BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0087 Length=492 Score E Sequences producing significant alignments: (Bits) Value gi|15607229|ref|NP_214601.1| formate hydrogenase HycE [Mycobacte... 974 0.0 gi|31791265|ref|NP_853758.1| formate hydrogenase HycQ [Mycobacte... 973 0.0 gi|289552338|ref|ZP_06441548.1| formate hydrogenase hycE [Mycoba... 973 0.0 gi|289445617|ref|ZP_06435361.1| formate hydrogenase hycE [Mycoba... 972 0.0 gi|339293156|gb|AEJ45267.1| formate hydrogenase HycE [Mycobacter... 967 0.0 gi|340625122|ref|YP_004743574.1| putative formate hydrogenase HY... 891 0.0 gi|289764203|ref|ZP_06523581.1| formate hydrogenase hycE [Mycoba... 885 0.0 gi|323717287|gb|EGB26493.1| hypothetical protein TMMG_00511 [Myc... 852 0.0 gi|296166646|ref|ZP_06849072.1| hydrogenase-4, G subunit [Mycoba... 760 0.0 gi|118463072|ref|YP_884227.1| hydrogenase-4, G subunit, putative... 737 0.0 gi|342862428|ref|ZP_08719068.1| putative formate hydrogenase HYC... 717 0.0 gi|333991247|ref|YP_004523861.1| formate hydrogenase HycE [Mycob... 689 0.0 gi|183981673|ref|YP_001849964.1| formate hydrogenase HycE [Mycob... 684 0.0 gi|240169559|ref|ZP_04748218.1| formate hydrogenase HycE [Mycoba... 676 0.0 gi|258653159|ref|YP_003202315.1| NADH dehydrogenase (ubiquinone)... 548 8e-154 gi|331694633|ref|YP_004330872.1| NADH dehydrogenase (ubiquinone)... 545 6e-153 gi|269128896|ref|YP_003302266.1| NADH dehydrogenase (ubiquinone)... 541 8e-152 gi|317126121|ref|YP_004100233.1| NADH dehydrogenase subunit C [I... 522 5e-146 gi|336178230|ref|YP_004583605.1| NADH dehydrogenase (quinone) [F... 514 9e-144 gi|119718684|ref|YP_925649.1| NADH-ubiquinone oxidoreductase, ch... 461 2e-127 gi|258593564|emb|CBE69905.1| Hydrogenase, large subunit-like pro... 376 4e-102 gi|182414280|ref|YP_001819346.1| NADH dehydrogenase (quinone) [O... 329 6e-88 gi|302039527|ref|YP_003799849.1| putative formate hydrogenlyase ... 325 9e-87 gi|343917167|gb|EGV27976.1| NADH dehydrogenase (quinone) [Thiorh... 312 7e-83 gi|344943806|ref|ZP_08783092.1| NADH dehydrogenase (ubiquinone) ... 311 2e-82 gi|147919460|ref|YP_686800.1| hydrogenase, large subunit-like pr... 306 7e-81 gi|91202884|emb|CAJ72523.1| similar to membrane-bound [NiFe]-hyd... 304 2e-80 gi|91779763|ref|YP_554971.1| putative formate hydrogenlyase subu... 304 2e-80 gi|333983291|ref|YP_004512501.1| NADH dehydrogenase (ubiquinone)... 302 1e-79 gi|296161107|ref|ZP_06843917.1| putative formate hydrogenlyase s... 301 1e-79 gi|154244128|ref|YP_001415086.1| NADH-ubiquinone oxidoreductase ... 300 3e-79 gi|288818461|ref|YP_003432809.1| NADH dehydrogenase/hydrogenase ... 300 4e-79 gi|91780243|ref|YP_555450.1| putative NADH-ubiquinone oxidoreduc... 297 4e-78 gi|182679429|ref|YP_001833575.1| NADH dehydrogenase (quinone) [B... 297 4e-78 gi|323139191|ref|ZP_08074247.1| NADH-ubiquinone oxidoreductase c... 295 1e-77 gi|344341646|ref|ZP_08772563.1| NADH dehydrogenase (quinone) [Th... 295 1e-77 gi|296446946|ref|ZP_06888881.1| NADH-ubiquinone oxidoreductase c... 292 9e-77 gi|53804773|ref|YP_113608.1| hydrogenase subunit [Methylococcus ... 292 9e-77 gi|337266646|ref|YP_004610701.1| NADH-ubiquinone oxidoreductase ... 292 9e-77 gi|188996638|ref|YP_001930889.1| NADH dehydrogenase (ubiquinone)... 292 1e-76 gi|209964718|ref|YP_002297633.1| hydrogenase-4 component G [Rhod... 291 2e-76 gi|114775565|ref|ZP_01451133.1| hydrogenase subunit [Mariprofund... 291 2e-76 gi|299132788|ref|ZP_07025983.1| NADH dehydrogenase (quinone) [Af... 290 3e-76 gi|211948047|gb|ACJ13746.1| HyqG [Azorhizobium caulinodans ORS 571] 288 1e-75 gi|186470859|ref|YP_001862177.1| NADH-ubiquinone oxidoreductase ... 288 1e-75 gi|344327625|gb|EGW39047.1| respiratory-chain NADH dehydrogenase... 288 1e-75 gi|158425980|ref|YP_001527272.1| NADH-ubiquinone oxidoreductase ... 288 2e-75 gi|90422452|ref|YP_530822.1| NADH-ubiquinone oxidoreductase subu... 287 3e-75 gi|344172625|emb|CCA85275.1| hydrogenase-4 component G [Ralstoni... 286 5e-75 gi|258514105|ref|YP_003190327.1| NADH dehydrogenase (ubiquinone)... 286 7e-75 >gi|15607229|ref|NP_214601.1| formate hydrogenase HycE [Mycobacterium tuberculosis H37Rv] gi|148659849|ref|YP_001281372.1| putative formate hydrogenase HycE [Mycobacterium tuberculosis H37Ra] gi|148821279|ref|YP_001286033.1| formate hydrogenase hycE [Mycobacterium tuberculosis F11] 52 more sequence titles Length=492 Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/492 (99%), Positives = 492/492 (100%), Gaps = 0/492 (0%) Query 1 VMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 +MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE Sbjct 1 MMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 Query 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA Sbjct 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH Sbjct 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL Sbjct 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 Query 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL Sbjct 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 Query 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA Sbjct 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 Query 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG Sbjct 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN Sbjct 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 Query 481 KSFNQSYAGNDL 492 KSFNQSYAGNDL Sbjct 481 KSFNQSYAGNDL 492 >gi|31791265|ref|NP_853758.1| formate hydrogenase HycQ [Mycobacterium bovis AF2122/97] gi|121636000|ref|YP_976223.1| putative formate hydrogenase hycQ (FHL) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988473|ref|YP_002643160.1| putative formate hydrogenase [Mycobacterium bovis BCG str. Tokyo 172] gi|31616850|emb|CAD92952.1| POSSIBLE FORMATE HYDROGENASE HYCQ (FHL) [Mycobacterium bovis AF2122/97] gi|121491647|emb|CAL70105.1| Possible formate hydrogenase hycQ (FHL) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771586|dbj|BAH24392.1| putative formate hydrogenase [Mycobacterium bovis BCG str. Tokyo 172] gi|341600016|emb|CCC62684.1| possible formate hydrogenase hycQ (FHL) [Mycobacterium bovis BCG str. Moreau RDJ] Length=492 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/492 (99%), Positives = 492/492 (100%), Gaps = 0/492 (0%) Query 1 VMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 +MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE Sbjct 1 MMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 Query 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA Sbjct 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH Sbjct 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHE+HRLRALIVEL Sbjct 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLRALIVEL 240 Query 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL Sbjct 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 Query 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA Sbjct 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 Query 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG Sbjct 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN Sbjct 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 Query 481 KSFNQSYAGNDL 492 KSFNQSYAGNDL Sbjct 481 KSFNQSYAGNDL 492 >gi|289552338|ref|ZP_06441548.1| formate hydrogenase hycE [Mycobacterium tuberculosis KZN 605] gi|298527479|ref|ZP_07014888.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308375061|ref|ZP_07667939.1| formate hydrogenase hycE [Mycobacterium tuberculosis SUMu007] 6 more sequence titles Length=491 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/491 (100%), Positives = 491/491 (100%), Gaps = 0/491 (0%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY Sbjct 1 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG 121 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG Sbjct 61 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG 120 Query 122 PAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 181 PAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR Sbjct 121 PAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 180 Query 182 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE 241 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE Sbjct 181 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE 240 Query 242 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP 301 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP Sbjct 241 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP 300 Query 302 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR 361 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR Sbjct 301 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR 360 Query 362 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA 421 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA Sbjct 361 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA 420 Query 422 PSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANK 481 PSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANK Sbjct 421 PSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANK 480 Query 482 SFNQSYAGNDL 492 SFNQSYAGNDL Sbjct 481 SFNQSYAGNDL 491 >gi|289445617|ref|ZP_06435361.1| formate hydrogenase hycE [Mycobacterium tuberculosis CPHL_A] gi|289418575|gb|EFD15776.1| formate hydrogenase hycE [Mycobacterium tuberculosis CPHL_A] Length=492 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/492 (99%), Positives = 492/492 (100%), Gaps = 0/492 (0%) Query 1 VMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 +MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE Sbjct 1 MMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 Query 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA Sbjct 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVH+GLIEPGHFRFSVAGETIVRLKARLWFVH Sbjct 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHSGLIEPGHFRFSVAGETIVRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL Sbjct 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 Query 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL Sbjct 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 Query 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA Sbjct 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 Query 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG Sbjct 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN Sbjct 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 Query 481 KSFNQSYAGNDL 492 KSFNQSYAGNDL Sbjct 481 KSFNQSYAGNDL 492 >gi|339293156|gb|AEJ45267.1| formate hydrogenase HycE [Mycobacterium tuberculosis CCDC5079] Length=492 Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/492 (99%), Positives = 490/492 (99%), Gaps = 0/492 (0%) Query 1 VMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 +MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE Sbjct 1 MMSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELE 60 Query 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA Sbjct 61 YVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH Sbjct 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL Sbjct 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 Query 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL Sbjct 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 Query 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA Sbjct 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 Query 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG Sbjct 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 APSSGIGIVEGWRGTIVHRVEIDVDGRITRA+VV PSWFNWPALPVAMAD IVPDFPLAN Sbjct 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAEVVGPSWFNWPALPVAMADAIVPDFPLAN 480 Query 481 KSFNQSYAGNDL 492 KSFNQSYAGNDL Sbjct 481 KSFNQSYAGNDL 492 >gi|340625122|ref|YP_004743574.1| putative formate hydrogenase HYCE [Mycobacterium canettii CIPT 140010059] gi|340003312|emb|CCC42429.1| putative formate hydrogenase HYCE (FHL) [Mycobacterium canettii CIPT 140010059] Length=491 Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/491 (94%), Positives = 468/491 (96%), Gaps = 0/491 (0%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGD LRVVYLFLAG PDRRVELEY Sbjct 1 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDRLRVVYLFLAGRPDRRVELEY 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG 121 VVPADNPEIRSLAY+SFPAGRFEREMADLYGIRPVGHPKPRRLVRH HWP+WHPMRTDAG Sbjct 61 VVPADNPEIRSLAYMSFPAGRFEREMADLYGIRPVGHPKPRRLVRHGHWPEWHPMRTDAG 120 Query 122 PAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 181 P PEFT TGAFPFL VEG GVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR Sbjct 121 PTPEFTGTGAFPFLTVEGRGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 180 Query 182 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE 241 GIEKLFHGR AT A DLAERISGDTSAAHALAHSLAIEDALGIELP EVHRLRALIVELE Sbjct 181 GIEKLFHGRLATGAADLAERISGDTSAAHALAHSLAIEDALGIELPDEVHRLRALIVELE 240 Query 242 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP 301 RLYNHAADLGALANDVGYS+ANAHAQRIRE LLR NAAVTGHRLLRGAIR GG+ALR LP Sbjct 241 RLYNHAADLGALANDVGYSVANAHAQRIREKLLRLNAAVTGHRLLRGAIRPGGIALRTLP 300 Query 302 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR 361 DTDEL ALA DLAE+A LTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGL +DAR Sbjct 301 DTDELQALAGDLAEIAALTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLHTDAR 360 Query 362 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA 421 VEHPT VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGP+EY +T+HPVGA Sbjct 361 VEHPTTVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPMEYTSTVHPVGA 420 Query 422 PSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANK 481 PSSG+GIVEGWRGTIVHRVEID GRITRAKVVDPSWFNWPALPV+MADTIVPDFPLANK Sbjct 421 PSSGVGIVEGWRGTIVHRVEIDAAGRITRAKVVDPSWFNWPALPVSMADTIVPDFPLANK 480 Query 482 SFNQSYAGNDL 492 SFNQSYAGNDL Sbjct 481 SFNQSYAGNDL 491 >gi|289764203|ref|ZP_06523581.1| formate hydrogenase hycE [Mycobacterium tuberculosis GM 1503] gi|289711709|gb|EFD75725.1| formate hydrogenase hycE [Mycobacterium tuberculosis GM 1503] Length=567 Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/449 (99%), Positives = 449/449 (100%), Gaps = 0/449 (0%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY Sbjct 1 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG 121 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG Sbjct 61 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAG 120 Query 122 PAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 181 PAPEFTDTGAFPFLAVEGPGVYEIPVGP+HAGLIEPGHFRFSVAGETIVRLKARLWFVHR Sbjct 121 PAPEFTDTGAFPFLAVEGPGVYEIPVGPMHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 180 Query 182 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE 241 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE Sbjct 181 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELE 240 Query 242 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP 301 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP Sbjct 241 RLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALP 300 Query 302 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR 361 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR Sbjct 301 DTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR 360 Query 362 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA 421 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA Sbjct 361 VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGA 420 Query 422 PSSGIGIVEGWRGTIVHRVEIDVDGRITR 450 PSSGIGIVEGWRGTIVHRVEIDVDGRITR Sbjct 421 PSSGIGIVEGWRGTIVHRVEIDVDGRITR 449 >gi|323717287|gb|EGB26493.1| hypothetical protein TMMG_00511 [Mycobacterium tuberculosis CDC1551A] Length=430 Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/430 (99%), Positives = 430/430 (100%), Gaps = 0/430 (0%) Query 63 VPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGP 122 +PADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGP Sbjct 1 MPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGP 60 Query 123 APEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRG 182 APEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRG Sbjct 61 APEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRG 120 Query 183 IEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELER 242 IEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELER Sbjct 121 IEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELER 180 Query 243 LYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPD 302 LYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPD Sbjct 181 LYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPD 240 Query 303 TDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARV 362 TDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARV Sbjct 241 TDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARV 300 Query 363 EHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAP 422 EHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAP Sbjct 301 EHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAP 360 Query 423 SSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKS 482 SSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKS Sbjct 361 SSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKS 420 Query 483 FNQSYAGNDL 492 FNQSYAGNDL Sbjct 421 FNQSYAGNDL 430 >gi|296166646|ref|ZP_06849072.1| hydrogenase-4, G subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897981|gb|EFG77561.1| hydrogenase-4, G subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=491 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/492 (78%), Positives = 416/492 (85%), Gaps = 2/492 (0%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 M W R R+S+ L TAE+L + FRL LVAAHDDG LRVVYLFLAG PDRRVELE Sbjct 1 MKPRWQRDRMSQARLDDTAEELLGNGFRLGLVAAHDDGADLRVVYLFLAGRPDRRVELEC 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDA 120 VVP P +RSLAYLSFPAGRFEREMADLYGIR VGHPK RRLVRHAHWP DWHPMR DA Sbjct 61 VVPKHEPAVRSLAYLSFPAGRFEREMADLYGIRSVGHPKARRLVRHAHWPEDWHPMRHDA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 P PEF G FPF+ VEGPGVYEIPVGPVHAGLIEPGHFRFSVAGET++RLKARLWFVH Sbjct 121 SPVPEFDGAGHFPFVTVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETVLRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 RG+EKLF GRP AV+LAER+SGDTSA HALAH LAIEDALG+ELP EVHRLRAL+VEL Sbjct 181 RGVEKLFEGRPPNGAVELAERVSGDTSAGHALAHCLAIEDALGVELPDEVHRLRALLVEL 240 Query 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 ERLYNHAADLGALANDVG+ +A+AH QRIRE LLR NA VTGHRLLRGA+R G VA+RAL Sbjct 241 ERLYNHAADLGALANDVGFGIAHAHTQRIRERLLRLNADVTGHRLLRGALRPGAVAVRAL 300 Query 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 PD L ++A DLAE+ LTL N+VVYDRFAGTAVLH DDA ALGCLGYVARASG+R+DA Sbjct 301 PDVAALQSVAADLAEITELTLRNTVVYDRFAGTAVLHEDDARALGCLGYVARASGVRTDA 360 Query 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 R+EHPT LP+TE+ A GDVLARYT+RRDEFAAS L +H+ E H GP EYA T+ G Sbjct 361 RLEHPTTALPVTEVRAAAGDVLARYTLRRDEFAASTELVRHLTELHYGPTEYAETMPAPG 420 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 A SGIGIVEGWRGTIVHRVEID GRI+RAK+VDPSWFNWPALPVAMADTIVPDFPLAN Sbjct 421 AARSGIGIVEGWRGTIVHRVEIDA-GRISRAKIVDPSWFNWPALPVAMADTIVPDFPLAN 479 Query 481 KSFNQSYAGNDL 492 KSFNQSYAGNDL Sbjct 480 KSFNQSYAGNDL 491 >gi|118463072|ref|YP_884227.1| hydrogenase-4, G subunit, putative [Mycobacterium avium 104] gi|118164359|gb|ABK65256.1| hydrogenase-4, G subunit, putative [Mycobacterium avium 104] Length=492 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/492 (77%), Positives = 420/492 (86%), Gaps = 1/492 (0%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 M+ W R VS L AE+L + FRLALVAAHDD D LRVVYLFLAG PDRRVELE Sbjct 1 MTPEWSRQPVSSDELRDRAEELTTNGFRLALVAAHDDADRLRVVYLFLAGRPDRRVELEC 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPD-WHPMRTDA 120 V+P D+P + SLAYLSFPAGRFEREM DLYGI P+GHP+PRRLVRHAHWP+ W+PMR DA Sbjct 61 VLPVDDPSLPSLAYLSFPAGRFEREMLDLYGISPIGHPRPRRLVRHAHWPEAWYPMRADA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 GPAPEFT TG FPF+ V+G GVYEIPVGPVHAGLIEPGHFRFSV GET++RLKARLWFVH Sbjct 121 GPAPEFTATGHFPFVTVDGTGVYEIPVGPVHAGLIEPGHFRFSVVGETVLRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVEL 240 RG+E+LFHGR A+ AVDLAER+SGDTSAAHALAHSLA+EDALGI +P+ VHRLRAL++EL Sbjct 181 RGLEQLFHGRIASGAVDLAERVSGDTSAAHALAHSLAVEDALGIVVPNNVHRLRALLIEL 240 Query 241 ERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRAL 300 ERLYNHAADLGALANDVG++LANAHA RIRE LLR NAAVTGHRLLRGAIR GGV L AL Sbjct 241 ERLYNHAADLGALANDVGFALANAHALRIREELLRINAAVTGHRLLRGAIRPGGVTLHAL 300 Query 301 PDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDA 360 PD +L ++A DLAEVA LTL NSV+YDRFAGTA+L DDA A+GCLGYVARASG+R+DA Sbjct 301 PDARQLRSIAADLAEVAELTLGNSVIYDRFAGTAILPADDACAMGCLGYVARASGIRTDA 360 Query 361 RVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG 420 RVEHP++ LP+TEI GDVLARYTVRRDEFAAS LA ++ ESHTG ++Y VG Sbjct 361 RVEHPSVALPVTEITQSAGDVLARYTVRRDEFAASTTLATYLAESHTGTLDYHTPTPVVG 420 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 P SG+GIVEGWRGTIVHRVEI D RITRAK+VDPSWFNWPALPVAMADTIVPDFPL N Sbjct 421 GPRSGVGIVEGWRGTIVHRVEIAADCRITRAKIVDPSWFNWPALPVAMADTIVPDFPLTN 480 Query 481 KSFNQSYAGNDL 492 KSFN SYAGNDL Sbjct 481 KSFNLSYAGNDL 492 >gi|342862428|ref|ZP_08719068.1| putative formate hydrogenase HYCE [Mycobacterium colombiense CECT 3035] gi|342130099|gb|EGT83433.1| putative formate hydrogenase HYCE [Mycobacterium colombiense CECT 3035] Length=496 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/496 (76%), Positives = 413/496 (84%), Gaps = 5/496 (1%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 M+ + RHR+S L +EQL + FRLALVAAHDD LR+VYLFLAG PDRRVELE Sbjct 1 MNTAVARHRLSRDELADMSEQLLGNGFRLALVAAHDDDSVLRLVYLFLAGAPDRRVELEC 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPD-WHPMRTDA 120 VVP +P +RSLA+LSFPA RFEREMADLYGI PVGHPKPRRLVRHAHWP+ WHPMR A Sbjct 61 VVPNGDPAVRSLAHLSFPASRFEREMADLYGISPVGHPKPRRLVRHAHWPEEWHPMRAAA 120 Query 121 GPAPEFTDTGA----FPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARL 176 GP PEF G FPF+ VEGPG+YEIPVGPVHAGLIEPGHFRFSVAGET+VRLKARL Sbjct 121 GPPPEFEGVGDLRAHFPFVTVEGPGIYEIPVGPVHAGLIEPGHFRFSVAGETVVRLKARL 180 Query 177 WFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRAL 236 WFVHRG+EKLF GRPA AV+LAERISGDTSAAHALAHSLA+EDALG+++P E HRLR+L Sbjct 181 WFVHRGMEKLFEGRPADDAVELAERISGDTSAAHALAHSLAVEDALGVQVPDEAHRLRSL 240 Query 237 IVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVA 296 +VELERLYNH DLGALANDVG+SLANAHAQR+RE LLR NA+VTGHRLLR AIR G V Sbjct 241 LVELERLYNHVTDLGALANDVGFSLANAHAQRVRERLLRLNASVTGHRLLRDAIRPGAVT 300 Query 297 LRALPDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGL 356 L+ALPD L A+A D+AE+A LTL NSVVYDRFAGTAVL +DA ALGCLGYVARASG+ Sbjct 301 LKALPDVAALRAIAADVAELAELTLRNSVVYDRFAGTAVLTREDARALGCLGYVARASGV 360 Query 357 RSDARVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATL 416 +DAR+EHPT VLP++ GA GDVLARYTVR EFAAS LA H+VESH GPIEY T+ Sbjct 361 HTDARLEHPTTVLPVSVSGADAGDVLARYTVRCQEFAASTDLACHLVESHCGPIEYVLTM 420 Query 417 HPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDF 476 SGIGIVEGWRGTIVHRVE D R+TRAK+VDPSWFNWPALPVAMADTIVPDF Sbjct 421 PTPQRKRSGIGIVEGWRGTIVHRVETDAANRLTRAKIVDPSWFNWPALPVAMADTIVPDF 480 Query 477 PLANKSFNQSYAGNDL 492 PLANKSFNQSYAGNDL Sbjct 481 PLANKSFNQSYAGNDL 496 >gi|333991247|ref|YP_004523861.1| formate hydrogenase HycE [Mycobacterium sp. JDM601] gi|333487215|gb|AEF36607.1| formate hydrogenase HycE [Mycobacterium sp. JDM601] Length=493 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/466 (75%), Positives = 384/466 (83%), Gaps = 1/466 (0%) Query 28 FRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREM 87 FRLALVAAHDD DSLRVVYLFLAG PDRR EL +PA P I SLA LSF AGRFEREM Sbjct 28 FRLALVAAHDDDDSLRVVYLFLAGRPDRRCELTLTIPAQRPSIPSLARLSFQAGRFEREM 87 Query 88 ADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEFTDTGAFPFLAVEGPGVYEIP 146 DLYGI P+ HP+PRRL+RHAHWP DWHPMR DAGPAP+F G FPFL VEG GVYEIP Sbjct 88 QDLYGITPLDHPQPRRLIRHAHWPQDWHPMRNDAGPAPDFVAAGRFPFLNVEGAGVYEIP 147 Query 147 VGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDT 206 VGPVHAGLIEPGHFRFSV GE+++RLKARLWFVHRGIE+LF GR A AV+LAERISGDT Sbjct 148 VGPVHAGLIEPGHFRFSVVGESVLRLKARLWFVHRGIERLFAGRSAVGAVELAERISGDT 207 Query 207 SAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHA 266 SA HALAHSLA+E+ALG+ELP HRLRAL+VELERLYNH ADLGALANDVG+ LANAHA Sbjct 208 SAGHALAHSLAVEEALGVELPDPAHRLRALLVELERLYNHVADLGALANDVGFGLANAHA 267 Query 267 QRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLAEVATLTLANSVV 326 QR RE LLR NA TG RLLR AIR GGV L+ALPD + L ALA D+AE+A LTL +SV+ Sbjct 268 QRAREQLLRINAQTTGDRLLRKAIRPGGVVLQALPDPNRLQALADDVAEIAELTLGHSVI 327 Query 327 YDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIGAPDGDVLARYT 386 YDRFAGT+VL+ DA ALG LGYVARASGL +DAR++HP LP+TE+ A GDVLARYT Sbjct 328 YDRFAGTSVLNRTDAEALGTLGYVARASGLVTDARLDHPITDLPVTEVTATAGDVLARYT 387 Query 387 VRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDG 446 VRRDEFAAS AL + +++ H GPI+ A L +G+GIVEGWRG+IVHRVE DG Sbjct 388 VRRDEFAASVALCRTLIDGHHGPIDVRAQLPGPAGAGNGVGIVEGWRGSIVHRVETGADG 447 Query 447 RITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 ITRAK+VDPSWFNWPALP+AM DTIVPDFPL NKSFN SYAGNDL Sbjct 448 TITRAKIVDPSWFNWPALPLAMTDTIVPDFPLTNKSFNLSYAGNDL 493 >gi|183981673|ref|YP_001849964.1| formate hydrogenase HycE [Mycobacterium marinum M] gi|183174999|gb|ACC40109.1| formate hydrogenase HycE [Mycobacterium marinum M] Length=498 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/498 (71%), Positives = 400/498 (81%), Gaps = 7/498 (1%) Query 2 MSASWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY 61 M+ + VS+ L + +L A+ +RLALVAAHDDGD+LRVVYL +AG PDRRVEL Sbjct 1 MAHKTVSRTVSDAELAESVAELLAEGYRLALVAAHDDGDALRVVYLLVAGQPDRRVELTL 60 Query 62 VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDA 120 A NP + SLA LS PAGRFEREM DLYGI PVGHP+PRRLVRHAHWP DWHPMR DA Sbjct 61 RTGAANPSVPSLAELSIPAGRFEREMMDLYGISPVGHPQPRRLVRHAHWPQDWHPMRRDA 120 Query 121 GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVH 180 G P F G FPF+ VEGPGVYEIPVGPVHAGLIEPGHFRFSV GE+I+RLKARLWFVH Sbjct 121 GDPPPFDAVGRFPFVTVEGPGVYEIPVGPVHAGLIEPGHFRFSVIGESILRLKARLWFVH 180 Query 181 RGIEKLFHGRPATAA---VDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALI 237 RG+EKLF GR A A V+LAERISGD+SAAH+LAH LA+EDALG+++P VHRLRAL+ Sbjct 181 RGVEKLFEGRNALGAREAVELAERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRALL 240 Query 238 VELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL 297 VELERLYNH DLGALANDVG++LANAHAQ IRE +LR N VTGHRLLR A+ GGV L Sbjct 241 VELERLYNHVTDLGALANDVGFALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGVVL 300 Query 298 RALPDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLR 357 + LPD EL A+A ++AE++ LTL NSVVYDRFA TAVLH +DA ALGCLGYVARASG+ Sbjct 301 QELPDPAELHAVAAEVAEISELTLRNSVVYDRFAETAVLHSEDARALGCLGYVARASGIA 360 Query 358 SDARVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLH 417 +DAR++HPT LP+T + A GDVLARYT+RRDEFAAS ALA H+VE+H G +A Sbjct 361 TDARLDHPTAELPVTAVAAGGGDVLARYTIRRDEFAASVALACHLVENHHGRTRFAPPPA 420 Query 418 PVGAPS---SGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVP 474 GA S SG+GIVEGWRG ++HRVE+D GRITR K+VDPSWFNWPALPVAMADTIVP Sbjct 421 ANGARSAVTSGVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNWPALPVAMADTIVP 480 Query 475 DFPLANKSFNQSYAGNDL 492 DFPLANKSFN SYAGNDL Sbjct 481 DFPLANKSFNLSYAGNDL 498 >gi|240169559|ref|ZP_04748218.1| formate hydrogenase HycE [Mycobacterium kansasii ATCC 12478] Length=490 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/490 (70%), Positives = 396/490 (81%), Gaps = 5/490 (1%) Query 7 LRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVPAD 66 +R +VS L + +L A +RLALVAAHDDG++LR+VYL LAG PDRRVEL A Sbjct 2 VRRKVSGDELARSVSELLAAGYRLALVAAHDDGETLRIVYLLLAGQPDRRVELTLTTDAA 61 Query 67 NPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPE 125 P + SL +LS PAGRFEREM DLYG+ P GHP+PRRLVRH HWP +W+PMR +AG P Sbjct 62 TPSVPSLGHLSIPAGRFEREMMDLYGVVPQGHPQPRRLVRHGHWPQEWYPMRRNAGQPPP 121 Query 126 FTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEK 185 F + G FPFL V+GPGVYEIPVGPVHAGLIEPGHFRFSV GE+++RLKARLWFVHRGIEK Sbjct 122 FPNAGRFPFLTVDGPGVYEIPVGPVHAGLIEPGHFRFSVIGESVLRLKARLWFVHRGIEK 181 Query 186 LFHGRPATAA---VDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELER 242 LF GR A A V+LAERISGD++AAH+LA+SLA+E+ALG+ P VHRLRAL+VELER Sbjct 182 LFEGRNALGAMGSVELAERISGDSAAAHSLAYSLAVEEALGLTAPEHVHRLRALLVELER 241 Query 243 LYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPD 302 LYNHA DLGALANDVG++LANAHAQR+RE LLR N VTGHRLLRGAIR GGV L+ LP+ Sbjct 242 LYNHATDLGALANDVGFALANAHAQRVRERLLRINRRVTGHRLLRGAIRPGGVVLQELPE 301 Query 303 TDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARV 362 DEL ALA ++AE++ LTL N+VVYDRFA TAVL DDA +GCLGYVARASG+ +D+R+ Sbjct 302 PDELRALAHEVAEISDLTLRNTVVYDRFADTAVLTRDDAHTVGCLGYVARASGIATDSRL 361 Query 363 EHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAP 422 +HPT LP+T + GDVLARYT+RRDEFAAS ALA ++E H G + A+L Sbjct 362 DHPTTTLPVTAVPGSGGDVLARYTIRRDEFAASVALACTLIEDHRGSLRSNASLTATPG- 420 Query 423 SSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKS 482 +SG+GIVEGWRGT+VHRVE+D GRITR K+VDPSWFNWPALPVAMADTIVPDFPLANKS Sbjct 421 NSGVGIVEGWRGTVVHRVEVDESGRITRCKIVDPSWFNWPALPVAMADTIVPDFPLANKS 480 Query 483 FNQSYAGNDL 492 FN SYAGNDL Sbjct 481 FNLSYAGNDL 490 >gi|258653159|ref|YP_003202315.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Nakamurella multipartita DSM 44233] gi|258556384|gb|ACV79326.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Nakamurella multipartita DSM 44233] Length=506 Score = 548 bits (1412), Expect = 8e-154, Method: Compositional matrix adjust. Identities = 300/492 (61%), Positives = 350/492 (72%), Gaps = 17/492 (3%) Query 16 LIATAEQLWADSFRLALVAAHDD----GDSLRVVYLFLAGYPDRRVELEYVVPADNPEIR 71 LI TA+ L +R+AL+A HDD G +LRVVY+F D+RVEL +P + Sbjct 17 LIPTAQSLLGQGYRIALMAGHDDPAERGGTLRVVYVFTRAGTDQRVELTLRCDPADPHLP 76 Query 72 SLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEFTDT- 129 SLA LSFPAGRFERE+ DL+GI P GHP P RLVRH HWP WHPMR DAGP P F D Sbjct 77 SLAGLSFPAGRFEREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRDAGPPPPFGDVD 136 Query 130 GAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHG 189 G +PF VEGPGVYEIPVGPVHAG+I PGHFRFSV GET++ LKARLWFVHRG+EKLF G Sbjct 137 GPYPFRTVEGPGVYEIPVGPVHAGMIGPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAG 196 Query 190 RPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAAD 249 R A V+LAER+SGDT+ HALA+ A+EDA G+ L R+RA+++ELERLYNH D Sbjct 197 RAVAAGVELAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAILLELERLYNHIGD 256 Query 250 LGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAAL 309 +GALANDVG+ + N HA RIRE LLR N AVTGHRL+RGAI GGV +R LPD ELAA+ Sbjct 257 IGALANDVGHGILNNHALRIRERLLRINDAVTGHRLMRGAIVVGGVRVRVLPDAGELAAV 316 Query 310 AVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVL 369 A D AEV L L +SVV DRF GTA+L A LG LGYVARASG+ DAR +HP L Sbjct 317 AADCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVARASGVAVDARFDHPVPGL 376 Query 370 ---PITEIGA--PDGDVLARYTVRRDEFAAS----AALAQHIVESHTGPIEYAATLHPVG 420 P + DGDV +R+ VR E +S AALA + T P E + Sbjct 377 VYDPAERLSTHPTDGDVASRFLVRAQEIQSSVRMIAALAGQV--DTTAPREVGGSTSSAA 434 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 +G+GIVEGWRGTIVHRVE+D DGR+TR ++VDPS+FNWPALP+AMADTIVPDFPLAN Sbjct 435 GVRAGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPALPLAMADTIVPDFPLAN 494 Query 481 KSFNQSYAGNDL 492 KSFN SYAGNDL Sbjct 495 KSFNLSYAGNDL 506 >gi|331694633|ref|YP_004330872.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326949322|gb|AEA23019.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length=504 Score = 545 bits (1405), Expect = 6e-153, Method: Compositional matrix adjust. Identities = 291/467 (63%), Positives = 341/467 (74%), Gaps = 7/467 (1%) Query 33 VAAHDD---GDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMAD 89 VA HDD G LR V+LF+ D R EL + P + SLA LSFPAGRFERE+ D Sbjct 38 VAGHDDRPSGGGLRTVHLFVQPGADLRTELHVHLDPGRPALPSLAALSFPAGRFERELRD 97 Query 90 LYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEFTD-TGAFPFLAVEGPGVYEIPV 147 L+GI PVGHP PRRLVRH HWP W+PM +DAGPAP F D G +PF VEGPGVYEIPV Sbjct 98 LFGIEPVGHPLPRRLVRHFHWPRGWYPMLSDAGPAPAFGDPDGPYPFRPVEGPGVYEIPV 157 Query 148 GPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTS 207 GPVHAG+IEPGHFRFSV GETI++LKARLWFVHRG+EKL GR A+++A+R SGDT+ Sbjct 158 GPVHAGMIEPGHFRFSVVGETILKLKARLWFVHRGLEKLVEGRCPADALEIAQRASGDTT 217 Query 208 AAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQ 267 H +A AIEDALGI++ + HRLRA+++ELERLYNH DLGAL NDVG+ + NAHAQ Sbjct 218 VGHGVAFCQAIEDALGIDVGPQAHRLRAVLLELERLYNHVNDLGALCNDVGHGVLNAHAQ 277 Query 268 RIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLAEVATLTLANSVVY 327 R+RE LLR N VTGHRLLRGA+ GG A+ ALPD LA +A D+AE+A L L +SVV+ Sbjct 278 RVRERLLRLNDQVTGHRLLRGAVVPGGAAVVALPDPAVLARVAADVAEIADLALGHSVVH 337 Query 328 DRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV--LPITEIGAPDGDVLARY 385 DRFAGTAVL D A+ LG LGYVARASGL DAR +HP ++ LP E GDVLAR+ Sbjct 338 DRFAGTAVLTRDQAAELGTLGYVARASGLAVDARHDHPVLLDELPRAEYSCTGGDVLARF 397 Query 386 TVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVD 445 VRR+E + A + E GP G+ SG+GIVEGWRGTI HRVE+ D Sbjct 398 QVRREEIDLAVATIAALAERLDGPDHRVDPRDRPGSGRSGVGIVEGWRGTITHRVELADD 457 Query 446 GRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 G + R K+VDPS+FNWPALPVA+ADTIVPDFPL NKSFN SYAGNDL Sbjct 458 GTLRRLKIVDPSFFNWPALPVALADTIVPDFPLVNKSFNLSYAGNDL 504 >gi|269128896|ref|YP_003302266.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermomonospora curvata DSM 43183] gi|268313854|gb|ACZ00229.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermomonospora curvata DSM 43183] Length=486 Score = 541 bits (1395), Expect = 8e-152, Method: Compositional matrix adjust. Identities = 294/486 (61%), Positives = 343/486 (71%), Gaps = 9/486 (1%) Query 11 VSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEI 70 V+ L A A +L RLALVAA D VVYLF G VEL VP D+P + Sbjct 6 VTRESLAAHAAELLGSGHRLALVAAVPDPSGFDVVYLFSHGA--DLVELHLPVPGDDPRL 63 Query 71 RSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEFTD- 128 S+A LSFPAGRFEREM DLYGI P HP PRRLVRH HWP W+PMR DAGP P F D Sbjct 64 PSIASLSFPAGRFEREMRDLYGIVPENHPLPRRLVRHHHWPRGWYPMRDDAGPPPAFGDP 123 Query 129 TGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFH 188 G FPF+ VEGPGVYEIPVGPVHAGLIEPGHFRFSV GE+I++LKARLWFVH+GIEKLF Sbjct 124 EGPFPFVTVEGPGVYEIPVGPVHAGLIEPGHFRFSVVGESILKLKARLWFVHKGIEKLFE 183 Query 189 GRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAA 248 GR A ++LAERISGDTS HALA+ A+E AL + +P + R+RAL++ELER+YNH Sbjct 184 GRAPEAGLELAERISGDTSVGHALAYCQAVESALEMAVPPQAARIRALLLELERIYNHVT 243 Query 249 DLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAA 308 DLGAL NDV + + NAHA R+RE+LLR N VTGHRLLRG + GG LRALPDTD L A Sbjct 244 DLGALCNDVAHGILNAHAGRVRESLLRINDQVTGHRLLRGGVVVGGARLRALPDTDALRA 303 Query 309 LAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV 368 + D+AE+ L L +SVV DRFAGTAVL A LG LGYVARASGL DAR + Sbjct 304 IGEDVAEIVALALGHSVVLDRFAGTAVLSTQAARDLGTLGYVARASGLDVDARRDTLEGF 363 Query 369 LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIV-ESHTGPIEYAATL-HPVGAPSSGI 426 P+ GDVLAR+ VR +E AAS + + E +++ A L V P++G+ Sbjct 364 TPVVRT---SGDVLARFQVRAEEIAASIKIITDLAGELDAADLDHVAPLPSDVLGPAAGV 420 Query 427 GIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQS 486 GI EGWRGTIVHRV++D G + R KVVDPS+FNWPALPVA++ IVPDFPL NKSFN S Sbjct 421 GIAEGWRGTIVHRVQLDAAGALARVKVVDPSFFNWPALPVALSGAIVPDFPLVNKSFNLS 480 Query 487 YAGNDL 492 YAGNDL Sbjct 481 YAGNDL 486 >gi|317126121|ref|YP_004100233.1| NADH dehydrogenase subunit C [Intrasporangium calvum DSM 43043] gi|315590209|gb|ADU49506.1| NADH dehydrogenase subunit C [Intrasporangium calvum DSM 43043] Length=516 Score = 522 bits (1344), Expect = 5e-146, Method: Compositional matrix adjust. Identities = 281/486 (58%), Positives = 336/486 (70%), Gaps = 4/486 (0%) Query 11 VSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEI 70 V+ L +L FRL LVAAH+D D RVVYLFLAG+PDRRVEL D P + Sbjct 31 VTSDTLGTRTTELLDSGFRLGLVAAHEDEDRFRVVYLFLAGHPDRRVELVLTTDRDAPSV 90 Query 71 RSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPD-WHPMRTDAGPAPEF-TD 128 +LA LSFPAGRFEREM DLYGI P+ HP PRRLVRH HWP W+PMR DAG P F ++ Sbjct 91 PTLAGLSFPAGRFEREMRDLYGIIPLDHPLPRRLVRHQHWPQGWYPMRRDAGAPPAFGSE 150 Query 129 TGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFH 188 +PF V+GPGVYEIPVGP+HAGLIEPGHFRFSV GETI++LKARLWFVHRGIEK Sbjct 151 DQPYPFATVQGPGVYEIPVGPIHAGLIEPGHFRFSVVGETILKLKARLWFVHRGIEKHAE 210 Query 189 GRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAA 248 GR + A+ L ER++GDTS HALA SLA+E+AL +P +RA+++ELERLYNH Sbjct 211 GRTVSEALPLMERVAGDTSVGHALAFSLAVEEALDWAVPAPAQLIRAVLLELERLYNHIT 270 Query 249 DLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAA 308 D+GAL NDVG L NAHA +RE LLR NA TGHRLLRGAI GG L+ LP + Sbjct 271 DIGALCNDVGQGLLNAHALTLRERLLRLNAETTGHRLLRGAIVPGGARLQTLPTAAAIDH 330 Query 309 LAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTI- 367 + + + TL L +SVV DRF TAVL D A LG LGYVARASGLR DAR +HP Sbjct 331 IDAEADRIVTLALGHSVVRDRFTDTAVLPTDQARDLGTLGYVARASGLRIDARHDHPFTE 390 Query 368 -VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGI 426 + +GDV+AR+ +R +EF ASA L + ++ G L P+ +SG+ Sbjct 391 ATTRAQLVTKSEGDVMARFLMRAEEFHASALLVKDLLALVGGGDVPLGKLSPIAGQTSGV 450 Query 427 GIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQS 486 G+VEGWRGTI HR+E+ D I R K+VDPS+ NWPA+PV++ DTIVPDFPL NKSFN S Sbjct 451 GLVEGWRGTIAHRIELAPDKTIRRLKIVDPSFLNWPAVPVSLTDTIVPDFPLTNKSFNLS 510 Query 487 YAGNDL 492 YAGNDL Sbjct 511 YAGNDL 516 >gi|336178230|ref|YP_004583605.1| NADH dehydrogenase (quinone) [Frankia symbiont of Datisca glomerata] gi|334859210|gb|AEH09684.1| NADH dehydrogenase (quinone) [Frankia symbiont of Datisca glomerata] Length=514 Score = 514 bits (1325), Expect = 9e-144, Method: Compositional matrix adjust. Identities = 289/485 (60%), Positives = 341/485 (71%), Gaps = 21/485 (4%) Query 22 QLWADSFRLALVAAHDDG------DSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAY 75 ++ AD RLALVAAH DG ++RVVYLF+ G PD RVEL + D P + SLA+ Sbjct 37 EMLADGHRLALVAAHHDGADAPGGPAIRVVYLFVKGPPDSRVELHVRLDPDTPALPSLAH 96 Query 76 LSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEFTDT-GAFP 133 LSFPAGRFEREM DL+GI P+ HP PRRLVRH HWP W+PMR DAGP P F ++ G FP Sbjct 97 LSFPAGRFEREMRDLHGIVPLNHPLPRRLVRHPHWPRGWYPMRPDAGPPPPFAESEGPFP 156 Query 134 FLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPAT 193 FL VEG GVYEIPVGPVHAGLIEPGHFRFSV GETI++LKARLWFVH+GIEKLF R Sbjct 157 FLTVEGDGVYEIPVGPVHAGLIEPGHFRFSVVGETILKLKARLWFVHKGIEKLFERRDVE 216 Query 194 AAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGAL 253 + LAERISGDT+ HALA+ LA+E+A +P R RAL++ELERL+NH ADLGAL Sbjct 217 RGLPLAERISGDTAVGHALAYCLAVEEATATAVPEPARRARALLLELERLHNHVADLGAL 276 Query 254 ANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDL 313 NDVG+ + NA AQR+RE LLR N VTGHRLLRG + GG A+RALPD + A+ D+ Sbjct 277 CNDVGHGILNAQAQRVREQLLRLNQEVTGHRLLRGGVIPGGAAVRALPDPARIRAIGDDI 336 Query 314 AEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHP------TI 367 ++ L L +S V DRF G A L A LGCLGYVARASG+R DAR HP + Sbjct 337 RDIVALALGHSTVRDRFTGAARLDGRAARDLGCLGYVARASGVRVDARQAHPFLDYGDAL 396 Query 368 VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGIG 427 +P+ GDVLAR+ VR DE S AL + + T + A + +G SG+G Sbjct 397 TVPVHT----SGDVLARFLVRADEIDVSLALVEKLAAGLTPGVTRAESGAGLG---SGVG 449 Query 428 IVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSY 487 IVEGWRGTI RVE+ D + R KVVDPS+FNWPALP+A+ADTIVPDFPL NKSFN SY Sbjct 450 IVEGWRGTITTRVELAPDRALARVKVVDPSFFNWPALPIALADTIVPDFPLTNKSFNLSY 509 Query 488 AGNDL 492 AGNDL Sbjct 510 AGNDL 514 >gi|119718684|ref|YP_925649.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Nocardioides sp. JS614] gi|119539345|gb|ABL83962.1| NADH dehydrogenase subunit C [Nocardioides sp. JS614] Length=391 Score = 461 bits (1185), Expect = 2e-127, Method: Compositional matrix adjust. Identities = 255/396 (65%), Positives = 295/396 (75%), Gaps = 13/396 (3%) Query 105 VRHAHWP-DWHPMRTDAGPAPEF-TDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRF 162 +RH HWP W+PMR DAGP P F D GAFPFL VEG GVYEIPVGPVHAG+IEPGHFRF Sbjct 1 MRHGHWPRGWYPMRRDAGPPPPFDADIGAFPFLEVEGDGVYEIPVGPVHAGMIEPGHFRF 60 Query 163 SVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDAL 222 SV GETI+RLKARLWFVHRG+EKLF GR AV+LAERISGDT+ H A + A+EDAL Sbjct 61 SVIGETILRLKARLWFVHRGVEKLFEGRRPEDAVELAERISGDTAVGHTTAFATAVEDAL 120 Query 223 GIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTG 282 GIE+P RAL++ELER++NHAADLGALANDVGY + N HA RIRE+LLR N A TG Sbjct 121 GIEVPERDRLGRALLLELERMHNHAADLGALANDVGYGIVNTHALRIRESLLRLNKATTG 180 Query 283 HRLLRGAIRAGGVALRALPDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDAS 342 HRLLRG + GG + ALPD L A+A ++AE+A +TL NS V DRF GTAVL + A Sbjct 181 HRLLRGGVGIGGTRIDALPDPAALEAVAAEVAELAEITLGNSTVRDRFTGTAVLAAESAR 240 Query 343 ALGCLGYVARASGLRSDARVEHPTIVLP-----ITEIGAPDGDVLARYTVRRDEFAASAA 397 LG LGYVARASG+ DAR +HP + L + E G GDVLARY VR E A SAA Sbjct 241 DLGTLGYVARASGIDRDARRDHPFVDLGDRFHVVVETG---GDVLARYRVRVREIAVSAA 297 Query 398 LAQHIVES-HTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDP 456 +A +V +G + T P G G+G+VEGWRGTI HRVEID GR++R K+VDP Sbjct 298 VAGDLVRRLSSGTGVDSHTSAPGGG--HGLGLVEGWRGTIAHRVEIDPSGRLSRVKIVDP 355 Query 457 SWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 S+FNWPALP+A+ADTIVPDFPLANKSFNQSYAGNDL Sbjct 356 SFFNWPALPIALADTIVPDFPLANKSFNQSYAGNDL 391 >gi|258593564|emb|CBE69905.1| Hydrogenase, large subunit-like protein (HycE-like) [NC10 bacterium 'Dutch sediment'] Length=527 Score = 376 bits (966), Expect = 4e-102, Method: Compositional matrix adjust. Identities = 221/434 (51%), Positives = 271/434 (63%), Gaps = 17/434 (3%) Query 72 SLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPD-WHPMRTDAGPAPEFTDTG 130 SLA + A RFEREM DL+G+ P GHP RRL H WP +HP+ DA P F D G Sbjct 98 SLATRWYLASRFEREMHDLFGLLPTGHPDLRRLPLHQFWPAAYHPLLKDAPSPPAFADDG 157 Query 131 A-FPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHG 189 FPF VEG G++EI VGPVHAG+IEPGHFRFSV GETIV L++RL+FVH+GIE+LF Sbjct 158 TPFPFRRVEGEGIHEITVGPVHAGIIEPGHFRFSVEGETIVNLESRLYFVHKGIERLFET 217 Query 190 RPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAAD 249 P V+LAERISGD+S AHALA A+E +++P LR ++ELERLYNH AD Sbjct 218 VPLIRGVELAERISGDSSVAHALAFCQALESLTALQIPPRAAYLRVALLELERLYNHIAD 277 Query 250 LGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL----RALPDTDE 305 +GA+ D G+++AN HA RIRE++LR NA + GHRLLRG + AGGV + D E Sbjct 278 VGAICTDTGFAVANTHAMRIREDILRLNARLAGHRLLRGTLIAGGVRCDFTAEQIADARE 337 Query 306 LAALAV-DLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEH 364 AV D EV + L N +V DR GT L A L +G ARASG+ DAR +H Sbjct 338 TVRRAVSDFDEVVEIALNNGLVLDRLHGTGHLSNQTARELQVVGPAARASGIDRDARRDH 397 Query 365 PTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPI---EYAATLHP 418 P LP +GDV AR VR +E A A H++ G I + +A L Sbjct 398 PFAAYADLPPHVPVYSEGDVWARLMVRVEE----AREAAHLIMRALGEIPEGKVSAPLPA 453 Query 419 VGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPL 478 + A +SG G+VEGWRG I H + R+TRAK+ DPS+ NWPAL A+ IVPDFPL Sbjct 454 LPAGASGFGLVEGWRGPIWHWLVAGEQNRLTRAKIKDPSFANWPALHYAILKNIVPDFPL 513 Query 479 ANKSFNQSYAGNDL 492 NKSFN SYAGNDL Sbjct 514 VNKSFNLSYAGNDL 527 >gi|182414280|ref|YP_001819346.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] gi|177841494|gb|ACB75746.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] Length=531 Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 205/482 (43%), Positives = 263/482 (55%), Gaps = 26/482 (5%) Query 29 RLALVAAHDD---GDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFER 85 RL V A D G V YL+ V + VVPA+ PE+ SL ER Sbjct 56 RLVSVFAEDGRAGGAGFYVYYLYAVDAAHGFVLVRVVVPAERPELISLTNAVHAVNWQER 115 Query 86 EMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTD---AGPAPEFTDTGAFPFLAVEGPGV 142 E+ DL+G++ VGHP PRR V H WP+ P+R D P F+ F V G GV Sbjct 116 EIQDLFGLKLVGHPNPRRCVLHDDWPEVFPLRKDFDLQTQLPPFSGE-RHKFREVAGEGV 174 Query 143 YEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 202 +++PVGPVHAG+IEPGHF FSVAGE ++ L+ R+++VH+G EKLF P T V LAE I Sbjct 175 FQVPVGPVHAGVIEPGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFESLPITHGVRLAESI 234 Query 203 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 262 SGD++ AHA A AIE A G+ P LR L +ELER+ NH AD+GA+ DV + A Sbjct 235 SGDSAFAHATAFCHAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTA 294 Query 263 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAV-------DLAE 315 HA R++E +LR N +TG+RLLRG GGV R D+ +L ALA + Sbjct 295 QMHALRLKEQVLRWNEQLTGNRLLRGMACLGGV--RFDFDSAQLDALAAFVDTLEQQFKD 352 Query 316 VATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIG 375 + L ++S DR T VL P A LG +G RASG+ D R + PT + Sbjct 353 LVELIRSHSGTRDRLETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFT 412 Query 376 AP---DGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVG---APSSGIGIV 429 P +GDV R VRR+E S + + ++ G A PVG A +G V Sbjct 413 VPVFTEGDVQRRMVVRREELFQSLGIIRQVLAKMPG----GAIATPVGDVPADRIALGYV 468 Query 430 EGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAG 489 EGWRG I H V R+ R K+ DPS NWPAL A+ I+PDFP+ NKSFN SY+G Sbjct 469 EGWRGEIFHWVHTAPGNRLARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSG 528 Query 490 ND 491 D Sbjct 529 TD 530 >gi|302039527|ref|YP_003799849.1| putative formate hydrogenlyase large subunit [Candidatus Nitrospira defluvii] gi|300607591|emb|CBK43924.1| putative Formate hydrogenlyase, large subunit [Candidatus Nitrospira defluvii] Length=530 Score = 325 bits (834), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 199/463 (43%), Positives = 261/463 (57%), Gaps = 18/463 (3%) Query 44 VVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRR 103 + YLF + L + D E S+ A +ERE+ DL+G+ P+GHP RR Sbjct 72 LCYLFTLAERKDWLLLATDLHGDEREFPSITPHLHAAKWYEREIRDLFGLVPIGHPDLRR 131 Query 104 LVRHAHWPDW-HPMRTDAGPAPEFTD--TGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHF 160 LVRH HWP HP++ D P G + F + G GV+E+PVGP+HAG+IEPGHF Sbjct 132 LVRHEHWPKGSHPLKRDF-PWDRVLGRVQGEYAFRKIHGEGVFEVPVGPIHAGIIEPGHF 190 Query 161 RFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIED 220 RFSVAGE I++L+ R ++ HRG+EKLF + T AV L+ER+SGDTS H+LA+ A+E Sbjct 191 RFSVAGEPIMQLEVRHFWKHRGVEKLFEQQQLTEAVPLSERVSGDTSVGHSLAYCQAVEM 250 Query 221 ALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAV 280 G+E+ LR L +ELERL+NH D+GA+ ND Y+LA+AH R++E L++ N + Sbjct 251 LQGVEVSPRARYLRTLFLELERLHNHIGDVGAICNDTAYALAHAHCGRMKEQLMQLNDRL 310 Query 281 TGHRLLRGAIRAGGVALR----ALPDTD-ELAALAVDLAEVATLTLANSVVYDRFAGTAV 335 TG R LRG GGVAL L + EL AL D +++ + AN+ + +R T + Sbjct 311 TGSRFLRGVNCVGGVALDLSGLQLAQVEVELNALEQDFSDIEKIVFANASLTERLENTGI 370 Query 336 LHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIGAP---DGDVLARYTVRRDEF 392 L A +G V RASG+ D R + P + + GDV AR VR DE Sbjct 371 LTEGIAWDHAVIGVVGRASGIDRDLRRDRPFAAYDVLQPRVALYRYGDVRARMRVRLDEI 430 Query 393 AASAALAQHIVESHTGPIEYAATLHPVGAPSSG---IGIVEGWRGTIVHRVEIDVDGRIT 449 S L I E G P+ P G + VEGWRG I++ V GRI Sbjct 431 HESIRL---IREVRRGLPLGRLVSRPMHQPQPGAWALSAVEGWRGEILYVVMAGDAGRIH 487 Query 450 RAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 R KV DPS+ NWPA+ A IVPDFPL NKSFN SYAGNDL Sbjct 488 RCKVRDPSFVNWPAIQWAALGNIVPDFPLINKSFNLSYAGNDL 530 >gi|343917167|gb|EGV27976.1| NADH dehydrogenase (quinone) [Thiorhodococcus drewsii AZ1] Length=537 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 191/447 (43%), Positives = 247/447 (56%), Gaps = 14/447 (3%) Query 59 LEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMR 117 LE VP D P I S R ER DL G+ GHP RR RH WP D P+R Sbjct 92 LETQVPLDRPTIDSHTPTYPGLDRLERHAQDLTGLSFTGHPDGRRWTRHQAWPEDRFPLR 151 Query 118 TD---AGPAPEFTDTGA-FPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLK 173 +D +G T A +PF+ V+G GVYEIPVGPVHAG+IEPGHFRF GE ++RL+ Sbjct 152 SDFPLSGETKARTPADADYPFVRVQGAGVYEIPVGPVHAGIIEPGHFRFQAMGEEVLRLE 211 Query 174 ARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRL 233 RL + H+GIEKL GR A+ LA R+SGD++ +HA A A+E A G E+P L Sbjct 212 QRLGYTHKGIEKLAVGRDASGLARLAGRVSGDSTVSHAWAACQAMERAAGCEVPPRALFL 271 Query 234 RALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAG 293 RAL+ E ER+ NH D+GA+ NDVG++ A A R+RE RR+ A+ GHR + A+ G Sbjct 272 RALMAERERIANHLGDIGAICNDVGFAFALAQCGRLREQWQRRSQALFGHRFMMDAVIPG 331 Query 294 GVALRALPDTDEL-----AALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLG 348 GV P+ + AAL + + + + + DR T +L +DA ALGC G Sbjct 332 GVVQDLTPEGFQQLRLDHAALHKVIEPLFDVIQDHPSLDDRLMRTGILSAEDARALGCTG 391 Query 349 YVARASGLRSDARVEHPTIVLPITEIGAP---DGDVLARYTVRRDEFAASAALAQHIVES 405 YV +ASG D R + P + P GDV AR VR E AS + ++++ Sbjct 392 YVGKASGQSFDVRRDSPYAPYDQLRVEVPAETAGDVSARVAVRIAEVRASLWMLDRLLDA 451 Query 406 HTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALP 465 E AA P + G+GI++GWRG I+ V D RI R DPSWF WPAL Sbjct 452 -LPEGEIAAPFSPPPPGAMGLGIIDGWRGEILAFVRFSTDSRIARYFPRDPSWFTWPALE 510 Query 466 VAMADTIVPDFPLANKSFNQSYAGNDL 492 + IVPDFP+ NKS N SY+G DL Sbjct 511 RLILGNIVPDFPVCNKSVNGSYSGEDL 537 >gi|344943806|ref|ZP_08783092.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methylobacter tundripaludum SV96] gi|344259464|gb|EGW19737.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methylobacter tundripaludum SV96] Length=524 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 182/449 (41%), Positives = 238/449 (54%), Gaps = 18/449 (4%) Query 59 LEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDW-HPMR 117 L ++ NPE+ S A + A R ER D++GI+ VGHP RR RH W + +P+R Sbjct 79 LRTIIDDSNPELPSQATVYPAANRSERHTQDMFGIKFVGHPDNRRWTRHQAWIEKNYPLR 138 Query 118 TD----AGPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLK 173 D P +PF+ G G YEIPVGPVHAG+IEPGHFRF GE I+ L+ Sbjct 139 KDFPVQGTPVGITPPDMHYPFIKSHGAGTYEIPVGPVHAGIIEPGHFRFQAVGELILNLE 198 Query 174 ARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRL 233 RL +VH+GIEK+ GR + LA R+SGDT+ H A A+E G+ +P + Sbjct 199 ERLGYVHKGIEKIAEGREPESLARLAGRVSGDTTVGHCWAACRAMEQTAGVIIPPRAALI 258 Query 234 RALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAG 293 R ++ E ER+ NH D+GA+ NDV + A R+RE LR NA V GHRLL I G Sbjct 259 RGILAERERIANHMGDIGAICNDVAFVFAQMQFTRLRELWLRTNATVFGHRLLMDKIVPG 318 Query 294 GVALRALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLG 348 GVA ++ E+ L +LAEV NS + DR L A+A G LG Sbjct 319 GVACDLSGESCALIKKEITELRKELAEVILALDLNSSLEDRLYTAGFLSEQTAAAFGTLG 378 Query 349 YVARASGLRSDARVEHPTIVLPITEIGAP-----DGDVLARYTVRRDEFAASAALAQHIV 403 YV RASG D R + P P ++ GD+ +R VR E A+ L + + Sbjct 379 YVGRASGQDKDVRRDTP--YAPYDQVTVKVALETQGDIASRLWVRYKEIRAALRLLEEFI 436 Query 404 ESHTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPA 463 + E + A S G+GIVEGWRG I+ + D D +I R DPS NWPA Sbjct 437 DRLVAG-ELCSEWRTPAAGSEGLGIVEGWRGEIISYIRFDADNKIARFYPRDPSQLNWPA 495 Query 464 LPVAMADTIVPDFPLANKSFNQSYAGNDL 492 L + + IVPDFP+ NKS N SY+GNDL Sbjct 496 LEKLVLNNIVPDFPVCNKSLNGSYSGNDL 524 >gi|147919460|ref|YP_686800.1| hydrogenase, large subunit-like protein (HycE-like) [uncultured methanogenic archaeon RC-I] gi|110622196|emb|CAJ37474.1| hydrogenase, large subunit-like protein (HycE-like) [uncultured methanogenic archaeon RC-I] Length=524 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 180/446 (41%), Positives = 249/446 (56%), Gaps = 13/446 (2%) Query 57 VELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHP 115 V +E VP +SL + + A FERE+AD++G+ PVGHP R LV + WP D+HP Sbjct 82 VSIEAEVPESPGTFQSLTPMIYSANWFEREIADMFGLTPVGHPDLRPLVLYDTWPEDYHP 141 Query 116 MRTDAGPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKAR 175 +R DA P DT +P+ VEG GV+EIPVGPVHAG+IEPGHFRFSVAGE ++ L+ R Sbjct 142 LRKDAPGRPPKVDT-YYPYHRVEGEGVFEIPVGPVHAGVIEPGHFRFSVAGEPVLMLEIR 200 Query 176 LWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRA 235 + +VH+GIEK+ V L+ER SGD AH+ A+ A+E GIE+P +R Sbjct 201 MGYVHKGIEKISESMTYDKGVFLSERTSGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRT 260 Query 236 LIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGV 295 + +E+ER+YNH D+G ++ D Y++ HA +RE +L+ N +TG RLLR + GGV Sbjct 261 VFLEMERIYNHLGDVGGISLDTAYNVGAQHAYILRERMLQLNECITGSRLLRSVNKIGGV 320 Query 296 ALRALPDTDELAALAV-----DLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYV 350 + E A+ D + L + + DR T L + A +L +G Sbjct 321 RQDLTREDIEKIRTAIIKAKLDFKDFVDLVNRQTSILDRTETTGKLPLEAAVSLNIVGPG 380 Query 351 ARASGLRSDARVEHPTIVLPITEIGA---PDGDVLARYTVRRDEFAASAALAQHIVES-H 406 ARASG+ D R +HP +GDV AR V+ E S ++ + ++ Sbjct 381 ARASGVSRDVRRDHPYAAYSDLNFAVHIRKEGDVNARMQVKIGEIYESMSIIEQALDRLP 440 Query 407 TGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPV 466 G I A P G GI +VE RG ++H + + R R K+ DPS+ NW A+ + Sbjct 441 AGKIRAATGNIPQG--RVGISLVEAPRGELLHWILSGENDRPFRHKIRDPSFCNWLAMEI 498 Query 467 AMADTIVPDFPLANKSFNQSYAGNDL 492 A IVPDFPL NKSFN SY+GNDL Sbjct 499 ATPGNIVPDFPLVNKSFNLSYSGNDL 524 >gi|91202884|emb|CAJ72523.1| similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (chain E) [Candidatus Kuenenia stuttgartiensis] Length=531 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 174/463 (38%), Positives = 246/463 (54%), Gaps = 14/463 (3%) Query 42 LRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKP 101 ++ Y+F D + + V PE S+ A +ERE+ D++G+ PVGHP+P Sbjct 71 FKIYYVFSLQREDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMFGLIPVGHPRP 130 Query 102 RRLVRHAHWP-DWHPMRTDAGPAPEFTD-TGAFPFLAVEGPGVYEIPVGPVHAGLIEPGH 159 LV H ++P + +P+R D PF VEG GV+EIPVGP+HAG+IEPGH Sbjct 131 ETLVLHGNFPENTYPLRKDFDIQTRIPHLESKLPFFRVEGEGVFEIPVGPIHAGVIEPGH 190 Query 160 FRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIE 219 FRFS G++I L A+L+F H+G EK+F P T A+ LAERI G +A+HA + AIE Sbjct 191 FRFSAVGDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIE 250 Query 220 DALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAA 279 IE+P +R +++ELER+YNH D+G + + L AH RIRE L + N Sbjct 251 KVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRIREYLQQLNET 310 Query 280 VTGHRLLRGAIRAGGVALRALPDTDE-----LAALAVDLAEVATLTLANSVVYDRFAGTA 334 +TG+R LRG + GGV D ++ L + D ++ + +S + DR T Sbjct 311 ITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMFKSSSLLDRLETTG 370 Query 335 VLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIGAP----DGDVLARYTVRRD 390 L + A LG +G ARASG+ D RV HP + P +GDVLAR VR D Sbjct 371 RLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHYEGDVLARIRVRVD 430 Query 391 EFAASAALAQHIVES-HTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRIT 449 E S + + E GP++ + + + VE RG ++ + ++ Sbjct 431 EVYQSIYIIEQCFEKMRPGPLK--TPIKELPPYKQALSYVESPRGENIYWIMTAPGNKLF 488 Query 450 RAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 R KV PS+ NWPA+P A+ IVPDFPL NKSF Y+ DL Sbjct 489 RYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTDL 531 >gi|91779763|ref|YP_554971.1| putative formate hydrogenlyase subunit [Burkholderia xenovorans LB400] gi|91692423|gb|ABE35621.1| putative formate hydrogenlyase subunit [Burkholderia xenovorans LB400] Length=515 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 192/506 (38%), Positives = 265/506 (53%), Gaps = 40/506 (7%) Query 5 SWLRHRVSERGLIATAEQLWAD-----SFRLALVAAHDDGDSLRVVYLFLAGYPDRRVEL 59 +W+R + R LW + +F ++ A +DG + GYPD L Sbjct 32 TWMRTARTARENGGRLISLWGNEEATGTFAISAAYALEDGILWLEAPVAAQGYPD----L 87 Query 60 EYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRT 118 V P A R +R + DL G+R +G R + H +WP D+HP++ Sbjct 88 STVFPC--------------AARMQRAVFDLLGLRAIGAADSRPWLNHGNWPRDYHPLQK 133 Query 119 DAGPAPEF-TDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLW 177 + A F + +PF+ V+G GV+EI VGP+HAG+IEPGHFRFSV GE ++RL+ R Sbjct 134 LSSGAERFQSGEEDYPFVRVDGDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERFG 193 Query 178 FVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALI 237 + HRGIEKLF P LA RI+GDT+ A + A+ +A+E AL +P LRAL+ Sbjct 194 YAHRGIEKLFERTPLLLGYRLAGRIAGDTTVAFSWAYCMAVERALDGRIPPRAQWLRALL 253 Query 238 VELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL 297 +E ER+ NH DLGAL ND G++ A R++E+ LR N GHR L I GGV+ Sbjct 254 LERERIANHLGDLGALGNDAGFAYGLAQFSRLKEDWLRVNDQAFGHRYLMDRIVPGGVSK 313 Query 298 RALPDTDELAALAVDLAEVATLTLANSVVY-------DRFAGTAVLHPDDASALGCLGYV 350 D+ + A+ + T +Y DRFAG+ +L + A G V Sbjct 314 DI--DSRFITAIQTQCERIDTEVRVMQRIYEDQSGLQDRFAGSGILSAEVAEHFSVCGLV 371 Query 351 ARASGLRSDARVEHPTI---VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESH- 406 ARAS ++D RV+HP +P+ + GDV AR VR E S L Q ++ Sbjct 372 ARASSRKTDVRVDHPYAPYHEVPVQMVSDARGDVAARVAVRFGEIYESIRLIQTLLAGLP 431 Query 407 TGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPV 466 G I L G+P+ G+G +EGWRG + +E G ++R DPSW NWPAL Sbjct 432 EGDI--VTVLEQRGSPARGVGWIEGWRGDVFVALETGAGGTLSRCHCHDPSWQNWPALEH 489 Query 467 AMADTIVPDFPLANKSFNQSYAGNDL 492 A+ IVPDFPL NKSFN +YAG+DL Sbjct 490 AIIGNIVPDFPLINKSFNLNYAGHDL 515 >gi|333983291|ref|YP_004512501.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methylomonas methanica MC09] gi|333807332|gb|AEG00002.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Methylomonas methanica MC09] Length=527 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 190/498 (39%), Positives = 257/498 (52%), Gaps = 22/498 (4%) Query 11 VSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEI 70 +++R AE R + A D D V LF R + + + + PE+ Sbjct 36 IADRHWQKLAESAMTHQLRWSAGWAEQDDDRFIVHALFEK--QGRYLHVRTSIDLNTPEL 93 Query 71 RSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPD-WHPMRT----DAGPAPE 125 S A + A R ER D++GI+ GHP R RH W +P+R P Sbjct 94 PSQAGVYPAANRSERHTQDMFGIKFTGHPDNRPWTRHKAWDKHQYPLRKTFAVQGQPEAV 153 Query 126 FTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEK 185 + F+ G G YEIPVGPVHAG+IEPGHFRF GE I+ L+ RL +VH+GIEK Sbjct 154 TPPDMDYAFVKSHGAGTYEIPVGPVHAGIIEPGHFRFQAVGELILNLEERLGYVHKGIEK 213 Query 186 LFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYN 245 + GR + LA R+SGDT+ +HA A +A+E A I +P LR ++ E ER+ N Sbjct 214 IAEGRTPESLARLAGRVSGDTTVSHAWAACMAMEQAANIRIPPRAALLRGILAERERVAN 273 Query 246 HAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDE 305 H D+GA+ NDV ++ A R+RE+ LR A V GHRLL + GGV + DTD Sbjct 274 HLGDIGAICNDVAFTFAQIQFSRLREDWLRTQAKVFGHRLLMDCVIPGGVK-SDVSDTDC 332 Query 306 LAA------LAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSD 359 A L +L+++ T NS + DR L D A+ G +GYV RASG D Sbjct 333 TALNADNLRLRKELSDIITTLDLNSSLEDRLYTAGFLSNDIAAGFGTVGYVGRASGQDFD 392 Query 360 ARVEHPTIVLPITEIGAP-----DGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAA 414 R + P P ++ GD+ +R+ +R E AS L + + + P E AA Sbjct 393 VRRDAP--YPPYDQVTVKVALENQGDIASRFWIRYKEIMASMKLIEQFM-ALLQPGEIAA 449 Query 415 TLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVP 474 A S+G+GIV+GWRG IV V D +I+R DPS NWPAL + + IVP Sbjct 450 AWRVPAAGSTGLGIVDGWRGEIVSFVAFGADNKISRFYPRDPSQLNWPALEKLVLNNIVP 509 Query 475 DFPLANKSFNQSYAGNDL 492 DFP+ NKS N SY+GNDL Sbjct 510 DFPVCNKSLNGSYSGNDL 527 >gi|296161107|ref|ZP_06843917.1| putative formate hydrogenlyase subunit [Burkholderia sp. Ch1-1] gi|295888630|gb|EFG68438.1| putative formate hydrogenlyase subunit [Burkholderia sp. Ch1-1] Length=515 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 177/428 (42%), Positives = 241/428 (57%), Gaps = 16/428 (3%) Query 78 FP-AGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEF-TDTGAFPF 134 FP A R +R + DL G+R +G R + H +WP D+HP++ + F + +PF Sbjct 91 FPCAARMQRAVFDLLGLRAIGAADSRPWLNHGNWPRDYHPLQKLSSGTERFHSGEEDYPF 150 Query 135 LAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATA 194 + V+G GV+EI VGP+HAG+IEPGHFRFSV GE ++RL+ RL + HRGIEKLF P Sbjct 151 VRVDGDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIEKLFERTPLLM 210 Query 195 AVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALA 254 LA RI+GDT+ A + A+ +A+E AL +P LRAL++E ER+ NH DLGAL Sbjct 211 GHRLAGRIAGDTTVAFSWAYCMAVERALDGRIPPRAQWLRALMLERERIANHLGDLGALG 270 Query 255 NDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLA 314 ND G++ A R++E+ LR N GHR L I GGV+ D + A+ Sbjct 271 NDAGFAYGLAQFSRLKEDWLRVNDEAFGHRYLMDRIVPGGVSTDI--DVRFITAMQTQCE 328 Query 315 EVATLTLANSVVY-------DRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTI 367 + T +Y DRFAG+ +L D A G V RASG +SD RV+HP Sbjct 329 RIDTEVRVMQRIYEDQSGLQDRFAGSGILSADVAEHFSVCGLVGRASGRKSDVRVDHPYA 388 Query 368 ---VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSS 424 +P+ + GDV AR VR E S L ++ + + A L +P+ Sbjct 389 PYHEVPVQMVSDGRGDVAARVAVRFGEIYESIQLILTLL-AGLPEGDVIAALEQRESPAR 447 Query 425 GIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFN 484 G+G +EGWRG + ++ DG ++R DPSW NWPAL A+ IVPDFPL NKSFN Sbjct 448 GVGWIEGWRGDVFVALQTGADGTLSRCHCHDPSWQNWPALEHAIIGNIVPDFPLINKSFN 507 Query 485 QSYAGNDL 492 +YAG+DL Sbjct 508 LNYAGHDL 515 >gi|154244128|ref|YP_001415086.1| NADH-ubiquinone oxidoreductase chain 49kDa [Xanthobacter autotrophicus Py2] gi|154158213|gb|ABS65429.1| NADH-ubiquinone oxidoreductase chain 49kDa [Xanthobacter autotrophicus Py2] Length=501 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 186/425 (44%), Positives = 245/425 (58%), Gaps = 20/425 (4%) Query 79 PAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAPEFTDTGAFPFLAVE 138 PA R ER + DLYG+ P G P R + H W P+ + PE A+ FLA E Sbjct 86 PAARLERTVRDLYGLVPEGAPDERPWLDHGRWGTRQPLGANLPAEPE---GDAYLFLAAE 142 Query 139 GPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDL 198 G G+++IPVGPVHAG+IEPGHFRFS GET+VRL+ARL +VH+GIE+L G A L Sbjct 143 GEGLHQIPVGPVHAGIIEPGHFRFSCYGETVVRLEARLGYVHKGIERLMAGADVAQAARL 202 Query 199 AERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVG 258 A R SGD++ A+ALA S A+E A G+ +P H LR ++ ELERL NH D+GA+ ND Sbjct 203 AGRQSGDSTVAYALAFSRAVEAARGVGVPARAHALRGVMAELERLANHLGDIGAICNDAA 262 Query 259 YSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLAEV-- 316 ++L AH +RE +LR A GHRL+ + GGVA D ++A+ V ++EV Sbjct 263 FALMLAHCGVLREKVLRVCARAFGHRLMMDGVIPGGVA--GDLARDGVSAIRVLVSEVRA 320 Query 317 ---ATLTLANSV--VYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR---VEHPTIV 368 A + L ++ + DR GT PD G G+V RASG DAR P Sbjct 321 AFPALVELYDNTASLQDRTVGTGFTRPDYVRQFGAGGFVGRASGRPFDARRALAYPPYDR 380 Query 369 LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTGPIEYAATLHPVGAPSSGIG 427 LP + +GDV AR VR E S L ++++ GP+ A P G P G+ Sbjct 381 LPFEVVVRSEGDVNARIWVRIREVEQSLGLIVRLLDTLPDGPV---AVEVPAG-PGEGLA 436 Query 428 IVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSY 487 +VEG+RG ++ V ++ DGR+ RA + DPSWF WP L A+ IV DFPL NKSFN SY Sbjct 437 VVEGFRGDVLAFVALEADGRVRRAHLRDPSWFQWPLLETAIEGNIVADFPLCNKSFNCSY 496 Query 488 AGNDL 492 +G DL Sbjct 497 SGVDL 501 >gi|288818461|ref|YP_003432809.1| NADH dehydrogenase/hydrogenase large subunit [Hydrogenobacter thermophilus TK-6] gi|288787861|dbj|BAI69608.1| NADH dehydrogenase/hydrogenase large subunit [Hydrogenobacter thermophilus TK-6] gi|308752051|gb|ADO45534.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Hydrogenobacter thermophilus TK-6] Length=494 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 185/506 (37%), Positives = 264/506 (53%), Gaps = 32/506 (6%) Query 6 WLRHRVSERGLIATAEQLWADSFRLALVAAHDD---GDSLRVVYLFLAGYPDRRVE---- 58 +L +SE + E + L + D+ G+ + Y F R E Sbjct 2 YLEEEISETEIYGKVESIIKKGGYLLSIVCSDERALGEDFVIRYFF-------REEGIKV 54 Query 59 LEYVVPADNPEIRSLAYLSFPAGR-FEREMADLYGIRPVGHPKPRRLVRH-AHW-PDWHP 115 L+ V P I SL PA + +ERE+ D++G+ P GHP R L+ + +W P HP Sbjct 55 LKLCVGTKFPSITSLC----PAAKNYEREIRDMFGLVPEGHPDSRSLMLYPENWDPSIHP 110 Query 116 MRTDA-GPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKA 174 +R D G PEF G + + V G G+ ++ VGP+HAG+IEPGHFRFS+AGE I++L+ Sbjct 111 LRKDYDGKKPEFKKYGIYRYKEVFGEGINKVLVGPIHAGIIEPGHFRFSLAGEAILQLEI 170 Query 175 RLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLR 234 R ++ HRG+EK+ G+ A+ + RISGD + +LA+ A+E LGI+L V LR Sbjct 171 RHFWKHRGVEKVCEGKNPEEALRIVSRISGDNAVNISLAYLNAVETLLGIKLSQRVSYLR 230 Query 235 ALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGG 294 ++ ELER++NH DLG L D+G+ L H I+E L+R N +TGHR + A GG Sbjct 231 CVLAELERIWNHVRDLGWLFMDIGFPLPAQHLFSIQEQLMRLNKVITGHRFMFDAFSIGG 290 Query 295 VALRALPDTDELAALAVDLAEVAT-----LTLANSVVYDRFAGTAVLHPDDASALGCLGY 349 V ++ + L + L E T + V DRF T + A L G Sbjct 291 VNVKIEDEEKRLIDKMLTLVEKETKEVERFAIETPSVRDRFETTGRIFRKTAMELSLCGV 350 Query 350 VARASGLRSDARVEHPTIVLPITEIGAP---DGDVLARYTVRRDEFAASAALAQHIVESH 406 ARASGL+ D RVE P + ++ P GDV+AR+ +R +E S L + +E+ Sbjct 351 CARASGLKRDTRVELPYLAYKDFDVNVPISEQGDVMARFMIRVEEIYQSVNLIRGFLENL 410 Query 407 TGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPV 466 P + A + + S +G E RG V +D G I R K DPS+ NWPA+ Sbjct 411 --PNDNAEKQNLLFPYSWSVGNAETPRGNAFFFVMLDEKGNIYRLKYTDPSFRNWPAIQY 468 Query 467 AMADTIVPDFPLANKSFNQSYAGNDL 492 A+ I+ DFPL NKS N SY+GNDL Sbjct 469 AVLGDIIADFPLVNKSMNLSYSGNDL 494 >gi|91780243|ref|YP_555450.1| putative NADH-ubiquinone oxidoreductase subunit [Burkholderia xenovorans LB400] gi|91692903|gb|ABE36100.1| Putative NADH-ubiquinone oxidoreductase subunit [Burkholderia xenovorans LB400] Length=522 Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 177/432 (41%), Positives = 242/432 (57%), Gaps = 23/432 (5%) Query 78 FP-AGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEF--TDTGAFP 133 FP A R +R + DL G+R +G R + H +W D+HP+R + F + +P Sbjct 97 FPCATRMQRAVYDLLGLRAIGAEDTRPWLNHGNWAADYHPLRKRSSGTERFEPSQDADYP 156 Query 134 FLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPAT 193 F+ V G GV+EI VGP+HAG+IEPGHFRFSV GE ++RL+ RL + HRGIEKLF P Sbjct 157 FVPVAGDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGIEKLFQRTPWL 216 Query 194 AAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGAL 253 LA RI+GD++ A + A+ +A+E A + +P LRAL++E ER+ NH DLGAL Sbjct 217 LGQRLAARIAGDSTVAFSWAYCMAVERAFEVRIPPRAQWLRALLLERERIANHLGDLGAL 276 Query 254 ANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL----RALPDT-DELAA 308 ND G++ A R++E+ LR N GHR L I GG+A R +P + Sbjct 277 GNDAGFAYGLAAFSRLKEDWLRVNDQCFGHRYLMDRIAPGGMATDLDPRCIPAMLTQCEQ 336 Query 309 LAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTI- 367 + ++ + + S + DRFAG ++ A G G V RASG + D RV+HP Sbjct 337 IDAEVRAMQAIYDDQSGLQDRFAGAGIVSAKVAEHFGVCGLVGRASGRKIDVRVDHPYAP 396 Query 368 --VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTG-----PIEYAATLHPVG 420 + + + GDV AR VR +E S L + ++ G P+E+A G Sbjct 397 YHEVQVRAVSDDRGDVAARVAVRFNEIYESLRLLRALLSDLPGGHVVTPVEHA------G 450 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 APS G+G +EGWRG + VE DG + R DPSW NWPAL A+ IV DFPL N Sbjct 451 APSCGVGWIEGWRGDVFIAVETGADGTLLRCHCHDPSWHNWPALEHAIIGNIVADFPLIN 510 Query 481 KSFNQSYAGNDL 492 KSFN +YAG+DL Sbjct 511 KSFNLNYAGHDL 522 >gi|182679429|ref|YP_001833575.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] gi|182635312|gb|ACB96086.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] Length=492 Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 191/500 (39%), Positives = 264/500 (53%), Gaps = 33/500 (6%) Query 5 SWLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVP 64 +WL + G A LW D+ + +A +DG + VV F+ Sbjct 14 TWLTVATALAGGQAVLLGLWGDA-QAVHMAMLEDGANEPVVTTFMCA------------- 59 Query 65 ADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAP 124 + S+ L PA R ER + DL+G+ P+G P R + H W HP+ +GP+ Sbjct 60 --DGRFPSVGRLHAPAIRPERAIHDLFGLDPMGLPDERPWLDHGRWDIGHPLAA-SGPSA 116 Query 125 EFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIE 184 ++ A+PFL EG GV++IPVGPVHAG+IEPGHFRF+ AGET+VRL+ RL + H+GIE Sbjct 117 RASEPAAYPFLVAEGDGVHQIPVGPVHAGIIEPGHFRFNAAGETVVRLEERLGYTHKGIE 176 Query 185 KLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLY 244 L G A LA R SGD++ A+A A +LA+E ALGIE+ LRAL+ ELERL Sbjct 177 SLMAGASLDQAARLAGRTSGDSTVAYAYAFALAVEAALGIEISARAIYLRALMAELERLA 236 Query 245 NHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTD 304 NH D+GA+ ND ++L AH +RE +LR A GHRL+ I GGV++ P Sbjct 237 NHLGDIGAICNDAAFALMLAHCGVLRERVLRVAAKAFGHRLMMDCIIPGGVSVDLAPAGV 296 Query 305 E-----LAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSD 359 LA + + L + + DR GT ++ P A G GY+ RASG D Sbjct 297 SDIRHLLATIRGVFPALVELYDETASLQDRTVGTGIVPPSLARQFGAGGYIGRASGRAFD 356 Query 360 AR--VEHP-----TIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEY 412 R + +P T +P+ +GDV AR +R E S +L I++ Sbjct 357 TRRHLAYPPYDTLTFDVPVLN----EGDVNARVWIRIREVEQSLSLIDQILDRLPADGLL 412 Query 413 AATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTI 472 + G G+ +VEG+RG ++ V + +G I R + DPSWF WP L A+ I Sbjct 413 RTEVGGAGERREGLALVEGFRGDVLVSVRLSGEGSIERCHLRDPSWFQWPLLEAAIKGNI 472 Query 473 VPDFPLANKSFNQSYAGNDL 492 V DFPL NKSFN SY+G+DL Sbjct 473 VADFPLCNKSFNCSYSGHDL 492 >gi|323139191|ref|ZP_08074247.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylocystis sp. ATCC 49242] gi|322395574|gb|EFX98119.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylocystis sp. ATCC 49242] Length=505 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 197/505 (40%), Positives = 268/505 (54%), Gaps = 38/505 (7%) Query 6 WLRHRVSERGLIATAEQLWADSFRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEYV-VP 64 W+R V E G EQ+ A R L D + +FLA + E + Sbjct 21 WMRENVDETGWSRAIEQI-ATGGRDMLSLWSDGAN------VFLATFEKETKEFRIISYK 73 Query 65 ADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAP 124 ++ S+ L PA R ER + DLYG+ P P RR + H W +P G Sbjct 74 CEDSRFPSVGRLHPPALRLERAIHDLYGLEPRKTPDRRRWLDHGRWGFRYP-----GGTR 128 Query 125 EFTDT--GAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRG 182 E D+ + FL EG +++IPVGPVHAG+IEPGHFRFS GE +VRL+ RL FVH+G Sbjct 129 ETIDSTRDEYTFLPAEGEPLHQIPVGPVHAGIIEPGHFRFSANGEVVVRLEERLGFVHKG 188 Query 183 IEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELER 242 +++L G A LA R+SGD++ A++LA + A+E ALGIE P LRAL+ ELER Sbjct 189 VDQLMAGASIDRAARLAARVSGDSTVAYSLAFAQAVEAALGIEPPPRAIYLRALMAELER 248 Query 243 LYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGV------- 295 L NH D+GA+ ND +SL +AH +RE +LR + GHRL+ I GG+ Sbjct 249 LANHIGDIGAICNDASFSLMHAHCGVVREKVLRASKTCFGHRLMMDRIAPGGIVTDLAED 308 Query 296 ---ALRALPDTDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVAR 352 +LR L D+ ++ L ++ T+ + + DR T VL + A+ C G+V R Sbjct 309 GVTSLRVLIDS-----ISSALPQLITVYGDTTSLQDRTVSTGVLSNNLAAQYACGGFVGR 363 Query 353 ASGLRSDARVE---HPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTG 408 ASG DAR P L + DGDV AR VR DE AS + + I++ +G Sbjct 364 ASGRSFDARKAIGYAPYPALSFETGASTDGDVDARVWVRFDEVKASLQIIEQILDQLPSG 423 Query 409 PIEYAATLHPV-GAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVA 467 PI + P + G +VEG+RG I+ V I G + R+ + DPSWF WP L A Sbjct 424 PIN--VNVGPSDDSICEGAALVEGFRGDILAWVRIS-GGVVERSHLRDPSWFQWPLLEAA 480 Query 468 MADTIVPDFPLANKSFNQSYAGNDL 492 + IV DFPL NKSFN SY+G+DL Sbjct 481 IKGNIVADFPLCNKSFNCSYSGHDL 505 >gi|344341646|ref|ZP_08772563.1| NADH dehydrogenase (quinone) [Thiocapsa marina 5811] gi|343798400|gb|EGV16357.1| NADH dehydrogenase (quinone) [Thiocapsa marina 5811] Length=544 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 193/448 (44%), Positives = 251/448 (57%), Gaps = 16/448 (3%) Query 59 LEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMR 117 L+ +V P + S L R ER DL G+R GHP RR RH W D P+R Sbjct 99 LQTLVLQTRPVLDSHTPLFPGVDRLERHARDLTGVRFHGHPDERRWTRHQAWSTDDFPLR 158 Query 118 TD---AGPAPEFTDTGA-FPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLK 173 TD G + T +PF ++G GVYEIPVGPVHAG+IEPGHFRF AGE ++ L+ Sbjct 159 TDFPIEGRSTRRTPADVDYPFARIQGSGVYEIPVGPVHAGIIEPGHFRFQAAGEDVLSLE 218 Query 174 ARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRL 233 RL +VHRGIEKL GR + LA R+SGD++ A+A A + A+E A G P L Sbjct 219 ERLGYVHRGIEKLAVGRDPQGLMRLAARVSGDSTVAYAWAAAQAMERAAGCAPPPRAMSL 278 Query 234 RALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAG 293 RAL+ E ER+ NH D+GA+ NDVG++ A+ R+RE RR+AA+ GHRL+ + G Sbjct 279 RALLAERERIANHLGDIGAICNDVGFAFAHVQCARLREQWQRRSAALFGHRLMMDTLLPG 338 Query 294 GVALRALPDTD------ELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCL 347 GVA L +TD + AAL +A + + + + DR GT +L DA ALGC Sbjct 339 GVA-HDLSETDFRELRLDHAALQKAIAPLFDIIDDHPSLDDRLIGTGILAQADARALGCT 397 Query 348 GYVARASGLRSDARVEHPTIVLPITEIGAPD---GDVLARYTVRRDEFAASAALAQHIVE 404 GYV +ASGL D R + P + P+ GDV AR VR E AS + +++ Sbjct 398 GYVGKASGLAFDVRRDSPYAPYDQVRVEVPEETAGDVAARVRVRMKEVRASLWMLDRLLD 457 Query 405 SHTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 464 + E AA + G+G++EGWRG I+ V +GRI R DPSWF WPAL Sbjct 458 A-LPEGEIAAPFPSPQQGAMGLGLIEGWRGEILCVVRFAAEGRIARYFPRDPSWFTWPAL 516 Query 465 PVAMADTIVPDFPLANKSFNQSYAGNDL 492 + IVPDFP+ NKS N SYAG DL Sbjct 517 ERLIHGNIVPDFPVCNKSVNGSYAGVDL 544 >gi|296446946|ref|ZP_06888881.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylosinus trichosporium OB3b] gi|296255513|gb|EFH02605.1| NADH-ubiquinone oxidoreductase chain 49kDa [Methylosinus trichosporium OB3b] Length=511 Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 179/433 (42%), Positives = 236/433 (55%), Gaps = 17/433 (3%) Query 72 SLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHP-MRTDAGPAPEFTDTG 130 S+ L PA R ER + D+YG+ P RR + H W P + AP D+ Sbjct 84 SVGRLHPPALRLERAIRDIYGVEAEESPDARRWLDHGRWGVRRPGAAAPSTDAPNMADS- 142 Query 131 AFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGR 190 + FL VEG G+++IPVGPVHAG+IEPGHFRF+ GE +VRL+ RL + H+G+E L G Sbjct 143 -YEFLPVEGAGLHQIPVGPVHAGIIEPGHFRFTANGELVVRLEERLGYTHKGVETLMAGA 201 Query 191 PATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADL 250 LA R+SGD++ A+A+A + A+E AL +++P LRAL+ ELERL NH D+ Sbjct 202 TLARGARLAGRVSGDSTVAYAIAFAGAVESALEMKVPRRAVYLRALMAELERLANHFGDI 261 Query 251 GALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPD-------- 302 GA+ ND ++L NAH +RE LR N GHRLL + GGV P Sbjct 262 GAICNDAAFALMNAHCGVVRERFLRANRQCFGHRLLMDRVTIGGVTADVTPGAQNQLRKL 321 Query 303 TDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARV 362 +E AL L E+ T + + DR GT + S GC G V RASG DAR Sbjct 322 VEETKALVPRLIELFGDT---TSLQDRTVGTGHASSELVSKFGCGGVVGRASGRAFDARR 378 Query 363 E---HPTIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPV 419 P L T + +GDV AR VR DE +S +L + I++ G + Sbjct 379 TPGYAPYEELSFTLGASTEGDVDARVWVRFDEVRSSLSLVEQILDILPGGEWKNEAVPAP 438 Query 420 GAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLA 479 GA G+ +VEG+RG I+ V I DG + R ++ DPSWF WP L A+ IV DFPL Sbjct 439 GAMREGVALVEGFRGDILAWVRIGADGMLERCQLRDPSWFQWPLLEAAIERNIVADFPLL 498 Query 480 NKSFNQSYAGNDL 492 NKSFN SY+G DL Sbjct 499 NKSFNCSYSGTDL 511 >gi|53804773|ref|YP_113608.1| hydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53758534|gb|AAU92825.1| hydrogenase subunit [Methylococcus capsulatus str. Bath] Length=527 Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 189/432 (44%), Positives = 237/432 (55%), Gaps = 21/432 (4%) Query 78 FP-AGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWH-PMRTD---AGPAPEFTDTG-A 131 FP A R ER DL G++ +GHP RR VRH W + P+R D AG P T + Sbjct 100 FPGAARPERHTRDLLGLKFIGHPDDRRWVRHQAWGEREFPLRPDFPLAGQPPAVTAPDRS 159 Query 132 FPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRP 191 + F + GP V EIPVGPVHAG+IEPGHFRF GET++ L+ RL +VH+GIEKL GR Sbjct 160 YGFASAHGPEVNEIPVGPVHAGIIEPGHFRFLALGETVLNLEERLGYVHKGIEKLAVGRD 219 Query 192 ATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLG 251 LA R+SGDT+ HA A A+E A G+ P LRA+ +E ER+ NH D+G Sbjct 220 PEGLARLAGRVSGDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHLNDIG 279 Query 252 ALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL-------RALPDTD 304 A+ ND ++ ++ R+RE LR N GHRLL I GGVA+ A+P Sbjct 280 AICNDTAFAFGHSQFSRLRELWLRDNLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAA- 338 Query 305 ELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEH 364 +AAL +L E+ + +++ DR G VL LGCLGYVARA G+ D R Sbjct 339 -MAALRSELEELKPILDESTIFQDRVVGAGVLSERIVRELGCLGYVARACGIGRDVRERA 397 Query 365 PTIV---LPITEIGAPDGDVLARYTVRRDEFAASA-ALAQHIVESHTGPIEYAATLHPVG 420 P L + + DGDV AR VR +E AS L Q + GP+ P Sbjct 398 PHAPYDRLGVKAVTRGDGDVAARLYVRYEELLASLDILDQCLRRIEPGPLRADWRTPPAN 457 Query 421 APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLAN 480 A G+G+VEGWRG I V D G I R DPS FNWPAL + IVPDFPL N Sbjct 458 A--EGLGLVEGWRGEIATYVRFDGAGSIVRFFPRDPSVFNWPALEKLILGNIVPDFPLCN 515 Query 481 KSFNQSYAGNDL 492 KS N SY+G+DL Sbjct 516 KSVNGSYSGHDL 527 >gi|337266646|ref|YP_004610701.1| NADH-ubiquinone oxidoreductase chain 49kDa [Mesorhizobium opportunistum WSM2075] gi|336026956|gb|AEH86607.1| NADH-ubiquinone oxidoreductase chain 49kDa [Mesorhizobium opportunistum WSM2075] Length=505 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 186/442 (43%), Positives = 248/442 (57%), Gaps = 15/442 (3%) Query 62 VVPADNPEIR--SLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTD 119 VV + P R S+ L PA R ER ADL+G+ P G P RR + H +W HP+ T Sbjct 68 VVSLECPNGRYPSVGRLHPPALRLERAAADLFGLLPQGAPDTRRWLDHGYWGVSHPLSTR 127 Query 120 AGPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFV 179 A P T + +PFL+ EG +++IPVGPVHAG+IEPGHFRF+ +GET+VRL+ RL + Sbjct 128 A-RTPAATAS-PYPFLSAEGESLHQIPVGPVHAGIIEPGHFRFTASGETVVRLEERLGYA 185 Query 180 HRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVE 239 H+GIE L G A LA R SGD++ A++LA + A+E ALG+E+P LRAL+ E Sbjct 186 HKGIEGLMAGSDIDHAAKLAGRTSGDSTVAYSLAFARAVEAALGVEVPPRAIWLRALMAE 245 Query 240 LERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRA 299 LERL NH D+GA+ ND ++L +AH +RE +LR + A GHRL+R I GGVA Sbjct 246 LERLANHLGDIGAICNDAAFALMHAHCGVLRERVLRASDAAFGHRLMRDRIVPGGVATNL 305 Query 300 LPD-TDELAALAVDLAE----VATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARAS 354 D T + +L ++ + + L + + DR T L + A GYV RAS Sbjct 306 SDDGTTAVWSLIAEIRQRFPALVDLYDNTASLQDRTVATGRLKVELARQYRAGGYVGRAS 365 Query 355 GLRSDARVEHPTIVLPITEIGAP---DGDVLARYTVRRDEFAASAALAQHIVES-HTGPI 410 G DAR P +GDV AR +R E S +L + I+ GPI Sbjct 366 GRDFDARRSLAYPPYDTLNFDVPLLQEGDVNARVWIRIREVEQSLSLVEQILRQLPDGPI 425 Query 411 EYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMAD 470 + G P G+ +VEG+RG I+ + I G I R + DPSWF WP L A+ Sbjct 426 R--VDVSRTGGPHEGMALVEGFRGDILAWLRIGKTGLIERCHLRDPSWFQWPLLEAAIEG 483 Query 471 TIVPDFPLANKSFNQSYAGNDL 492 IV DFPL NKSFN SY+G+DL Sbjct 484 NIVADFPLCNKSFNCSYSGHDL 505 >gi|188996638|ref|YP_001930889.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931705|gb|ACD66335.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length=524 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/422 (39%), Positives = 236/422 (56%), Gaps = 13/422 (3%) Query 83 FEREMADLYGIRPVGHPKPRRLVRH-AHWP-DWHPMRTD--AGPAPEFTDTGAFPFLAVE 138 +ERE+ D++G+ P+ HP PR LV ++P D HP+R D PEF G + + VE Sbjct 104 YEREIRDMFGLVPLNHPDPRPLVLFPENFPSDLHPLRKDFDIKTRPEFKSYGKYEYKEVE 163 Query 139 GPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDL 198 G GV+ I VGP+HAG+IEPGHFRFS+AGE I++L+ R ++ HRG+EKL G+ A +++ Sbjct 164 GEGVFNILVGPIHAGIIEPGHFRFSLAGEHILQLEIRHFWKHRGVEKLAEGKTAEEVLEI 223 Query 199 AERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVG 258 ++SGD S AH LA+ AIE E+P +R L ELERL + D+ L DV Sbjct 224 VPKVSGDHSYAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVA 283 Query 259 YSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDT-----DELAALAVDL 313 YS ++E ++R N A+TG+R + ++ GGV++ + D+L + Sbjct 284 YSFGAQGMFILKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKF 343 Query 314 AEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV---LP 370 + ++ + DRF T + + L C+GY ARAS L+SD R EHP ++ L Sbjct 344 EFYKKIIFDSASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLT 403 Query 371 ITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGIGIVE 430 T +GD AR R + S ++ + ++ S E +P+ A +G E Sbjct 404 FTSQTFEEGDCFARLKCRLSDIEDSISIIKEVL-SDLPDGEIFTQSNPLPANRWTLGYSE 462 Query 431 GWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGN 490 G RG I++ V+ D +G+I R K+ DPS+ NW A+ A+ IV DFPL NKS N SYAG Sbjct 463 GQRGNIMYFVKTDKEGKIDRLKIRDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGT 522 Query 491 DL 492 DL Sbjct 523 DL 524 >gi|209964718|ref|YP_002297633.1| hydrogenase-4 component G [Rhodospirillum centenum SW] gi|209958184|gb|ACI98820.1| hydrogenase-4 component G [Rhodospirillum centenum SW] Length=510 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 184/437 (43%), Positives = 244/437 (56%), Gaps = 17/437 (3%) Query 68 PEIR--SLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRT-DAGPAP 124 PE R SL+ + A R ER + DL G+ P G R + H W P+ T AGPAP Sbjct 79 PEGRFPSLSAVRPSAKRLERAVRDLTGLVPEGLDDTRPWLDHDRWRQRQPLGTAPAGPAP 138 Query 125 EFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIE 184 + FL EGPG+++IPVGPVHAG+IEPGHFRFS GET+VRL+ RL +VH+G E Sbjct 139 AVR---TYDFLPAEGPGLHQIPVGPVHAGIIEPGHFRFSCQGETVVRLEERLGYVHKGTE 195 Query 185 KLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLY 244 +L GR A LA RISGD++ A+ALA +LA+E ALG+E+P LRAL+ ELERL Sbjct 196 RLMRGRLPEEAARLAGRISGDSTVAYALAFALAVEAALGLEVPPRARLLRALMAELERLA 255 Query 245 NHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDT- 303 NH D+GA+ ND ++L A +RE ++R GHR + I GG+A+ + Sbjct 256 NHLNDIGAICNDAAFALMLAEGSTLRERVMRTADTCFGHRFMMDRIVPGGIAVDLKEEGR 315 Query 304 ----DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSD 359 D L A+ + ++A L S + DR GT ++ P A G G V RAS +D Sbjct 316 AALYDMLDAVPRVVRQLAALYDGTSSLLDRTVGTGIVSPALAHRFGAGGPVGRASSRAAD 375 Query 360 ARVEHPTIVLPITEIGAPD---GDVLARYTVRRDEFAASAALAQHIVES-HTGPIEYAAT 415 AR P E P GDV AR +R E S L + I++ GP A Sbjct 376 ARRSPGYAPYPDLEFDVPTLPHGDVNARILIRFAEVEQSIRLIRQILKRLEPGPAR--AL 433 Query 416 LHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPD 475 L P+ G+ +VE +RG ++ + + GRI RA + DPSWF WP L A+ IV D Sbjct 434 LPAPEQPAEGMALVESFRGDVLCWLRLGAGGRIERAHLRDPSWFQWPLLEAAIEGNIVAD 493 Query 476 FPLANKSFNQSYAGNDL 492 FP+ NKSFN SY+G+DL Sbjct 494 FPICNKSFNCSYSGHDL 510 >gi|114775565|ref|ZP_01451133.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] gi|114553676|gb|EAU56057.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1] Length=532 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 182/481 (38%), Positives = 249/481 (52%), Gaps = 28/481 (5%) Query 31 ALVAAHDDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADL 90 A HD Y+ A R L + A+NPE+ S++ A R ER M D+ Sbjct 61 AEAGCHDRDAHAMYAYMAFAHPEHRHTLLRTPLAAENPELPSISGHYIAACRMERHMQDM 120 Query 91 YGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPEFTDT--GAFPFLAVEGPGVYEIPV 147 +GI P PR ++H HWP + +P+R D P G + ++ GVYEIPV Sbjct 121 FGIHITDIPDPRPWIKHEHWPREAYPLRVDFDARPPLLAEAHGDYDYVRSGSEGVYEIPV 180 Query 148 GPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTS 207 GPVHAG+IEPGHFRF GE I+ ++ RL +VH+GIE+ + A + +A RISGD++ Sbjct 181 GPVHAGIIEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRISGDST 240 Query 208 AAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQ 267 AHA A + A E A I++P +RA++ E ER+ NH D+GA+ ND ++ Sbjct 241 VAHAWAFAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFMLHQMH 300 Query 268 RIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLAEVATLTLANSV-- 325 R+RE++ R + + GHRLL + GGV + +L A+ L TL +AN V Sbjct 301 RLREDMARLHLELFGHRLLMNTLIPGGVLV-------DLGERAIGLLREQTLAIANEVEH 353 Query 326 ----------VYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIG 375 + R G+ ++ +DA +G LGYV RASG D R+E E+ Sbjct 354 LRAIYADHPSIQGRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVN 413 Query 376 APD---GDVLARYTVRRDEFAASAALAQHIVESH-TGPIEYAATLHPVGAPSSGIGIVEG 431 P GDV R VR +E A S+ L ++E GPI A P SG +EG Sbjct 414 VPQGKLGDVATRVWVRFEEIAESSRLISELLEKMPEGPI--VANWLPPEPGVSGFAAIEG 471 Query 432 WRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGND 491 WRG I V G+I R V DPS NW L +A+ + VPDFPL NKSFN SY+GND Sbjct 472 WRGEIAAWVRFGEGGQIDRCFVRDPSVINWLGLELAVREVPVPDFPLNNKSFNCSYSGND 531 Query 492 L 492 L Sbjct 532 L 532 >gi|299132788|ref|ZP_07025983.1| NADH dehydrogenase (quinone) [Afipia sp. 1NLS2] gi|298592925|gb|EFI53125.1| NADH dehydrogenase (quinone) [Afipia sp. 1NLS2] Length=513 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 189/459 (42%), Positives = 247/459 (54%), Gaps = 28/459 (6%) Query 50 AGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAH 109 A P+R + L P S+ + PA ER +ADL+ + PVG P R + H Sbjct 67 ASDPNRILVLSLTCPEGR--YPSVGRVHPPAIHLERAVADLFALVPVGLPDTRPWLDHGK 124 Query 110 WPDWHPM---RTDAGPAPEFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAG 166 W P+ R DA PA E+ FL VEG ++++PVGPVHAG+IEPGHFR S G Sbjct 125 WGVHAPLAAQRNDARPAEEYG------FLPVEGENIHQLPVGPVHAGIIEPGHFRISADG 178 Query 167 ETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIEL 226 ET+VR++ RL + H+GIE L G A LA R SGD++ A+ LA + A+E ALG Sbjct 179 ETVVRIEERLGYTHKGIESLLQGADLERAARLACRCSGDSTVAYGLAFARAVEAALGWMP 238 Query 227 PHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLL 286 P LRAL+ ELERL NH D+GA+ ND G+++ AH +RE +LR A GHRL+ Sbjct 239 PIRAAWLRALMAELERLANHLGDVGAICNDGGFAIMLAHCSVLREQVLREAVACFGHRLM 298 Query 287 RGAIRAGGVALRALP-DTDELAALAVDL----AEVATLTLANSVVYDRFAGTAVLHPDDA 341 I GGVA P +AAL D+ + L + + DR GT +L P A Sbjct 299 MDRIVPGGVAADIDPAGAARIAALMADIRRRFQRLVELYNTTASLQDRTVGTGILQPALA 358 Query 342 SALGCLGYVARASGLRSDAR-------VEHPTIVLPITEIGAPDGDVLARYTVRRDEFAA 394 + G+V RASG R DAR + +P+ E +GDV AR +R E Sbjct 359 AQFAAGGFVGRASGRRCDARRWPGYAPYDELEFEIPVLE----EGDVNARLWIRVREVEQ 414 Query 395 SAALAQHIVES-HTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKV 453 S L + I+ GPI + A S G+ IVEG+RG I+ V ID GRI R + Sbjct 415 SIRLIEQILAKLPDGPIRTENSSSLASAASEGMAIVEGFRGDILAWVRIDATGRIERCHL 474 Query 454 VDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 DPSWF WP L A+ IV DFP+ NKSFN SY+G+DL Sbjct 475 RDPSWFQWPLLEAAIEGNIVADFPICNKSFNCSYSGHDL 513 >gi|211948047|gb|ACJ13746.1| HyqG [Azorhizobium caulinodans ORS 571] Length=504 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 174/429 (41%), Positives = 235/429 (55%), Gaps = 26/429 (6%) Query 79 PAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAPEFTDTGAFPFLAVE 138 PA R ER + DLYG+ PV P R + H WP P+ AP DT + FL V+ Sbjct 87 PAQRLERTIRDLYGLVPVEAPDTRLWLDHGRWPVSRPLSG----APIPPDTNPYAFLPVD 142 Query 139 GPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDL 198 G G++E+ VGPVHAG+IEPGHFRF+ GE +VRL+ RL +VHRGIE L G A L Sbjct 143 GQGLHEVAVGPVHAGIIEPGHFRFTANGEAVVRLEERLGYVHRGIEGLMRGASLERAATL 202 Query 199 AERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVG 258 A R+SGD++ A+ALA + A+E AL +E P LR L+ ELERL NH D+GA+ ND Sbjct 203 AGRVSGDSTVAYALAFAGAVEAALEMEAPPRARWLRGLMAELERLANHFGDIGAVCNDAA 262 Query 259 YSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVA----------LRALPDTDELAA 308 ++ A + +RE +LR + A G R++R + GGV LR+L +T A Sbjct 263 FARMLAPCEVLREQMLRASEAAFGQRMMRDLVVPGGVLIDLAPRGEGRLRSLVETARSA- 321 Query 309 LAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHP--- 365 L E+ L + + DR GT + PD GC G+V RASG D R P Sbjct 322 ----LPELLALYDGTASLQDRTVGTGIAQPDLVRRFGCGGFVGRASGRGFDVRRTLPYAP 377 Query 366 --TIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPS 423 + + + A GDV AR +R E S +L ++ + + ++ L GA Sbjct 378 YDALRFDVAVLEA--GDVDARVRIRFSEAEESLSLITQMLSNMPDGGDLSSPLPQSGAAR 435 Query 424 SGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSF 483 G+ +VEG+RG + V +D GR+ A + DPSWF WP L + I+ DFPL NKSF Sbjct 436 EGVALVEGFRGDVFAFVRLDAAGRVAHAHLRDPSWFQWPVLEAVIEGNIIADFPLCNKSF 495 Query 484 NQSYAGNDL 492 N SYAG+DL Sbjct 496 NCSYAGHDL 504 >gi|186470859|ref|YP_001862177.1| NADH-ubiquinone oxidoreductase chain 49kDa [Burkholderia phymatum STM815] gi|184197168|gb|ACC75131.1| NADH-ubiquinone oxidoreductase chain 49kDa [Burkholderia phymatum STM815] Length=524 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 185/458 (41%), Positives = 246/458 (54%), Gaps = 39/458 (8%) Query 50 AGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAH 109 AGYPD L + P A R +R + DL G+R G R + H + Sbjct 91 AGYPD----LSTIFPC--------------ASRMQRAVYDLLGLRATGAADSRPWLNHGN 132 Query 110 WP-DWHPMRTDAGPAPEFTDTGA-FPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGE 167 WP D++P++ + F A +PF+ V G GV+EI VGP+HAG+IEPGHFRFSV GE Sbjct 133 WPADYYPLQKLSSGTERFQSEEADYPFVQVSGDGVHEIAVGPIHAGIIEPGHFRFSVVGE 192 Query 168 TIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELP 227 ++RL+ RL + HRGIE+LF P LA RI+GDT+ A + A+ +A+E AL I +P Sbjct 193 KVLRLEERLGYTHRGIERLFERTPLLTGHRLAGRIAGDTTVAFSWAYCMAVERALNIFVP 252 Query 228 HEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLR 287 LRA+++E ER+ NH DLGAL ND G++ A R++E+ LR N + GHR L Sbjct 253 PRAQWLRAVLLERERVANHLGDLGALGNDAGFAFGLAQFSRMKEDWLRVNDGMFGHRYLM 312 Query 288 GAIRAGGVALRALPDTDELAALAVDLAEVATLTLA-----NSVVYDRFAGTAVLHPDDAS 342 I GG+A A + E A + S + DRF G L + A+ Sbjct 313 DQIVPGGMARDIAGQFVGAAIEQCERTEDAVRAMQRIYDEQSGLQDRFTGAGKLTANVAA 372 Query 343 ALGCLGYVARASGLRSDARVEHPTIVLPITEI-----GAPDGDVLARYTVRRDEFAASAA 397 G ARASGL D RV+HP P E+ GDV AR VR +E S Sbjct 373 HFSVCGLAARASGLGIDVRVDHPYD--PYHEVQPHMMSDSRGDVAARVAVRFNEVYESLR 430 Query 398 LAQHIVESHTGPIEYAATLHPV--GAPSS-GIGIVEGWRGTIVHRVEIDVDGRITRAKVV 454 L +++ + A + PV G P+S G+G VEGWRG + +E +G I+R Sbjct 431 LIGVLLDG----LPDGAVVAPVETGRPASHGVGWVEGWRGDVFVAIETGENGTISRCHCH 486 Query 455 DPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492 DPSW NWPAL A+ IVPDFPL NKSFN +YAG+DL Sbjct 487 DPSWQNWPALEHAIIGNIVPDFPLINKSFNLNYAGHDL 524 >gi|344327625|gb|EGW39047.1| respiratory-chain NADH dehydrogenase, 49 Kd subunit [Desulfosporosinus sp. OT] Length=528 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 178/469 (38%), Positives = 254/469 (55%), Gaps = 27/469 (5%) Query 44 VVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRF-EREMADLYGIRPVGHPKPR 102 +YL L +PD+ L V E SL+ L PA + ERE DL+G+R VGHP PR Sbjct 65 CLYLILH-FPDKDFTLTLVAKGIKDEFPSLS-LILPALNWSEREAQDLFGLRAVGHPDPR 122 Query 103 RLVRHAHWP-DWHPMRTDAGPAPEFT--DTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGH 159 LV H WP ++HP+R D E+ G F + G G++++PVGP+HAG+IEPGH Sbjct 123 TLVLHPGWPKNFHPLRKDYKTGKEYKSFKRGPLVFPEMHGEGIFQVPVGPIHAGIIEPGH 182 Query 160 FRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIE 219 FRF V GE ++ L+A+L++ H+GIEKL G+ + + ER+ G + +H LA+ AIE Sbjct 183 FRFYVIGEPVLHLEAQLFYTHKGIEKLLEGKSLEEGLLIIERVCGVCAVSHGLAYCEAIE 242 Query 220 DALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAA 279 IELP +V R ++ ELER+YNH D+G + VG++L NA+ + +ENL R N Sbjct 243 KLANIELPRQVLLWRTILAELERVYNHIGDIGNMCAGVGFALGNANGSQSKENLQRLNLE 302 Query 280 VTGHRLLRGAIRAGGVALRALP---DTDE----LAALAVDLAEVATLTLANSVVYDRFAG 332 GHR LRG + GG+ +++P D+ E L LA D + L L + R Sbjct 303 FFGHRFLRGMVVPGGI--KSVPGPKDSQEILNRLMELANDFEDWIPLLLEHDGFRQRAVT 360 Query 333 TAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLP---ITEIGAPDGDVLARYTVRR 389 T VL + A LG G ARASG+ D R H ++ P + + +GDV AR VR Sbjct 361 TGVLKTESAIDLGVTGPAARASGVAYDWRELHSHLLYPELMVKSVVEHNGDVWARLMVRV 420 Query 390 DEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGI-------GIVEGWRGTIVHRVEI 442 E S + ++ G E + + + S+ + G VE RGT V + + Sbjct 421 KETRESFRFLETLLRK--GMQEAGRSSYIMNTFSNKLIPWQGAWGCVESPRGTDVIWLML 478 Query 443 DVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGND 491 D G+I R ++ S+ NWPA+P+ + IVPDFPL NKSF Y+ D Sbjct 479 DDKGKIYRCRIRSASYANWPAVPLTVPGNIVPDFPLINKSFELCYSCCD 527 >gi|158425980|ref|YP_001527272.1| NADH-ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571] gi|158332869|dbj|BAF90354.1| NADH-ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571] Length=504 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 175/429 (41%), Positives = 234/429 (55%), Gaps = 26/429 (6%) Query 79 PAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAPEFTDTGAFPFLAVE 138 PA R ER + DLYG+ PV P R + H WP P+ AP DT + FL VE Sbjct 87 PAQRLERTIRDLYGLVPVEAPDTRLWLDHGRWPVSRPLSG----APIPPDTTPYAFLPVE 142 Query 139 GPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDL 198 G G++E+ VGPVHAG+IEPGHFRF+ GE +VRL+ RL +VHRGIE L G A L Sbjct 143 GQGLHEVAVGPVHAGIIEPGHFRFTANGEAVVRLEERLGYVHRGIEGLMRGASLERAATL 202 Query 199 AERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVG 258 A R+SGD++ A+ALA + A+E AL +E P LR L+ ELERL NH D+GA+ ND Sbjct 203 AGRVSGDSTVAYALAFAGAVEAALEMEAPPRARWLRGLMAELERLANHFGDIGAVCNDAA 262 Query 259 YSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVA----------LRALPDTDELAA 308 ++ A +RE +LR + A G R++R + GGV LR+L +T A Sbjct 263 FARMLAPCAVLREQVLRASEAAFGQRMMRDLVVPGGVLIDLAPRGEGRLRSLVETARSA- 321 Query 309 LAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHP--- 365 L E+ L + + DR GT + PD GC G+V RASG D R P Sbjct 322 ----LPELLALYDGTASLQDRTVGTGIAQPDLVRRFGCGGFVGRASGRGFDVRRTLPYAP 377 Query 366 --TIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPS 423 + + + A GDV AR +R E S +L ++ + + ++ L GA Sbjct 378 YDALRFDVAVLEA--GDVDARVRIRFSEAEESLSLITQMLSNMPDGGDLSSPLPQSGAAR 435 Query 424 SGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSF 483 G+ +VEG+RG + V +D GR+ A + DPSWF WP L + I+ DFPL NKSF Sbjct 436 EGVALVEGFRGDVFAFVRLDAAGRVAHAHLRDPSWFQWPVLEAVIEGNIIADFPLCNKSF 495 Query 484 NQSYAGNDL 492 N SYAG+DL Sbjct 496 NCSYAGHDL 504 >gi|90422452|ref|YP_530822.1| NADH-ubiquinone oxidoreductase subunit 49kDa [Rhodopseudomonas palustris BisB18] gi|90104466|gb|ABD86503.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Rhodopseudomonas palustris BisB18] Length=502 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 176/424 (42%), Positives = 236/424 (56%), Gaps = 18/424 (4%) Query 79 PAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAPEFTDTGAFPFLAVE 138 PA R ER + DL+G+ PVG P R + H W P+ AP+ A+ FL VE Sbjct 87 PALRLERSIRDLFGLEPVGSPDSRPWLDHGQWGVTAPLGASTASAPQ----PAYEFLPVE 142 Query 139 GPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDL 198 G G++++ VGPVHAG+IEPGHFRF+ +GET+VRL+ RL +VH+GIE L G L Sbjct 143 GNGLHQVAVGPVHAGIIEPGHFRFTASGETVVRLEQRLGYVHKGIEGLMGGASLQQGAKL 202 Query 199 AERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVG 258 A R+SGD++ A++ A+S A E AL +++P LRAL+ ELERL NH D+GA+ ND Sbjct 203 AGRVSGDSTVAYSFAYSRAAEAALELKVPERAVWLRALMAELERLANHLGDIGAICNDAA 262 Query 259 YSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLAEV-- 316 ++L AH +REN+LR A GHRL+R I GGV R D L A+ L + Sbjct 263 FALMLAHCGVLRENVLRAAAIAFGHRLMRDLIVPGGV--RGDLSVDGLKAIEAALVSIRH 320 Query 317 ---ATLTLANSV--VYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR---VEHPTIV 368 A + L + + DR GT V+ + G G+V R SG D R P Sbjct 321 QFPALIELYDDTASLQDRTVGTGVVSSELVEQYGAGGFVGRGSGRAFDTRRKLCYPPYGQ 380 Query 369 LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGIGI 428 L P+GDV AR VR E S A+ I++ G E ++ + G+G+ Sbjct 381 LRFDVPVLPEGDVNARIWVRIREVEQSMAMIDQILDKLPGG-ELLTSVPAIAEDREGLGL 439 Query 429 VEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYA 488 VEG+RG ++ + + DG ITR + DPSWF WP L A+ IV DFPL NKSFN SY+ Sbjct 440 VEGFRGDVLVWLRLR-DGVITRCHLRDPSWFQWPLLEAAIEGNIVADFPLCNKSFNCSYS 498 Query 489 GNDL 492 G DL Sbjct 499 GPDL 502 >gi|344172625|emb|CCA85275.1| hydrogenase-4 component G [Ralstonia syzygii R24] Length=516 Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 185/429 (44%), Positives = 233/429 (55%), Gaps = 17/429 (3%) Query 78 FP-AGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMR--TDAGPAPEFTDTGAFP 133 FP AGR +R M DL GI G R + H WP P++ AG A T +P Sbjct 91 FPSAGRMQRAMTDLVGIAMRGSRDTRPWLNHGLWPPGAAPLQRGVQAGAATAGTLPADYP 150 Query 134 FLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPAT 193 F+ VEG GV+EI VGPVHAG+IEPGHFRFSV GE ++RL+ RL + H+GIE+ F Sbjct 151 FVRVEGDGVHEIAVGPVHAGIIEPGHFRFSVVGEKVLRLEERLGYTHKGIERRFTEMAPL 210 Query 194 AAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGAL 253 A LA R+SGD++ A+A A+ +A+E A P LRAL++E ER+ NH DLGAL Sbjct 211 DAYRLAGRVSGDSTVAYAWAYCMALESAWRCVPPPRADWLRALMLERERVANHLGDLGAL 270 Query 254 ANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDL 313 ND G + A R+RE+ R +A GHRL+ A+ GGVA P E D Sbjct 271 GNDAGLAFGLAQFSRLREDWQRLSAEAFGHRLMMDAVAPGGVAQDLTPAMLERLQQQCDR 330 Query 314 AEVATLTL-----ANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEH---P 365 E L ++ + DRF G + P A+ LG G RASG +D R +H P Sbjct 331 IEPEVRALRAVYDEHAGLQDRFLGAGRVSPQLAAQLGLTGLAGRASGRSADLRCDHAWLP 390 Query 366 TIVLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPIEYAA--TLHPVGAPS 423 L +T GDV AR VR DE S L + I TG A L P + Sbjct 391 YDSLAVTMATHHGGDVAARVAVRFDEVLESLRLIRAIC---TGLPSGATRIVLQPSAGAA 447 Query 424 SGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSF 483 G+G VEGWRG ++ +E+ DGRI R DPSW NWP L A+ IVPDFPL NKSF Sbjct 448 IGVGWVEGWRGEVLVALELTDDGRILRCHCHDPSWQNWPVLEHAIIGNIVPDFPLVNKSF 507 Query 484 NQSYAGNDL 492 N SY+G+DL Sbjct 508 NLSYSGHDL 516 >gi|258514105|ref|YP_003190327.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777810|gb|ACV61704.1| Hydrogenase, large subunit-like protein [Desulfotomaculum acetoxidans DSM 771] Length=525 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 171/449 (39%), Positives = 235/449 (53%), Gaps = 21/449 (4%) Query 57 VELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHP 115 VE + V+ A+NP S++ + A ERE+ D+ GI P GHP RR+ H WP D P Sbjct 83 VETKIVLNAENPTFTSISPVMPSAHWLEREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFP 142 Query 116 MRTDAGPAPEFTDT-GAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKA 174 MR D + G F VEG G+Y++PVGPVHAG+IEPGHFRF GE ++ L+A Sbjct 143 MRKDFIAGRQVPRVQGEMQFCKVEGEGLYQVPVGPVHAGIIEPGHFRFFTFGEDVINLQA 202 Query 175 RLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLR 234 +L++ HRGIEK G+ AV +AER+ G SA+HA++++ AIE GI P +R Sbjct 203 QLFYTHRGIEKTAEGKHFLDAVLVAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIR 262 Query 235 ALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGG 294 +++E+ERLYNH D+G + +G+S + ++E L+R N + GHR LRG + GG Sbjct 263 TVLLEMERLYNHVGDIGNMCAGIGFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGG 322 Query 295 VALRALPDTD----ELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYV 350 V + L DT+ L + +L E+ L++ + DR T VL D A LG G Sbjct 323 VKI-DLKDTEGIGRALDTVKRELKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPA 381 Query 351 ARASGLRSDARVEHPTIVLPITEIGAP---DGDVLARYTVRRDEFAASAALAQHIVES-- 405 ARASG+ D R E P P +GDV R R +E S + + + + Sbjct 382 ARASGVNRDLRREFPYAAYRRVSFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLP 441 Query 406 ---HTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWP 462 PI Y H + +G E RG VH V D + R V S NWP Sbjct 442 AGELQAPITYLQPYH------TAVGYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWP 495 Query 463 ALPVAMADTIVPDFPLANKSFNQSYAGND 491 +P+ + IVPDFPL NKSF YA D Sbjct 496 VVPLCLPGNIVPDFPLINKSFELCYACLD 524 Lambda K H 0.322 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1053329043408 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40