BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0108c
Length=69
Score E
Sequences producing significant alignments: (Bits) Value
gi|148821300|ref|YP_001286054.1| hypothetical protein TBFG_10109... 141 3e-32
gi|308231464|ref|ZP_07412527.2| hypothetical protein TMAG_01240 ... 141 3e-32
gi|308370315|ref|ZP_07421046.2| hypothetical protein TMCG_02316 ... 141 4e-32
gi|15607250|ref|NP_214622.1| hypothetical protein Rv0108c [Mycob... 140 5e-32
gi|15839489|ref|NP_334526.1| hypothetical protein MT0117 [Mycoba... 138 2e-31
gi|183980329|ref|YP_001848620.1| hypothetical protein MMAR_0298 ... 126 9e-28
gi|240168080|ref|ZP_04746739.1| hypothetical protein MkanA1_0211... 124 4e-27
gi|118619870|ref|YP_908202.1| hypothetical protein MUL_4825 [Myc... 123 1e-26
gi|296167261|ref|ZP_06849664.1| conserved hypothetical protein [... 118 2e-25
gi|289748579|ref|ZP_06507957.1| LOW QUALITY PROTEIN: hypothetica... 117 6e-25
gi|342859494|ref|ZP_08716148.1| hypothetical protein MCOL_11458 ... 113 9e-24
gi|118466330|ref|YP_884333.1| hypothetical protein MAV_5217 [Myc... 110 7e-23
gi|41409597|ref|NP_962433.1| hypothetical protein MAP3499c [Myco... 109 1e-22
gi|254822826|ref|ZP_05227827.1| hypothetical protein MintA_23044... 105 2e-21
gi|254777562|ref|ZP_05219078.1| hypothetical protein MaviaA2_232... 88.2 4e-16
gi|239612489|gb|EEQ89476.1| alpha-1,2-mannosyltransferase [Ajell... 34.3 5.7
gi|261202916|ref|XP_002628672.1| alpha-1,2-mannosyltransferase [... 34.3 5.7
gi|225684130|gb|EEH22414.1| mannosyltransferase [Paracoccidioide... 34.3 6.4
gi|226293564|gb|EEH48984.1| alpha-1,3-mannosyltransferase alg-2 ... 34.3 7.0
>gi|148821300|ref|YP_001286054.1| hypothetical protein TBFG_10109 [Mycobacterium tuberculosis F11]
gi|253797026|ref|YP_003030027.1| hypothetical protein TBMG_00109 [Mycobacterium tuberculosis KZN
1435]
gi|254233502|ref|ZP_04926828.1| hypothetical protein TBCG_00108 [Mycobacterium tuberculosis C]
gi|124603295|gb|EAY61570.1| hypothetical protein TBCG_00108 [Mycobacterium tuberculosis C]
gi|148719827|gb|ABR04452.1| hypothetical protein TBFG_10109 [Mycobacterium tuberculosis F11]
gi|253318529|gb|ACT23132.1| hypothetical protein TBMG_00109 [Mycobacterium tuberculosis KZN
1435]
gi|323717279|gb|EGB26486.1| hypothetical protein TMMG_00533 [Mycobacterium tuberculosis CDC1551A]
Length=77
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH
Sbjct 9 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 68
Query 61 VGRAHHRIL 69
VGRAHHRIL
Sbjct 69 VGRAHHRIL 77
>gi|308231464|ref|ZP_07412527.2| hypothetical protein TMAG_01240 [Mycobacterium tuberculosis SUMu001]
gi|308378547|ref|ZP_07482954.2| hypothetical protein TMIG_00392 [Mycobacterium tuberculosis SUMu009]
gi|308380896|ref|ZP_07491404.2| hypothetical protein TMKG_01289 [Mycobacterium tuberculosis SUMu011]
gi|308217228|gb|EFO76627.1| hypothetical protein TMAG_01240 [Mycobacterium tuberculosis SUMu001]
gi|308352230|gb|EFP41081.1| hypothetical protein TMIG_00392 [Mycobacterium tuberculosis SUMu009]
gi|308360135|gb|EFP48986.1| hypothetical protein TMKG_01289 [Mycobacterium tuberculosis SUMu011]
Length=80
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH
Sbjct 12 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 71
Query 61 VGRAHHRIL 69
VGRAHHRIL
Sbjct 72 VGRAHHRIL 80
>gi|308370315|ref|ZP_07421046.2| hypothetical protein TMCG_02316 [Mycobacterium tuberculosis SUMu003]
gi|308375069|ref|ZP_07442565.2| hypothetical protein TMGG_01583 [Mycobacterium tuberculosis SUMu007]
gi|308379696|ref|ZP_07487187.2| hypothetical protein TMJG_01291 [Mycobacterium tuberculosis SUMu010]
gi|308332431|gb|EFP21282.1| hypothetical protein TMCG_02316 [Mycobacterium tuberculosis SUMu003]
gi|308347604|gb|EFP36455.1| hypothetical protein TMGG_01583 [Mycobacterium tuberculosis SUMu007]
gi|308356164|gb|EFP45015.1| hypothetical protein TMJG_01291 [Mycobacterium tuberculosis SUMu010]
Length=96
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH
Sbjct 28 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 87
Query 61 VGRAHHRIL 69
VGRAHHRIL
Sbjct 88 VGRAHHRIL 96
>gi|15607250|ref|NP_214622.1| hypothetical protein Rv0108c [Mycobacterium tuberculosis H37Rv]
gi|31791286|ref|NP_853779.1| hypothetical protein Mb0112c [Mycobacterium bovis AF2122/97]
gi|121636021|ref|YP_976244.1| hypothetical protein BCG_0141c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
37 more sequence titles
Length=69
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/69 (99%), Positives = 69/69 (100%), Gaps = 0/69 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
+VPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH
Sbjct 1 MVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
Query 61 VGRAHHRIL 69
VGRAHHRIL
Sbjct 61 VGRAHHRIL 69
>gi|15839489|ref|NP_334526.1| hypothetical protein MT0117 [Mycobacterium tuberculosis CDC1551]
gi|298527499|ref|ZP_07014908.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|340625143|ref|YP_004743595.1| hypothetical protein MCAN_01111 [Mycobacterium canettii CIPT
140010059]
gi|13879596|gb|AAK44340.1| hypothetical protein MT0117 [Mycobacterium tuberculosis CDC1551]
gi|298497293|gb|EFI32587.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|340003333|emb|CCC42452.1| hypothetical protein MCAN_01111 [Mycobacterium canettii CIPT
140010059]
Length=68
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/68 (99%), Positives = 68/68 (100%), Gaps = 0/68 (0%)
Query 2 VPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHV 61
+PVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHV
Sbjct 1 MPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHV 60
Query 62 GRAHHRIL 69
GRAHHRIL
Sbjct 61 GRAHHRIL 68
>gi|183980329|ref|YP_001848620.1| hypothetical protein MMAR_0298 [Mycobacterium marinum M]
gi|183173655|gb|ACC38765.1| conserved protein [Mycobacterium marinum M]
Length=90
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/69 (90%), Positives = 64/69 (93%), Gaps = 0/69 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
LV VE LHSGDPITDVNGGGQRYIVLESK VGD CVVLELESRV+HQLQVIEKSFP GYH
Sbjct 22 LVAVENLHSGDPITDVNGGGQRYIVLESKAVGDGCVVLELESRVDHQLQVIEKSFPTGYH 81
Query 61 VGRAHHRIL 69
VGRA+HRIL
Sbjct 82 VGRANHRIL 90
>gi|240168080|ref|ZP_04746739.1| hypothetical protein MkanA1_02117 [Mycobacterium kansasii ATCC
12478]
Length=69
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/69 (86%), Positives = 64/69 (93%), Gaps = 0/69 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
+V VE LHSGDPITD+NGGGQRYIVLESKTV D CVVLELESRV+H+LQVIEKSFP GYH
Sbjct 1 MVAVENLHSGDPITDINGGGQRYIVLESKTVSDGCVVLELESRVDHRLQVIEKSFPTGYH 60
Query 61 VGRAHHRIL 69
VGRA+HRIL
Sbjct 61 VGRANHRIL 69
>gi|118619870|ref|YP_908202.1| hypothetical protein MUL_4825 [Mycobacterium ulcerans Agy99]
gi|118571980|gb|ABL06731.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=68
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/68 (87%), Positives = 62/68 (92%), Gaps = 0/68 (0%)
Query 2 VPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHV 61
+ VE LHSGDPITDVNGGGQRYIVLESK VGD CVVLELESRV+HQLQVIEKSFP GYHV
Sbjct 1 MAVENLHSGDPITDVNGGGQRYIVLESKAVGDGCVVLELESRVDHQLQVIEKSFPTGYHV 60
Query 62 GRAHHRIL 69
GR +HRIL
Sbjct 61 GRVNHRIL 68
>gi|296167261|ref|ZP_06849664.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897361|gb|EFG76964.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=74
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/69 (87%), Positives = 62/69 (90%), Gaps = 3/69 (4%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
LVPVETLHSGDPI D GQRYIVLESK VGDSCVVLELESRV+HQLQVIEKSFPAGYH
Sbjct 9 LVPVETLHSGDPIMDC---GQRYIVLESKAVGDSCVVLELESRVDHQLQVIEKSFPAGYH 65
Query 61 VGRAHHRIL 69
V RA+HRIL
Sbjct 66 VNRANHRIL 74
>gi|289748579|ref|ZP_06507957.1| LOW QUALITY PROTEIN: hypothetical protein TBDG_00467 [Mycobacterium
tuberculosis T92]
gi|289689166|gb|EFD56595.1| LOW QUALITY PROTEIN: hypothetical protein TBDG_00467 [Mycobacterium
tuberculosis T92]
Length=70
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/58 (99%), Positives = 58/58 (100%), Gaps = 0/58 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAG 58
+VPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAG
Sbjct 1 MVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAG 58
>gi|342859494|ref|ZP_08716148.1| hypothetical protein MCOL_11458 [Mycobacterium colombiense CECT
3035]
gi|342133735|gb|EGT86938.1| hypothetical protein MCOL_11458 [Mycobacterium colombiense CECT
3035]
Length=74
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/68 (84%), Positives = 59/68 (87%), Gaps = 3/68 (4%)
Query 2 VPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHV 61
VPVE LHSGDPITD GQRYIVLESK +GDSCVVLELESRV+H LQVIEKSFPAGY V
Sbjct 10 VPVEKLHSGDPITDC---GQRYIVLESKALGDSCVVLELESRVDHHLQVIEKSFPAGYQV 66
Query 62 GRAHHRIL 69
RAHHRIL
Sbjct 67 DRAHHRIL 74
>gi|118466330|ref|YP_884333.1| hypothetical protein MAV_5217 [Mycobacterium avium 104]
gi|118167617|gb|ABK68514.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336459966|gb|EGO38878.1| hypothetical protein MAPs_46100 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=76
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/69 (83%), Positives = 61/69 (89%), Gaps = 4/69 (5%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
LVPVE LHSGDPITD GQRYIVLESKT+ D CVVLELESRV+HQLQVIEKSFP GYH
Sbjct 12 LVPVENLHSGDPITDC---GQRYIVLESKTLND-CVVLELESRVDHQLQVIEKSFPTGYH 67
Query 61 VGRAHHRIL 69
VGRA+HR+L
Sbjct 68 VGRANHRVL 76
>gi|41409597|ref|NP_962433.1| hypothetical protein MAP3499c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398428|gb|AAS06049.1| hypothetical protein MAP_3499c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=65
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/69 (82%), Positives = 61/69 (89%), Gaps = 4/69 (5%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYH 60
+VPVE LHSGDPITD GQRYIVLESKT+ D CVVLELESRV+HQLQVIEKSFP GYH
Sbjct 1 MVPVENLHSGDPITDC---GQRYIVLESKTLND-CVVLELESRVDHQLQVIEKSFPTGYH 56
Query 61 VGRAHHRIL 69
VGRA+HR+L
Sbjct 57 VGRANHRVL 65
>gi|254822826|ref|ZP_05227827.1| hypothetical protein MintA_23044 [Mycobacterium intracellulare
ATCC 13950]
Length=73
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/68 (81%), Positives = 58/68 (86%), Gaps = 4/68 (5%)
Query 2 VPVETLHSGDPITDVNGGGQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHV 61
VPVE LHSGDPITD GQRYIVLESK + D CVVLELESRV+HQLQVIEKSFP GY V
Sbjct 10 VPVEKLHSGDPITDC---GQRYIVLESKALSD-CVVLELESRVDHQLQVIEKSFPTGYQV 65
Query 62 GRAHHRIL 69
GRA+HRIL
Sbjct 66 GRANHRIL 73
>gi|254777562|ref|ZP_05219078.1| hypothetical protein MaviaA2_23236 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=52
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 47/50 (94%), Gaps = 1/50 (2%)
Query 20 GQRYIVLESKTVGDSCVVLELESRVNHQLQVIEKSFPAGYHVGRAHHRIL 69
GQRYIVLESKT+ D CVVLELESRV+HQLQVIEKSFP GYHVGRA+HR+L
Sbjct 4 GQRYIVLESKTLND-CVVLELESRVDHQLQVIEKSFPTGYHVGRANHRVL 52
>gi|239612489|gb|EEQ89476.1| alpha-1,2-mannosyltransferase [Ajellomyces dermatitidis ER-3]
gi|327350546|gb|EGE79403.1| alpha-1,2-mannosyltransferase [Ajellomyces dermatitidis ATCC
18188]
Length=506
Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKT 30
+VPVE +H+G P+ VN GG ++E KT
Sbjct 377 IVPVEAMHAGLPVLAVNNGGPLETIVEGKT 406
>gi|261202916|ref|XP_002628672.1| alpha-1,2-mannosyltransferase [Ajellomyces dermatitidis SLH14081]
gi|239590769|gb|EEQ73350.1| alpha-1,2-mannosyltransferase [Ajellomyces dermatitidis SLH14081]
Length=506
Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKT 30
+VPVE +H+G P+ VN GG ++E KT
Sbjct 377 IVPVEAMHAGLPVLAVNNGGPLETIVEGKT 406
>gi|225684130|gb|EEH22414.1| mannosyltransferase [Paracoccidioides brasiliensis Pb03]
Length=466
Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKT 30
+VPVE +H+G P+ VN GG ++E KT
Sbjct 337 IVPVEAMHAGLPVLAVNNGGPLETIVEGKT 366
>gi|226293564|gb|EEH48984.1| alpha-1,3-mannosyltransferase alg-2 [Paracoccidioides brasiliensis
Pb18]
Length=443
Score = 34.3 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
Query 1 LVPVETLHSGDPITDVNGGGQRYIVLESKT 30
+VPVE +H+G P+ VN GG ++E KT
Sbjct 314 IVPVEAMHAGLPVLAVNNGGPLETIVEGKT 343
Lambda K H
0.319 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128671965800
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40