JDM601]
gi|333487214|gb|AEF36606.1| hydrogenase HycQ [Mycobacterium sp. JDM601]
Length=487
Score = 543 bits (1399), Expect = 3e-152, Method: Compositional matrix adjust.
Identities = 334/472 (71%), Positives = 390/472 (83%), Gaps = 1/472 (0%)
Query 15 ASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVMLVV 74
AS+ S+ GWRR +A T SA T+L C VA+GF + A L GLLRADAL+ ML+V
Sbjct 15 ASLLSVAVGWRRLSAVATLGSALTILGCGVALGFRVDDRAHLALNGLLRADALSATMLIV 74
Query 75 IGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAI 134
IG+V +LAT ASIGY+D ELA G D R AR+YGVLTPAFL AMVLAV ANNIGV+WVA+
Sbjct 75 IGVVASLATWASIGYVDAELARGVTDRRGARIYGVLTPAFLAAMVLAVSANNIGVVWVAV 134
Query 135 EATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALN 194
EATTV+TAFLVGH R+R ALEATWKYV++CSVGI VAFLGTVLL+FAAR +GA AL+
Sbjct 135 EATTVVTAFLVGHHRSRAALEATWKYVMVCSVGITVAFLGTVLLHFAARHAGAGD-DALH 193
Query 195 LDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLL 254
LD+LA HAA LDP V RLAG LLLIGYGAK GL PFHTWLADAHSQAPAPVSALMSGVLL
Sbjct 194 LDVLAAHAAALDPAVTRLAGALLLIGYGAKMGLAPFHTWLADAHSQAPAPVSALMSGVLL 253
Query 255 AVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHM 314
+VAFSVLIRL+PI+DA +GPA+LR LL GLATLL+A L+LTVT D+KR+LAYSSME M
Sbjct 254 SVAFSVLIRLKPIIDAATGPAFLRAALLATGLATLLIAALLLTVTTDLKRLLAYSSMETM 313
Query 315 GLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRL 374
GL+A+AAAAGT LA+AALLLHVLAHG+GKTVLFLAGGQLQAAH +TAI++ITGV+ RSRL
Sbjct 314 GLMAVAAAAGTRLAVAALLLHVLAHGVGKTVLFLAGGQLQAAHGTTAISEITGVLGRSRL 373
Query 375 IGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAIGFTALARNSGR 434
+G +FAVG++VLLGLPPFAMFASELAIA +LA+ RLAW LG AL+ + + F AL SGR
Sbjct 374 VGGAFAVGMVVLLGLPPFAMFASELAIATALADARLAWALGLALVALLVAFAALMAKSGR 433
Query 435 MLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADLLGIAASNVG 486
+LLGTP+A P I VPAT AAAL+ G++VS ALG+TAGPL L AA+ +G
Sbjct 434 ILLGTPSADGPTILVPATVAAALVTGVLVSLALGVTAGPLTGLFTAAATQLG 485
>gi|298527478|ref|ZP_07014887.1| hydrogenase [Mycobacterium tuberculosis 94_M4241A]
gi|298497272|gb|EFI32566.1| hydrogenase [Mycobacterium tuberculosis 94_M4241A]
Length=293
Score = 524 bits (1349), Expect = 1e-146, Method: Compositional matrix adjust.
Identities = 274/280 (98%), Positives = 274/280 (98%), Gaps = 0/280 (0%)
Query 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG
Sbjct 1 MTGLLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGG 60
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL
Sbjct 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF
Sbjct 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ
Sbjct 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNG 280
APAPVSALMSGVLLAVAFSVLIRLRPILDAVSG G
Sbjct 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGSPTCATG 280
>gi|336178231|ref|YP_004583606.1| NADH dehydrogenase (quinone) [Frankia symbiont of Datisca glomerata]
gi|334859211|gb|AEH09685.1| NADH dehydrogenase (quinone) [Frankia symbiont of Datisca glomerata]
Length=527
Score = 373 bits (958), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 242/492 (50%), Positives = 319/492 (65%), Gaps = 15/492 (3%)
Query 4 LLLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWM-GSGAQFGLGGLL 62
LL A + LA + + GWR TA +S T+L CA+ + + G G G GGL
Sbjct 34 LLTAPVAVALATAAGYAVLGWRPATAWAGLVSPATILGCAIVLAVRVPGHGPVTGYGGLA 93
Query 63 RADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAV 122
RADAL+ +L+VIG V LA AAS Y+ E A GH D R AR YG+L AFL AM +AV
Sbjct 94 RADALSAWILLVIGAVAVLACAASPAYLAAENAAGHTDARGARRYGILVHAFLAAMAVAV 153
Query 123 CANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAA 182
N+GV+WVAIEATT++TAFLVGHRRTR ++EA WKYVVICS GIA+AFLGT+L+Y+AA
Sbjct 154 LVANLGVLWVAIEATTIVTAFLVGHRRTRASVEAAWKYVVICSAGIALAFLGTILIYYAA 213
Query 183 RDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAP 242
R +G + A AL+ +L A LDP V R+ L+++G+GAKAGL P H WL DAHSQAP
Sbjct 214 RQAGISEASALDWPVLVARAHELDPAVTRMGIALVILGFGAKAGLVPLHAWLPDAHSQAP 273
Query 243 APVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG-- 300
APVSALMSGVLLAV+F+ ++R + I D GP + R L+VG A L +A+ + G
Sbjct 274 APVSALMSGVLLAVSFTAILRYKVIADVALGPGFART--LLVGAAVLTLALAAALLLGQR 331
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D KRMLAYSSMEHM LIA+ AAAG+ LA +A+LLH+ HG+ K+V F + G + +T
Sbjct 332 DYKRMLAYSSMEHMSLIALGAAAGSRLATSAVLLHIAGHGLAKSVAFCSSGHILHLRHTT 391
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARS--LANERLAWVLGAAL 418
I + G++ ++ ++ +F + ++ LLG PPF++FASELAIAR+ L W AAL
Sbjct 392 RIGRVRGLLGQAPVLAAAFGLAVLALLGFPPFSLFASELAIARAGFTGPAGLGWATAAAL 451
Query 419 LLIAIGFTALARNSGRMLLGTPAAGAPAIT---VPATAAAA----LMVGIVVSAALGITA 471
+L+ F A+ + MLLG PA G T VP AA L VG++ AALG++
Sbjct 452 VLVLAAFAAMTVRTAHMLLG-PAPGRDGGTTAAVPVRFGAAVWVPLAVGLLACAALGVSD 510
Query 472 GPLADLLGIAAS 483
PL+ LL AA+
Sbjct 511 VPLSSLLSTAAA 522
>gi|317126122|ref|YP_004100234.1| NADH/Ubiquinone/plastoquinone (complex I) [Intrasporangium calvum
DSM 43043]
gi|315590210|gb|ADU49507.1| NADH/Ubiquinone/plastoquinone (complex I) [Intrasporangium calvum
DSM 43043]
Length=510
Score = 372 bits (954), Expect = 1e-100, Method: Compositional matrix adjust.
Identities = 223/439 (51%), Positives = 293/439 (67%), Gaps = 5/439 (1%)
Query 12 PLAASIASLITGWRRTTATLTALSATTV-----LACAVAMGFWMGSGAQFGLGGLLRADA 66
PLAA + +T W T L A+ A+ V L VA+ G +G LR DA
Sbjct 30 PLAAPLLVSMTAWFIRTDRLLAVRASIVAAAVILGSGVAVAVVNVRGEVPAVGSTLRVDA 89
Query 67 LTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANN 126
L+ VML+VIG VG +AT AS+ Y+ E+ GH R R Y VL PAFL AMVLAV ANN
Sbjct 90 LSAVMLIVIGAVGLIATTASVDYLQGEINGGHTTDRRVRAYSVLLPAFLTAMVLAVVANN 149
Query 127 IGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSG 186
+G++W AIEATT++TAFLVGH R+R ++EATWKYV+ICSVGIA+A+LGTVL+++AAR +G
Sbjct 150 LGLLWAAIEATTIVTAFLVGHHRSRGSVEATWKYVIICSVGIALAYLGTVLVHYAARHAG 209
Query 187 AAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVS 246
A + AL+ L+ AA LDP V R+A LL++G+GAKAG+ P H+WL DAHSQAPAPVS
Sbjct 210 LAESAALDWTALSAGAARLDPDVMRVAFALLVLGFGAKAGMAPLHSWLPDAHSQAPAPVS 269
Query 247 ALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRML 306
ALMSGVLL VA L+R R I G +R LLVV L +L +A ++ D KR+L
Sbjct 270 ALMSGVLLPVAVYALLRYRVIAAPSLGEHQVRLLLLVVALGSLALAASLIIAQRDYKRLL 329
Query 307 AYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADIT 366
AYSS+EHM L+ I A GT LA+AALLLH++ HG+GK VLF G++ A ST+I +
Sbjct 330 AYSSIEHMSLVVIGVAIGTPLAVAALLLHIVGHGLGKAVLFCGAGRILATEGSTSIRSVR 389
Query 367 GVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAIGFT 426
G++ R + FA G+ LLGLPPF++FASE+ +AR+ + L WV+ AA+ L+A+ F
Sbjct 390 GLLVRRPALAAVFAAGIAALLGLPPFSLFASEVGLARAGTSAGLGWVIAAAMALVAVIFV 449
Query 427 ALARNSGRMLLGTPAAGAP 445
A+ + M+LG P G P
Sbjct 450 AITVHVAPMVLGRPTPGQP 468
>gi|119718685|ref|YP_925650.1| NADH dehydrogenase (quinone) [Nocardioides sp. JS614]
gi|119539346|gb|ABL83963.1| NADH dehydrogenase (quinone) [Nocardioides sp. JS614]
Length=428
Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 207/429 (49%), Positives = 274/429 (64%), Gaps = 13/429 (3%)
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
L GLLR DAL+ ML VIG VG A+ G +D H+ Y VL FL A
Sbjct 11 LDGLLRVDALSAFMLTVIGSVGL---TAAWGALDPLRPRDHV-------YSVLALLFLGA 60
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M LAV A+N+GV+W+A+EATT+ TAF+VGH RTR A+EA WKYVV+ SVG+A+AFLG VL
Sbjct 61 MSLAVLADNLGVLWIAVEATTIATAFMVGHHRTRRAIEAAWKYVVLGSVGVAIAFLGIVL 120
Query 178 LYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADA 237
LY A R +G L+ +LA LDP V R+A L ++G+ KAGL P H+WL DA
Sbjct 121 LYAATRSAGEPT---LSWSVLATTHPDLDPSVVRVAAALAILGFATKAGLAPMHSWLPDA 177
Query 238 HSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLT 297
HSQAPAPVS LMSGVLLAVAF ++R++ I V G +R L+ GL +L +A L++
Sbjct 178 HSQAPAPVSGLMSGVLLAVAFYAILRVQAIATPVIGTGLMRGLLVTAGLLSLTLAALLVI 237
Query 298 VTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAH 357
D+KRMLAYSS+EHMGL+A+AAAAG LAIA LLHVL HG+ K+ F+A G++ AA
Sbjct 238 RQRDLKRMLAYSSIEHMGLLALAAAAGGRLAIAGALLHVLGHGLAKSSTFVASGRILAAE 297
Query 358 DSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAA 417
+T +ADI G++ R + V F VG++ LLGLPPF++F SE+AI + L W + A
Sbjct 298 GTTTMADIHGLVARRPGVAVPFLVGVVALLGLPPFSLFFSEVAIVVGGVQQGLGWAMAVA 357
Query 418 LLLIAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGITAGPLADL 477
+L++ + F A++R+ ML G AA P L++ + + +G AGP A L
Sbjct 358 VLMLLVMFVAMSRHVVAMLFGGAAAATDPDRAPYGPRLPLVLALAATGVVGFVAGPFATL 417
Query 478 LGIAASNVG 486
L AAS +G
Sbjct 418 LDRAASVLG 426
>gi|258653158|ref|YP_003202314.1| NADH/Ubiquinone/plastoquinone (complex I) [Nakamurella multipartita
DSM 44233]
gi|258556383|gb|ACV79325.1| NADH/Ubiquinone/plastoquinone (complex I) [Nakamurella multipartita
DSM 44233]
Length=537
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 202/396 (52%), Positives = 268/396 (68%), Gaps = 11/396 (2%)
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
LGGLL ADAL+ MLVVIG V +A A+ G++ ELA G ID + + L FL A
Sbjct 73 LGGLLAADALSAFMLVVIGAVALIAALATPGHLRVELAAGRIDATTRTRHLALVQLFLAA 132
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M LAV A +G++WVA+E TTV+TAFLVG R R A EA WKYV+ICS GIA+A LGT L
Sbjct 133 MALAVLAAGLGLLWVAVELTTVVTAFLVGQGRGRRAAEAAWKYVIICSTGIALALLGTFL 192
Query 178 LYFAARDSGAAAAGALNLDILAEHAAG--LDPGVARLAGGLLLIGYGAKAGLFPFHTWLA 235
L AA +GA +LD L+ AAG LDPGV R+A LL++G+G KAGL P H WL
Sbjct 193 LNAAAERAGA------SLDWLSLTAAGPDLDPGVTRIAVVLLVLGFGTKAGLAPMHAWLP 246
Query 236 DAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLM 295
DAHSQAPAPVSALMSGVL++VAF ++R++ + D GP + R L+V+ LA++ +A +
Sbjct 247 DAHSQAPAPVSALMSGVLISVAFYAVLRVKVVADLALGPDFTRALLIVLALASIALAASL 306
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
L D KRMLAYSS+E+M L+A+ AA G+ LAIAA+LLH+L HG+ K+ LF+A G++
Sbjct 307 LIAQRDYKRMLAYSSIENMALLALGAAIGSPLAIAAVLLHILGHGLVKSGLFVAAGRILQ 366
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
++ I + G++ R ++G F +G++ ++ PPF++FASEL IAR+ L WV
Sbjct 367 LTGTSRIDHVRGLVAREPVLGWCFGLGILAIVAFPPFSLFASELGIARAGFAAGLGWVTA 426
Query 416 AALLLIAIGFTALARNSGRMLLGTPAA---GAPAIT 448
AALLL+ + AL ++ RMLLG PAA GAPA T
Sbjct 427 AALLLVLVCAAALIGHTSRMLLGAPAATANGAPATT 462
>gi|269128895|ref|YP_003302265.1| NADH/Ubiquinone/plastoquinone (complex I) [Thermomonospora curvata
DSM 43183]
gi|268313853|gb|ACZ00228.1| NADH/Ubiquinone/plastoquinone (complex I) [Thermomonospora curvata
DSM 43183]
Length=572
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 234/433 (55%), Positives = 301/433 (70%), Gaps = 13/433 (3%)
Query 13 LAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVML 72
LAA++ +L GWR L ALS+ VLAC +A+ + GL RADAL+ ML
Sbjct 13 LAAAVYAL-AGWRGPVRWLGALSSAGVLACGIALSLQQAPPSAPGL----RADALSSFML 67
Query 73 VVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWV 132
+VIG V TLA A Y+ E R+AR YGVLT F+ AM LAV A N+GV+WV
Sbjct 68 IVIGAVATLAMLAGPSYLAAEDDA-----RAARRYGVLTQGFIAAMALAVLAANLGVLWV 122
Query 133 AIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGA 192
A+EATT++TAFLVGHRRTR A+EA WKYVV+CS GIA+A LG VLL+FAA +G +
Sbjct 123 AVEATTIVTAFLVGHRRTRAAVEAAWKYVVVCSAGIALALLGVVLLHFAAAQAGVES--- 179
Query 193 LNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGV 252
L LD+LA HAA LDPGVAR+A LLL+G+G KAGL P H WL DAHSQAPAPVSALMSGV
Sbjct 180 LELDVLAAHAADLDPGVARIAVALLLLGFGTKAGLAPMHAWLPDAHSQAPAPVSALMSGV 239
Query 253 LLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSME 312
LL+VAF ++R++ I D GPA+ RN LLV+ L +LLVA L+L D KRMLAYSS+E
Sbjct 240 LLSVAFYAMLRVKVIADPALGPAFTRNLLLVLALLSLLVAALLLIAQRDYKRMLAYSSIE 299
Query 313 HMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRS 372
HMGL+A+ AAAG LA+ A+LLHVL HG+GK+VLF+ G + A S+ +A + G++ RS
Sbjct 300 HMGLLALGAAAGGRLALTAVLLHVLGHGLGKSVLFIGSGTILHATGSSRVAAVRGLLARS 359
Query 373 RLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAIGFTALARNS 432
L+G +F + L+ LLGLPPF++FASEL I R+ + + W + AL+L+ + A+ R
Sbjct 360 PLLGGAFGLALLALLGLPPFSLFASELGIFRAGFQDGIGWAVAVALVLLLVIVAAVGRIG 419
Query 433 GRMLLGTPAAGAP 445
RM+LG+P + P
Sbjct 420 SRMILGSPLSAQP 432
>gi|325578548|ref|ZP_08148648.1| hydrogenase-4 component F [Haemophilus parainfluenzae ATCC 33392]
gi|325159784|gb|EGC71914.1| hydrogenase-4 component F [Haemophilus parainfluenzae ATCC 33392]
Length=512
Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/480 (39%), Positives = 275/480 (58%), Gaps = 7/480 (1%)
Query 5 LLAAILAPLAASIASLITGWRRTTATLTALSAT-TVLACAVAMGFWMG---SGAQFGLGG 60
++A ++APLA S+AS G + TAL T +L A A+ G G L
Sbjct 6 IIALLIAPLAISLASFACGVTKARTICTALHVTGLILMLAFALQIINGVLTQGEISALNN 65
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRS-ARLYGVLTPAFLCAMV 119
+ D+L+ + L +I IVGTLA SIGYI TE GH+D ++ YG L F M+
Sbjct 66 WVYIDSLSAIFLGLIAIVGTLAGIYSIGYISTEYREGHLDLKTYCNYYGFLH-LFFFTMI 124
Query 120 LAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLY 179
++V NN+ ++W AIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L +
Sbjct 125 ISVITNNVILMWAAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTILTF 184
Query 180 FAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHS 239
+ A + A+ + + AAGL+P + LA +L+G+G K GLFP HTWL+DAHS
Sbjct 185 SNGTNLLADPSQAIFWTEINQQAAGLNPMLMYLAFAFILVGFGTKCGLFPMHTWLSDAHS 244
Query 240 QAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVT 299
+AP+PVSA++S VLL A SV++R ++ G Y + LLV GL ++LVA L + V
Sbjct 245 EAPSPVSAILSAVLLNCAMSVVLRYYILVSKAVGSTYPQTLLLVFGLLSVLVAALFIIVQ 304
Query 300 GDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDS 359
D+KR+LAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + + +
Sbjct 305 FDIKRLLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKYKT 364
Query 360 TAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALL 419
+ + G+ R + + V FA G + L G+PPF +F SE +IA + W++ L+
Sbjct 365 RDMNQVRGLWRVAPMTAVLFAGGALALGGIPPFNVFVSEFSIAVAGIYAGKTWLMVFCLI 424
Query 420 LIAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGI-TAGPLADLL 478
L+ I L+ + +LG V + A+ + ++ +GI A P+ LL
Sbjct 425 LLTIVLAGLSLMVLKTVLGKQPDNVEVGDVNKVSLVAMAILLLFMFIMGIHIAEPILQLL 484
>gi|258593563|emb|CBE69904.1| Hydrogenase-4 component F [NC10 bacterium 'Dutch sediment']
Length=485
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 169/385 (44%), Positives = 237/385 (62%), Gaps = 8/385 (2%)
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
+GGLLRAD L+ +M+VVI +VG +A IGYI E H+ R + L F+
Sbjct 56 VGGLLRADGLSALMVVVITLVGAIAALYGIGYIRAEYDDTHLT--RVRSFFALFHVFIFT 113
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M+LAV +N+G++WVAIE TT+ TAFLV T +LEA +KY+++ SVGIA+AF+GT L
Sbjct 114 MLLAVTTDNLGIMWVAIEGTTLATAFLVNLHNTPKSLEAAYKYLILSSVGIALAFIGTAL 173
Query 178 LYFAARDSGAAAAG--ALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLA 235
+Y+A GA+ AG A+N L A+ L+P V RLA +LIGYG KAGL P HTWL
Sbjct 174 MYYA----GASRAGEIAVNWTSLRAAASSLNPQVVRLAFAFILIGYGTKAGLAPMHTWLP 229
Query 236 DAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLM 295
DAHS+APAP+SALMSGVLL V ++R + + D G + LL +GL +L VA +
Sbjct 230 DAHSEAPAPISALMSGVLLNVGLYAVMRFKVVTDIAVGAHFAGPWLLGIGLLSLTVAAIF 289
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
L V + KRMLAYSS+EH+G+I + G + LLHV+ H + K++LF+ G +
Sbjct 290 LIVPRNYKRMLAYSSVEHVGVICLGLGFGGYWGVLGALLHVINHALSKSLLFILSGNILL 349
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
+ +T + + G++R S L +FA G + LLGLPPF +F SE I R+ WV+
Sbjct 350 KYQTTDLRRVRGLLRASPLTAGAFAAGTLALLGLPPFGLFISEFLIFRAGVESGPLWVVI 409
Query 416 AALLLIAIGFTALARNSGRMLLGTP 440
+ L+A+ F + + +ML G P
Sbjct 410 LGVALLAVIFAGMLGSVNQMLYGAP 434
>gi|338812157|ref|ZP_08624346.1| NADH dehydrogenase (quinone) [Acetonema longum DSM 6540]
gi|337275813|gb|EGO64261.1| NADH dehydrogenase (quinone) [Acetonema longum DSM 6540]
Length=524
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/394 (42%), Positives = 233/394 (60%), Gaps = 10/394 (2%)
Query 60 GLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMV 119
G+ DAL ML+VIG + A S+ Y+ EL HGH+ R Y L F+ M+
Sbjct 94 GMFYLDALNATMLLVIGTLSFTAAWFSLSYMRRELEHGHLSARMLSRYYALLQLFIFTML 153
Query 120 LAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLY 179
+ + N+G+IWVA+EATT+ +A LV R+ALEA WKYV++C+VGI +A LGT+LLY
Sbjct 154 VVLMVENLGLIWVAVEATTLASALLVAFYFNRSALEAAWKYVMVCTVGICLALLGTILLY 213
Query 180 FAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHS 239
+ ++ AL+ L +HA LDPG+ +L+ LL+GYG KAGL P HTWL DAHS
Sbjct 214 YTQVNAVGGGDHALSWLSLRDHADLLDPGLIKLSFVFLLVGYGTKAGLAPMHTWLPDAHS 273
Query 240 QAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVT 299
QAP+PVS L+SG LL+ A LIR I+ GP + + LL G+ ++ V++ + V
Sbjct 274 QAPSPVSGLLSGALLSCALYALIRNMIIVQGALGPLFGQQLLLAFGVISVAVSIPFVLVQ 333
Query 300 GDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDS 359
D+KR+LAYSS+EHMGL+A+ GT LAI L HVL H + K+ LF G + + +
Sbjct 334 HDLKRLLAYSSVEHMGLVALGLGIGTPLAIFGALFHVLNHALAKSSLFYLAGMITQGYHT 393
Query 360 TAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALL 419
I I+G++R + G F +GL+ + G PPF +F S+ I R+ A E LG+++L
Sbjct 394 KYIMRISGLVREMPVTGWMFVLGLLAITGTPPFGVFTSKFVILRA-AFESGNIFLGSSVL 452
Query 420 LIAIG-FTALARNSGRMLLG--------TPAAGA 444
++ + F + RM G PAAG+
Sbjct 453 VLLVAVFAGMIYYCLRMAFGQVTYKHHVQPAAGS 486
>gi|343518711|ref|ZP_08755701.1| hydrogenase 4 subunit F [Haemophilus pittmaniae HK 85]
gi|343393626|gb|EGV06181.1| hydrogenase 4 subunit F [Haemophilus pittmaniae HK 85]
Length=512
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/479 (37%), Positives = 263/479 (55%), Gaps = 5/479 (1%)
Query 5 LLAAILAPLAASIASLITGWRRTTATLTALSAT-TVLACAVAMGFWMGSGAQFGLGGL-- 61
++A ++APLA ++ + + +TAL T VL A+ G AQ + L
Sbjct 6 IIALLIAPLAVALINFAVSGSKNRNLITALHVTGLVLMVIFALQVIRGVLAQNTIEALNH 65
Query 62 -LRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
D+L+ + L +I IVGTLA SIGY++TEL GHID ++ Y F M+L
Sbjct 66 WFYVDSLSAIFLGLIAIVGTLAGVYSIGYMNTELKEGHIDFKTFGRYHGFLHLFFFTMLL 125
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
+V NNI ++W AIEATT+ +AFLVG + +TALEA WKY+VICSVG+A GT+L +
Sbjct 126 SVMTNNIILMWAAIEATTLSSAFLVGTYKQKTALEAAWKYIVICSVGVAFGLYGTILTFS 185
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
+ A A A+ L AAGL+P + +A +L+G+G K GLFP HTWL DAHS+
Sbjct 186 GGANLLADAGDAIFWSFLNSQAAGLNPMLMYIAFAFILVGFGTKCGLFPMHTWLPDAHSE 245
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
AP+PVSA++S VLL A +++R ++ G Y + LL GL + +A + +
Sbjct 246 APSPVSAILSAVLLNCAMLIVLRYYILVSKAVGSDYPQTLLLTFGLLSTGIASFFIIMQH 305
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KR LAY S+E+MGLI+ A G + A LLH + H + K +LF A G + + S
Sbjct 306 DIKRKLAYHSIENMGLISFAFGLGGPIGAFAGLLHTITHSLAKALLFCASGNILLKYRSR 365
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
I ++G+ + V FA G + L G+PPF MF SE AIA + W++ L+
Sbjct 366 DITQVSGLWVSMPITAVLFAGGALALGGMPPFGMFTSEFAIAVAGIYAGKTWLIILCLIF 425
Query 421 IAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGIT-AGPLADLL 478
+ I L + +LG P + ++ L + +++ +G+ A P+ +LL
Sbjct 426 LTIALAGLTTMLLKTVLGKPKENIELGEINKSSVTVLAIYLLLLFMMGVYIADPILELL 484
>gi|91202883|emb|CAJ72522.1| strongly similar to membrane-bound [NiFe]-hydrogenase-4, subunit
F [Candidatus Kuenenia stuttgartiensis]
Length=491
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/394 (38%), Positives = 219/394 (56%), Gaps = 3/394 (0%)
Query 56 FGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFL 115
+GL DAL+++ +I IVG A S+GY++ E+ G + + RLY L F+
Sbjct 55 YGLNEFFYMDALSILTTQIITIVGFAAALYSVGYMEEEVREGVVTEKKLRLYYFLFHMFI 114
Query 116 CAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGT 175
+M+L NN+G++WVAIEATT+ T FLVG + EA WKY+VIC+VGI +A G
Sbjct 115 FSMLLVCVTNNLGIMWVAIEATTLSTTFLVGFYNKKQHQEAAWKYIVICTVGITLALFGV 174
Query 176 VLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLA 235
+L Y++++ LN L A DP + +LA +LIGYG KAGL P HTWL
Sbjct 175 ILTYYSSKSVFGEIGHMLNWTSLLTVADRFDPHLIKLAFIFILIGYGTKAGLAPMHTWLP 234
Query 236 DAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLM 295
DAHSQAP+P+SAL SGVLL + +IR I GP Y L+V GL +++ ++
Sbjct 235 DAHSQAPSPISALFSGVLLNCSLYGIIRYHIITSKCVGPHYSCTLLMVFGLISVIASIPF 294
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
+ V D KR+ AYSS+EH+G I + G ++ LH H + K++LF G L
Sbjct 295 ILVQRDYKRLFAYSSIEHIGFITLGIGFGGMYSVYGAELHTFNHAVAKSLLFFCAGNLFL 354
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASE-LAIARSLANERLAWVL 414
+ + + I GV++ + + GV + + + G PPF +F SE L +A ++ + ++
Sbjct 355 KYKTRDMDSIKGVIKTTPVTGVFLIIAVFAITGTPPFGIFVSEFLVLADGFSSGNVFIII 414
Query 415 GAALLLIAIG--FTALARNSGRMLLGTPAAGAPA 446
++LL++ I F N +M+LG P P
Sbjct 415 FSSLLVVCITLIFIGFINNIFKMVLGEPTTSVPK 448
>gi|260913687|ref|ZP_05920163.1| hydrogenase subunit [Pasteurella dagmatis ATCC 43325]
gi|260632226|gb|EEX50401.1| hydrogenase subunit [Pasteurella dagmatis ATCC 43325]
Length=508
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/352 (43%), Positives = 214/352 (61%), Gaps = 0/352 (0%)
Query 50 MGSGAQFGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGV 109
+ GA G D+L+ + + +IGIVG LA SIGY+ EL G + + Y
Sbjct 52 LSQGALSTEGHWFYVDSLSAIFVGIIGIVGLLAGLYSIGYMKKELELGEFNEQQYGNYYG 111
Query 110 LTPAFLCAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIA 169
F M+L+V NNI V+WV IEATT+ +AFLVG RT+LEA WKY++ICSVG+A
Sbjct 112 FFHLFFFTMLLSVMTNNIVVMWVGIEATTLSSAFLVGAYGKRTSLEAAWKYIIICSVGVA 171
Query 170 VAFLGTVLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFP 229
GT+L++ A + A A+ + E+A LDP + LA +LIG+G K GLFP
Sbjct 172 FGLYGTLLVFADASNILADPEQAIFWTKINENATALDPHLIHLAFIFILIGFGTKCGLFP 231
Query 230 FHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATL 289
HTWL DAHS+AP+PVSA++SG+LL A V++R + + GP + +N LL+ G+ ++
Sbjct 232 MHTWLPDAHSEAPSPVSAILSGILLNCAMLVVLRYYILTNKAVGPEFAQNLLLIFGIISV 291
Query 290 LVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLA 349
+A L + D+KR+LAYSS+E+MGLIA+ G L + A LLH + H + KT+LF A
Sbjct 292 AIAALFIIAQRDIKRLLAYSSIENMGLIAVGFGIGGPLGVFAGLLHTINHSLAKTLLFCA 351
Query 350 GGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAI 401
G + + S + DI G+ + + V FA G + L G+PPF +F SELA+
Sbjct 352 SGNILVKYHSRDMQDIKGLWKTMPITAVLFAGGALALSGVPPFNLFISELAL 403
>gi|251792880|ref|YP_003007606.1| hydrogenase-4 subunit F [Aggregatibacter aphrophilus NJ8700]
gi|247534273|gb|ACS97519.1| hydrogenase-4 component F [Aggregatibacter aphrophilus NJ8700]
Length=512
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/444 (38%), Positives = 247/444 (56%), Gaps = 6/444 (1%)
Query 5 LLAAILAPLAASIASLITGWRRTTATLTALSAT-TVLACAVAMGFWMG---SGAQFGLGG 60
++A ++APLA S+AS +T TAL T +L A ++ G G LG
Sbjct 6 IIALLIAPLAISLASFACSVTKTRTICTALHVTGLILMFAFSLQVITGVLTQGEISSLGN 65
Query 61 LLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRS-ARLYGVLTPAFLCAMV 119
+ D+L+ + L +I +VG LA SI YI+ E GHID ++ YG L F M+
Sbjct 66 WIHVDSLSAIFLALISVVGGLAGVYSIAYINREFNEGHIDLKTYCNYYGFLH-LFFFTMI 124
Query 120 LAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLY 179
L+V NN+ ++W IEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L +
Sbjct 125 LSVTTNNLILMWAGIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLFGTILTF 184
Query 180 FAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHS 239
+ A + A+ + + A+ L G+ LA +L+G+G K GLFP HTWL DAHS
Sbjct 185 SNGTNLLADPSQAIFWTAVNQQASDLHHGLMYLAFAFILVGFGTKCGLFPMHTWLPDAHS 244
Query 240 QAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVT 299
+AP+PVSA++S VLL A V++R ++ G Y + +LV GL + VA + +
Sbjct 245 EAPSPVSAVLSAVLLNCAMLVVLRYYILVSKAVGSDYPQTLMLVFGLLSTGVASFFIIMQ 304
Query 300 GDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDS 359
D+KR LAY S+E+MGLI+ A G + A LLH + H + K +LF A G + + S
Sbjct 305 HDIKRKLAYHSIENMGLISFAFGLGGPVGAFAGLLHTITHSLAKALLFCASGNILLKYRS 364
Query 360 TAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALL 419
I +++G+ R V FA G + L G+PPF MF SE AIA + W++ L+
Sbjct 365 RDIHEVSGLWRTMPFTAVLFAGGALALGGMPPFGMFTSEFAIAVAGIYAGKTWLIVLCLI 424
Query 420 LIAIGFTALARNSGRMLLGTPAAG 443
+ I L + +LG P G
Sbjct 425 FLTIALAGLTTMLLKTVLGKPKEG 448
>gi|293392058|ref|ZP_06636392.1| hydrogenase-4 component F [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290952592|gb|EFE02711.1| hydrogenase-4 component F [Aggregatibacter actinomycetemcomitans
D7S-1]
Length=512
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/439 (40%), Positives = 256/439 (59%), Gaps = 4/439 (0%)
Query 5 LLAAILAPLAASIASLITGWRRTTATLTALSAT-TVLACAVAMGFWMGSGAQFGLGGL-- 61
++A + APLA ++A + TAL T +L A+ G Q + L
Sbjct 6 IIALLTAPLAVALACFACRSTKNRTICTALHVTGLILMVGFALQIINGVLTQSDISALNN 65
Query 62 -LRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVL 120
+ D+L+ + L +I +VGTLA SIGYI TEL GH++ + Y F M++
Sbjct 66 WVYIDSLSAIFLGLIAVVGTLAGIYSIGYIGTELQEGHLNLKDFCNYHGFLHLFFFTMII 125
Query 121 AVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYF 180
+V NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L +
Sbjct 126 SVITNNVILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTILTFA 185
Query 181 AARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQ 240
+ A + A+ L + AAGL+P + +A +LIG+G K GLFP HTWL+DAHS+
Sbjct 186 NGNNLLADPSQAIFWSALNQQAAGLNPMLMYIAFAFILIGFGTKCGLFPMHTWLSDAHSE 245
Query 241 APAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTG 300
AP+PVSA++S VLL A V++R ++ G AY + LLV GL ++LVA L + V
Sbjct 246 APSPVSAILSAVLLNCAMLVVLRYYILVSKAVGSAYPQTLLLVFGLLSVLVAALFIIVQF 305
Query 301 DVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDST 360
D+KR+LAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + + +
Sbjct 306 DIKRLLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKYKTR 365
Query 361 AIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLL 420
+ + G+ R + + V FA G + L GLPPF +F SE +IA + W++ L+L
Sbjct 366 DMNQVRGLWRVAPVSAVLFAGGALALGGLPPFNVFVSEFSIAVAGIYAGKTWLVIFCLIL 425
Query 421 IAIGFTALARNSGRMLLGT 439
+ I LA + +LG
Sbjct 426 LTIVLAGLALMILKTVLGK 444
>gi|261868402|ref|YP_003256324.1| hydrogenase-4 subunit F [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413734|gb|ACX83105.1| hydrogenase-4 component F [Aggregatibacter actinomycetemcomitans
D11S-1]
Length=512
Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 171/442 (39%), Positives = 256/442 (58%), Gaps = 10/442 (2%)
Query 5 LLAAILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMG-------SGAQFG 57
++A + APLA ++A R+T T +A V + +GF + G
Sbjct 6 IIALLTAPLAVALACFAC---RSTKNRTICTALHVTGLILMVGFALQIINGVLTQGDISA 62
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
L + D+L+ + L +I +VGTLA SIGYI TEL GH+ + Y F
Sbjct 63 LNNWVYIDSLSAIFLGLIAVVGTLAGVYSIGYIGTELQEGHLSLKDFYNYHGFLHLFFFT 122
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M+++V NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L
Sbjct 123 MIISVITNNVILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTIL 182
Query 178 LYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADA 237
+ + A + A+ L + AAGL+P + +A +LIG+G K GLFP HTWL+DA
Sbjct 183 TFANGNNLLADPSQAIFWSALNQQAAGLNPMLMYIAFVFILIGFGTKCGLFPMHTWLSDA 242
Query 238 HSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLT 297
HS+AP+PVSA++S VLL A V++R ++ G +Y + LLV GL ++LVA L +
Sbjct 243 HSEAPSPVSAILSAVLLNCAMLVVLRYYILVSKAVGSSYPQTLLLVFGLLSVLVAALFII 302
Query 298 VTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAH 357
V D+KR+LAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + +
Sbjct 303 VQFDIKRLLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKY 362
Query 358 DSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAA 417
+ + + G+ R + + V FA G + L GLPPF +F SE +IA + W++
Sbjct 363 KTRDMNQVRGLWRVAPVSAVLFAGGALALGGLPPFNVFVSEFSIAVAGIYAGKTWLVIFC 422
Query 418 LLLIAIGFTALARNSGRMLLGT 439
L+L+ I LA + +LG
Sbjct 423 LILLTIVLAGLALMIMKTVLGK 444
>gi|345430346|ref|YP_004823467.1| hydrogenase 4, membrane subunit [Haemophilus parainfluenzae T3T1]
gi|301156410|emb|CBW15881.1| hydrogenase 4, membrane subunit [Haemophilus parainfluenzae T3T1]
Length=512
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/445 (38%), Positives = 245/445 (56%), Gaps = 8/445 (1%)
Query 5 LLAAILAPLAASIASLITGWRRTTATLTALSAT-----TVLACAVAMGFWMGSGAQFGLG 59
++A ++APLA S+AS G + TAL T V + V G + G G
Sbjct 6 IIALLIAPLAISLASFACGVTKARTICTALHVTGLILMFVFSLQVITGV-LTQGEINCFG 64
Query 60 GLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRS-ARLYGVLTPAFLCAM 118
+ D+L+ + L +I +VG LA SI YI+ E GH+D ++ YG L F M
Sbjct 65 NWIHVDSLSAIFLALISVVGGLAGVYSIAYINREFNEGHVDLKTYCNYYGFLH-LFFFTM 123
Query 119 VLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLL 178
+L+V NN+ ++W IEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L
Sbjct 124 ILSVTTNNLILMWAGIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLFGTILT 183
Query 179 YFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAH 238
+ + A + A+ + + A L+ G+ LA +L+G+G K GLFP HTWL DAH
Sbjct 184 FSNGTNLLADPSQAIFWTAVNQQAGELNHGLMYLAFAFILVGFGTKCGLFPMHTWLPDAH 243
Query 239 SQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTV 298
S+AP+PVSA++S VLL A V++R ++ G Y + +LV GL + +A + +
Sbjct 244 SEAPSPVSAVLSAVLLNCAMLVVLRYYILVSKAVGADYPQTLMLVFGLLSTGIASFFIIM 303
Query 299 TGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHD 358
D+KR LAY S+E+MGLI+ A G + A LLH + H + K +LF A G + +
Sbjct 304 QHDIKRKLAYHSIENMGLISFAFGLGGPVGAFAGLLHTITHSLAKALLFCASGNILLKYR 363
Query 359 STAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAAL 418
S I +++G+ R V FA G + L G+PPF MF SE AIA + W++ L
Sbjct 364 SRDIHEVSGLWRTMPFTAVLFAGGALALGGMPPFGMFTSEFAIAVAGIYAGKTWLIVLCL 423
Query 419 LLIAIGFTALARNSGRMLLGTPAAG 443
+ + I L + +LG P G
Sbjct 424 IFLTIALAGLTTMLLKTVLGKPKEG 448
>gi|312110877|ref|YP_003989193.1| NADH/Ubiquinone/plastoquinone (complex I) [Geobacillus sp. Y4.1MC1]
gi|336235309|ref|YP_004587925.1| NADH dehydrogenase (quinone) [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215978|gb|ADP74582.1| NADH/Ubiquinone/plastoquinone (complex I) [Geobacillus sp. Y4.1MC1]
gi|335362164|gb|AEH47844.1| NADH dehydrogenase (quinone) [Geobacillus thermoglucosidasius
C56-YS93]
Length=495
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 219/390 (57%), Gaps = 0/390 (0%)
Query 56 FGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFL 115
F L G+L AD LT +++++IG++G L SIGY+ EL HG + + Y FL
Sbjct 61 FALDGMLFADELTAILILLIGVIGFLNGFYSIGYMRHELTHGEENEKGVCFYYGFYHIFL 120
Query 116 CAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGT 175
MV++ +NNI ++WVA+EATT+ +AFLVG + +T+ E WKYV+ICSVG+A A GT
Sbjct 121 FTMVISAISNNIAIMWVAVEATTLGSAFLVGFYKHKTSAEGAWKYVLICSVGLAFALYGT 180
Query 176 VLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLA 235
+L Y A S A A+ L LDP + +LA +LIG+G KAGLFP HTWL
Sbjct 181 ILTYSNAFSSVQDAHRAMLWTELVRMGQDLDPQLMKLAFVFVLIGFGTKAGLFPMHTWLP 240
Query 236 DAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLM 295
DAHS+AP+P SAL+SGVLL A ++R I V G + + LL+ GL T+ VA
Sbjct 241 DAHSEAPSPASALLSGVLLKCALFAIVRYYAIALQVVGKEFPNSLLLIFGLLTVGVAAFF 300
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
+ + D+KR LAYSS+EH+G+IA G L I A LLH + H I K++LF G +
Sbjct 301 ILMQNDIKRKLAYSSVEHVGIIATGLGIGGALGIFASLLHTINHSITKSLLFCTTGNIMM 360
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
+ + I G+++ + F G+I + G PPF +F SE + W +
Sbjct 361 KYGTRDANKIRGMLKVMPFTALMFMAGIIAVAGSPPFNIFVSEFTTLTAGLKSGHFWAMI 420
Query 416 AALLLIAIGFTALARNSGRMLLGTPAAGAP 445
LL + I F AL + G P+ P
Sbjct 421 LFLLFLVIAFVALVLLISETVFGPPSEDLP 450
>gi|220929110|ref|YP_002506019.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium cellulolyticum
H10]
gi|219999438|gb|ACL76039.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium cellulolyticum
H10]
Length=495
Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 152/426 (36%), Positives = 239/426 (57%), Gaps = 6/426 (1%)
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
+ D+L+ +L + + L + SI Y EL + I R +LY L+ AF+ +
Sbjct 59 FKNIFYMDSLSGYILFITTLAFFLVSLYSISYFGQELKNKVITIRKLKLYYSLSNAFVLS 118
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M+LA+ N+GV+W++IEATT+ +AFLVG + A+EA WKY++ICSVGI A LG +L
Sbjct 119 MILALTTRNMGVMWISIEATTLASAFLVGFYNNKRAIEAAWKYLIICSVGITFALLGIIL 178
Query 178 LYFAAR-DSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLAD 236
L++++ G A ++ L ++A+ LDP + ++A +LIG+G K G P HTWL D
Sbjct 179 LFYSSTVKLGGARISGMDWSYLIKYASALDPSILKIAFIFILIGFGTKVGFSPMHTWLPD 238
Query 237 AHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPA-YLRNGLLVVGLATLLVAVLM 295
AHSQAP+PVSAL+SGVLL A +IR+ I++ G + Y N L+V+ + ++ A +
Sbjct 239 AHSQAPSPVSALLSGVLLNTAMYGVIRVMSIVNKCLGSSNYTGNLLIVLSVLSIGTAAVF 298
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
+ V D KR+LAYSS+EHMG+IA+ T ++I A L H H + K +LFLA G +
Sbjct 299 ILVQQDYKRILAYSSIEHMGIIALGLGVCTPISIFAALYHTFNHAMTKLMLFLATGNVYL 358
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
H + I+ I G+++ + G+ F +G + G+PPF +F SE + V
Sbjct 359 KHHTKKISSIRGLIKTMPVTGIVFVLGTFAITGMPPFGVFMSEFNTVVGTIFSKRYIVTA 418
Query 416 AALLLIAIGFTALARNSGRMLLG---TPAAGAPAITVPATAAAALMVGIVVSAALGITAG 472
L+ +++ F + G+M G P I + A +++ I V A + I
Sbjct 419 LLLIFLSMVFAGFTKQLGKMFYGNNSNPQIKKGEIDIIGPAVLIILLCITVLAGIYIPV- 477
Query 473 PLADLL 478
P +L+
Sbjct 478 PFKELM 483
>gi|147919459|ref|YP_686801.1| hydrogenase, membrane subunit 1-like protein (EchA-like) [uncultured
methanogenic archaeon RC-I]
gi|110622197|emb|CAJ37475.1| hydrogenase, membrane subunit 1-like protein (EchA-like) [uncultured
methanogenic archaeon RC-I]
Length=487
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/435 (38%), Positives = 243/435 (56%), Gaps = 1/435 (0%)
Query 9 ILAPLAASIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALT 68
++ PL + + +RT ++ L A ++A V + + + + GGL D+L
Sbjct 7 LIIPLITAALCYLIKHKRTVEIVSTLGALAIMAGCVYLAYTVFTRGPVS-GGLWYVDSLG 65
Query 69 VVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIG 128
MLV+I +G A SIGY+ E ID R Y F+ M+L ++N+G
Sbjct 66 AYMLVIISFIGLAAAIYSIGYLGYEYKEKKIDLGRLRYYFTFFHVFIFTMLLVCTSSNLG 125
Query 129 VIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAA 188
++W+AIEATT+ +AFLVG T++EA WKY++ICSVGI +A LGT+LLY ++ ++
Sbjct 126 IMWIAIEATTLASAFLVGFYNKDTSVEAAWKYIIICSVGITLALLGTILLYASSVNTLGE 185
Query 189 AAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSAL 248
+A ALN +LAE A LDP + ++A L++IGYG KAG P HTWL DAHS+AP P+S L
Sbjct 186 SADALNWPMLAEKAKSLDPTLLKIAFILVIIGYGTKAGFAPMHTWLPDAHSEAPTPISGL 245
Query 249 MSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAY 308
+SGVLL A ++R I GP + L+V GL +L A + + D KR+LAY
Sbjct 246 LSGVLLNCAMYGILRYHIITTNALGPDFSGTLLIVFGLLSLAAAAAFIIIQKDYKRLLAY 305
Query 309 SSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGV 368
SS+EHMG+IAI G + I LLH+L H + K+++F G + + I ++ G+
Sbjct 306 SSIEHMGIIAIGFGIGGAVGIFGALLHILNHAVTKSLMFFGAGNILLKFKTKNIDEVKGI 365
Query 369 MRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAIGFTAL 428
+ F G + + G PPF++F SE+ I + + V LLL+ I F
Sbjct 366 AALMPWTAMCFVAGALAITGSPPFSIFVSEIIILIAGFTQGNIVVSVLYLLLLVIIFAGF 425
Query 429 ARNSGRMLLGTPAAG 443
+ GRM+ G PA G
Sbjct 426 MYHVGRMVFGEPAPG 440
>gi|341948990|gb|EGT75605.1| hydrogenase-4 component F [Haemophilus haemolyticus M19501]
Length=512
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 160/430 (38%), Positives = 252/430 (59%), Gaps = 1/430 (0%)
Query 50 MGSGAQFGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGV 109
+ G+ + D+L+ + L +I +VG+LA SIGY++TEL GHID ++ Y
Sbjct 55 LEKGSVSAFNNWVYVDSLSAIFLGLIAVVGSLAGVYSIGYMNTELEEGHIDFKTYAHYHG 114
Query 110 LTPAFLCAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIA 169
F M+++V NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A
Sbjct 115 FLHLFFFTMIVSVITNNLILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVA 174
Query 170 VAFLGTVLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFP 229
GT+L + A A + A+ + + A GL+P + +A +LIG+G K GLFP
Sbjct 175 FGLYGTLLTFANANGVLADPSQAIFWSAVNQQATGLNPMLMYIAFAFVLIGFGTKCGLFP 234
Query 230 FHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATL 289
HTWL+DAHS+AP+PVSA++S VLL A V++R ++ G + + +L+ GL ++
Sbjct 235 MHTWLSDAHSEAPSPVSAILSAVLLNCAMLVVLRYYTLVSKAVGAEFPQTLMLIFGLLSV 294
Query 290 LVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLA 349
LVA L + V D+KR+LAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A
Sbjct 295 LVAALFIIVQFDIKRLLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLVKTLLFCA 354
Query 350 GGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANER 409
G + + + + + G+ R + + V FA G + L G+PPF +F SE ++ +
Sbjct 355 SGNILLKYKTRDMNQVRGLWRVAPVSAVLFAGGALALGGIPPFNVFVSEFSVVVAGITAG 414
Query 410 LAWVLGAALLLIAIGFTALARNSGRMLLGTPAAGAPAITVPATAAAALMVGIVVSAALGI 469
W++ L+L+ I LA + +LG A V + AA+ + +++ +GI
Sbjct 415 KTWLVILCLILLTIVLAGLALMLLKTVLGKQPDNVEAGEVSKVSLAAMTILLLLMFVMGI 474
Query 470 -TAGPLADLL 478
A P+ LL
Sbjct 475 HIAEPILQLL 484
>gi|341956341|gb|EGT82771.1| hydrogenase-4 component F [Haemophilus haemolyticus M21639]
Length=512
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/393 (39%), Positives = 235/393 (60%), Gaps = 6/393 (1%)
Query 5 LLAAILAPLAASIASL-ITGWR-RTTAT---LTALSATTVLACAVAMGFWMGSGAQFGLG 59
++A ++APL + S + G + RT T +T L + V G + G+
Sbjct 6 IIALLIAPLVIAFESFALRGTKNRTVCTAFHITGLILMLFFSVQVISGV-LEKGSISAFN 64
Query 60 GLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMV 119
+ D+L+ + L +I +VG+LA SIGY++TEL GHID ++ Y F M+
Sbjct 65 NWVYVDSLSAIFLGLIAVVGSLAGVYSIGYMNTELEEGHIDFKTYAHYHGFLHLFFFTMI 124
Query 120 LAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLY 179
++V NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L +
Sbjct 125 VSVITNNLILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTLLTF 184
Query 180 FAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHS 239
A A + A+ + + A GL+P + +A +LIG+G K GLFP HTWL+DAHS
Sbjct 185 ANANGVLADPSQAIFWSAVNQQATGLNPMLMYIAFAFVLIGFGTKCGLFPMHTWLSDAHS 244
Query 240 QAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVT 299
+AP+PVSA++S VLL A V++R ++ G + + +L+ GL ++LVA L + V
Sbjct 245 EAPSPVSAILSAVLLNCAMLVVLRYYTLVSKAVGAEFSQTLMLIFGLLSVLVAALFIIVQ 304
Query 300 GDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDS 359
D+KRMLAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + + +
Sbjct 305 FDIKRMLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKYKT 364
Query 360 TAIADITGVMRRSRLIGVSFAVGLIVLLGLPPF 392
+ + G+ R + + V FA G + L G+PPF
Sbjct 365 RDMNQVRGLWRVAPVSAVLFAGGALALGGIPPF 397
>gi|341949807|gb|EGT76406.1| hydrogenase-4 component F [Haemophilus haemolyticus M21127]
Length=512
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/328 (43%), Positives = 209/328 (64%), Gaps = 0/328 (0%)
Query 65 DALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCA 124
D+L+ + L +I +VG+LA SIGY++TEL GHID ++ Y F M+++V
Sbjct 70 DSLSAIFLGLIAVVGSLAGVYSIGYMNTELEEGHIDFKTYAHYHGFLHLFFFTMIVSVIT 129
Query 125 NNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARD 184
NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L + A
Sbjct 130 NNLILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTLLTFANANG 189
Query 185 SGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAP 244
A + A+ + + A GL+P + +A +LIG+G K GLFP HTWL+DAHS+AP+P
Sbjct 190 VLADPSQAIFWSAVNQQATGLNPMLMYIAFAFVLIGFGTKCGLFPMHTWLSDAHSEAPSP 249
Query 245 VSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKR 304
VSA++S VLL A V++R ++ G + + +L+ GL ++LVA L + V D+KR
Sbjct 250 VSAILSAVLLNCAMLVVLRYYTLVSKAVGAEFPQTLMLIFGLLSVLVAALFIIVQFDIKR 309
Query 305 MLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIAD 364
MLAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + + + +
Sbjct 310 MLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKYKTRDMNQ 369
Query 365 ITGVMRRSRLIGVSFAVGLIVLLGLPPF 392
+ G+ R + + V FA G + L G+PPF
Sbjct 370 VRGLWRVAPVSAVLFAGGALALGGIPPF 397
>gi|238749932|ref|ZP_04611436.1| Hydrogenase-4 component F [Yersinia rohdei ATCC 43380]
gi|238711861|gb|EEQ04075.1| Hydrogenase-4 component F [Yersinia rohdei ATCC 43380]
Length=545
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/384 (40%), Positives = 222/384 (58%), Gaps = 5/384 (1%)
Query 18 ASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVMLVVIGI 77
A + T W T L + C VA+G G L D+L+ + L ++GI
Sbjct 31 ARMATTWVHFTGITLLLVVALTVVCRVALG-----GDILAAHNWLHIDSLSALFLAILGI 85
Query 78 VGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAIEAT 137
+G + S+GY+ E+ +G I + Y FL M+L V +NN+ ++WV IEAT
Sbjct 86 IGFITGLYSLGYMRHEVNNGEITVSTLCNYYGFFHLFLFTMLLVVTSNNLILMWVGIEAT 145
Query 138 TVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALNLDI 197
T+ +AFLVG R++LEA WKY++IC+VG+A GTVL+Y A + + A+ +
Sbjct 146 TLSSAFLVGLYGQRSSLEAAWKYIIICTVGVAFGLYGTVLVYANAANVLSDPGSAIFWTV 205
Query 198 LAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLLAVA 257
+AEHA LDP + LA +LIG+G K GLFP H+WL DAHS+AP+P SAL+S VLL A
Sbjct 206 VAEHAKELDPTLMHLAFVFILIGFGTKTGLFPMHSWLPDAHSEAPSPTSALLSAVLLNCA 265
Query 258 FSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHMGLI 317
V+IR I+ A GP + + LLV G+ ++ V+ + D+KR+LAYSS+E+MGLI
Sbjct 266 LLVIIRYYIIISAAIGPHFPQMLLLVFGMMSVAVSAFFILAQRDMKRLLAYSSVENMGLI 325
Query 318 AIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRLIGV 377
A+A G L + A L H L H + KT+LF G + + + + I G++R + L V
Sbjct 326 AVALGIGGPLGVLAALFHTLNHSLAKTLLFCGSGNVLLKYGTRDMGAIKGIIRVAPLTAV 385
Query 378 SFAVGLIVLLGLPPFAMFASELAI 401
FA G + L G+PPF +F SE +
Sbjct 386 MFAGGALALAGMPPFNVFISEFMV 409
>gi|326202173|ref|ZP_08192043.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium papyrosolvens
DSM 2782]
gi|325987968|gb|EGD48794.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium papyrosolvens
DSM 2782]
Length=495
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/383 (39%), Positives = 223/383 (59%), Gaps = 2/383 (0%)
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
L D+L+ +L + + L + SI Y EL I +LY L+ AF+ +
Sbjct 59 FKNLFYMDSLSGYILFITTLAFFLVSLYSISYFGQELKKKVITIGKLKLYYSLSNAFVLS 118
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M+LA+ N+GV+W++IEATT+ +AFLVG + A+EA WKY++ICSVGIA A LG +L
Sbjct 119 MILALTTRNMGVMWISIEATTLASAFLVGFYNNKRAIEAAWKYLIICSVGIAFALLGIIL 178
Query 178 LYFAAR-DSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLAD 236
L++++ G A L+ L ++AA LDP + ++A +LIG+G K G P HTWL D
Sbjct 179 LFYSSTVKLGGARISGLDWSYLIKYAAALDPSILKIAFIFILIGFGTKVGFSPMHTWLPD 238
Query 237 AHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPA-YLRNGLLVVGLATLLVAVLM 295
AHSQAP+PVSAL+SGVLL A +IR+ I++ G + Y N L+V+ + ++ A +
Sbjct 239 AHSQAPSPVSALLSGVLLNTAMYGVIRVMSIVNKCLGSSNYTGNLLIVLSVLSIGTAAVF 298
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
+ V D KR+LAYSS+EHMG+IA+ T ++I A L H+ H + K +LFLA G +
Sbjct 299 ILVQQDYKRILAYSSIEHMGIIALGLGICTPVSIFAALYHIFNHAMTKLMLFLATGNVYL 358
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
H + I+ I G+++ + G+ F +G + G+PPF +F SE + V
Sbjct 359 KHHTKKISSIHGLIKTMPVTGIVFVLGTFAITGMPPFGVFMSEFNTVVGALFAKKYLVTA 418
Query 416 AALLLIAIGFTALARNSGRMLLG 438
L+ +++ F + G+M G
Sbjct 419 LLLIFLSMVFAGFTKQLGKMFYG 441
>gi|83591011|ref|YP_431020.1| hydrogenase 4 subunit F [Moorella thermoacetica ATCC 39073]
gi|83573925|gb|ABC20477.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
Length=495
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/388 (40%), Positives = 222/388 (58%), Gaps = 0/388 (0%)
Query 56 FGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFL 115
F L +L AD+LT +++++IG++G L SIGY+ +L HG D RS Y FL
Sbjct 61 FALNQMLYADSLTAILVLIIGVLGFLDGFYSIGYLRHDLEHGEADERSVCSYYGFFHIFL 120
Query 116 CAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGT 175
M+L+ +NNI ++W A+EATT+ +AFLVG + +T+ E WKYV+ICSVG+A A GT
Sbjct 121 FTMLLSAISNNIAIMWAAVEATTLGSAFLVGFYKYKTSAEGAWKYVLICSVGLAFALYGT 180
Query 176 VLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLA 235
+L Y A A A+ +A A LDP V +LA +L+G+G KAGLFP HTWL
Sbjct 181 ILTYSDAFTILQDAHRAMLWTEIAGMAHSLDPQVMKLAFVFILLGFGTKAGLFPMHTWLP 240
Query 236 DAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLM 295
DAHS+AP+P SA++SGVLL A +IR I V G ++ + LL+ GL ++ VA
Sbjct 241 DAHSEAPSPASAMLSGVLLKCALFAIIRYYAIALQVLGRSFPQTLLLIFGLLSVCVAAFF 300
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
+ V D+KR LAYSS+EH+G+I G L I A LLH + H I K++LF A G +
Sbjct 301 ILVQNDIKRKLAYSSVEHIGIITTGLGVGGALGIFAALLHAINHSITKSLLFCASGNVVI 360
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
+ + I G+++ + G+ F GL+ + G PP +F SE + W +
Sbjct 361 KYGTRDSQKIRGLLKVAPFTGLMFMAGLLTVAGSPPLNIFVSEFMTLTAGLKGGYLWPMI 420
Query 416 AALLLIAIGFTALARNSGRMLLGTPAAG 443
L+ + I F AL + G+P G
Sbjct 421 LLLIALVIVFAALVILISGSVFGSPPEG 448
>gi|325288317|ref|YP_004264498.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM
8271]
gi|324963718|gb|ADY54497.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM
8271]
Length=486
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/385 (39%), Positives = 224/385 (59%), Gaps = 6/385 (1%)
Query 58 LGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCA 117
LG + DAL+ ++ +I ++G L S+GY+ ++ I+ + Y F+
Sbjct 56 LGRYIYIDALSAFIISIISVIGLLTAIFSLGYLSKDVEEREIEAGRLKWYYFWFYIFIFT 115
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M V A N+G++WV+IEATT+ +A LVG +++LEA WKY++IC+VGI A GT+L
Sbjct 116 MFCVVMAGNMGIMWVSIEATTLASALLVGFYDKKSSLEAAWKYIIICTVGIIFALFGTIL 175
Query 178 LYFAARDSGAAAAGALNLDILA--EHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLA 235
L++AA + +L+LD L+ E+A LDP + +LA L+GYG KAGL P HTWL
Sbjct 176 LHYAAV---SVTGESLSLDWLSIVENAEKLDPKLLKLAFVFALVGYGTKAGLAPMHTWLP 232
Query 236 DAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLM 295
DAHSQAPAPVSA++SGVLL A ++R I G + + LL GL ++L+A+
Sbjct 233 DAHSQAPAPVSAILSGVLLNCALYGILRFHLIAVKPLG-MFSHDLLLFFGLISILIAMPF 291
Query 296 LTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQA 355
+ D+KR+LAYSS+EHMGLI A G+ A+ LH+L H K+ LF G +
Sbjct 292 IIAQHDLKRLLAYSSIEHMGLITFAVGIGSKPALYGAFLHMLNHAFTKSFLFFGAGNITQ 351
Query 356 AHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLG 415
S I I G ++ G++F +G + GLPPF++F SE I + + W G
Sbjct 352 YFRSKKIGKIKGAIKAMPRSGLAFFIGAFAIAGLPPFSIFLSEFIIFSAGFSAGRIWHSG 411
Query 416 AALLLIAIGFTALARNSGRMLLGTP 440
L+ +++ FT + +G+++LG P
Sbjct 412 LVLIFVSLIFTGIIYAAGKIVLGDP 436
>gi|342903801|ref|ZP_08725605.1| hydrogenase-4 component F [Haemophilus haemolyticus M21621]
gi|341954381|gb|EGT80865.1| hydrogenase-4 component F [Haemophilus haemolyticus M21621]
Length=512
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 138/328 (43%), Positives = 209/328 (64%), Gaps = 0/328 (0%)
Query 65 DALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCA 124
D+L+ + L +I +VG+LA SIGY++TEL GHID ++ Y F M+++V
Sbjct 70 DSLSAIFLGLIAVVGSLAGVYSIGYMNTELEEGHIDFKTYAHYHGFLHLFFFTMIVSVIT 129
Query 125 NNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARD 184
NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L + A
Sbjct 130 NNLILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTLLTFANANG 189
Query 185 SGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAP 244
A + A+ + + A GL+P + +A +LIG+G K GLFP HTWL+DAHS+AP+P
Sbjct 190 VLADPSQAIFWSAVNQQATGLNPMLMYIAFAFVLIGFGTKCGLFPMHTWLSDAHSEAPSP 249
Query 245 VSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKR 304
VSA++S VLL A V++R ++ G + + +L+ GL ++LVA L + V D+KR
Sbjct 250 VSAILSAVLLNCAMLVVLRYYTLVSKAVGAEFPQTLMLIFGLLSVLVAALFIIVQFDIKR 309
Query 305 MLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIAD 364
+LAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + + + +
Sbjct 310 LLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKYKTRDMNQ 369
Query 365 ITGVMRRSRLIGVSFAVGLIVLLGLPPF 392
+ G+ R + + V FA G + L G+PPF
Sbjct 370 VRGLWRVAPVSAVLFAGGALALGGIPPF 397
>gi|334341775|ref|YP_004546755.1| NADH/Ubiquinone/plastoquinone (complex I) [Desulfotomaculum ruminis
DSM 2154]
gi|334093129|gb|AEG61469.1| NADH/Ubiquinone/plastoquinone (complex I) [Desulfotomaculum ruminis
DSM 2154]
Length=493
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 160/387 (42%), Positives = 236/387 (61%), Gaps = 7/387 (1%)
Query 59 GGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHI-DGRSARLYGVLTPAFLCA 117
G LL D L+ V++ +IG+VGTL S+ Y+ T+L +G + + + R +G+L F+
Sbjct 57 GSLLVIDELSAVLVFIIGMVGTLCCLYSVQYLRTDLKNGELTENKIGRFFGLLH-FFIAT 115
Query 118 MVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVL 177
M L+V A+N+G++WVAIE TT+++A LV + ALEA WKY++IC+VGIA A LG +L
Sbjct 116 MYLSVLADNLGLMWVAIEGTTIVSALLVAFYGHKAALEAAWKYIIICTVGIAFAMLGIIL 175
Query 178 LYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADA 237
++AAR+ + +L+ L AA LDP V +LA +L+GYG KAGLFP HTWL DA
Sbjct 176 TFYAAREILGSGDISLSWRSLYPVAASLDPSVMKLAFIFVLVGYGTKAGLFPLHTWLPDA 235
Query 238 HSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLT 297
HSQAP+PVSAL+SGVLL A ++R + +G + + L++ GL ++ AV +
Sbjct 236 HSQAPSPVSALLSGVLLNCAIYAIVRFHLLTSLSAGSGFSGHLLMIFGLISMAAAVPFIL 295
Query 298 VTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAH 357
V D+KR+LAYSS+EH+G+I + G L +LH++ H + K+ LFL G L +
Sbjct 296 VQKDIKRLLAYSSVEHVGIIVLGLGLGGVLGYTGAILHLINHALAKSALFLTAGTLTQKY 355
Query 358 DSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIA-RSLANERLAWVLGA 416
+S IA I G+ + + G F L+ + G PPF +F SEL +A R + + +LG
Sbjct 356 NSKLIARIQGIGQLLPITGTLFMASLLAIGGAPPFGLFFSELTVATRGFHSAGV--LLGF 413
Query 417 ALLL-IAIGFTALARNSGRMLLG-TPA 441
L+ IAI F L G+M TP+
Sbjct 414 LFLMVIAIVFAGLVYFGGKMYFSDTPS 440
>gi|238793447|ref|ZP_04637072.1| Hydrogenase-4 component F [Yersinia intermedia ATCC 29909]
gi|238727220|gb|EEQ18749.1| Hydrogenase-4 component F [Yersinia intermedia ATCC 29909]
Length=543
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 168/428 (40%), Positives = 242/428 (57%), Gaps = 7/428 (1%)
Query 16 SIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVMLVVI 75
S A + T W T L + C VA+G G L D+L+ + L ++
Sbjct 29 SAARMATTWVHFTGITLLLVVALTVVCRVALG-----GEILAAHNWLHIDSLSALFLAIL 83
Query 76 GIVGTLATAASIGYIDTELAHGHID-GRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAI 134
GI+G + S+GY+ E+ +G I G YG FL M+L V +NN+ ++WV I
Sbjct 84 GIIGFITGIYSLGYMRHEVNNGEITVGTLCNYYGFFH-LFLFTMLLVVTSNNLILMWVGI 142
Query 135 EATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALN 194
EATT+ +AFLVG R++LEA WKY++IC+VG+A GTVL+Y A + A A+
Sbjct 143 EATTLSSAFLVGLYGQRSSLEAAWKYIIICTVGVAFGLYGTVLVYANAANVLADPGSAIF 202
Query 195 LDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLL 254
+++EHA LDP + LA +LIG+G K GLFP H+WL DAHS+AP+P SAL+S VLL
Sbjct 203 WTVVSEHAKELDPSLMHLAFVFILIGFGTKTGLFPMHSWLPDAHSEAPSPTSALLSAVLL 262
Query 255 AVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHM 314
A V+IR I+ A GP + + LLV G+ ++ V+ + D+KR+LAYSS+E+M
Sbjct 263 NCALLVIIRYYIIISAAIGPHFPQMLLLVFGMMSVAVSAFFILAQRDMKRLLAYSSVENM 322
Query 315 GLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRL 374
GLIA+A G L + A L H L H + KT+LF G + + + + I G++R + L
Sbjct 323 GLIAVALGIGGPLGVLAALFHTLNHSLAKTLLFCGSGNVLLKYGTRDMGAIKGIIRVAPL 382
Query 375 IGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAALLLIAIGFTALARNSGR 434
V A G + L G+PPF +F SE + + N W++ A LLL+ + L R
Sbjct 383 TAVLLAGGALALAGMPPFNVFISEFMVVAAAINAGHIWLVIALLLLLTLVLAGLVRMIAN 442
Query 435 MLLGTPAA 442
+LGTP A
Sbjct 443 TVLGTPPA 450
>gi|89074817|ref|ZP_01161271.1| NADH dehydrogenase subunit N [Photobacterium sp. SKA34]
gi|89049392|gb|EAR54954.1| NADH dehydrogenase subunit N [Photobacterium sp. SKA34]
Length=525
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 174/455 (39%), Positives = 249/455 (55%), Gaps = 31/455 (6%)
Query 2 TGLLLAAILAPLAASIASLITGW-----RR------TTATLTALSATTVLACAVAMGFWM 50
T LLL+ I APL ASI SL++ + R+ +T+ L T+ LA +V
Sbjct 4 TVLLLSVIAAPLIASIISLLSYFAGSSVRKGAICLHVISTIIVLVGTSTLAWSV-----F 58
Query 51 GSGAQFGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVL 110
G L D L+ + + V+G+VG + S+GYI E G IDG+ LY L
Sbjct 59 TQGPLLALDSWFYLDGLSGLFIAVLGVVGFITGLYSLGYIGHEYKEGEIDGKKVSLYYGL 118
Query 111 TPAFLCAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAV 170
FL M+++V +NN+ ++WVAIEATTV + FLVG R++LEA WKY+VICSVG+A
Sbjct 119 FNLFLATMLISVASNNVIMMWVAIEATTVSSVFLVGLYGKRSSLEAAWKYIVICSVGVAF 178
Query 171 AFLGTVLLYFAARDSGAAAAGALNLDIL----AEHAAGLDPGVARLAGGLLLIGYGAKAG 226
G++L Y + AA ++ +L E+A LDP + L+ ++IG+G K G
Sbjct 179 GLFGSILAY----SNAAAVLSPIDHPVLWTTIKENATLLDPTLVHLSFVFIIIGFGTKTG 234
Query 227 LFPFHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGL 286
LFP H WL DAHS+AP+PVSAL+S LL A V++R I GP + + L+ G
Sbjct 235 LFPMHAWLPDAHSEAPSPVSALLSAGLLNCALLVILRYYIITVKAIGPHFPQMLLMTFGF 294
Query 287 ATLLVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVL 346
++ VA + D+KR+LAYSS+E+MGLI +A G IA LLHV+ H +GKT++
Sbjct 295 LSVAVAAFFIITQRDIKRLLAYSSVENMGLITLAIGLGPIGVIAG-LLHVINHSLGKTLM 353
Query 347 FLAGGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIAR--- 403
F G + S I ++ G+MR + + V VG + L G+PPF +F SE +
Sbjct 354 FCGAGNILLKFGSRNIDEVKGIMRVAPVTAVLVGVGALALGGVPPFNLFISEFMVVTAGI 413
Query 404 SLANERLAWVLGAALLLIAIGFTALARNSGRMLLG 438
S N +L LL++ I LAR +LG
Sbjct 414 SSGNTMFTIIL---LLMLTIVLAGLARMVASCVLG 445
>gi|258514104|ref|YP_003190326.1| NADH/Ubiquinone/plastoquinone (complex I) [Desulfotomaculum acetoxidans
DSM 771]
gi|257777809|gb|ACV61703.1| Hydrogenase 4, membrane subunit [Desulfotomaculum acetoxidans
DSM 771]
Length=489
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/378 (39%), Positives = 225/378 (60%), Gaps = 6/378 (1%)
Query 65 DALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCA 124
DAL+ V + +IG+VGT+ ++ Y+ + G ++ R ++ L FL +M LAV A
Sbjct 63 DALSSVFVFIIGVVGTICCLYAVSYLRRDQERGELEQRRTGIFFGLLHLFLASMYLAVLA 122
Query 125 NNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARD 184
+N+GV+WVAIEATT+++A LVG + +LEA WKY++IC+VGIA A LG + Y+A R
Sbjct 123 DNLGVMWVAIEATTIVSALLVGFYGHKESLEAAWKYIIICTVGIAFAMLGIIFTYYAVRG 182
Query 185 SGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAP 244
+L+ +L A +DP + +LA +L+GYG KAGLFP HTWL DAHSQAP+P
Sbjct 183 ISGGEEISLSWRLLFSMAGQIDPSLMKLAFIFVLVGYGTKAGLFPLHTWLPDAHSQAPSP 242
Query 245 VSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKR 304
VSAL+SGVLL A +IR + G + L++ GL +++ ++ + V D+KR
Sbjct 243 VSALLSGVLLNCAVYAIIRFHLLTVKSVGGNFSAKLLIIFGLLSMVGSLPFILVQKDIKR 302
Query 305 MLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIAD 364
+LAYSS+EH+G+I + G L LLH++ H +GK+VLFL+ G L ++S I
Sbjct 303 LLAYSSVEHIGIIVLGVGIGGVLGYTGALLHLINHALGKSVLFLSAGTLTQKYNSKLIPK 362
Query 365 ITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIAR---SLANERLAWVLGAALLLI 421
+ G+ + + F L+ + G PPF +F SEL +A + + + ++ L++I
Sbjct 363 MKGIGQLLPITSTVFMASLLAIGGAPPFGLFISELNVASGGFAYVGKSVGFIF---LMVI 419
Query 422 AIGFTALARNSGRMLLGT 439
AI F L +G+M
Sbjct 420 AIVFAGLIYFAGKMYFSN 437
>gi|341955809|gb|EGT82259.1| hydrogenase-4 component F [Haemophilus haemolyticus M19107]
Length=512
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/328 (42%), Positives = 207/328 (64%), Gaps = 0/328 (0%)
Query 65 DALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCA 124
D+L+ + L +I +VG+LA SIGY++TEL HID ++ Y F M+++V
Sbjct 70 DSLSAIFLGLIAVVGSLAGVYSIGYMNTELEEWHIDFKTYAHYHGFLHLFFFTMIVSVIT 129
Query 125 NNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARD 184
NN+ ++WVAIEATT+ +AFLVG + +T+LEA WKY++ICSVG+A GT+L + A
Sbjct 130 NNLILMWVAIEATTLSSAFLVGTYKQKTSLEAAWKYIIICSVGVAFGLYGTLLTFANANG 189
Query 185 SGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAP 244
A + A+ + + A GL+P + +A +LIG+G K GLFP HTWL+DAHS+AP+P
Sbjct 190 VLADPSQAIFWSAVNQQATGLNPMLMYIAFAFVLIGFGTKCGLFPMHTWLSDAHSEAPSP 249
Query 245 VSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKR 304
VSA++S VLL A V++R ++ G + + +L+ GL ++LVA L + V D+KR
Sbjct 250 VSAILSAVLLNCAMLVVLRYYTLVSKAVGAEFPQTLMLIFGLLSVLVAALFIIVQFDIKR 309
Query 305 MLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIAD 364
+LAYSS+E+MGLI+ A G + + A LLH + H + KT+LF A G + + + +
Sbjct 310 LLAYSSIENMGLISFAFGLGGPIGVFAGLLHTINHSLAKTLLFCASGNILLKYKTRDMNQ 369
Query 365 ITGVMRRSRLIGVSFAVGLIVLLGLPPF 392
+ G+ R + + V FA G + L +PPF
Sbjct 370 VRGLWRVAPVSAVLFAGGALALGSIPPF 397
>gi|90426042|ref|YP_534412.1| hydrogenase 4 subunit F [Rhodopseudomonas palustris BisB18]
gi|90108056|gb|ABD90093.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
Length=512
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/377 (40%), Positives = 212/377 (57%), Gaps = 1/377 (0%)
Query 25 RRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVMLVVIGIVGTLATA 84
RR A ++ + +G + SG G L D L + + +IG+VG L
Sbjct 32 RRIELLHLASLVVVLVLALMTVGHVLSSGNLMAFGDWLMVDPLAAIFVGLIGVVGCLTGF 91
Query 85 ASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAIEATTVITAFL 144
SIGYI ++AHG + +LY FL M+L V ANNI ++WV IEATT+ +AFL
Sbjct 92 YSIGYIRHDVAHGELTPWKQKLYYGFFNLFLFTMLLVVTANNIVMMWVGIEATTLGSAFL 151
Query 145 VGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALNLDILAEHAAG 204
VG T+LEA WKY++ICSVG+A GTVL + A S L I+A HA
Sbjct 152 VGIYGKGTSLEAAWKYLIICSVGVAFGLYGTVLTFANAAASIDPHQAVLWTSIMA-HAQE 210
Query 205 LDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRL 264
LDP + ++A +LIG+G KAG+FP H WL DAHS+AP+PVS L+SGVLL V+IR
Sbjct 211 LDPTLIKIAFVFVLIGFGTKAGIFPMHAWLPDAHSEAPSPVSGLLSGVLLKCGLFVIIRY 270
Query 265 RPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAG 324
+ GP + ++ LLV+G+ T+ ++ ++ V D KR LAY S+EH+GLI I G
Sbjct 271 YAVTIKAIGPEFPQSMLLVLGVLTVAISAFLVFVQHDFKRKLAYHSIEHVGLIVIGLGVG 330
Query 325 TTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLI 384
L IAA LLH + H K +LF G + + + + + G++R + + G+ G +
Sbjct 331 GPLGIAAALLHTINHSFTKALLFCGSGNVLQKYGTRDLRSVKGILRTAPVTGLFIMAGAL 390
Query 385 VLLGLPPFAMFASELAI 401
L G PPF +F SE +
Sbjct 391 ALAGFPPFNVFVSEFMV 407
>gi|94313590|ref|YP_586799.1| hydrogenase 4 subunit F [Cupriavidus metallidurans CH34]
gi|93357442|gb|ABF11530.1| hydrogenase 4 subunit F [Cupriavidus metallidurans CH34]
Length=484
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 163/418 (39%), Positives = 225/418 (54%), Gaps = 28/418 (6%)
Query 65 DALTVVMLVVIGIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCA 124
D+L V ++ + +VG + S Y+ E HG + RLY + F+ M+LA+
Sbjct 65 DSLNVFLVALTALVGLTTSLFSRPYMRIERDHGKMTPPRLRLYHSMYQLFMFTMLLALTT 124
Query 125 NNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARD 184
NN+G++WVA+EA T+ T LV RT +LEA WKY ++C VGIA A GTVLLY AA
Sbjct 125 NNLGIVWVAMEAATLTTVLLVSVYRTAASLEAAWKYFILCGVGIAQALFGTVLLYMAAEK 184
Query 185 SGAAAAGAL---NLDILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQA 241
A GAL NL+ + EH LDP + LA L IGYG K GL P H WL DAH++
Sbjct 185 VVGAEGGALLWTNLNAVKEH---LDPNIITLAFAFLFIGYGTKVGLVPLHNWLPDAHAEG 241
Query 242 PAPVSALMSGVLLAVAFSVLIRLRPILDAVSGP---AYLRNGLLVVGLATLLVAVLMLTV 298
P PVSA++SG+LL VA ++R + + DA G YL G GL +++ AV L
Sbjct 242 PTPVSAVLSGLLLNVALYAVLRCKMLTDAAVGSHLTGYLMMGF---GLLSVVAAVFFLMR 298
Query 299 TGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHD 358
DVKRM AYSS+EHMGLI A G +A A LLH+ H + K+ +F A G
Sbjct 299 QRDVKRMFAYSSIEHMGLITFAFGMGGPIASYAGLLHMTMHSLVKSAIFFAVGHAAQKAG 358
Query 359 STAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASELAIARSLANERLAWVLGAAL 418
+ + DI G++R S +G +G + +LG+PPF +FASE I + E AW L
Sbjct 359 TQIMDDIRGLIRVSPTVGWGLMLGALAILGMPPFGVFASEFLIVTTAMREH-AWATPFLL 417
Query 419 LLIAIGFTALARNSGRMLLG----TPAAGAPAITVPATAAAALMVGIVVSAALGITAG 472
+ + + F ++ M+ G P A PA +V + + ALG+ AG
Sbjct 418 IALGVAFASIFSRVQPMVFGDTELKPLAHPPA-----------LVPVFLHLALGLVAG 464
>gi|238788861|ref|ZP_04632652.1| Hydrogenase-4 component F [Yersinia frederiksenii ATCC 33641]
gi|238723166|gb|EEQ14815.1| Hydrogenase-4 component F [Yersinia frederiksenii ATCC 33641]
Length=545
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 153/386 (40%), Positives = 223/386 (58%), Gaps = 5/386 (1%)
Query 16 SIASLITGWRRTTATLTALSATTVLACAVAMGFWMGSGAQFGLGGLLRADALTVVMLVVI 75
S A + T W T L + C VA+G G L D+L+ + L ++
Sbjct 29 SSARMATTWVHFTGITLLLVVALTVVCRVALG-----GEILVAHNWLHIDSLSALFLAIL 83
Query 76 GIVGTLATAASIGYIDTELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAIE 135
G++G + S+GY+ E+ +G I + Y FL M+L V +NN+ ++WV IE
Sbjct 84 GVIGFITGLYSLGYMRHEVNNGEITVSTLCSYYGFFHLFLFTMLLVVTSNNLILMWVGIE 143
Query 136 ATTVITAFLVGHRRTRTALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALNL 195
ATT+ +AFLVG R++LEA WKY++IC+VG+A GTVL+Y A + A + A+
Sbjct 144 ATTLSSAFLVGLYGQRSSLEAAWKYIIICTVGVAFGLYGTVLVYANAANVLADPSSAIFW 203
Query 196 DILAEHAAGLDPGVARLAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLLA 255
++AEHA LDP + LA +LIG+G K GLFP H+WL DAHS+AP+P SAL+S VLL
Sbjct 204 TVVAEHAKELDPSLMHLAFVFILIGFGTKTGLFPMHSWLPDAHSEAPSPTSALLSAVLLN 263
Query 256 VAFSVLIRLRPILDAVSGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHMG 315
A V+IR I+ A GP + + LLV G+ ++ V+ + D+KR+LAYSS+E+MG
Sbjct 264 CALLVIIRYYIIISAAIGPHFPQMLLLVFGMMSVAVSAFFILAQRDMKRLLAYSSVENMG 323
Query 316 LIAIAAAAGTTLAIAALLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRLI 375
LIA+A G L + A L H L H + KT+LF G + + + + I G++R + L
Sbjct 324 LIAVALGIGGPLGVLAALFHTLNHSLAKTLLFCGSGNVLLKYGTRDMGAIKGIIRVAPLT 383
Query 376 GVSFAVGLIVLLGLPPFAMFASELAI 401
V A G + L G+PPF +F SE +
Sbjct 384 AVLLAGGALALAGMPPFNVFISEFMV 409
>gi|238784031|ref|ZP_04628046.1| Hydrogenase-4 component F [Yersinia bercovieri ATCC 43970]
gi|238715008|gb|EEQ07005.1| Hydrogenase-4 component F [Yersinia bercovieri ATCC 43970]
Length=545
Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 151/359 (43%), Positives = 215/359 (60%), Gaps = 7/359 (1%)
Query 42 CAVAMGFWMGSGAQFGLGGLLRADALTVVMLVVIGIVGTLATAASIGYIDTELAHGHID- 100
C VA+G G L D+L+ + L ++GI+G + S+GY+ E+ +G I
Sbjct 55 CRVALG-----GEILAAHHWLHIDSLSALFLAILGIIGFITGLYSLGYMRHEVNNGEITV 109
Query 101 GRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTRTALEATWKY 160
G YG FL M+L V +NN+ ++WV IEATT+ +AFLVG R++LEA WKY
Sbjct 110 GTLCNYYGFFH-LFLFTMLLVVTSNNLILMWVGIEATTLSSAFLVGLYGQRSSLEAAWKY 168
Query 161 VVICSVGIAVAFLGTVLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVARLAGGLLLIG 220
++IC+VG+A GTVL+Y A A A+ ++AEHA LDP + LA +LIG
Sbjct 169 IIICTVGVAFGLYGTVLVYANAASVLADPGSAIFWTVVAEHAKELDPRLMHLAFVFILIG 228
Query 221 YGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAVSGPAYLRNG 280
+G K GLFP H+WL DAHS+AP+P SAL+S VLL A V+IR I+ A GP + +
Sbjct 229 FGTKTGLFPMHSWLPDAHSEAPSPTSALLSAVLLNCALLVIIRYYIIISAAIGPHFPQML 288
Query 281 LLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAALLLHVLAHG 340
LLV G+ ++ V+ L + D+KR+LAYSS+E+MGLIA+A G L + A L H L H
Sbjct 289 LLVFGMMSVAVSALFILAQRDMKRLLAYSSVENMGLIAVALGIGGPLGVVAALFHTLNHS 348
Query 341 IGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPPFAMFASEL 399
+ KT+LF G + + + + I G++R + L V A G + L G+PPF++F SE
Sbjct 349 LAKTLLFCGSGNVLLKYGTRDMGAIKGIIRVAPLTAVLLAGGALALAGMPPFSLFISEF 407
>gi|139437058|ref|ZP_01771218.1| Hypothetical protein COLAER_00193 [Collinsella aerofaciens ATCC
25986]
gi|133776705|gb|EBA40525.1| Hypothetical protein COLAER_00193 [Collinsella aerofaciens ATCC
25986]
Length=521
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/451 (37%), Positives = 245/451 (55%), Gaps = 16/451 (3%)
Query 33 ALSATTVLACAVAMGFWMGSGAQFG-LGGLLRADALTVVMLVVIGIVGTLATAASIGYID 91
+++AT VL+ A G + SG LG L D+L+ + ++++GI+G + SI YI
Sbjct 40 SVAATLVLSVVTA-GTMLSSGQNIDALGLWLHLDSLSSIFVLLVGIIGFITGVYSISYIK 98
Query 92 TELAHGHIDGRSARLYGVLTPAFLCAMVLAVCANNIGVIWVAIEATTVITAFLVGHRRTR 151
++ + + Y L F+ M+LA +NNI + W A+EATT+ T FLVG + +
Sbjct 99 IDIKEKTMPAERTKQYYALFSLFVFTMLLACLSNNIILTWAAVEATTLSTVFLVGIYKNK 158
Query 152 TALEATWKYVVICSVGIAVAFLGTVLLYFAARDSGAAAAGALNLDILAEHAAGLDPGVAR 211
ALEA+WKY ++C+ G+A GT+L+Y A D A A L + +A DP + R
Sbjct 159 QALEASWKYAMVCTAGVAFGLFGTLLIYANAADIMPNAHEAAFLTSIMPYADQFDPMLVR 218
Query 212 LAGGLLLIGYGAKAGLFPFHTWLADAHSQAPAPVSALMSGVLLAVAFSVLIRLRPILDAV 271
LA ++IG+G KAGLFP HTWL DAHSQAP+PVSAL+SGVLL A V+IR +
Sbjct 219 LAFAFIVIGFGTKAGLFPMHTWLPDAHSQAPSPVSALLSGVLLKCAMLVIIRFYSLSIIT 278
Query 272 SGPAYLRNGLLVVGLATLLVAVLMLTVTGDVKRMLAYSSMEHMGLIAIAAAAGTTLAIAA 331
G Y R LL++G ++LVA L + D+KR AYSS++++G++A+ G L IAA
Sbjct 279 VGDTYPRTLLLILGTLSILVAALCIFKQDDIKRRFAYSSVDNVGVVALCLGIGGPLGIAA 338
Query 332 LLLHVLAHGIGKTVLFLAGGQLQAAHDSTAIADITGVMRRSRLIGVSFAVGLIVLLGLPP 391
LLH + HG K + F G +Q + + + I GV+ + + + L+ L PP
Sbjct 339 CLLHCIFHGFTKALAFCMAGNIQHIYHTRDLNKIKGVVEIAPVTAALTIIALLALAAFPP 398
Query 392 FAMFASELAIARSLANERLAWVLGAALLLIAIGFT---------ALARNSGRMLLGTPAA 442
FA+F SE + WV ++L+AIG T AL G+ G
Sbjct 399 FALFISEFLTFVAGIQSGPIWV----VVLVAIGLTGVYFALTGIALKSIFGKAPEGMKRH 454
Query 443 GAPAI-TVPATAAAALMVGIVVSAALGITAG 472
PA+ +P A A +++ ++ + IT+G
Sbjct 455 EVPALMIIPEIALAIVVMWFGIATPVAITSG 485
Lambda K H
0.326 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1041221813024
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40