BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0093c
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607235|ref|NP_214607.1| hypothetical protein Rv0093c [Mycob... 553 8e-156
gi|31791271|ref|NP_853764.1| hypothetical protein Mb0096c [Mycob... 550 8e-155
gi|298527485|ref|ZP_07014894.1| conserved membrane protein [Myco... 540 9e-152
gi|289748563|ref|ZP_06507941.1| conserved membrane protein [Myco... 506 1e-141
gi|340625130|ref|YP_004743582.1| hypothetical protein MCAN_00971... 471 4e-131
gi|308369299|ref|ZP_07417257.2| conserved membrane protein [Myco... 463 1e-128
gi|254549025|ref|ZP_05139472.1| hypothetical protein Mtube_00936... 323 2e-86
gi|183980295|ref|YP_001848586.1| hypothetical protein MMAR_0263 ... 314 7e-84
gi|118619891|ref|YP_908223.1| hypothetical protein MUL_4851 [Myc... 311 1e-82
gi|15828076|ref|NP_302339.1| integral membrane protein [Mycobact... 310 2e-82
gi|296165162|ref|ZP_06847710.1| RNA polymerase sigma-70 factor [... 164 1e-38
gi|315024175|gb|ACZ56340.2| conserved hypothetical protein [Myco... 159 4e-37
gi|41407912|ref|NP_960748.1| hypothetical protein MAP1814 [Mycob... 156 4e-36
gi|336462051|gb|EGO40897.1| RNA polymerase sigma factor, sigma-7... 155 4e-36
gi|254775091|ref|ZP_05216607.1| hypothetical protein MaviaA2_105... 155 5e-36
gi|169630511|ref|YP_001704160.1| hypothetical protein MAB_3430c ... 148 1e-33
gi|240172458|ref|ZP_04751117.1| hypothetical protein MkanA1_2430... 145 5e-33
gi|333989626|ref|YP_004522240.1| RNA polymerase sigma factor Sig... 137 2e-30
gi|254819626|ref|ZP_05224627.1| hypothetical protein MintA_06874... 123 4e-26
gi|302526441|ref|ZP_07278783.1| predicted protein [Streptomyces ... 114 2e-23
gi|118465084|ref|YP_881623.1| RNA polymerase sigma factor SigC [... 110 3e-22
gi|134098686|ref|YP_001104347.1| integral membrane protein [Sacc... 102 5e-20
gi|300788373|ref|YP_003768664.1| integral membrane protein [Amyc... 100 2e-19
gi|256376606|ref|YP_003100266.1| integral membrane protein [Acti... 89.0 8e-16
gi|330465340|ref|YP_004403083.1| hypothetical protein VAB18032_0... 88.6 1e-15
gi|145595113|ref|YP_001159410.1| hypothetical protein Strop_2588... 87.8 2e-15
gi|238059060|ref|ZP_04603769.1| hypothetical protein MCAG_00026 ... 85.9 6e-15
gi|256376893|ref|YP_003100553.1| integral membrane protein [Acti... 80.5 3e-13
gi|300784894|ref|YP_003765185.1| integral membrane protein [Amyc... 77.0 3e-12
gi|302867486|ref|YP_003836123.1| hypothetical protein Micau_3016... 75.9 6e-12
gi|159038359|ref|YP_001537612.1| hypothetical protein Sare_2786 ... 72.8 5e-11
gi|331699581|ref|YP_004335820.1| hypothetical protein Psed_5843 ... 67.8 2e-09
gi|237785123|ref|YP_002905828.1| hypothetical protein ckrop_0512... 62.4 7e-08
gi|317507427|ref|ZP_07965160.1| membrane-bound aldehyde dehydrog... 58.5 9e-07
gi|213966060|ref|ZP_03394248.1| conserved hypothetical protein [... 58.5 1e-06
gi|296392601|ref|YP_003657485.1| hypothetical protein Srot_0165 ... 57.8 2e-06
gi|336326205|ref|YP_004606171.1| hypothetical protein CRES_1654 ... 56.2 5e-06
gi|19552113|ref|NP_600115.1| hypothetical protein NCgl0852 [Cory... 56.2 5e-06
gi|21323654|dbj|BAB98281.1| Hypothetical membrane protein [Coryn... 55.8 8e-06
gi|172040236|ref|YP_001799950.1| hypothetical protein cur_0556 [... 55.1 1e-05
gi|260577808|ref|ZP_05845742.1| membrane protein [Corynebacteriu... 54.3 2e-05
gi|68536606|ref|YP_251311.1| hypothetical protein jk1520 [Coryne... 53.5 4e-05
gi|217967233|ref|YP_002352739.1| putative transmembrane anti-sig... 51.2 2e-04
gi|259507074|ref|ZP_05749974.1| membrane protein [Corynebacteriu... 50.1 4e-04
gi|25027518|ref|NP_737572.1| hypothetical protein CE0962 [Coryne... 50.1 4e-04
gi|227504178|ref|ZP_03934227.1| conserved hypothetical protein [... 49.7 5e-04
gi|227487798|ref|ZP_03918114.1| conserved hypothetical protein [... 49.3 6e-04
gi|227548254|ref|ZP_03978303.1| conserved hypothetical protein [... 47.8 0.002
gi|284989832|ref|YP_003408386.1| integral membrane protein [Geod... 47.8 0.002
gi|227542439|ref|ZP_03972488.1| conserved hypothetical protein [... 47.0 0.003
>gi|15607235|ref|NP_214607.1| hypothetical protein Rv0093c [Mycobacterium tuberculosis H37Rv]
gi|15839474|ref|NP_334511.1| hypothetical protein MT0102 [Mycobacterium tuberculosis CDC1551]
gi|148659855|ref|YP_001281378.1| hypothetical protein MRA_0097 [Mycobacterium tuberculosis H37Ra]
45 more sequence titles
Length=282
Score = 553 bits (1426), Expect = 8e-156, Method: Compositional matrix adjust.
Identities = 281/282 (99%), Positives = 282/282 (100%), Gaps = 0/282 (0%)
Query 1 VLAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL 60
+LAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL
Sbjct 1 MLAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL 60
Query 61 DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR 120
DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR
Sbjct 61 DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR 120
Query 121 QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI 180
QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI
Sbjct 121 QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI 180
Query 181 MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW 240
MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW
Sbjct 181 MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW 240
Query 241 RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA
Sbjct 241 RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
>gi|31791271|ref|NP_853764.1| hypothetical protein Mb0096c [Mycobacterium bovis AF2122/97]
gi|121636006|ref|YP_976229.1| hypothetical protein BCG_0126c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224988479|ref|YP_002643166.1| hypothetical protein JTY_0097 [Mycobacterium bovis BCG str. Tokyo
172]
16 more sequence titles
Length=282
Score = 550 bits (1418), Expect = 8e-155, Method: Compositional matrix adjust.
Identities = 280/282 (99%), Positives = 281/282 (99%), Gaps = 0/282 (0%)
Query 1 VLAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL 60
+LAQATTAGSFNHHASTVLQG RGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL
Sbjct 1 MLAQATTAGSFNHHASTVLQGRRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL 60
Query 61 DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR 120
DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR
Sbjct 61 DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR 120
Query 121 QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI 180
QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI
Sbjct 121 QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI 180
Query 181 MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW 240
MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW
Sbjct 181 MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW 240
Query 241 RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA
Sbjct 241 RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
>gi|298527485|ref|ZP_07014894.1| conserved membrane protein [Mycobacterium tuberculosis 94_M4241A]
gi|298497279|gb|EFI32573.1| conserved membrane protein [Mycobacterium tuberculosis 94_M4241A]
Length=281
Score = 540 bits (1391), Expect = 9e-152, Method: Compositional matrix adjust.
Identities = 276/282 (98%), Positives = 279/282 (99%), Gaps = 1/282 (0%)
Query 1 VLAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL 60
+LAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL
Sbjct 1 MLAQATTAGSFNHHASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARL 60
Query 61 DGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR 120
DGERAP+ + VDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR
Sbjct 61 DGERAPL-AHEVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRR 119
Query 121 QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI 180
QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI
Sbjct 120 QHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVI 179
Query 181 MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW 240
MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW
Sbjct 180 MVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVW 239
Query 241 RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA
Sbjct 240 RSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 281
>gi|289748563|ref|ZP_06507941.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289689150|gb|EFD56579.1| conserved membrane protein [Mycobacterium tuberculosis T92]
Length=258
Score = 506 bits (1304), Expect = 1e-141, Method: Compositional matrix adjust.
Identities = 257/258 (99%), Positives = 258/258 (100%), Gaps = 0/258 (0%)
Query 25 VPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRA 84
+PAAMWSEPAGAIRRHCATIDGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRA
Sbjct 1 MPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRA 60
Query 85 WFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGT 144
WFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGT
Sbjct 61 WFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGT 120
Query 145 VQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAI 204
VQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAI
Sbjct 121 VQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAI 180
Query 205 LTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDN 264
LTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDN
Sbjct 181 LTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDN 240
Query 265 ASRGRRRGHLWPTDGSAA 282
ASRGRRRGHLWPTDGSAA
Sbjct 241 ASRGRRRGHLWPTDGSAA 258
>gi|340625130|ref|YP_004743582.1| hypothetical protein MCAN_00971 [Mycobacterium canettii CIPT
140010059]
gi|340003320|emb|CCC42438.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=258
Score = 471 bits (1213), Expect = 4e-131, Method: Compositional matrix adjust.
Identities = 241/258 (94%), Positives = 245/258 (95%), Gaps = 0/258 (0%)
Query 25 VPAAMWSEPAGAIRRHCATIDGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRA 84
+PAAMWSEPAGAIRRHCATI GMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRA
Sbjct 1 MPAAMWSEPAGAIRRHCATIKGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRA 60
Query 85 WFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGT 144
WF+QVASQAGDLRRLAESRPVV PVGRLGIRR +QHSPMTWRRWALLCVGIAQ ALGT
Sbjct 61 WFSQVASQAGDLRRLAESRPVVTPVGRLGIRRPSLQQHSPMTWRRWALLCVGIAQAALGT 120
Query 145 VQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAI 204
VQG GL+VGLTHQH GAG HLLNESTSWSIALG IMVGAALWPSAAAGLAGVLTAFVAI
Sbjct 121 VQGIGLNVGLTHQHAPGAGNHLLNESTSWSIALGAIMVGAALWPSAAAGLAGVLTAFVAI 180
Query 205 LTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDN 264
LTGYVIVDALS AVSTTRILTHLPVVIGAVLAIMVWRSASGPRP PDAVAAEPDIVLPDN
Sbjct 181 LTGYVIVDALSAAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPGPDAVAAEPDIVLPDN 240
Query 265 ASRGRRRGHLWPTDGSAA 282
ASRGRRRGHLWPTDGSAA
Sbjct 241 ASRGRRRGHLWPTDGSAA 258
>gi|308369299|ref|ZP_07417257.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308371580|ref|ZP_07425397.2| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308378543|ref|ZP_07482938.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394379|ref|ZP_07491672.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|308328098|gb|EFP16949.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308336236|gb|EFP25087.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308352255|gb|EFP41106.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367714|gb|EFP56565.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=236
Score = 463 bits (1192), Expect = 1e-128, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV
Sbjct 1 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 60
Query 107 PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL 166
PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL
Sbjct 61 PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL 120
Query 167 LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTH 226
LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTH
Sbjct 121 LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTH 180
Query 227 LPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
LPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA
Sbjct 181 LPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 236
>gi|254549025|ref|ZP_05139472.1| hypothetical protein Mtube_00936 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=162
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV
Sbjct 1 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 60
Query 107 PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL 166
PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL
Sbjct 61 PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL 120
Query 167 LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGY 208
LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGY
Sbjct 121 LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGY 162
>gi|183980295|ref|YP_001848586.1| hypothetical protein MMAR_0263 [Mycobacterium marinum M]
gi|183173621|gb|ACC38731.1| conserved membrane protein [Mycobacterium marinum M]
Length=237
Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/237 (71%), Positives = 190/237 (81%), Gaps = 1/237 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
MDCEVAREALSARLDGER PVPSARVDEHL EC AC WF QVA QA L+RL ESRPV+
Sbjct 1 MDCEVAREALSARLDGEREPVPSARVDEHLDECGACGLWFEQVAGQASRLQRLIESRPVI 60
Query 107 PPVGRLGIRRAPR-RQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTH 165
V GIR P+ R+ M+W+RWALL VGIAQ+A+G VQG G VGL H + G+G H
Sbjct 61 GAVDLTGIRPTPQPRERKRMSWQRWALLFVGIAQVAVGIVQGLGFSVGLGHHYVIGSGNH 120
Query 166 LLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILT 225
LLNEST+W+IALGV MV AA+WP AA GLAGVL FVA+L+ YV+VDALSGAV+T+R+LT
Sbjct 121 LLNESTAWTIALGVAMVVAAIWPGAAGGLAGVLMVFVAVLSVYVVVDALSGAVTTSRVLT 180
Query 226 HLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSAA 282
HLPV++G VLAIMVWRS PRP PD +A EPDIVLP NASRGRR GHLWPTDGSAA
Sbjct 181 HLPVLLGTVLAIMVWRSRGAPRPAPDVLADEPDIVLPQNASRGRRHGHLWPTDGSAA 237
>gi|118619891|ref|YP_908223.1| hypothetical protein MUL_4851 [Mycobacterium ulcerans Agy99]
gi|118572001|gb|ABL06752.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=241
Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/241 (70%), Positives = 190/241 (79%), Gaps = 5/241 (2%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
MDCEVARE LSARLDGER PVPSARVDEHL EC AC WF QVA QA L+RL ESRPV+
Sbjct 1 MDCEVARETLSARLDGEREPVPSARVDEHLDECGACGLWFEQVAGQASRLQRLIESRPVI 60
Query 107 PPVGRLGIRRAPR-RQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTH 165
V GIR P+ R+ M+W+RWALLCVGIAQ+A+G VQG G +GL H + G+G H
Sbjct 61 GAVDLAGIRPTPQPRERKRMSWQRWALLCVGIAQVAVGIVQGLGFSLGLGHHYVIGSGNH 120
Query 166 LLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVST----T 221
LLNEST+W+IALGV MV AA+WP AA GLAGVL FVA+L+ YV+VDALSGAV+T T
Sbjct 121 LLNESTAWTIALGVAMVVAAIWPGAAEGLAGVLMVFVAVLSVYVVVDALSGAVTTSRVLT 180
Query 222 RILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLWPTDGSA 281
R+LTHLPV++G VLA+MVWRS PRP PD +A EPDIVLP NASRGRR GHLWPTDGSA
Sbjct 181 RVLTHLPVLLGTVLAVMVWRSRGAPRPAPDVLADEPDIVLPQNASRGRRHGHLWPTDGSA 240
Query 282 A 282
A
Sbjct 241 A 241
>gi|15828076|ref|NP_302339.1| integral membrane protein [Mycobacterium leprae TN]
gi|221230553|ref|YP_002503969.1| putative integral membrane protein [Mycobacterium leprae Br4923]
gi|13093630|emb|CAC30943.1| probable integral membrane protein [Mycobacterium leprae]
gi|219933660|emb|CAR72085.1| probable integral membrane protein [Mycobacterium leprae Br4923]
Length=237
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/236 (71%), Positives = 184/236 (78%), Gaps = 1/236 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
MDCEVAREALSARLDGER VPS RVDEHLGECSACRAWF QVA QA DLR+L +SRP +
Sbjct 1 MDCEVAREALSARLDGEREAVPSVRVDEHLGECSACRAWFDQVADQARDLRQLVDSRPAI 60
Query 107 PPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHL 166
PV LGI PRR+ MTW+RWALLCVGIAQI L TVQG G+ VGLTH G++L
Sbjct 61 TPVDALGIVAPPRRRRPLMTWQRWALLCVGIAQIVLATVQGLGVSVGLTHDRAMSFGSYL 120
Query 167 LNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTH 226
L+EST+WS +LGVIM+ A LWP AAGLAGVLT FV +LT YV+VD ++GA T RIL H
Sbjct 121 LHESTAWSASLGVIMMAAVLWPGVAAGLAGVLTVFVGLLTVYVVVDVVAGATITLRILMH 180
Query 227 LPVVIGAVLAIMVWRSASGPRPR-PDAVAAEPDIVLPDNASRGRRRGHLWPTDGSA 281
LPV IGAVLAI VWR +S PRP D V + DIVLP NASRGRRRGHLWPTDGSA
Sbjct 181 LPVAIGAVLAIAVWRHSSTPRPTFDDEVDVDLDIVLPRNASRGRRRGHLWPTDGSA 236
>gi|296165162|ref|ZP_06847710.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899470|gb|EFG78928.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=457
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/251 (40%), Positives = 141/251 (57%), Gaps = 21/251 (8%)
Query 46 GMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRP- 104
GM C+ AREALSARLDGER + + +VD HL C CR+W A+Q RRLA P
Sbjct 6 GMRCDAAREALSARLDGERPQLLAQQVDAHLESCRRCRSWLIGAAAQT---RRLATVEPG 62
Query 105 --------VVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGL-- 154
++ +G R R + +RRW L+ VG+ Q+A+ Q G++ G+
Sbjct 63 DGPDLVAKIMASIGEESSGRRRRMRWLRSHYRRWGLIAVGVFQVAIAAAQISGVNFGMVS 122
Query 155 THQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDAL 214
+H H +G HL++EST+W +ALG+ MV A +WP A G+A + + L GYV VDA
Sbjct 123 SHMHGAMSGEHLMHESTAWLLALGLAMVAAGVWPITAIGVAAITGVYSVALFGYVAVDAF 182
Query 215 SGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPD---AVAAEPDIVLPDNASRGRRR 271
+G V+ TRI +H+P+++G A++V R R R D + A D P + RRR
Sbjct 183 AGDVTATRIASHMPLLLGVAFALLVARE----RVRSDRAGSSDAADDPAWPAESPAARRR 238
Query 272 GHLWPTDGSAA 282
GHLWP + SAA
Sbjct 239 GHLWPINRSAA 249
>gi|315024175|gb|ACZ56340.2| conserved hypothetical protein [Mycobacterium chubuense NBB4]
Length=241
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/225 (43%), Positives = 122/225 (55%), Gaps = 13/225 (5%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAE----- 101
M+C +AREALSAR+DGER P VD+HL CS CR W+T+ A L+ L
Sbjct 1 MNCRLAREALSARIDGEREPASVRSVDKHLVGCSDCRLWYTRAVGNAQSLQNLGRAGGLR 60
Query 102 SRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTG 161
SR V + R R + W RW+L VG+ + L Q + V +
Sbjct 61 SRSAAAVVEQTAENRPRGRAPQIVLWARWSLALVGVLYLVLTVTQTTAVPVARSDL---- 116
Query 162 AGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTT 221
G HL EST+WSIA+G MV A L PSAAAGL GVL + +L YV+ DA G VS
Sbjct 117 TGIHLFGESTAWSIAIGAAMVIAGLLPSAAAGLVGVLITYTCVLAVYVVTDAAKGIVSPL 176
Query 222 RILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNAS 266
R L+HLPV+IGA+LA++VWR P P D + PDN+S
Sbjct 177 RELSHLPVLIGAILALLVWRGTGTSHPAPIGA----DTLEPDNSS 217
>gi|41407912|ref|NP_960748.1| hypothetical protein MAP1814 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396266|gb|AAS04131.1| hypothetical protein MAP_1814 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=459
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/250 (43%), Positives = 145/250 (58%), Gaps = 18/250 (7%)
Query 46 GMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPV 105
GM C+VAREALSARLDGER V + +VD HL C CR+W A Q RRLA P
Sbjct 6 GMRCDVAREALSARLDGERPQVLAQQVDAHLEACRGCRSWLIGAAVQT---RRLASVTPG 62
Query 106 VPP--VGRL--GIRRAPRRQHSPMTW-----RRWALLCVGIAQIALGTVQGFGLDVGLT- 155
P V ++ I P + + M W RRW L+ VG+ Q+A+ Q G+D G+
Sbjct 63 EGPDLVDKIMASIGEQPTGRPAWMRWLRSHYRRWGLIGVGLFQVAIAAAQISGIDFGMVA 122
Query 156 -HQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDAL 214
H H +G HL++EST+W +ALG+ M+ A +WP++A+G+A + + L GYVIVDA
Sbjct 123 GHMHGAMSGEHLMHESTAWLLALGLAMIAAGVWPASASGVAAITGVYSVALLGYVIVDAF 182
Query 215 SGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRP---DAVAAEPDIVLPDNASRGRRR 271
G V+ TRI +H+P+++G A++V R G R RP DA A +A GRRR
Sbjct 183 DGEVTATRIASHMPLLLGLAFALLVARERVGSR-RPGSSDATADAGFAAWAADAPAGRRR 241
Query 272 GHLWPTDGSA 281
GHL P + +A
Sbjct 242 GHLRPINRAA 251
>gi|336462051|gb|EGO40897.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=459
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/250 (43%), Positives = 145/250 (58%), Gaps = 18/250 (7%)
Query 46 GMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPV 105
GM C+VAREALSARLDGER V + +VD HL C CR+W A Q RRLA P
Sbjct 6 GMRCDVAREALSARLDGERPQVLAQQVDAHLEACRGCRSWLIGAAVQT---RRLASVTPG 62
Query 106 VPP--VGRL--GIRRAPRRQHSPMTW-----RRWALLCVGIAQIALGTVQGFGLDVGLT- 155
P V ++ I P + + M W RRW L+ VG+ Q+A+ Q G+D G+
Sbjct 63 EGPDLVDKIMASIGEQPTGRPAWMRWLRSHYRRWGLIGVGLFQVAIAAAQISGIDFGMVA 122
Query 156 -HQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDAL 214
H H +G HL++EST+W +ALG+ M+ A +WP++A+G+A + + L GYVIVDA
Sbjct 123 GHMHGAMSGEHLMHESTAWLLALGLAMIAAGVWPASASGVAAITGVYSVALLGYVIVDAF 182
Query 215 SGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRP---DAVAAEPDIVLPDNASRGRRR 271
G V+ TRI +H+P+++G A++V R G R RP DA A +A GRRR
Sbjct 183 DGEVTATRIASHMPLLLGLAFALLVARERVGSR-RPGSSDATADAGFAAWAADAPAGRRR 241
Query 272 GHLWPTDGSA 281
GHL P + +A
Sbjct 242 GHLRPINRAA 251
>gi|254775091|ref|ZP_05216607.1| hypothetical protein MaviaA2_10516 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=453
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/249 (43%), Positives = 144/249 (58%), Gaps = 18/249 (7%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
M C+VAREALSARLDGER V + +VD HL C CR+W A Q RRLA P
Sbjct 1 MRCDVAREALSARLDGERPQVLAQQVDAHLEACRGCRSWLIGAAVQT---RRLASVTPGE 57
Query 107 PP--VGRL--GIRRAPRRQHSPMTW-----RRWALLCVGIAQIALGTVQGFGLDVGLT-- 155
P V ++ I P + + M W RRW L+ VG+ Q+A+ Q G+D G+
Sbjct 58 GPDLVDKIMASISEQPTGRPAWMRWLRSHYRRWGLIGVGLFQVAIAAAQISGIDFGMVAG 117
Query 156 HQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALS 215
H H +G HL++EST+W +ALG+ M+ A +WP++A+G+A + + L GYVIVDA
Sbjct 118 HMHGAMSGEHLMHESTAWLLALGLAMIAAGVWPASASGVAAITGVYSVALLGYVIVDAFD 177
Query 216 GAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRP---DAVAAEPDIVLPDNASRGRRRG 272
G V+ TRI +H+P+++G A++V R G R RP DA A +A GRRRG
Sbjct 178 GEVTATRIASHMPLLLGLAFALLVARERVGSR-RPGSSDATADAGFAAWTADAPAGRRRG 236
Query 273 HLWPTDGSA 281
HL P + +A
Sbjct 237 HLRPINRAA 245
>gi|169630511|ref|YP_001704160.1| hypothetical protein MAB_3430c [Mycobacterium abscessus ATCC
19977]
gi|169242478|emb|CAM63506.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=239
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/249 (40%), Positives = 141/249 (57%), Gaps = 23/249 (9%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESR--P 104
M+C+ RE LSA +DGE+A V R+DEH+ C++CR W + G R+ A +R P
Sbjct 1 MNCQEVREQLSAWVDGEQASVARKRLDEHVLSCASCREWLGRAR---GLDRQFAYARSAP 57
Query 105 VVPPVGRLGIRRAPRRQHSPMT----W-----RRWALLCVGIAQIALGTVQGFGLDVGLT 155
G++ + A +PM W R AL+ +G+ Q+ + +Q G+D G+
Sbjct 58 TRDLTGQI-LAAAAVEPLTPMARYAHWARHNINRCALVLIGLLQLGVAGMQVAGIDFGMV 116
Query 156 HQHPTGA--GTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDA 213
H GA G HL+NEST+W +ALGV MV A + P+AAAG+A VL AF +LTGYVI DA
Sbjct 117 SAHHHGAMTGAHLMNESTAWVVALGVAMVIAGVRPAAAAGMATVLGAFALVLTGYVINDA 176
Query 214 LSGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGH 273
++ V+ RI++HLPV++G + A++V R R P+ + V D + G R H
Sbjct 177 VNDQVTLARIISHLPVLLGLIFALLVLRDYRAGRTPPN----QHRAVFLDEVAAGER--H 230
Query 274 LWPTDGSAA 282
L D SAA
Sbjct 231 LRSADNSAA 239
>gi|240172458|ref|ZP_04751117.1| hypothetical protein MkanA1_24300 [Mycobacterium kansasii ATCC
12478]
Length=445
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/245 (39%), Positives = 131/245 (54%), Gaps = 12/245 (4%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESR-PV 105
M C+VARE LSARLDGER + + +VD HL C CRAW A+Q+ + R P
Sbjct 1 MRCDVAREELSARLDGERPQMLAQQVDAHLESCRRCRAWLIGAAAQSRRFAAVDAGRGPD 60
Query 106 VPPVGRLGIRRAPRRQHS-------PMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQH 158
+ R AP ++ P W+ W L+ VG+ QIA+ Q G++ G+ +H
Sbjct 61 LADRIMASARVAPTPRYRRWLHIVGPRHWQ-WCLIAVGMFQIAIAAAQISGINFGIMPRH 119
Query 159 PTGA---GTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALS 215
A G HLL+EST+W +ALG+ M+ AA+W SAA G+ + + L GYV VDA
Sbjct 120 KPDAMMHGEHLLHESTAWLLALGLAMIVAAVWSSAALGVGAIAGTYSLALVGYVAVDAWR 179
Query 216 GAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAEPDIVLPDNASRGRRRGHLW 275
G V+ RI +H+PV+ G V A++V R +G A V P + GRR GHL
Sbjct 180 GEVTAARIASHVPVLAGTVFALLVARDRTGAAASQPTEAEPAPAVRPTALAHGRRHGHLR 239
Query 276 PTDGS 280
P + S
Sbjct 240 PINRS 244
>gi|333989626|ref|YP_004522240.1| RNA polymerase sigma factor SigC [Mycobacterium sp. JDM601]
gi|333485594|gb|AEF34986.1| RNA polymerase sigma factor SigC [Mycobacterium sp. JDM601]
Length=462
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/257 (39%), Positives = 134/257 (53%), Gaps = 30/257 (11%)
Query 46 GMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAE---- 101
GM CEV RE LSA LDGE+ + + +VD HL C +CR W A+QA RRL
Sbjct 6 GMRCEVVRETLSALLDGEQQELNAQQVDAHLASCRSCRRWLVGAAAQA---RRLTTIETG 62
Query 102 ---------SRPVVPPVGRLGIRRAPRRQHSPMTWRRW-----ALLCVGIAQIALGTVQG 147
+ ++ G + Q W RW AL+ VG+ Q+A+ Q
Sbjct 63 TDAAAGPDLAAQILAAAGVTSVTG----QIVSGGWTRWGYRRLALIAVGVLQVAMALAQI 118
Query 148 FGLDVGLTHQHPTGA--GTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAIL 205
G+D G+ H GA G HLL+EST+W +ALG M+ A +WP AAG+A + F L
Sbjct 119 AGVDFGMVSAHGHGAATGAHLLHESTAWLLALGGAMIAAGVWPGVAAGVAAIAGVFALAL 178
Query 206 TGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWR---SASGPRPRPDAVAAEPDIVLP 262
+GYV +DA G V+ RI +HLPV++G + A++V R +GPR R DAVA
Sbjct 179 SGYVAIDAYHGQVTAARIASHLPVLVGLLFALLVARHRAGGAGPRTRDDAVADALPPAGT 238
Query 263 DNASRGRRRGHLWPTDG 279
+A + R R HL +G
Sbjct 239 GHAGQRRGRRHLRSVNG 255
>gi|254819626|ref|ZP_05224627.1| hypothetical protein MintA_06874 [Mycobacterium intracellulare
ATCC 13950]
Length=433
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/225 (39%), Positives = 123/225 (55%), Gaps = 18/225 (8%)
Query 71 RVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRRQHSP----MT 126
+VD HL C +CR+W A+Q RR A P P I + Q S M
Sbjct 5 QVDAHLESCRSCRSWLIGAAAQT---RRFASVAPGEGPDLVDKIMASIDDQASGHPRWMR 61
Query 127 W-----RRWALLCVGIAQIALGTVQGFGLDVGLT--HQHPTGAGTHLLNESTSWSIALGV 179
W RRW L+ VG+ Q+A+ Q G+D G+ H H +G HL++EST+W +ALG+
Sbjct 62 WLRSHYRRWGLIAVGLFQVAIAAAQISGVDFGMVSGHMHGAMSGEHLMHESTAWLLALGL 121
Query 180 IMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMV 239
MV A +WP++A+G+A + + L GYVIVDA G V+ TRI +H+P+++G A++V
Sbjct 122 AMVAAGVWPASASGVAAITGVYSVALLGYVIVDAFDGQVTATRIASHMPLLLGLAFALLV 181
Query 240 WRSASGPRPRPDAVAAEPDIVLPDNA---SRGRRRGHLWPTDGSA 281
R G R + A D P +A S GRRRGHL P + +A
Sbjct 182 ARERVGSHRRHGSDGA-VDADYPASAAGPSSGRRRGHLRPINHAA 225
>gi|302526441|ref|ZP_07278783.1| predicted protein [Streptomyces sp. AA4]
gi|302435336|gb|EFL07152.1| predicted protein [Streptomyces sp. AA4]
Length=246
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/222 (39%), Positives = 120/222 (55%), Gaps = 22/222 (9%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRR--LAESRP 104
+ CE+ REALSARLDGE P+P +VD+HL C++CR+W+ + A+ LRR L S P
Sbjct 4 VSCEIFREALSARLDGEAGPLPEPQVDQHLETCASCRSWYERSAT----LRRALLVRSAP 59
Query 105 VVPPVGR--LGIRRAPRRQHSPMTW-RRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTG 161
VP + L AP R+ W R AL VG+ Q L Q G+D + H +G
Sbjct 60 EVPDLTARILAETPAPPRE----KWGLRVALGLVGLVQCGLAFAQLLGMD----NAHGSG 111
Query 162 AGT--HLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVS 219
A HL+NES +W++A+GV ++ AAL AAAG ++T FV +L D + V+
Sbjct 112 AFMEGHLINESAAWNLAVGVGLLWAALRTRAAAGQLPMITGFVIVLAVLTTSDLIGDRVT 171
Query 220 TTRILTHLPVVIGAVLAIMVWRSA---SGPRPRPDAVAAEPD 258
R+L+H+ +V+G L V R P P A +PD
Sbjct 172 VARVLSHVFLVVGLALLYAVHRQHRLRHQPGPDLADTADDPD 213
>gi|118465084|ref|YP_881623.1| RNA polymerase sigma factor SigC [Mycobacterium avium 104]
gi|118166371|gb|ABK67268.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
avium 104]
Length=401
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/160 (42%), Positives = 99/160 (62%), Gaps = 6/160 (3%)
Query 127 WRRWALLCVGIAQIALGTVQGFGLDVGLT--HQHPTGAGTHLLNESTSWSIALGVIMVGA 184
+RRW L+ VG+ Q+A+ Q G+D G+ H H +G HL++EST+W +ALG+ M+ A
Sbjct 35 YRRWGLIGVGLFQVAIAAAQISGIDFGMVAGHMHGAMSGEHLMHESTAWLLALGLAMIAA 94
Query 185 ALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSAS 244
+WP++A+G+A + + L GYVIVDA G V+ TRI +H+P+++G A++V R
Sbjct 95 GVWPASASGVAAITGVYSVALLGYVIVDAFDGEVTATRIASHMPLLLGLAFALLVARERV 154
Query 245 GPRPRP---DAVAAEPDIVLPDNASRGRRRGHLWPTDGSA 281
G R RP DA A +A GRRRGHL P + +A
Sbjct 155 GSR-RPGSSDATADAGFAAWAADAPAGRRRGHLRPINRAA 193
>gi|134098686|ref|YP_001104347.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|291003627|ref|ZP_06561600.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|133911309|emb|CAM01422.1| probable integral membrane protein [Saccharopolyspora erythraea
NRRL 2338]
Length=237
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/204 (38%), Positives = 113/204 (56%), Gaps = 12/204 (5%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
M+CE R ++SARLDGE P +VD HL C+ACRAW + A LR RP
Sbjct 1 MNCESCRISISARLDGEDGTAPDEQVDAHLESCAACRAWQAKAAMLTRGLR----VRPAS 56
Query 107 PPVGRLG--IRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGT 164
P + + APRR+H + R AL V +AQ+ LG +Q GL H G
Sbjct 57 PTPDLVDAVLAHAPRRRHRAVP--RVALAVVAVAQLLLGALQMLGLGPHAHH----GMSA 110
Query 165 HLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRIL 224
HL NEST+W++A+G ++ AA A +G+ +L+ F+ +LTG+ + D ++G VS R+
Sbjct 111 HLFNESTAWNLAVGAGLLWAAARTRAVSGMLPLLSVFLVVLTGFSLHDLMAGVVSVERVA 170
Query 225 THLPVVIGAVLAIMVWRSASGPRP 248
+H +++G L V R++SG P
Sbjct 171 SHGLMLLGLGLLYTVHRTSSGGHP 194
>gi|300788373|ref|YP_003768664.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|299797887|gb|ADJ48262.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|340529968|gb|AEK45173.1| integral membrane protein [Amycolatopsis mediterranei S699]
Length=247
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/221 (37%), Positives = 108/221 (49%), Gaps = 19/221 (8%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESR--P 104
++C REALSAR+DGE +P + VD HL C CRAW A LRRL R P
Sbjct 3 VNCSDFREALSARIDGETGSLPDSVVDRHLAGCPQCRAWH----EDAVRLRRLMLVREAP 58
Query 105 VVPPVGRLGIRRAPRRQHSPMTWR---RWALLCVGIAQIALGTVQGFGLDVG-LTHQHPT 160
VP + + P +P R R AL V + Q LG + G DVG H
Sbjct 59 RVPDLTERILTEVP----APSAQRWGLRIALALVALVQSGLGLAELLGADVGHAEHGGMM 114
Query 161 GAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVST 220
HL NES +W++A+G ++ AAL P+ A+GL L FVA+L +D G V+
Sbjct 115 AMAVHLGNESAAWNLAIGFGLLWAALRPATASGLLPALAGFVAVLGLMSGIDLFDGQVTV 174
Query 221 TRILTHLPVVIGAVLAIMVWR-----SASGPRPRPDAVAAE 256
+R+L+H +V G L V R S GP R + A +
Sbjct 175 SRVLSHGLLVAGVGLLYGVRRQHRRTSTPGPSTRVEPAAHD 215
>gi|256376606|ref|YP_003100266.1| integral membrane protein [Actinosynnema mirum DSM 43827]
gi|255920909|gb|ACU36420.1| putative integral membrane protein [Actinosynnema mirum DSM 43827]
Length=238
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/198 (36%), Positives = 96/198 (49%), Gaps = 11/198 (5%)
Query 46 GMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLR-RLAESRP 104
G+ CE REALSAR+DGE V A VD HL C+ C W + + LR R AE+ P
Sbjct 2 GVVCETCREALSARMDGEVEHVAPAEVDAHLAGCAECARWQARAQALTRALRVRPAEASP 61
Query 105 VVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGT 164
+ VG + PRR W+R G+A +AL + +
Sbjct 62 DL--VGAVLADAPPRRV---AVWQR-----TGLAGVALVQLWLGLAQLLGGGADGHAGSG 111
Query 165 HLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRIL 224
HL ES +W++ALGV ++ AAL + L L FVA+L + D +G + R+
Sbjct 112 HLFTESAAWNLALGVGLLVAALREARVGALLPALGGFVAVLAAFSAYDLATGVATLERVA 171
Query 225 THLPVVIGAVLAIMVWRS 242
THLP V G VL +V R+
Sbjct 172 THLPAVAGLVLLHLVDRA 189
>gi|330465340|ref|YP_004403083.1| hypothetical protein VAB18032_06795 [Verrucosispora maris AB-18-032]
gi|328808311|gb|AEB42483.1| hypothetical protein VAB18032_06795 [Verrucosispora maris AB-18-032]
Length=297
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/244 (32%), Positives = 111/244 (46%), Gaps = 28/244 (11%)
Query 33 PAGAIRRHCATIDGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWF------ 86
PAG + M CE RE LSA+LDGE P D HL C+AC W+
Sbjct 10 PAGNHADLTSDYRYMGCEQWREILSAQLDGEATPDEERAADGHLETCTACEGWYSRAATV 69
Query 87 -----TQVASQAGDLRRLAESRPVVPPVGRLGIRRAPRRQH---------SPMTWRRWAL 132
TQV S DL S P A RRQ + +T R AL
Sbjct 70 TRRARTQVVSALPDLTEAILSAAPPPRRRARTPIAALRRQRWFAAFAGRITAVTALRAAL 129
Query 133 LCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAA 192
+G Q+ LG Q +V QH G HL +ES +W++A+G + AL + +
Sbjct 130 GLLGAVQLVLGLAQVGRAEVT---QHVHANGQHLWHESAAWNVAVGAGFLFVALRRTRPS 186
Query 193 GLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGP-----R 247
GL +L+AFVA L I D ++ V+ R+++H +V+G ++ +++ RS P R
Sbjct 187 GLLPMLSAFVATLVLLSINDLVASQVAVERLVSHGFLVVGYLITVLLARSVRQPGDPNDR 246
Query 248 PRPD 251
RP+
Sbjct 247 QRPE 250
>gi|145595113|ref|YP_001159410.1| hypothetical protein Strop_2588 [Salinispora tropica CNB-440]
gi|145304450|gb|ABP55032.1| hypothetical protein Strop_2588 [Salinispora tropica CNB-440]
Length=256
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/214 (33%), Positives = 96/214 (45%), Gaps = 18/214 (8%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLR--------- 97
M CE RE LSA+LDGE P A D HL C ACR WF Q A+ R
Sbjct 1 MGCEQWREVLSAQLDGEETPAERAAADSHLASCGACRTWFDQAAAITRRARLSVSVIGPD 60
Query 98 ---RLAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGL 154
+ + P P G R P RQ + R L G Q+ LG Q G
Sbjct 61 LTDAILAAHPATAPTG--ATMRRPWRQRLALALRA-VLGLTGALQVMLGLTQ-VGQAAAG 116
Query 155 THQHPTG--AGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVD 212
H H G A HL +E+ +W+IA+G + A + GL +L+AFV L + D
Sbjct 117 PHIHAGGPLASGHLWHEAAAWNIAVGAGFLFVAARRTPPTGLLPMLSAFVGTLVLLSVND 176
Query 213 ALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGP 246
++G V T R+++H + +G + +++ R P
Sbjct 177 VMTGRVETARLVSHGFLFVGYAIVVVMSRPGLHP 210
>gi|238059060|ref|ZP_04603769.1| hypothetical protein MCAG_00026 [Micromonospora sp. ATCC 39149]
gi|237880871|gb|EEP69699.1| hypothetical protein MCAG_00026 [Micromonospora sp. ATCC 39149]
Length=276
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/225 (34%), Positives = 106/225 (48%), Gaps = 28/225 (12%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWF-----------TQVASQAGD 95
M CE RE LSA+LDGE P + HL C CRAWF T+V S D
Sbjct 8 MRCEQWREMLSAQLDGEETPAERVTAEGHLVTCGDCRAWFETAAAVTRRARTRVVSAVPD 67
Query 96 LRR-LAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDV-- 152
L + + P P GR R+ R SP WR L G+ + LG V + +
Sbjct 68 LADAVLAAVPAGSPPGRW---RSTSRWRSPGRWRE--RLVAGL-RATLGLVGAVQVVLGL 121
Query 153 -----GLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTG 207
G T H G HL +ES +W++A+G + AL AG+ +L+AFVA L
Sbjct 122 VQVGRGTTVAHAHATGQHLWHESAAWNVAVGAGFLFVALRRFPPAGVLPMLSAFVATLVL 181
Query 208 YVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSA---SGPRPR 249
+ D ++G V+ +R+++H +V G VL ++ R GP PR
Sbjct 182 LSVNDLVTGQVAVSRLVSHAILVFGWVLTALLSRPGLRPGGPAPR 226
>gi|256376893|ref|YP_003100553.1| integral membrane protein [Actinosynnema mirum DSM 43827]
gi|255921196|gb|ACU36707.1| putative integral membrane protein [Actinosynnema mirum DSM 43827]
Length=242
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/184 (36%), Positives = 85/184 (47%), Gaps = 9/184 (4%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESR--P 104
MDC+ REALSARLDGE AP+P A D HL +C C W +A L RL R P
Sbjct 1 MDCDTCREALSARLDGEAAPLPPAWTDAHLAKCPDCARWR----GRAQALTRLVRVREAP 56
Query 105 VVPPVGRLGIRRAPRRQHS--PMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGA 162
VP + + P + P L +A G DV H G
Sbjct 57 AVPDLAAEVLADLPPAHGALRPRLALAAVALAQLWLALAQLLTGATGHDVTAGHG-AEGL 115
Query 163 GTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTR 222
HL NE +W++ALGV ++ AA+ A+GL L FV +L G+ D G + TR
Sbjct 116 AGHLFNEGAAWNLALGVGLLVAAVNGRRASGLLPTLGGFVVLLLGFSAHDLAEGTATATR 175
Query 223 ILTH 226
+ +H
Sbjct 176 VASH 179
>gi|300784894|ref|YP_003765185.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|299794408|gb|ADJ44783.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|340526324|gb|AEK41529.1| integral membrane protein [Amycolatopsis mediterranei S699]
Length=215
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/186 (38%), Positives = 91/186 (49%), Gaps = 23/186 (12%)
Query 60 LDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPPVGRLG---IRR 116
+DGE P A DEHL C+ CR WF + A LRR RP PPV L + R
Sbjct 1 MDGEAEP---ASPDEHLASCAKCREWF----AGAERLRRAMLLRPA-PPVPDLTAAILER 52
Query 117 APRRQHSPMTW-RRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLLNESTSWSI 175
P S W R AL V IAQ+ F +G H G HL +ES +W++
Sbjct 53 TP--APSGDGWGLRIALAVVAIAQLG----PAFAQLLGTAHD-----GGHLGHESGAWNL 101
Query 176 ALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVL 235
A+G+ + AAL P A G +LT FV +L + D +G V+ +R+ TH+ VV+G L
Sbjct 102 AVGIGPLTAALRPKTAGGQLPLLTGFVGVLAVWSAGDLAAGQVALSRVATHVLVVLGPAL 161
Query 236 AIMVWR 241
V R
Sbjct 162 LYAVHR 167
>gi|302867486|ref|YP_003836123.1| hypothetical protein Micau_3016 [Micromonospora aurantiaca ATCC
27029]
gi|315506106|ref|YP_004084993.1| hypothetical protein ML5_5371 [Micromonospora sp. L5]
gi|302570345|gb|ADL46547.1| hypothetical protein Micau_3016 [Micromonospora aurantiaca ATCC
27029]
gi|315412725|gb|ADU10842.1| hypothetical protein ML5_5371 [Micromonospora sp. L5]
Length=244
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/204 (34%), Positives = 102/204 (50%), Gaps = 7/204 (3%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLR-RLAESRPV 105
M CE RE LSA+LDGE + + HL C+ CR WF AS R +LA P
Sbjct 1 MVCEQWREILSAQLDGEASESEIEAAEAHLTGCAGCRGWFDSAASVTRRARTQLAPRVPD 60
Query 106 VPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIA-QIALGTVQGFGLDVGLTHQHPTGAGT 164
+ + +T L + A Q+ LG Q G + +TH H +G
Sbjct 61 LVDAVLAAAPPPRPSRRHRITLGLRGALGLLGAVQLVLGLAQ-IGREAVVTHAHTSG--Q 117
Query 165 HLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRIL 224
HL +ES +W++A+G + A SA +GL +L+AFVA L + D ++G V+ TR++
Sbjct 118 HLWHESAAWNVAVGAGFLYVAARRSAPSGLLPMLSAFVATLVLLSVNDLITGQVAMTRLV 177
Query 225 THLPVVIGAVLAIMVWRSASGPRP 248
+H +++G A+M+ S G RP
Sbjct 178 SHGFLLVG--WAVMLVLSRLGRRP 199
>gi|159038359|ref|YP_001537612.1| hypothetical protein Sare_2786 [Salinispora arenicola CNS-205]
gi|157917194|gb|ABV98621.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=256
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/224 (31%), Positives = 99/224 (45%), Gaps = 18/224 (8%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFT-----------QVASQAGD 95
M CE RE LSA+LDGE P A + HL C CRAWF V+ D
Sbjct 1 MGCEQWREVLSAQLDGEDTPGEQAAAESHLTGCGECRAWFDRAAAATRRARLSVSVTGPD 60
Query 96 L-RRLAESRPVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGL 154
L + + P PV RR+ R++ + L G Q+ LG Q G
Sbjct 61 LTESVLAALPSPAPV-ESAARRSGRQRLALALRAALGL--TGTLQVLLGLTQ-IGRAAAG 116
Query 155 THQHPTG--AGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVD 212
H H G A HL +E+ +W+IA+G + A + GL +L+AFV L + D
Sbjct 117 PHIHAGGPLASGHLWHEAAAWNIAVGAGFLFVAARRTPPTGLVPMLSAFVGTLVLLSVND 176
Query 213 ALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGPRPRPDAVAAE 256
++G V T R+++H + G + + + R P P + A+
Sbjct 177 LMTGRVETARLVSHGFLFAGYAIVVAMSRLGLHPDGPPTGLRAD 220
>gi|331699581|ref|YP_004335820.1| hypothetical protein Psed_5843 [Pseudonocardia dioxanivorans
CB1190]
gi|326954270|gb|AEA27967.1| hypothetical protein Psed_5843 [Pseudonocardia dioxanivorans
CB1190]
Length=245
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/201 (35%), Positives = 88/201 (44%), Gaps = 40/201 (19%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESR--- 103
MDC RE SARLDGE P + D HL C+ CRA+ Q A + RL +R
Sbjct 1 MDCATCREVFSARLDGEDLPGEAVASDAHLAGCARCRAFHEQAAR----VTRLTRTRLVD 56
Query 104 -------------PVVPPVGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGL 150
PVVP RL + RA L GIAQ+ALG V G L
Sbjct 57 LSGPRDLPALDLPPVVPARTRLDVLRA-------------LLAAAGIAQLALG-VSGL-L 101
Query 151 DVG----LTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAG-LAGVLTAFVAIL 205
D HL +ES +W++A+GV + AL + AG L +L AF A+L
Sbjct 102 DAAAAGQHGGLLGGAGLAHLGHESAAWNLAVGVGFLAVALRAARPAGSLVAMLGAFTAVL 161
Query 206 TGYVIVDALSGAVSTTRILTH 226
+D +SG V R+ H
Sbjct 162 LLTSGIDVVSGRVGLGRLAGH 182
>gi|237785123|ref|YP_002905828.1| hypothetical protein ckrop_0512 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758035|gb|ACR17285.1| putative membrane protein [Corynebacterium kroppenstedtii DSM
44385]
Length=270
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 96/224 (43%), Gaps = 26/224 (11%)
Query 47 MDCEVAREALSARLDGER--APVPSARVDEHLGECSACRAWFTQVASQAGDLRRL-AESR 103
M+C R+ALSAR+DGER A +D HL EC C+ W+TQ + LR A+
Sbjct 1 MECSEVRQALSARIDGERSRATWDDDVIDAHLAECEDCQNWYTQALTLGRTLRVAPADDS 60
Query 104 PVVPPVGRLGIRRAPRRQH-SPMTWRRWALLCVGIAQIALGTVQ-GFGLDVGLTHQH--- 158
+P ++ P Q +WR +L IA I LG + G+ + + L+H
Sbjct 61 ESIPDFSEFLVQSVPEDQLPHRRSWRVISLSLSRIALIVLGLIYVGWAIYL-LSHSTTLT 119
Query 159 ----PTGAGTH-------------LLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAF 201
P+G + L ++ + ++LG + A P AG+ + A
Sbjct 120 GSPVPSGGDSDGAVGDSHDPDVARLFIDAAAMRLSLGFSLFWCAWRPRMTAGMIPLFGAL 179
Query 202 VAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASG 245
A G+ D + G + +++ + ++ ++ + W S G
Sbjct 180 WAFTAGFASRDIVLGLATPQQLMGLVLFIVTVLVMVWCWFSHFG 223
>gi|317507427|ref|ZP_07965160.1| membrane-bound aldehyde dehydrogenase [Segniliparus rugosus ATCC
BAA-974]
gi|316254274|gb|EFV13611.1| membrane-bound aldehyde dehydrogenase [Segniliparus rugosus ATCC
BAA-974]
Length=119
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/53 (55%), Positives = 38/53 (72%), Gaps = 0/53 (0%)
Query 45 DGMDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLR 97
D + C++ +EALSARLDGER PVP+ RVDEH+ C +C W+ Q +QA LR
Sbjct 7 DSIQCDLCQEALSARLDGEREPVPAIRVDEHVAACDSCADWWRQAQAQAAALR 59
>gi|213966060|ref|ZP_03394248.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951258|gb|EEB62652.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=260
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/248 (30%), Positives = 98/248 (40%), Gaps = 59/248 (23%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
M+CE R ALSARLDGE+A + +D HLG C CRAW+ + RL + V
Sbjct 1 MECEEIRAALSARLDGEQASIADEVIDAHLGACEECRAWYERAV-------RLNRALTVG 53
Query 107 PPVG-----------RLGIRRAPRRQHSPMTWRRWALLCVGIAQ---IALG---TVQGFG 149
P G R+ + P R+ W LL G A+ IALG V G
Sbjct 54 PADGMPEFSTDDLSERILVSIEPERRRRERAW----LLMSGTARGVLIALGLCWAVWGIA 109
Query 150 --------LDVGLTHQHP---------TGA--------------GTHLLNESTSWSIALG 178
+ +GL+ P TGA G L + + +AL
Sbjct 110 TLVDASGMMTLGLSSTQPQEGAGIATSTGAPIDGSTATVDPMELGARLAIQLAAIRLALA 169
Query 179 VIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAVSTTRILTHLPVVIGAVLAIM 238
V + AA P AA G+A V A G+ I D L GA + I + + A+ +
Sbjct 170 VGLFWAAWRPRAAMGMAPVYGAVATFSIGFGIRDILIGAQGASEIAGLALMFVSALTLAV 229
Query 239 VWRSASGP 246
VW P
Sbjct 230 VWLGGYTP 237
>gi|296392601|ref|YP_003657485.1| hypothetical protein Srot_0165 [Segniliparus rotundus DSM 44985]
gi|296179748|gb|ADG96654.1| hypothetical protein Srot_0165 [Segniliparus rotundus DSM 44985]
Length=125
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/51 (53%), Positives = 34/51 (67%), Gaps = 0/51 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLR 97
+ C A+E+LSARLDGER PVP+ RVD H+ C C W+ Q +QA LR
Sbjct 15 IPCGTAQESLSARLDGEREPVPAHRVDAHVAACDDCAQWWRQAQTQAAALR 65
>gi|336326205|ref|YP_004606171.1| hypothetical protein CRES_1654 [Corynebacterium resistens DSM
45100]
gi|336102187|gb|AEI10007.1| putative membrane protein [Corynebacterium resistens DSM 45100]
Length=277
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/45 (54%), Positives = 29/45 (65%), Gaps = 0/45 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVAS 91
MDCE R ALSARLDGER +P +D HL C C+ W+T V +
Sbjct 1 MDCEEVRAALSARLDGERTSLPDDVIDAHLEVCEECQRWYTTVTA 45
>gi|19552113|ref|NP_600115.1| hypothetical protein NCgl0852 [Corynebacterium glutamicum ATCC
13032]
gi|62389777|ref|YP_225179.1| hypothetical protein cg1011 [Corynebacterium glutamicum ATCC
13032]
gi|145295058|ref|YP_001137879.1| hypothetical protein cgR_1001 [Corynebacterium glutamicum R]
gi|41325112|emb|CAF19593.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032]
gi|140844978|dbj|BAF53977.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043629|gb|EGV39318.1| hypothetical protein CgS9114_13985 [Corynebacterium glutamicum
S9114]
Length=223
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/219 (26%), Positives = 96/219 (44%), Gaps = 31/219 (14%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRL-----AE 101
+DC + ALSA+LDGE + A ++ HL C CR ++ ++A +L R+ AE
Sbjct 2 VDCSAIQAALSAKLDGEPTGLDDAVIEAHLANCEECRNYY----NRAAELNRMLNFCAAE 57
Query 102 SRPVVPPVGRLGIRRAPRRQHSPMTWRRWA-------------LLCVGIAQIALG-TVQG 147
R + PP + + P WRR A L+ +G+ +A G T+ G
Sbjct 58 PRTLTPP----DLSEIILAEVEP-EWRRHANAKVVGSLLSRVLLVILGVVYLAWGITMLG 112
Query 148 FGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTG 207
+ + T + LL E+ ++ IAL V ++ AA P AG+ + G
Sbjct 113 DSASISVQEDPLT---SRLLAEAVAYRIALSVGLLFAAWKPRIIAGMLPIFGTLWTFSAG 169
Query 208 YVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGP 246
+ D + G + L+ ++I ++ ++SGP
Sbjct 170 FAARDLVFGVADSQTGLSIGLLLISTIVLSFALVNSSGP 208
>gi|21323654|dbj|BAB98281.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
Length=238
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/219 (26%), Positives = 96/219 (44%), Gaps = 31/219 (14%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRL-----AE 101
+DC + ALSA+LDGE + A ++ HL C CR ++ ++A +L R+ AE
Sbjct 17 VDCSAIQAALSAKLDGEPTGLDDAVIEAHLANCEECRNYY----NRAAELNRMLNFCAAE 72
Query 102 SRPVVPPVGRLGIRRAPRRQHSPMTWRRWA-------------LLCVGIAQIALG-TVQG 147
R + PP + + P WRR A L+ +G+ +A G T+ G
Sbjct 73 PRTLTPP----DLSEIILAEVEP-EWRRHANAKVVGSLLSRVLLVILGVVYLAWGITMLG 127
Query 148 FGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTG 207
+ + T + LL E+ ++ IAL V ++ AA P AG+ + G
Sbjct 128 DSASISVQEDPLT---SRLLAEAVAYRIALSVGLLFAAWKPRIIAGMLPIFGTLWTFSAG 184
Query 208 YVIVDALSGAVSTTRILTHLPVVIGAVLAIMVWRSASGP 246
+ D + G + L+ ++I ++ ++SGP
Sbjct 185 FAARDLVFGVADSQTGLSIGLLLISTIVLSFALVNSSGP 223
>gi|172040236|ref|YP_001799950.1| hypothetical protein cur_0556 [Corynebacterium urealyticum DSM
7109]
gi|171851540|emb|CAQ04516.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length=271
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (48%), Positives = 31/51 (61%), Gaps = 0/51 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLR 97
M+C R ALSARLDGE +P VD H+ +C C+AW+ Q + DLR
Sbjct 1 MECAEVRAALSARLDGEEVALPGDIVDAHVAQCEECQAWYAQATAIGRDLR 51
>gi|260577808|ref|ZP_05845742.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258604035|gb|EEW17278.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=260
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (42%), Gaps = 22/200 (11%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQV----------------- 89
MDC+ R ++SARLDGE A + VD HL C C+ W++ V
Sbjct 1 MDCQAVRTSMSARLDGETAELSDDLVDAHLAACEDCQRWYSTVTALGRRMNVSATPTEGE 60
Query 90 -ASQAGDLRRLAESRPVVPPVG-RLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQG 147
A++ GD ++ A V+ I RR+ P+ + R AL+ V + + G
Sbjct 61 PATEPGDEQKAALLAQVLEQADHNPQISGGLRRRQLPLLFGRSALVIVALVYVVWGLSML 120
Query 148 FGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTG 207
FG +G + L++++ + AL ++ AA P AA+ + + G
Sbjct 121 FGPPLG---DDADSSQLRLVSDAATMRFALAGGLLWAAWRPKAASAVLPIYLGLWGFGLG 177
Query 208 YVIVDALSGAVSTTRILTHL 227
+ + + V LT L
Sbjct 178 FATREIVLSMVGEEGSLTTL 197
>gi|68536606|ref|YP_251311.1| hypothetical protein jk1520 [Corynebacterium jeikeium K411]
gi|68264205|emb|CAI37693.1| putative membrane protein [Corynebacterium jeikeium K411]
Length=260
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/181 (26%), Positives = 73/181 (41%), Gaps = 22/181 (12%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLA---ESR 103
MDC+ R A+SARLDGE A + VD HL C C+ W+ V + + A ES
Sbjct 1 MDCQAVRNAMSARLDGETAELSDDLVDAHLAGCEECQRWYATVTALGRRINLSAAPEEST 60
Query 104 PVVPPVGRLG----------------IRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQG 147
P P I RR+ P+ R+AL+ V + + G
Sbjct 61 PTTEPNDDRKAALLAQVLEQADHNPQISVGLRRRQLPLLVGRFALVAVALIYVVWGLSLM 120
Query 148 FGLDVGLTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTG 207
FG +G + + L++++ + AL ++ AA P A+ + + G
Sbjct 121 FGSPIG---EDADSSQLRLVSDAATMRFALAGGLLWAAWRPKVASAVLPIYLGLWGFGLG 177
Query 208 Y 208
+
Sbjct 178 F 178
>gi|217967233|ref|YP_002352739.1| putative transmembrane anti-sigma factor [Dictyoglomus turgidum
DSM 6724]
gi|217336332|gb|ACK42125.1| putative transmembrane anti-sigma factor [Dictyoglomus turgidum
DSM 6724]
Length=146
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (44%), Gaps = 7/125 (5%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
M C+ R LSA +DGE +P ++EHL C C+ + +L + E P
Sbjct 1 MRCKEVRRLLSAYIDGEVSPAKRMEIEEHLSYCLECKKELLTLEKLIKELHEIPEIIPSE 60
Query 107 PPVGRLGIRRA--PRRQHSPMTWRRWALLCVGIAQIALG---TVQGFGLDVGLTHQHPTG 161
RL + A R S + WR+ + +G A I LG +Q + + L+ Q+ T
Sbjct 61 DFSKRLWTKIALGDERNTSYINWRK-IFIVLGTAAIFLGLIFVIQSY-FNQFLSKQNNTY 118
Query 162 AGTHL 166
L
Sbjct 119 VYYEL 123
>gi|259507074|ref|ZP_05749974.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259165352|gb|EEW49906.1| membrane protein [Corynebacterium efficiens YS-314]
Length=228
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/63 (43%), Positives = 36/63 (58%), Gaps = 1/63 (1%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLA-ESRPV 105
+DC + ALSARLDGE + A +D HL C ACR ++ + A+ L A E R +
Sbjct 7 VDCHGIQAALSARLDGEPTGIDDAVIDTHLAHCEACRTFYDRAAALNRTLSLSAVEPRTM 66
Query 106 VPP 108
VPP
Sbjct 67 VPP 69
>gi|25027518|ref|NP_737572.1| hypothetical protein CE0962 [Corynebacterium efficiens YS-314]
gi|23492800|dbj|BAC17772.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=229
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/63 (43%), Positives = 36/63 (58%), Gaps = 1/63 (1%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLA-ESRPV 105
+DC + ALSARLDGE + A +D HL C ACR ++ + A+ L A E R +
Sbjct 8 VDCHGIQAALSARLDGEPTGIDDAVIDTHLAHCEACRTFYDRAAALNRTLSLSAVEPRTM 67
Query 106 VPP 108
VPP
Sbjct 68 VPP 70
>gi|227504178|ref|ZP_03934227.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
gi|227199222|gb|EEI79270.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
Length=231
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/212 (25%), Positives = 91/212 (43%), Gaps = 16/212 (7%)
Query 50 EVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPP- 108
E + A+SA+LDGE A +P+ VD H+ C+ CRA+ + A+ + L + + + PP
Sbjct 5 EQVQAAISAQLDGEPAQLPADVVDAHVESCAQCRAFRDKAAALSRSLSFVESAEGMAPPQ 64
Query 109 ----VGRLGIR----RAPRRQHSPMTWRRWALLCVGI-----AQIALGTVQGFGL--DVG 153
V G+ RA + + +T R L+ +G+ A + + + G + D G
Sbjct 65 DLSEVIIAGVESEWNRASSARQTALTVARVGLVSLGLVFAVWAIVVVASASGLAVIGDEG 124
Query 154 LTHQHPTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDA 213
LL E + L + ++ AA P++ G V+ A L G+ + D
Sbjct 125 TLSLSADPERARLLIEGAALRFGLAIGLLFAAWRPASIPGTLPVVATMFAFLFGFTMRDI 184
Query 214 LSGAVSTTRILTHLPVVIGAVLAIMVWRSASG 245
G +++ L + + I W + G
Sbjct 185 ALGTTVMSQVYILLATGLSTLALIWAWAADKG 216
>gi|227487798|ref|ZP_03918114.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227092300|gb|EEI27612.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
Length=223
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/186 (25%), Positives = 85/186 (46%), Gaps = 10/186 (5%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
+ C+ + A+SA+LD E+A V ++ HL C+ CRA+ +L + P +
Sbjct 2 ISCQEIQRAISAKLDNEKADVDDTIIEAHLEGCADCRAYLENARLLKAELSVTDDDAPDL 61
Query 107 PPVGRLG----IRRAPRRQHSPMTWRRWALLCVGIAQI--ALGTV--QGFGLDVGLTHQH 158
+ G +RRA R+ + + R L+ +GIA I A+ T+ + G+ +
Sbjct 62 TDLILAGVGPEVRRAESRRATSLAIARTLLVLLGIAYIIWAIATLVESTHLVTEGIISED 121
Query 159 PTGAGTHLLNESTSWSIALGVIMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDALSGAV 218
P +G ++N + + +ALG ++ A+ A G+ + G+ D + G +
Sbjct 122 PLVSG-MMVNLAAA-RVALGFGLLFASWKTEVATGMLPIFATLWTFSFGFAARDLIVGTL 179
Query 219 STTRIL 224
S I+
Sbjct 180 SNGNIV 185
>gi|227548254|ref|ZP_03978303.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079677|gb|EEI17640.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
Length=208
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/208 (29%), Positives = 97/208 (47%), Gaps = 29/208 (13%)
Query 53 REALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVVPP---- 108
R ALSAR+DGE + + A VD H+ EC+ C A++ ++ S + +LR + PP
Sbjct 8 RAALSARVDGESSGLDDAVVDAHVAECAECSAYYQRILSLSRNLRFAEIGGGMAPPENLS 67
Query 109 -VGRLGIRRAPRRQHSPMTWRRWALLCVGIAQIALGTVQGFGLDVGLTHQHPTGAGTHLL 167
V G+ RR ++ RR LL + +IAL A HL+
Sbjct 68 TVILAGVEGEWRR----LSQRRTVLLT--LCRIALVAA---------ALVWLAWAVVHLV 112
Query 168 N--ESTSWSIALGV--IMVGAALWPSAAAGLAGVLTAFVAILTGYVIVDAL--SGAVSTT 221
N E + S+ LGV + A P+ G+A V+ + G+V+ DA+ +G+ +
Sbjct 113 NGGEPATASVRLGVASALAYTAARPAQIPGIALVVGSMFTFTLGFVVRDAVLDTGSGVAS 172
Query 222 RILTHLPVVIGAVLAIMVWRSASGPRPR 249
+L LP ++ + + + R GP+ R
Sbjct 173 HVLILLPTLVALLGTLAIDR---GPQLR 197
>gi|284989832|ref|YP_003408386.1| integral membrane protein [Geodermatophilus obscurus DSM 43160]
gi|284063077|gb|ADB74015.1| integral membrane protein [Geodermatophilus obscurus DSM 43160]
Length=215
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (53%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQ 88
M C REA+SARLDGE +P+ +D HL C AC AW Q
Sbjct 1 MQCTPYREAVSARLDGESPGLPAGELDAHLDACPACAAWARQ 42
>gi|227542439|ref|ZP_03972488.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227181637|gb|EEI62609.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=223
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 4/98 (4%)
Query 47 MDCEVAREALSARLDGERAPVPSARVDEHLGECSACRAWFTQVASQAGDLRRLAESRPVV 106
+ C+ + A+SA+LD E+A + ++ HL C+ CRA+ +L + P +
Sbjct 2 ISCQEIQRAISAKLDNEKADIDDTIIEAHLEGCADCRAYLENARLLKAELSVTDDDAPDL 61
Query 107 PPVGRLG----IRRAPRRQHSPMTWRRWALLCVGIAQI 140
+ G +RRA R+ + + R L+ +GIA I
Sbjct 62 TDLILAGVGPEVRRAESRRATSLAIARTLLVLLGIAYI 99
Lambda K H
0.322 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 449018424576
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40