BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0117 Length=314 Score E Sequences producing significant alignments: (Bits) Value gi|15839498|ref|NP_334535.1| LysR family transcriptional regulat... 635 4e-180 gi|15607259|ref|NP_214631.1| oxidative stress response regulator... 634 8e-180 gi|289760217|ref|ZP_06519595.1| transcriptional regulator [Mycob... 632 2e-179 gi|289572697|ref|ZP_06452924.1| oxidative stress response regula... 632 3e-179 gi|340625152|ref|YP_004743604.1| oxidative stress response regul... 632 3e-179 gi|289445647|ref|ZP_06435391.1| oxidative stress response regula... 628 3e-178 gi|240168105|ref|ZP_04746764.1| oxidative stress response regula... 523 1e-146 gi|183980348|ref|YP_001848639.1| oxidative stress response regul... 520 9e-146 gi|15828435|ref|NP_302698.1| LysR family transcriptional regulat... 514 8e-144 gi|342859470|ref|ZP_08716124.1| OxyS_1 [Mycobacterium colombiens... 490 1e-136 gi|41409620|ref|NP_962456.1| OxyS_1 [Mycobacterium avium subsp. ... 484 1e-134 gi|254822801|ref|ZP_05227802.1| OxyS_1 [Mycobacterium intracellu... 483 2e-134 gi|336459943|gb|EGO38855.1| transcriptional regulator [Mycobacte... 483 2e-134 gi|118467230|ref|YP_884308.1| LysR family transcriptional regula... 478 5e-133 gi|296167285|ref|ZP_06849688.1| LysR family transcriptional regu... 478 6e-133 gi|118619855|ref|YP_908187.1| oxidative stress response regulato... 431 9e-119 gi|297203647|ref|ZP_06921044.1| transcriptional regulator [Strep... 391 6e-107 gi|118472402|ref|YP_884572.1| LysR family transcriptional regula... 352 5e-95 gi|118464425|ref|YP_884055.1| LysR family transcriptional regula... 319 4e-85 gi|41409774|ref|NP_962610.1| OxyS_2 [Mycobacterium avium subsp. ... 318 1e-84 gi|336460098|gb|EGO39006.1| transcriptional regulator [Mycobacte... 315 6e-84 gi|342859293|ref|ZP_08715947.1| LysR family transcriptional regu... 313 2e-83 gi|254823281|ref|ZP_05228282.1| transcriptional regulator, LysR ... 312 3e-83 gi|239985967|ref|ZP_04706631.1| LysR family transcriptional regu... 287 2e-75 gi|291455498|ref|ZP_06594888.1| transcriptional regulator [Strep... 285 8e-75 gi|296140880|ref|YP_003648123.1| LysR family transcriptional reg... 283 2e-74 gi|297153517|gb|ADI03229.1| transcriptional regulator, LysR fami... 282 5e-74 gi|169628093|ref|YP_001701742.1| LysR family transcriptional reg... 274 1e-71 gi|317508490|ref|ZP_07966157.1| LysR substrate binding domain-co... 273 3e-71 gi|134101043|ref|YP_001106704.1| LysR family transcriptional reg... 259 4e-67 gi|284030099|ref|YP_003380030.1| LysR family transcriptional reg... 251 8e-65 gi|345013294|ref|YP_004815648.1| LysR family transcriptional reg... 244 2e-62 gi|296394290|ref|YP_003659174.1| LysR family transcriptional reg... 242 5e-62 gi|333918602|ref|YP_004492183.1| LysR family transcriptional reg... 220 2e-55 gi|146278888|ref|YP_001169047.1| LysR family transcriptional reg... 214 1e-53 gi|336117619|ref|YP_004572387.1| putative LysR family transcript... 213 3e-53 gi|77464658|ref|YP_354162.1| LysR family transcriptional regulat... 212 8e-53 gi|221640572|ref|YP_002526834.1| transcriptional regulator [Rhod... 211 9e-53 gi|324999408|ref|ZP_08120520.1| transcriptional regulator, LysR ... 211 1e-52 gi|152982152|ref|YP_001355350.1| LysR family transcriptional reg... 211 1e-52 gi|338739541|ref|YP_004676503.1| putative LysR family transcript... 211 2e-52 gi|126463498|ref|YP_001044612.1| LysR family transcriptional reg... 210 3e-52 gi|158421640|ref|YP_001522932.1| transcriptional regulator [Azor... 209 6e-52 gi|134096588|ref|YP_001101663.1| putative transcriptional regula... 207 2e-51 gi|288961315|ref|YP_003451654.1| transcriptional regulator [Azos... 205 6e-51 gi|300022139|ref|YP_003754750.1| LysR family transcriptional reg... 204 2e-50 gi|13474501|ref|NP_106070.1| transcriptional regulator [Mesorhiz... 203 3e-50 gi|345136980|dbj|BAK66589.1| LysR family transcriptional regulat... 203 4e-50 gi|145223182|ref|YP_001133860.1| LysR family transcriptional reg... 202 5e-50 gi|163760122|ref|ZP_02167205.1| probable transcriptional regulat... 202 7e-50 >gi|15839498|ref|NP_334535.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|253797035|ref|YP_003030036.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis KZN 1435] gi|254233509|ref|ZP_04926835.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis C] 18 more sequence titles Length=316 Score = 635 bits (1637), Expect = 4e-180, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE Sbjct 3 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 62 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK Sbjct 63 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 122 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS Sbjct 123 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 182 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI Sbjct 183 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 242 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN Sbjct 243 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 302 Query 301 EFFDTQLRGITRRR 314 EFFDTQLRGITRRR Sbjct 303 EFFDTQLRGITRRR 316 >gi|15607259|ref|NP_214631.1| oxidative stress response regulatory protein OXYS [Mycobacterium tuberculosis H37Rv] gi|31791295|ref|NP_853788.1| oxidative stress response regulatory protein OXYS [Mycobacterium bovis AF2122/97] gi|121636030|ref|YP_976253.1| oxidative stress response regulatory protein oxyS [Mycobacterium bovis BCG str. Pasteur 1173P2] 46 more sequence titles Length=314 Score = 634 bits (1634), Expect = 8e-180, Method: Compositional matrix adjust. Identities = 313/314 (99%), Positives = 314/314 (100%), Gaps = 0/314 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK Sbjct 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS Sbjct 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI Sbjct 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN Sbjct 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 Query 301 EFFDTQLRGITRRR 314 EFFDTQLRGITRRR Sbjct 301 EFFDTQLRGITRRR 314 >gi|289760217|ref|ZP_06519595.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|294992961|ref|ZP_06798652.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis 210] gi|289715781|gb|EFD79793.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|326905876|gb|EGE52809.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis W-148] gi|339293181|gb|AEJ45292.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CCDC5079] gi|339296829|gb|AEJ48939.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CCDC5180] Length=314 Score = 632 bits (1630), Expect = 2e-179, Method: Compositional matrix adjust. Identities = 312/314 (99%), Positives = 314/314 (100%), Gaps = 0/314 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK Sbjct 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQVCSRLAATELYRRLREFEL+AVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS Sbjct 121 VQVCSRLAATELYRRLREFELNAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI Sbjct 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN Sbjct 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 Query 301 EFFDTQLRGITRRR 314 EFFDTQLRGITRRR Sbjct 301 EFFDTQLRGITRRR 314 >gi|289572697|ref|ZP_06452924.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis K85] gi|339630200|ref|YP_004721842.1| oxidative stress response regulatory protein OxyS [Mycobacterium africanum GM041182] gi|289537128|gb|EFD41706.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis K85] gi|339329556|emb|CCC25192.1| oxidative stress response regulatory protein OxyS [Mycobacterium africanum GM041182] Length=314 Score = 632 bits (1629), Expect = 3e-179, Method: Compositional matrix adjust. Identities = 312/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFAR AEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE Sbjct 1 MLFRQLEYFVAVAQERHFARVAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK Sbjct 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS Sbjct 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI Sbjct 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN Sbjct 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 Query 301 EFFDTQLRGITRRR 314 EFFDTQLRGITRRR Sbjct 301 EFFDTQLRGITRRR 314 >gi|340625152|ref|YP_004743604.1| oxidative stress response regulatory protein OXYS [Mycobacterium canettii CIPT 140010059] gi|340003342|emb|CCC42461.1| oxidative stress response regulatory protein OXYS [Mycobacterium canettii CIPT 140010059] Length=314 Score = 632 bits (1629), Expect = 3e-179, Method: Compositional matrix adjust. Identities = 312/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK Sbjct 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS Sbjct 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI Sbjct 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN Sbjct 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 Query 301 EFFDTQLRGITRRR 314 EFFDTQLRGI RRR Sbjct 301 EFFDTQLRGIIRRR 314 >gi|289445647|ref|ZP_06435391.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis CPHL_A] gi|289418605|gb|EFD15806.1| oxidative stress response regulatory protein oxyS [Mycobacterium tuberculosis CPHL_A] Length=314 Score = 628 bits (1620), Expect = 3e-178, Method: Compositional matrix adjust. Identities = 311/314 (99%), Positives = 312/314 (99%), Gaps = 0/314 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTHE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTA LVLSAFCSAHPLAK Sbjct 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTAFLVLSAFCSAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS Sbjct 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI Sbjct 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN Sbjct 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 Query 301 EFFDTQLRGITRRR 314 EFFDTQLRGITRRR Sbjct 301 EFFDTQLRGITRRR 314 >gi|240168105|ref|ZP_04746764.1| oxidative stress response regulatory protein OxyS [Mycobacterium kansasii ATCC 12478] Length=310 Score = 523 bits (1347), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 255/314 (82%), Positives = 280/314 (90%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEH AFKAEVDAVRSG+TGTLRLGTVP+ASTTASLVLS FCSAHPL K Sbjct 61 GERLVVWAKRILAEHDAFKAEVDAVRSGVTGTLRLGTVPSASTTASLVLSGFCSAHPLVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Q+CSRLA+TELYRRLR+FELDA+IVHP T+DS DVD+VPLYEE+YVLL P DM+P G S Sbjct 121 AQICSRLASTELYRRLRDFELDAIIVHPTTEDSRDVDVVPLYEERYVLLVPPDMVPAGAS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DAAQLPLALL+ DMRDRQ+I+AAFA+HA++ PQVETDSVASL AQVATGNWASI Sbjct 181 TVRWPDAAQLPLALLSPDMRDRQIINAAFAEHAITVSPQVETDSVASLIAQVATGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLW + PTGGEIR V LVDP+ KAQI L TN+ GPGSPVARAL+ CAQ L L Sbjct 241 VPHTWLW----TTPTGGEIRPVPLVDPIRKAQIGLVTNSAGPGSPVARALVACAQELDLG 296 Query 301 EFFDTQLRGITRRR 314 EFFD ++ GI+RRR Sbjct 297 EFFDARMSGISRRR 310 >gi|183980348|ref|YP_001848639.1| oxidative stress response regulatory protein OxyS [Mycobacterium marinum M] gi|183173674|gb|ACC38784.1| oxidative stress response regulatory protein OxyS [Mycobacterium marinum M] Length=405 Score = 520 bits (1340), Expect = 9e-146, Method: Compositional matrix adjust. Identities = 257/314 (82%), Positives = 281/314 (90%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLT E Sbjct 96 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTPE 155 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRI+AEH AFKAEVDAVRSGITGTLRLGTVP+ASTTASLVLS FCSAHPL K Sbjct 156 GERLVVWAKRIIAEHDAFKAEVDAVRSGITGTLRLGTVPSASTTASLVLSDFCSAHPLVK 215 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Q+CSRLA TELYRRLR+FELDA IV+ + D DVDLVPLYEE+YVLL+P +MLPPG S Sbjct 216 AQICSRLAVTELYRRLRDFELDAAIVYTSSDDGHDVDLVPLYEERYVLLAPPEMLPPGVS 275 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TL W DAAQLPLALL++DMRDRQ+IDAAFADHA++ PQVETDSVASLFAQVATGN ASI Sbjct 276 TLSWLDAAQLPLALLSSDMRDRQIIDAAFADHAITVSPQVETDSVASLFAQVATGNSASI 335 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLW + P GGEIR V+LV PV+KAQ+ALAT++ GPGSPVARAL+T AQ LAL+ Sbjct 336 VPHTWLW----TTPAGGEIRPVQLVSPVVKAQVALATSSTGPGSPVARALMTSAQGLALD 391 Query 301 EFFDTQLRGITRRR 314 EFF T+L I+RRR Sbjct 392 EFFQTRLMEISRRR 405 >gi|15828435|ref|NP_302698.1| LysR family transcriptional regulator [Mycobacterium leprae TN] gi|221230912|ref|YP_002504328.1| putative LysR family transcriptional regulator [Mycobacterium leprae Br4923] gi|4200252|emb|CAA22900.1| putative LysR-type transcriptional regulator [Mycobacterium leprae] gi|13093865|emb|CAC32195.1| probable LysR family transcriptional regulator [Mycobacterium leprae] gi|219934019|emb|CAR72763.1| probable LysR family transcriptional regulator [Mycobacterium leprae Br4923] Length=310 Score = 514 bits (1323), Expect = 8e-144, Method: Compositional matrix adjust. Identities = 256/314 (82%), Positives = 275/314 (88%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAE+CYVSQPALSSAIAKLERELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVAQERHFARAAERCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAEH AFKAEV AVRSGITGTLRLGTVPTASTTASLVLSAFCS HPL K Sbjct 61 GERLVVWAKRILAEHDAFKAEVHAVRSGITGTLRLGTVPTASTTASLVLSAFCSEHPLIK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+CSRL TEL+RRL +FELDAVIVH D+ VDLVPLY E YVL+SPADMLPPG S Sbjct 121 VQICSRLPVTELHRRLGDFELDAVIVHSAPDDTHAVDLVPLYHEHYVLVSPADMLPPGAS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 L W +A+QLPLALLT DMRDRQ+ID AFA HA++A PQVETDSVASLFAQVATGNWA I Sbjct 181 VLAWPEASQLPLALLTPDMRDRQLIDRAFAGHAITATPQVETDSVASLFAQVATGNWACI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLW P+ G EIRAVE+VDPVLKA +ALATN+ GPGSPVARAL+ A+ LALN Sbjct 241 VPHTWLWTTPI----GAEIRAVEMVDPVLKADVALATNSAGPGSPVARALVASAKQLALN 296 Query 301 EFFDTQLRGITRRR 314 EFF+ QL GITRRR Sbjct 297 EFFEAQLAGITRRR 310 >gi|342859470|ref|ZP_08716124.1| OxyS_1 [Mycobacterium colombiense CECT 3035] gi|342133711|gb|EGT86914.1| OxyS_1 [Mycobacterium colombiense CECT 3035] Length=310 Score = 490 bits (1262), Expect = 1e-136, Method: Compositional matrix adjust. Identities = 246/314 (79%), Positives = 276/314 (88%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVA ERHFARAAEKC+VSQPALS+AIAKLERELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVASERHFARAAEKCFVSQPALSAAIAKLERELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWA+RILAEH AFK+EVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPL K Sbjct 61 GERLVVWARRILAEHDAFKSEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V + SRLAATELYRRLREFE+DA IVH ++ DV+LVPLY+E+YVLL+PADM+ G + Sbjct 121 VHILSRLAATELYRRLREFEIDAAIVHASPDEAHDVNLVPLYQERYVLLAPADMVGSGAA 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W +AAQLPLALLT DMRDRQ+ID AFADH+++ PQVETDSVASLFAQ + GNWASI Sbjct 181 TMAWAEAAQLPLALLTPDMRDRQIIDKAFADHSITVSPQVETDSVASLFAQASAGNWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLW P+ G +IRAVE+VDPVLKA +ALATN+ GPGSP+ARAL T A L+LN Sbjct 241 VPHTWLWTSPL----GPDIRAVEMVDPVLKADVALATNSSGPGSPIARALATSAGQLSLN 296 Query 301 EFFDTQLRGITRRR 314 EFFD QL G+TRRR Sbjct 297 EFFDAQLLGLTRRR 310 >gi|41409620|ref|NP_962456.1| OxyS_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398451|gb|AAS06072.1| OxyS_1 [Mycobacterium avium subsp. paratuberculosis K-10] Length=312 Score = 484 bits (1245), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 241/314 (77%), Positives = 266/314 (85%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 VLFRQLEYFVAVA ERHFARAAEKC+VSQPALS+AIAKLE+ELNVTLINRGHSFEGLT E Sbjct 3 VLFRQLEYFVAVASERHFARAAEKCFVSQPALSAAIAKLEKELNVTLINRGHSFEGLTPE 62 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWA+RILAEH AFKAEVDAVRSG+TGTLRLGTVPTASTTASL+LSAFCSAHPL K Sbjct 63 GERLVVWARRILAEHDAFKAEVDAVRSGVTGTLRLGTVPTASTTASLLLSAFCSAHPLVK 122 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ SRL+A ELYRRLREFELDA I H D DV+LVPLY E+YVLL+PAD+L G + Sbjct 123 VQILSRLSAGELYRRLREFELDAAIAHTAPDDIPDVNLVPLYRERYVLLAPADLLASGAA 182 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W AAQLPLALLT DMRDRQ+ID AFADH ++ PQVETDSVASLFAQ + G+WASI Sbjct 183 TMTWVQAAQLPLALLTPDMRDRQIIDRAFADHGITLHPQVETDSVASLFAQASAGSWASI 242 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWA P+ G IRAVELVDPVL A + LAT + GPGSP+ARAL A L LN Sbjct 243 VPHTWLWASPL----GAGIRAVELVDPVLTADVVLATKSHGPGSPIARALAASAGRLQLN 298 Query 301 EFFDTQLRGITRRR 314 +FFD QL G+TRRR Sbjct 299 DFFDAQLLGVTRRR 312 >gi|254822801|ref|ZP_05227802.1| OxyS_1 [Mycobacterium intracellulare ATCC 13950] Length=309 Score = 483 bits (1243), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 249/314 (80%), Positives = 270/314 (86%), Gaps = 5/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVA ERHFARAAEKC+VSQPALS+AIAKLERELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVASERHFARAAEKCFVSQPALSAAIAKLERELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWA+RILAEH AFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPL K Sbjct 61 GERLVVWARRILAEHDAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ SRLAATELYRRLREFELDA IVH D DV+LVPLY+E+YVLLSPA+ML G + Sbjct 121 VQILSRLAATELYRRLREFELDAAIVH-AAPDEADVNLVPLYQERYVLLSPAEMLGSGAA 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W AAQLPLALLT DMRDRQ+ID AF DH ++ PQVETDSVASLFAQ + G WASI Sbjct 180 TMTWAQAAQLPLALLTPDMRDRQIIDKAFDDHGITVSPQVETDSVASLFAQASAGKWASI 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLW P+ G E+RAVE+VDPVLKA + LATNA GPGSP+ARAL A LALN Sbjct 240 VPHTWLWTSPL----GPEVRAVEMVDPVLKADVVLATNASGPGSPIARALAASAAGLALN 295 Query 301 EFFDTQLRGITRRR 314 EFFD QL G+TRRR Sbjct 296 EFFDAQLLGVTRRR 309 >gi|336459943|gb|EGO38855.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=310 Score = 483 bits (1242), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 240/314 (77%), Positives = 266/314 (85%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVA ERHFARAAEKC+VSQPALS+AIAKLE+ELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVASERHFARAAEKCFVSQPALSAAIAKLEKELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWA+RILAEH AFKAEVDAVRSG+TGTLRLGTVPTASTTASL+LSAFCSAHPL K Sbjct 61 GERLVVWARRILAEHDAFKAEVDAVRSGVTGTLRLGTVPTASTTASLLLSAFCSAHPLVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ SRL+A ELYRRLREFELDA I H D DV+LVPLY E+YVLL+PAD+L G + Sbjct 121 VQILSRLSAGELYRRLREFELDAAIAHTAPDDIPDVNLVPLYRERYVLLAPADLLASGAA 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W AAQLPLALLT DMRDRQ+ID AFADH ++ PQVETDSVASLFAQ + G+WASI Sbjct 181 TMTWVQAAQLPLALLTPDMRDRQIIDRAFADHGITLHPQVETDSVASLFAQASAGSWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWA P+ G IRAVELVDPVL A + LAT + GPGSP+ARAL A L LN Sbjct 241 VPHTWLWASPL----GAGIRAVELVDPVLTADVVLATKSHGPGSPIARALAASAGRLQLN 296 Query 301 EFFDTQLRGITRRR 314 +FFD QL G+TRRR Sbjct 297 DFFDAQLLGVTRRR 310 >gi|118467230|ref|YP_884308.1| LysR family transcriptional regulator [Mycobacterium avium 104] gi|254777538|ref|ZP_05219054.1| transcriptional regulator, LysR family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118168517|gb|ABK69414.1| transcriptional regulator, LysR family protein [Mycobacterium avium 104] Length=310 Score = 478 bits (1230), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 238/314 (76%), Positives = 265/314 (85%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVA ERHFARAAEKC+VSQPALS+AIAKLE+ELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVASERHFARAAEKCFVSQPALSAAIAKLEKELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWA+RILAEH AFKAEVDAVRSG+TGTLRLGTVPTASTTASL+LSAFCSAHPL K Sbjct 61 GERLVVWARRILAEHDAFKAEVDAVRSGVTGTLRLGTVPTASTTASLLLSAFCSAHPLVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ SRL+A ELYRRLREFELDA I H D DV+LVP+Y E+YVLL+PAD+L G + Sbjct 121 VQILSRLSAGELYRRLREFELDAAIAHTAPDDIPDVNLVPVYRERYVLLAPADLLASGAA 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W AAQLPLALLT DMRDRQ+ID AFADH ++ PQVETDSVASLFAQ + G+WASI Sbjct 181 TMTWVQAAQLPLALLTPDMRDRQIIDRAFADHGITLHPQVETDSVASLFAQASAGSWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLWA P+ G IRAVELVDPVL A + LA + GPGSP+ARAL A L LN Sbjct 241 VPHTWLWASPL----GPGIRAVELVDPVLTADVVLAIKSHGPGSPIARALAASAGRLQLN 296 Query 301 EFFDTQLRGITRRR 314 +FFD QL G+TRRR Sbjct 297 DFFDAQLLGVTRRR 310 >gi|296167285|ref|ZP_06849688.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897385|gb|EFG76988.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=310 Score = 478 bits (1229), Expect = 6e-133, Method: Compositional matrix adjust. Identities = 246/314 (79%), Positives = 267/314 (86%), Gaps = 4/314 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKC+VSQPALS+AIAKLERELNVTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCFVSQPALSAAIAKLERELNVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWA+RILAEH AFKAEV AVRSGITG LRLGTVPTASTTASLVLSAFCSAHPLAK Sbjct 61 GERLVVWARRILAEHDAFKAEVHAVRSGITGMLRLGTVPTASTTASLVLSAFCSAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V + SRLA TEL+RRLREFELDA IVH ++ DV LVPLYEE YVLLSPADML + Sbjct 121 VHILSRLAGTELHRRLREFELDAAIVHAAPDEAHDVSLVPLYEEHYVLLSPADMLGSAAA 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W +AAQLPLALLT DMRDRQ+ID AFADH + PQVETDSVASLFAQVA GNWA I Sbjct 181 AMTWPEAAQLPLALLTPDMRDRQIIDKAFADHDIEVTPQVETDSVASLFAQVAAGNWACI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWLW + P G E+RAVE+VDPVLKA+IALATN+ GPGSP+ARAL A L+L+ Sbjct 241 VPHTWLW----TSPLGPEVRAVEMVDPVLKAEIALATNSAGPGSPIARALAASAAQLSLD 296 Query 301 EFFDTQLRGITRRR 314 EFFD QL IT RR Sbjct 297 EFFDAQLSRITHRR 310 >gi|118619855|ref|YP_908187.1| oxidative stress response regulatory protein OxyS [Mycobacterium ulcerans Agy99] gi|118571965|gb|ABL06716.1| oxidative stress response regulatory protein OxyS [Mycobacterium ulcerans Agy99] Length=252 Score = 431 bits (1107), Expect = 9e-119, Method: Compositional matrix adjust. Identities = 211/250 (85%), Positives = 227/250 (91%), Gaps = 0/250 (0%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLEREL+VTLINRGHSFEGLT E Sbjct 1 MLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELHVTLINRGHSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRI+AEH AFKAEVDAVRSGITGTLRLGTV +ASTTASLVLS FCSAHPL K Sbjct 61 GERLVVWAKRIIAEHDAFKAEVDAVRSGITGTLRLGTVRSASTTASLVLSDFCSAHPLVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Q+CSRLA TELYRRLR+FE DA IV+ + D DVDLVPLYEE+YVLL+P +MLPPG S Sbjct 121 AQICSRLAVTELYRRLRDFERDAAIVYTSSDDGHDVDLVPLYEERYVLLAPPEMLPPGVS 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 TL W DAAQLPLALL++DMRDRQ+IDAAFADHA++ PQVETDSVASLFAQVATGN ASI Sbjct 181 TLSWLDAAQLPLALLSSDMRDRQIIDAAFADHAITVSPQVETDSVASLFAQVATGNSASI 240 Query 241 VPHTWLWAMP 250 VPHTWLW P Sbjct 241 VPHTWLWTTP 250 >gi|297203647|ref|ZP_06921044.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197717219|gb|EDY61253.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length=310 Score = 391 bits (1005), Expect = 6e-107, Method: Compositional matrix adjust. Identities = 198/303 (66%), Positives = 240/303 (80%), Gaps = 4/303 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVAVA+ERHFARAAE CYVSQPALS+AIAKLERELNVTLINRGH+++GLT E Sbjct 1 MLFRQLEYFVAVARERHFARAAESCYVSQPALSAAIAKLERELNVTLINRGHNYQGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKRILAE AFKAEV AV+SGITGTLRLGT PTASTT +L ++AFC+AHPLAK Sbjct 61 GERLVVWAKRILAEQDAFKAEVAAVQSGITGTLRLGTDPTASTTLALPVAAFCAAHPLAK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQV SRL+ EL+R+LR++ELD I H + D + + +VPLY+E+Y+LL D L ++ Sbjct 121 VQVRSRLSTKELHRQLRDYELDVAIAHFDPDDQEGLQVVPLYQERYMLLVSDDQLVAQSA 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DAAQLPLALLT DMR RQ++D FA+ PQVETDS+ASL+A V G WASI Sbjct 181 TVSWADAAQLPLALLTPDMRIRQIVDTVFAEKGYVVTPQVETDSIASLYAHVGGGGWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWL AMP+ G T RA+ LVDP AQ+++A +A PGS ARA + A +L+L+ Sbjct 241 VPHTWLRAMPVVGRT----RALPLVDPEAGAQVSVAIHAATPGSVAARAFVNAATSLSLD 296 Query 301 EFF 303 +FF Sbjct 297 DFF 299 >gi|118472402|ref|YP_884572.1| LysR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173689|gb|ABK74585.1| transcriptional regulator, LysR family protein [Mycobacterium smegmatis str. MC2 155] Length=308 Score = 352 bits (903), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 190/306 (63%), Positives = 230/306 (76%), Gaps = 5/306 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +L RQLEYFVAVA+ERHFARAAE CYVSQPALS+AIAKLEREL+VTLI+RG +FEGLT E Sbjct 1 MLLRQLEYFVAVARERHFARAAEVCYVSQPALSTAIAKLERELDVTLIHRGQNFEGLTLE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLVVWAKR+LAEH KAE A+R+GI+GTLRLGT PT STT ++ ++AFC+ HP A Sbjct 61 GERLVVWAKRLLAEHDGLKAEAAALRTGISGTLRLGTGPTVSTTTAIPVAAFCNLHPKAN 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V + SRL++ EL R+LR+FELDA I H +D +++VPLY+E+YVLL D L PGT Sbjct 121 VSISSRLSSAELLRQLRDFELDAAIAHFGPEDRAGLEVVPLYKERYVLLVSGDQLAPGTR 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W DAAQLPLALL MR RQ ID AFA++ V+ PQVETDSVASL+A VATG WAS+ Sbjct 181 AITWSDAAQLPLALLEPHMRFRQFIDKAFAENGVTPSPQVETDSVASLYALVATGAWASV 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHTWL A+P G RAV L++P AQI+LA +A GS ARA + A L+ Sbjct 241 VPHTWLRAVPQLGAA----RAVRLIEPETTAQISLAIHAGR-GSAAARAFVNVAAGARLD 295 Query 301 EFFDTQ 306 + FD Q Sbjct 296 DQFDLQ 301 >gi|118464425|ref|YP_884055.1| LysR family transcriptional regulator [Mycobacterium avium 104] gi|254777372|ref|ZP_05218888.1| transcriptional regulator, LysR family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118165712|gb|ABK66609.1| transcriptional regulator, LysR family protein [Mycobacterium avium 104] Length=309 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 159/303 (53%), Positives = 214/303 (71%), Gaps = 4/303 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVA+A ERHFARAA CYVSQPALS AI KLE+ELNV L+ RG FEGLT E Sbjct 1 MLFRQLEYFVALASERHFARAARACYVSQPALSEAIRKLEQELNVPLVRRGQKFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLV+WA+RILA+H A K EV A+++G+TG LRLG +P AS+ +L+ FC+AHPL + Sbjct 61 GERLVLWARRILADHDALKQEVAALQTGLTGELRLGVIPAASSIVALLTDPFCAAHPLVR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ + L + E+ +RLR FELDA +++P+ QD D+ + PLY EQ VL++ A++LP + Sbjct 121 VQLETSLRSAEIVQRLRRFELDAGVLYPDRQDVADLLVTPLYTEQQVLIAGAELLPDPSE 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DA LP+ LL MR R++ID A A ++ PQ+ETDSVA+L A V TG WASI Sbjct 181 TISWSDALTLPMCLLNQGMRGRRLIDDALAAQELTVTPQLETDSVATLLAHVGTGRWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 +P TW+ + + P G I + L +P + A +AL T+A PGS + RAL+ A+ +N Sbjct 241 IPQTWIHS--LRPPAGARI--LRLENPTVTATVALVTSATEPGSVLTRALVQTARGAGIN 296 Query 301 EFF 303 + Sbjct 297 DVL 299 >gi|41409774|ref|NP_962610.1| OxyS_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398606|gb|AAS06226.1| OxyS_2 [Mycobacterium avium subsp. paratuberculosis K-10] Length=309 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 159/303 (53%), Positives = 214/303 (71%), Gaps = 4/303 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVA+A ERHFARAA CYVSQPALS AI KLE+ELNV L+ RG FEGLT E Sbjct 1 MLFRQLEYFVALASERHFARAARACYVSQPALSEAIRKLEQELNVPLVRRGQKFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLV+WA+RILA+H A K EV A+++G+TG LRLG +P AS+ +L+ FC+AHPL + Sbjct 61 GERLVLWARRILADHDALKQEVAALQTGLTGELRLGVIPAASSIVALLTDPFCAAHPLVR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ + L + E+ +RLR FELDA +++P+ QD D+ + PLY EQ VL++ A++LP + Sbjct 121 VQLETSLRSAEIVQRLRRFELDAGVLYPDRQDVADLLVTPLYTEQQVLIAGAELLPDPSE 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DA LP+ LL MR R++ID A A ++ PQ+ETDSVA+L A V TG WASI Sbjct 181 TISWSDALTLPMCLLNQGMRGRRLIDDALAALELTVTPQLETDSVATLLAHVGTGRWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 +P TW+ + + P G I + L +P + A +AL T+A PGS + RAL+ A+ +N Sbjct 241 IPQTWIHS--LRPPAGARI--LRLENPTVTATVALVTSATEPGSVLTRALVQTARGAGIN 296 Query 301 EFF 303 + Sbjct 297 DVL 299 >gi|336460098|gb|EGO39006.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=309 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 158/303 (53%), Positives = 213/303 (71%), Gaps = 4/303 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVA+A ERHFARAA CYVSQPALS AI KLE+ELNV L+ RG FEGLT E Sbjct 1 MLFRQLEYFVALASERHFARAARACYVSQPALSEAIRKLEQELNVPLVRRGQKFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLV+WA+RILA+H A K EV A+++G+TG LRLG +P AS+ +L+ FC+AHPL + Sbjct 61 GERLVLWARRILADHDALKQEVAALQTGLTGELRLGVIPAASSIVALLTDPFCAAHPLVR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ + L + E+ +RLR FELDA +++P+ QD D+ + PLY EQ VL++ A++LP + Sbjct 121 VQLETSLRSAEIVQRLRRFELDAGVLYPDRQDVADLLVTPLYTEQQVLIAGAELLPDPSE 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DA LP+ LL MR R++ID A A ++ PQ+ET SVA+L A V TG WASI Sbjct 181 TISWSDALTLPMCLLNQGMRGRRLIDDALAALELTVTPQLETGSVATLLAHVGTGRWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 +P TW+ + + P G I + L +P + A +AL T+A PGS + RAL+ A+ +N Sbjct 241 IPQTWIHS--LRPPAGARI--LRLENPTVTATVALVTSATEPGSVLTRALVQTARGAGIN 296 Query 301 EFF 303 + Sbjct 297 DVL 299 >gi|342859293|ref|ZP_08715947.1| LysR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342133534|gb|EGT86737.1| LysR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=308 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 163/290 (57%), Positives = 204/290 (71%), Gaps = 4/290 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFV++AQERHFARAA CYVSQPALS AI KLE ELNV L+ RG FEGLT E Sbjct 6 MLFRQLEYFVSLAQERHFARAARACYVSQPALSEAIRKLESELNVPLVRRGQKFEGLTPE 65 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLV WA+RILA+ + K EV A+R+G+TG LRLG VP ASTT +L+ FC+AHPL + Sbjct 66 GERLVPWARRILADRDSLKQEVTALRAGLTGELRLGVVPAASTTVALLTDPFCAAHPLVR 125 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ L + + R+R+FELDA I++P+ QD+ D+ + PLY EQ VL++ A++L Sbjct 126 VQLEVNLRSAGIVERVRKFELDAGILYPDQQDTADLLVTPLYHEQPVLIAAAELLGGEAK 185 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DA +LPL LLT MR R+VID A A H + PQ+ETDSVA+LFA V TG WASI Sbjct 186 TMAWSDAVRLPLCLLTQGMRGRRVIDDALATHGLQVTPQLETDSVAALFAHVRTGRWASI 245 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARAL 290 VP W+ + P G + + L P + A IAL TN PGS +ARAL Sbjct 246 VPQPWIHT--LGAPAG--VNVLRLRRPSVTALIALVTNRAEPGSLLARAL 291 >gi|254823281|ref|ZP_05228282.1| transcriptional regulator, LysR family protein [Mycobacterium intracellulare ATCC 13950] Length=303 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 164/295 (56%), Positives = 208/295 (71%), Gaps = 4/295 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVA+AQERHFARAA CYVSQPALS AI KLE ELNV L+ RG FEGLT E Sbjct 1 MLFRQLEYFVALAQERHFARAARACYVSQPALSEAIRKLESELNVPLVRRGQRFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLV WA+RILA+ + K EV A+++G+TG LRLG VP ASTT +L+ FC+AHPL + Sbjct 61 GERLVPWARRILADRDSLKREVTALQAGLTGELRLGVVPAASTTVALLTDPFCAAHPLVR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V++ L + + R+R+FELDA I++P+ QD+ D+ + PLY EQ VL++ A++L + Sbjct 121 VRLEVNLRSAGIVERVRKFELDAGILYPDQQDTADLLVTPLYHEQPVLIAAAELLGGESD 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W DA QLPL LLT MR R+VID A A H + PQ+ETDSVA+LFA V TG WASI Sbjct 181 TIAWSDAVQLPLCLLTQGMRGRRVIDDALATHGLEVTPQLETDSVAALFAHVRTGRWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQ 295 VP W+ + + P G + + L P + A IAL TN PGS +ARAL A+ Sbjct 241 VPQPWIHTLGI--PAGASV--LRLRRPSVTALIALVTNRAEPGSLLARALRRTAR 291 >gi|239985967|ref|ZP_04706631.1| LysR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291442908|ref|ZP_06582298.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291345855|gb|EFE72759.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length=305 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/290 (53%), Positives = 202/290 (70%), Gaps = 4/290 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEY VA+++ERHFARAA+ C+VSQPALS A+ KLE EL+V L+ RG +EGLT E Sbjct 1 MLFRQLEYLVALSRERHFARAAQACHVSQPALSEAVRKLEDELDVPLVLRGRKYEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+VVWA+RILA+ A +E +R+G++G LR+G+VPTAS T +L+ + FC AHPL Sbjct 61 GERIVVWAQRILADRDALTSEAGHLRTGLSGRLRIGSVPTASGTVALLTAPFCLAHPLVT 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V+V L +T++ R+LR+FE+DA I + + VPLYEE+YVLL+ A P + Sbjct 121 VEVIGDLQSTDVLRQLRDFEIDAGITYLHEDLGEQYRTVPLYEERYVLLTGAADAPAHRT 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 W +AA+LPL LLT M+ R+V+D FA+ V P+VETDSVA+LFA V TG WAS+ Sbjct 181 AATWAEAARLPLCLLTEAMQGRRVLDEVFAEAGVRPSPRVETDSVATLFAHVRTGRWASV 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARAL 290 VPHTWL + P G +RAV LV+P + L T A PGS +ARAL Sbjct 241 VPHTWLHVFGV--PHG--MRAVPLVEPAGAVPVGLVTVAREPGSVLARAL 286 >gi|291455498|ref|ZP_06594888.1| transcriptional regulator [Streptomyces albus J1074] gi|291358447|gb|EFE85349.1| transcriptional regulator [Streptomyces albus J1074] Length=309 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 152/297 (52%), Positives = 208/297 (71%), Gaps = 8/297 (2%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEY VA+++E HFARAA+ C+VSQPALS A+ KLE EL+V L+ RG +EGLT E Sbjct 1 MLFRQLEYLVALSREHHFARAAQACHVSQPALSEALRKLEEELDVQLVRRGRKYEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+VVWA+RILA+ A K EV A+R+G++G +R+G+VPTAS SL+ + F +AHPL Sbjct 61 GERIVVWAQRILADRDALKDEVGALRTGLSGRMRIGSVPTASGAVSLLTAPFTAAHPLVT 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPA--DMLPPG 178 V+V + L + ++ R+LR FE+DA I + ++V +PLY+E+YVLL+ A D+ Sbjct 121 VEVVTDLRSQDILRQLRNFEIDAGITYLRPGLPENVATLPLYQERYVLLTSAADDLARRA 180 Query 179 TSTLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWA 238 ++T W +A+ LPL LLT M+ RQV+D FA+ + +P+V TDSVA+LFA V TGNWA Sbjct 181 SAT--WAEASLLPLCLLTEAMQGRQVVDQVFAEAGLRPVPRVGTDSVATLFAHVRTGNWA 238 Query 239 SIVPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQ 295 S+VPHTWL + P G +RA+ LVDPV + L A PGS +ARAL A+ Sbjct 239 SVVPHTWLHVFGV--PHG--MRALPLVDPVRAVPVGLVVTAREPGSAMARALTEVAR 291 >gi|296140880|ref|YP_003648123.1| LysR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029014|gb|ADG79784.1| transcriptional regulator, LysR family [Tsukamurella paurometabola DSM 20162] Length=302 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/302 (51%), Positives = 203/302 (68%), Gaps = 12/302 (3%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEYFVA+A+ERHFARAA CYVSQPALS AI KLEREL+V L+ RG SFEGLT E Sbjct 1 MLFRQLEYFVALARERHFARAASACYVSQPALSEAIRKLERELDVPLVLRGSSFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERLV WA+RILA+ A + EV A+R+G+TG L LG +P A+T+A+ + FC+AHPL + Sbjct 61 GERLVPWARRILADRDALEHEVTALRTGLTGELTLGVIPAAATSATQLTDPFCAAHPLVR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V++ + L + ++ R+R FELDA I++P+ D+D + + PLY +++V+L+ D+LP G Sbjct 121 VRMWAGLRSADVVERIRRFELDAGIIYPDGIDADGLTVTPLYTDRHVVLAHEDLLPEGDG 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 L W DAAQLP+ LL + MR R +ID H V P++E+DSVA+L A V G WA+I Sbjct 181 ALSWSDAAQLPMCLLHSGMRGRDLIDEVATAHGVRFAPRLESDSVATLVAMVGAGRWATI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPV--------LKAQIALATNALGPGSPVARALIT 292 VP WL P+ + R VEL P L A++AL A P S +ARAL Sbjct 241 VPRAWL--ATYRAPS--DTRVVELAAPPGELGDRAELAARVALVRQAGEPESVLARALAD 296 Query 293 CA 294 A Sbjct 297 SA 298 >gi|297153517|gb|ADI03229.1| transcriptional regulator, LysR family protein [Streptomyces bingchenggensis BCW-1] Length=317 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 149/295 (51%), Positives = 196/295 (67%), Gaps = 4/295 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +L RQLEY VA+A+ RHFA+AA+ C+VSQPALS I KLE EL + L+ RG F+G T E Sbjct 1 MLLRQLEYLVALARARHFAKAAQACFVSQPALSEGIRKLEEELGIPLVQRGRRFDGFTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+V+WA+RILA+ A + E+ A+R+G++G LR+GTVPTAST +L+ FC+A+PLA Sbjct 61 GERVVLWAQRILADRDAMRGEIQALRAGLSGRLRIGTVPTASTAVALLTQPFCAANPLAT 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQV + L A ++ RLR +ELDA + + + + D VPLY E++VLL+ G + Sbjct 121 VQVFADLQAEDIVNRLRTYELDAAVTYHSSVAAHDFKFVPLYRERHVLLTQRSAPDSGAA 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W +AAQ PL LL M+ RQV+DA F VS P+VETDS+ASLFAQV G WASI Sbjct 181 EISWEEAAQYPLCLLHPMMQGRQVLDAVFETVGVSVTPRVETDSIASLFAQVRAGQWASI 240 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQ 295 VPH WL G GG +RAV LV PV +I L A P S + +ALI + Sbjct 241 VPHAWLHVF---GVPGG-MRAVPLVRPVRTERIGLVLPAREPVSVIGQALIDVVE 291 >gi|169628093|ref|YP_001701742.1| LysR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169240060|emb|CAM61088.1| Transcriptional regulator, LysR family [Mycobacterium abscessus] Length=296 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/288 (52%), Positives = 193/288 (68%), Gaps = 4/288 (1%) Query 3 FRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREGE 62 FRQLEYFVA+A+ERHFARAA CYVSQPALS AI KLE EL V L+ RG +FEGLT EG+ Sbjct 3 FRQLEYFVALARERHFARAASACYVSQPALSEAIRKLEHELGVPLVLRGSNFEGLTPEGD 62 Query 63 RLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKVQ 122 RLV+WA+RILA+ A + EV A+RSG+TG LRLG VP A+T +L+ A C+ HPL +V+ Sbjct 63 RLVLWARRILADRDALEHEVTALRSGLTGELRLGVVPGAATRVALMADALCAEHPLVRVR 122 Query 123 VCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTSTL 182 + S L + E+ R+R FELDA +V+ + +D ++L LYEE+YVL++ +L + Sbjct 123 IESSLRSVEILDRIRRFELDAGVVYDDGLQTDGLELTRLYEERYVLVAGDGLLRDAHDPI 182 Query 183 VWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIVP 242 W +A LP+ LL MRDR ID A A+H ++ P++E DSVA+L A V TG WA+IV Sbjct 183 DWSEALSLPMCLLHKGMRDRDRIDEAAAEHGLAVSPRLEADSVATLLALVGTGRWAAIVA 242 Query 243 HTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARAL 290 TW + P G R VEL P L + +AL A P S +ARAL Sbjct 243 RTWF---ATAAPPAG-TRTVELQAPTLGSPVALVRAAGDPASLLARAL 286 >gi|317508490|ref|ZP_07966157.1| LysR substrate binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253181|gb|EFV12584.1| LysR substrate binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length=295 Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/298 (48%), Positives = 200/298 (68%), Gaps = 5/298 (1%) Query 3 FRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREGE 62 RQLEYFV +A ERHF +AAE C+VSQPA S A+AKLEREL V L+ RGH+FEGLT EGE Sbjct 3 LRQLEYFVTLAAERHFTKAAELCHVSQPAFSEALAKLERELGVPLVRRGHAFEGLTPEGE 62 Query 63 RLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKVQ 122 RL+VWA+R+LA+H A +AE A+R+G++G R+GTVP AS A+ +++ FC+ HPLA V+ Sbjct 63 RLLVWARRLLADHDAMRAEAVALRAGVSGQARIGTVPGASVAATRLIAPFCARHPLATVR 122 Query 123 VCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTSTL 182 + + LA+ EL RR+REFELDA + + + + + +PLYEE+YVLL+P +L T ++ Sbjct 123 LETHLASAELLRRVREFELDAGVTFLD-ESTAGLPSLPLYEERYVLLAPRRLLAAETGSI 181 Query 183 VWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIVP 242 W A+ LP+A L A MR R ++D A A VS VETDS+ SL A TG W+++ P Sbjct 182 TWAQASALPMAALVAGMRGRALVDEACAKAGVSISVHVETDSLDSLCALAGTGRWSTVAP 241 Query 243 HTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 +W A + GG+ + LV+P + ++ L A P P+ +AL+ A+ L L+ Sbjct 242 ASWAQAWEL----GGDTAVIPLVEPAVVTRMGLVFAAGSPTPPLTKALVEAARGLRLS 295 >gi|134101043|ref|YP_001106704.1| LysR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009533|ref|ZP_06567506.1| LysR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913666|emb|CAM03779.1| transcriptional regulator (LysR family) [Saccharopolyspora erythraea NRRL 2338] Length=300 Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 136/300 (46%), Positives = 201/300 (67%), Gaps = 6/300 (2%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +LFRQLEY VA+++E+HFARAA+ C+VSQP LS+A+ KLE EL V LI R F+GLT+E Sbjct 1 MLFRQLEYLVALSREQHFARAAQACHVSQPTLSAAVRKLEDELGVALIRRERRFQGLTQE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+V WA+RILA+ + + EV A+R+G+ G L LG +PTA+ L+ SAFC+ HPLA+ Sbjct 61 GERIVRWAERILADRESMRQEVGALRTGLNGRLTLGVIPTAAPAVPLLTSAFCAKHPLAQ 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V V + ++ E+ RRLR FE+D + + + + VPLY E+YV L+P+D Sbjct 121 VHVLADVSTDEISRRLRTFEIDVALTYDHGAEVSGLTSVPLYRERYVFLTPSDGEFGRRE 180 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 ++ W +AA++PL LLT M+ R+ +DA F V+ PQ+ETDS++SL + VATG W+++ Sbjct 181 SVTWAEAARVPLCLLTPSMQGRRRLDALFGKAGVAPSPQLETDSISSLCSHVATGLWSTV 240 Query 241 VPHTWLWAM-PMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALAL 299 VP + A+ M+G +RAV L + A++AL ++ PGS V RA + A+++ L Sbjct 241 VPAPFARALDDMAG-----VRAVALEETDDAARVALVLSSREPGSVVGRAFVDVARSIDL 295 >gi|284030099|ref|YP_003380030.1| LysR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809392|gb|ADB31231.1| transcriptional regulator, LysR family [Kribbella flavida DSM 17836] Length=317 Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 136/319 (43%), Positives = 202/319 (64%), Gaps = 21/319 (6%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +L RQLEY V++A+ERHFARAA+ CYVSQP+LS+AI KLE+EL+V ++ RG FEGLT E Sbjct 1 MLLRQLEYLVSLARERHFARAADACYVSQPSLSAAIRKLEQELDVPIVRRGRRFEGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+++WA+RILAE A + E+ +R G+TGTLRLG +PTA SL+ + FC+ H A+ Sbjct 61 GERVLLWAQRILAERDALRHELSVMRGGLTGTLRLGAIPTAMPVVSLLTTPFCARHSQAR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V + S L++ ++ ++L EFELD + + + +V PLYEE+Y+LL+ PGTS Sbjct 121 VTLES-LSSRDITQKLAEFELDVAMTYLDDDTLGNVRKTPLYEERYLLLT------PGTS 173 Query 181 TL------VWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVAT 234 L W A+LPL LL+ MR+R++++ F D V+A P +E+D+V+ L++ + Sbjct 174 PLAEQPVATWAQVAELPLCLLSPQMRNRRIMNGYFTDDGVTAEPAIESDTVSGLYSHLHG 233 Query 235 GNWASIVPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCA 294 +W++++ H WL M G G +R V L P ++ L A P +ARAL+ A Sbjct 234 NHWSTVISHAWLH---MFGVPAG-MRVVPLKSPAHGPRVGLVIAARSPEPVLARALLDVA 289 Query 295 QA----LALNEFFDTQLRG 309 + AL++ D L G Sbjct 290 RQAGVHTALDDLLDVHLMG 308 >gi|345013294|ref|YP_004815648.1| LysR family transcriptional regulator [Streptomyces violaceusniger Tu 4113] gi|344039643|gb|AEM85368.1| transcriptional regulator, LysR family [Streptomyces violaceusniger Tu 4113] Length=311 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/314 (45%), Positives = 192/314 (62%), Gaps = 9/314 (2%) Query 3 FRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREGE 62 RQLEY VA+A+ERHF RAA CYVSQP+LS+AI +LE EL V ++ RG +EGLT EGE Sbjct 3 LRQLEYLVALARERHFVRAAAACYVSQPSLSAAIRRLEHELGVPIVRRGRRYEGLTPEGE 62 Query 63 RLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKVQ 122 ++ WA RILAE + E+ A+ G+TGTLRLG +PTA ASL+ S FC +HP A+ Sbjct 63 VVLAWAHRILAERDGLRQELSALGDGLTGTLRLGVIPTAMPAASLLTSPFCESHPRARAS 122 Query 123 VCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTSTL 182 + S L++ ++ L EFELDA + + + + +PLYEE+YVLL+P D L +T Sbjct 123 IES-LSSVDITHGLAEFELDAAMTYLDDDSLGGLRRLPLYEERYVLLTPVDGLLATAATA 181 Query 183 VWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIVP 242 W AA LPL LL MR+R+++D FA + P +E+DSVA L+A + G W+S++ Sbjct 182 RWAQAADLPLCLLGPRMRNRRIMDECFAADGATVTPAIESDSVAGLYAHLPGGRWSSVIS 241 Query 243 HTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQAL----A 298 H WL + P G +R V L PV ++ L T P S +A AL+T A+ A Sbjct 242 HAWLHLFGV--PEG--MRVVPLEGPVHGPRVGLVTGPDDPPSVLAGALLTVAREADVRQA 297 Query 299 LNEFFDTQLRGITR 312 L+E T L G R Sbjct 298 LDERLHTYLNGHER 311 >gi|296394290|ref|YP_003659174.1| LysR family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181437|gb|ADG98343.1| transcriptional regulator, LysR family [Segniliparus rotundus DSM 44985] Length=316 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 135/300 (45%), Positives = 195/300 (65%), Gaps = 5/300 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 V RQLEYFVA+A ERHF +A+E C+VSQPA S A+ KLEREL V L+ RGH+FEGLT E Sbjct 22 VQIRQLEYFVALAAERHFTKASEVCHVSQPAFSEALGKLERELRVPLVRRGHAFEGLTPE 81 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GERL+VWA+R+LA+H A +AE DA+R G++G R+G VP A+ A+ +++ FC+ HPLA Sbjct 82 GERLLVWARRLLADHEAMRAEADALRVGVSGRARIGAVPGAAAVAAKLIAPFCARHPLAT 141 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 VQ+ + L+ +E+ R++R+FELDA I + + ++ + + LYEE+Y+LL+ +L Sbjct 142 VQLATHLSFSEILRQVRDFELDAGITFLD-EGTEGLPSLLLYEERYMLLASKRLLAERDG 200 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W A+ LP+A L A MR R ++D A A V QV+TDS+ SL A TG WA++ Sbjct 201 PVPWTQASALPMAALAAGMRGRALVDDACAQAGVQVDVQVQTDSIESLCALAGTGRWATV 260 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 P +W+ A S G+I AV +++P + ++ L A P + AL A+ L L Sbjct 261 APSSWVQAWEFS----GDIAAVPIIEPEVVTRMGLVFTASTPTPALTTALFDVARRLKLG 316 >gi|333918602|ref|YP_004492183.1| LysR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333480823|gb|AEF39383.1| Transcriptional regulator, LysR family [Amycolicicoccus subflavus DQS3-9A1] Length=320 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/311 (39%), Positives = 187/311 (61%), Gaps = 9/311 (2%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +L RQLEY A+A+ HF AAE C+V+QPALS+ I KLE EL V ++ RG FEG TRE Sbjct 1 MLLRQLEYLTALARVSHFGHAAEACHVTQPALSAGIRKLEAELGVQIVQRGQRFEGFTRE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GE ++ WA+R+LAE A + +R+G++G LR+G +PTA + ASL+ + H Sbjct 61 GEEVLRWAQRMLAEREALGQSISGMRAGLSGVLRIGAIPTALSVASLLTAPMREQHNNVH 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 + + +++ E+ RL +F++D + + + + V +VPLY E+Y+ L+P D G Sbjct 121 FSLQA-MSSREIVSRLNDFDIDVGMSYIDGEPLGKVRIVPLYRERYLFLTPQDGEFAGRD 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 ++ W +AA L LL M++R+++D FA+ A P VETD+V++++A VA+ +S+ Sbjct 180 SISWAEAASAQLCLLMPVMQNRRILDGFFAEAGAEASPVVETDTVSAIYAHVASMRLSSV 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQAL--- 297 +PH WL + P G RA+ L P ++ L + GP S +ARAL+ AQ + Sbjct 240 IPHAWLHGFGV--PEG--TRAIPLPQPKRSFRVGLVLSGGGPESLLARALVATAQQVDMP 295 Query 298 -ALNEFFDTQL 307 AL++ + QL Sbjct 296 SALDQAVERQL 306 >gi|146278888|ref|YP_001169047.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145557129|gb|ABP71742.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17025] Length=294 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/300 (41%), Positives = 179/300 (60%), Gaps = 11/300 (3%) Query 2 LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREG 61 + +LE F+A+A+ERHF RAAE C V+QP LSSAI +LE +L V L+ RG F+GLT EG Sbjct 1 MIDKLEMFIALARERHFGRAAEACRVTQPTLSSAIRQLEDQLGVQLVFRGSRFQGLTPEG 60 Query 62 ERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKV 121 R++ WA+RI+ + A + E+ AVRSG++G LR+G +PTA + + + F HP V Sbjct 61 ARVLDWARRIVGDVRALRDEMRAVRSGLSGNLRIGVIPTAVPMVADLTAPFLERHPGVHV 120 Query 122 QVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADM-LPPGTS 180 ++ SR ++E+ + E DA I + + + V +PLY E Y L+ D LPPG S Sbjct 121 RILSR-TSSEILSGIESLEFDAGITYLDNEPLGRVTQIPLYAESYRLVCTPDFPLPPGDS 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W D A+LPL LLTADM++R++++ A A P VE++S +L + V TG WASI Sbjct 180 -IGWDDVARLPLCLLTADMQNRRIVNQHLAGPGAPATPSVESNSPLALISHVMTGRWASI 238 Query 241 VPHTW--LWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALA 298 +P L+A G +RA + P ++ Q+ L P +P+ ALI A+ LA Sbjct 239 LPKQLADLFA------ADGRLRATPIAQPEVEHQVGLIAPHREPHTPILAALIDAARRLA 292 >gi|336117619|ref|YP_004572387.1| putative LysR family transcriptional regulator [Microlunatus phosphovorus NM-1] gi|334685399|dbj|BAK34984.1| putative LysR family transcriptional regulator [Microlunatus phosphovorus NM-1] Length=310 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/308 (38%), Positives = 182/308 (60%), Gaps = 5/308 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +L RQLEY A+A+ERHF RAA C+ +QPALS+ I +LE EL V ++ RG FEG T E Sbjct 1 MLLRQLEYLTALARERHFGRAAAACHATQPALSAGIRRLESELRVQIVQRGQRFEGFTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 G ++ WA+ I+AE A + +R ++GTLRLG +PTA + +SL+ + HP K Sbjct 61 GLEVLRWAQGIVAEREALDQTLAEMRGQLSGTLRLGAIPTALSVSSLLTAPLRERHPHVK 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 + S +A+ E+ RL +F+LD + + + + V +VPLY E+Y+ L+P D G + Sbjct 121 YSLQS-MASREIVDRLNDFDLDVGMTYVDGEPLGHVRVVPLYRERYLFLTPVDGELSGRN 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 +L W +AA L LLT M++R+++D FA+ A P VE D++++++A ++ N +S+ Sbjct 180 SLTWSEAATSRLCLLTPIMQNRRILDGYFAEAGAKASPIVECDTISAVYAHLSAMNLSSV 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 +PHTWL + + ++R + L P + L A P S + RAL+ L L+ Sbjct 240 IPHTWLHSFGVP----PDLRVLPLPRPRRAFHVGLVLAARDPQSMLIRALVDLVTDLDLH 295 Query 301 EFFDTQLR 308 F+ LR Sbjct 296 RQFEDVLR 303 >gi|77464658|ref|YP_354162.1| LysR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389076|gb|ABA80261.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides 2.4.1] Length=296 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 119/298 (40%), Positives = 175/298 (59%), Gaps = 9/298 (3%) Query 2 LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREG 61 + +LE F+A+A+ERHF RAAE C V+QP LSSAI +LE +L V L+ RG F+GLT EG Sbjct 1 MIDKLEMFIALARERHFGRAAEACGVAQPTLSSAIRQLEDQLGVQLVFRGSRFQGLTPEG 60 Query 62 ERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKV 121 R++ WA+RI+ + A + E+ + RSG++G L LG +PTA + + + F HP V Sbjct 61 ARVLDWARRIVGDARALRDEMRSARSGLSGNLTLGVIPTAVPMVADLTAPFLERHPAVHV 120 Query 122 QVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTST 181 ++ SR +TE+ + E DA I + + + V VPLY E Y L+ P T + Sbjct 121 RILSR-TSTEILSGIESLEFDAGITYLDNEPLGRVTQVPLYAESYRLVCGPAFPLPETGS 179 Query 182 LVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIV 241 L W + A+LPL LLTADM++R++++ A A P VE++S +LFA V TG WAS++ Sbjct 180 LGWDEVARLPLCLLTADMQNRRIVNQHLAGTGAPASPSVESNSTLTLFAHVMTGRWASVL 239 Query 242 PHTW--LWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQAL 297 P L+A G +RA+ +V P + Q+ L P +P+ ALI A+ L Sbjct 240 PKKLADLFA------GTGRLRAIPIVGPEVSHQVGLIAAYREPHTPILTALIEAARRL 291 >gi|221640572|ref|YP_002526834.1| transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332559552|ref|ZP_08413874.1| Transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|221161353|gb|ACM02333.1| Transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332277264|gb|EGJ22579.1| Transcriptional regulator [Rhodobacter sphaeroides WS8N] Length=296 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 119/298 (40%), Positives = 175/298 (59%), Gaps = 9/298 (3%) Query 2 LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREG 61 + +LE F+A+A+ERHF RAAE C V+QP LSSAI +LE +L V L+ RG F+GLT EG Sbjct 1 MIDKLEMFIALARERHFGRAAEACGVAQPTLSSAIRQLEDQLGVQLVFRGSRFQGLTPEG 60 Query 62 ERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKV 121 R++ WA+RI+ + A + E+ + RSG++G L LG +PTA + + + F HP V Sbjct 61 ARVLDWARRIVGDARALRDEMRSARSGLSGNLTLGVIPTAVPMVADLTAPFLERHPAVHV 120 Query 122 QVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTST 181 ++ SR +TE+ + E DA I + + + V VPLY E Y L+ P T + Sbjct 121 RILSR-TSTEILSGIESLEFDAGITYLDNEPLGRVTQVPLYAESYRLVCAPAFPLPETGS 179 Query 182 LVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIV 241 L W + A+LPL LLTADM++R++++ A A P VE++S +LFA V TG WAS++ Sbjct 180 LGWDEVARLPLCLLTADMQNRRIVNQHLAGTGAPASPSVESNSTLTLFAHVMTGRWASVL 239 Query 242 PHTW--LWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQAL 297 P L+A G +RA+ +V P + Q+ L P +P+ ALI A+ L Sbjct 240 PKKLADLFA------GTGRLRAIPIVGPEVSHQVGLIAAYREPHTPILTALIEAARRL 291 >gi|324999408|ref|ZP_08120520.1| transcriptional regulator, LysR family protein [Pseudonocardia sp. P1] Length=308 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/291 (43%), Positives = 179/291 (62%), Gaps = 9/291 (3%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 V RQLEY VA+A+E+HF RAA C+ SQ LS+A+ LER+L VT++ RGH F+G T E Sbjct 5 VQLRQLEYLVALAREQHFGRAAAACHASQSTLSAALQTLERQLGVTIVQRGHRFQGFTAE 64 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTA-STTASLVLSAFCSAHPLA 119 G R+V WA RILAE A + ++D +R G++ +R+G +PTA TA+L L A+ AHP A Sbjct 65 GARVVGWAHRILAERDALRTDLDRMRGGLSAVVRIGAIPTAVPATAALTL-AWTRAHPRA 123 Query 120 KVQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGT 179 ++ L + E+ RRL EFELDA + + + D D V +PLY E+Y+LL+ A +P Sbjct 124 GTRI-EVLPSREIDRRLAEFELDAGLTYLDPDDGDTV--LPLYRERYLLLTGAAGVPADR 180 Query 180 STLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWAS 239 + + W D A + L LT M++R+++D A VETD+VA+L+A +ATG W++ Sbjct 181 TEVGWADVAGVELCALTRGMQNRRILDDAVRRAGGEPRIVVETDTVAALYAHLATGRWSA 240 Query 240 IVPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARAL 290 ++ HTWL A + P G +RA+ +V + L GP S VA A Sbjct 241 VIAHTWLRAFGV--PPG--MRALPVVGEGPLPTVGLRLGDQGPASYVAGAF 287 >gi|152982152|ref|YP_001355350.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282229|gb|ABR90639.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length=312 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 122/309 (40%), Positives = 177/309 (58%), Gaps = 6/309 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 + RQL+Y V +A+E+HFARAAE C VSQPALS+A+ LE EL + ++ RG F+G T E Sbjct 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGIAIVQRGQRFQGFTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER++ WA++ LA K E R +TGTLRLG +PT SL L+ C A Sbjct 61 GERILDWARQTLAALEGLKQEASMSRVKLTGTLRLGAIPTTMPIVSL-LTGQCRAQHADL 119 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 Q+ L+ E+ RRL +FELD + + E Q + + PLY E+Y+LL+ + G + Sbjct 120 RQLVLSLSTEEIMRRLDDFELDVGLTYLEDQRLNGFHVQPLYRERYMLLAREGAMLDGKA 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W +AA+ PL LLT+ M++R+++DAAF V VETDSV +L++ V N S+ Sbjct 180 EISWEEAAEFPLCLLTSHMQNRRIVDAAFRRAEVHPNVVVETDSVFALYSHVRHANLYSV 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPH+ L + E+ A+ +V P L I L + P SP+ A + A+ + L Sbjct 240 VPHSLLCLFELR----DEMVAIPIV-PELSRSIGLISLDHDPCSPIVVAARSIAEKINLQ 294 Query 301 EFFDTQLRG 309 FD + G Sbjct 295 AQFDAYISG 303 >gi|338739541|ref|YP_004676503.1| putative LysR family transcriptional regulator [Hyphomicrobium sp. MC1] gi|337760104|emb|CCB65935.1| Putative transcriptional regulator, LysR family [Hyphomicrobium sp. MC1] Length=306 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/303 (38%), Positives = 174/303 (58%), Gaps = 5/303 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 + RQ+ Y VA+A+E+HF RAAEKC+V+Q LS+ + LEREL++ L+ RG F GLT E Sbjct 1 MFVRQMSYLVALAREKHFTRAAEKCHVTQSTLSAGLKALERELDMRLVLRGPRFIGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+V WA +I++++ K +V +R G+ GTLRLG +P A + + S FC+ HP Sbjct 61 GERVVAWASQIISDYENLKQDVAGLREGLKGTLRLGVIPAAMPAVAKLTSPFCAQHPGIT 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V V S + + E+ + +FELDA + + E + +V PLY E+Y L++ D T Sbjct 121 VDVFS-MTSAEIQAGIDKFELDAGLTYLENEPLANVRKTPLYRERYFLVTHVDSPLAQTD 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W++A L LL M++R+V++ + P V ++S ++ + V +G W+SI Sbjct 180 AISWKEAVTENLCLLNESMQNRRVLNKLAESLGLKLAPSVTSNSYLAICSHVCSGEWSSI 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 +PHT+ + E+ VELVDP I L + P SP+A ALI CA L Sbjct 240 IPHTFSYIFCGC----KELALVELVDPKHSQSIGLVASNRDPLSPLAHALIRCASRLNQE 295 Query 301 EFF 303 + F Sbjct 296 DLF 298 >gi|126463498|ref|YP_001044612.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126105162|gb|ABN77840.1| transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] Length=296 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/298 (40%), Positives = 174/298 (59%), Gaps = 9/298 (3%) Query 2 LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREG 61 + +LE F+A+A+ERHF RAAE C V+QP LSSAI +LE +L V L+ RG F+GLT EG Sbjct 1 MIDKLEMFIALARERHFGRAAEACGVAQPTLSSAIRQLEDQLGVQLVFRGSRFQGLTPEG 60 Query 62 ERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKV 121 R++ WA+RI+ + A + E+ + RSG++G L LG +PTA + + + F HP V Sbjct 61 ARVLDWARRIVGDARALRDEMRSARSGLSGNLTLGVIPTAVPMVADLTAPFLERHPAVHV 120 Query 122 QVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTST 181 ++ SR +TE+ + E DA I + + + V VPLY E Y L+ P + Sbjct 121 RILSR-TSTEILSGIESLEFDAGITYLDNEPLGRVTQVPLYAESYRLVCAPTFPLPEAGS 179 Query 182 LVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIV 241 L W + A+LPL LLTADM++R++++ A A P VE++S +LFA V TG WAS++ Sbjct 180 LGWDEVARLPLCLLTADMQNRRIVNQHLAGTGAPASPSVESNSTLTLFAHVMTGRWASVL 239 Query 242 PHTW--LWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQAL 297 P L+A G +RA+ +V P + Q+ L P +P+ ALI A+ L Sbjct 240 PKKLADLFA------GTGRLRAIPIVGPEVSHQVGLIAAYREPHTPILTALIEAARRL 291 >gi|158421640|ref|YP_001522932.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328529|dbj|BAF86014.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length=300 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 119/302 (40%), Positives = 176/302 (59%), Gaps = 10/302 (3%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 + RQL Y VAVA+E+HF RAAE C+V+QP LS+ + KLE EL L+ RGH F GLT Sbjct 1 MFVRQLHYLVAVAREQHFGRAAEACHVTQPTLSAGLRKLEEELGYPLVVRGHRFMGLTEH 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 G R++ WA+RI+ ++ + E+ +G+TG LRLG VP S +L+AFC HPL + Sbjct 61 GARVLAWAQRIINDYDGMRQELAGSEAGLTGILRLGCVPPMLPALSGLLTAFCERHPLVR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPA--DMLPPG 178 VQ S ++A + R L + LDA + + + +P YEE+Y+ + A D LP Sbjct 121 VQALS-MSALAIQRGLDDQVLDAGVSYLTGTQPPKLHWLPFYEERYMFVRAAGGDDLP-- 177 Query 179 TSTLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWA 238 + + W +AA+ PL LLT DM++RQ+ID A A ++P++E ++ +++ V +G WA Sbjct 178 -ARISWAEAARSPLCLLTPDMQNRQIIDEALATAGAVSVPRIEANTFFGVWSMVCSGAWA 236 Query 239 SIVPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALA 298 SIVPHT + G G + A+ L+DP + + L T P +PVA A A + Sbjct 237 SIVPHT---HIATFGRMAG-VCAIPLIDPDWRRPVGLVTPDRDPLAPVAAAFRKLAARWS 292 Query 299 LN 300 N Sbjct 293 WN 294 >gi|134096588|ref|YP_001101663.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133740491|emb|CAL63542.1| Putative transcriptional regulator, LysR family [Herminiimonas arsenicoxydans] Length=312 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/310 (42%), Positives = 178/310 (58%), Gaps = 8/310 (2%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 + RQL+Y V +A+E+HFARAAE C VSQPALS+A+ LE EL V ++ RG F+G T E Sbjct 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGVAIVQRGQRFQGFTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER++ WA++ LA + E R ++GTLRLG +PT SL+ + H + Sbjct 61 GERILDWARQTLAALEGMRQEASMSRVKLSGTLRLGAIPTTMPIVSLLTGPCRAQHADLR 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 +V S L+ E+ RRL +FELD + + E Q + PLY E+Y+LL+ D L G Sbjct 121 QRVLS-LSTEEIMRRLDDFELDIGLTYLEDQRLSGFHVQPLYRERYMLLA-RDQLAMGDR 178 Query 181 T-LVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWAS 239 T + W DAA+LPL LLTA M++R+++DAAF V VETDSV +L++QV S Sbjct 179 TEISWEDAAELPLCLLTAHMQNRRIVDAAFRRADVQPNVAVETDSVFALYSQVRHAGLFS 238 Query 240 IVPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALAL 299 +VPH+ L + E+ A+ LV P L I + + A P SPV A A + L Sbjct 239 VVPHSLLCLF----ESRDEMAAIPLV-PELSRAIGMISLAHDPCSPVVTAARNIAAQIDL 293 Query 300 NEFFDTQLRG 309 FD + G Sbjct 294 QARFDAYISG 303 >gi|288961315|ref|YP_003451654.1| transcriptional regulator [Azospirillum sp. B510] gi|288913623|dbj|BAI75110.1| transcriptional regulator [Azospirillum sp. B510] Length=299 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 117/294 (40%), Positives = 176/294 (60%), Gaps = 5/294 (1%) Query 5 QLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREGERL 64 +LE+ +A+A E+HF RAA+ C VSQP LS+AI +LE L V L++RG F G T EGER+ Sbjct 4 KLEFLIALATEKHFGRAAQVCGVSQPNLSAAIKQLETTLGVPLVDRGARFIGFTPEGERV 63 Query 65 VVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKVQVC 124 + WA+RI+ ++ A +A+V+ ++ G+TGTLRL VPTA + + S HP K+ + Sbjct 64 LDWARRIVGDYKAMRADVETMKQGLTGTLRLVVVPTALPMVQRLTATVWSMHPGIKITIA 123 Query 125 SRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTSTLVW 184 S ++TE+ RL E +A I + + + +VD VPLY E+Y L++ D ++ W Sbjct 124 SH-SSTEILSRLENLEAEAGITYLDNEPLGNVDEVPLYHERYHLITAVDGPLGRRDSVTW 182 Query 185 RDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIVPHT 244 +AA +PL LL ++M++R++ID AFA+ V A P +E++S+ L + TG W++I+P Sbjct 183 EEAATVPLCLLNSNMQNRRIIDRAFAEAGVQAEPMLESNSIVVLTNHLRTGMWSTIMPKI 242 Query 245 WLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALA 298 M S IRAV +V P L I L P P+ ALI A+ LA Sbjct 243 ----MADSLLLPQTIRAVPIVAPELSTLIGLVVARRDPQPPLTAALIADARRLA 292 >gi|300022139|ref|YP_003754750.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299523960|gb|ADJ22429.1| transcriptional regulator, LysR family [Hyphomicrobium denitrificans ATCC 51888] Length=302 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 110/301 (37%), Positives = 177/301 (59%), Gaps = 5/301 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 + RQL Y V +A+E+HFARAAEKC V+Q LS+ + LEREL++ L+ R F GLT E Sbjct 1 MFVRQLTYLVTLAREKHFARAAEKCNVTQSTLSAGLKALERELDMRLVIREPRFMGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GER+V WA +I+ ++ + K +V+ +R G+ GTLRLG +P A + + +AF + HP Sbjct 61 GERVVEWAAQIIVDYESLKQDVEGLRDGLKGTLRLGVIPAAIPALARLTAAFSAKHPHVS 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V V S + + E+ L +FELDA + + + + +V PLYEE+YV ++ A Sbjct 121 VDVNS-MTSVEIQSGLDKFELDAGLTYLDNEPLVNVRKCPLYEEKYVFVTSAHGPFAKLP 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 ++ W+DA+ L LL M++R+V++ + P V T+S ++ + V +G W+SI Sbjct 180 SITWQDASNENLCLLNESMQNRRVLNNIARSAGLKLAPTVTTNSFLAVCSYVCSGVWSSI 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 VPHT+ + ++ +++L+DP+ I L T+ P P+A AL+ CA+ L Sbjct 240 VPHTFSYLF----SECKDLVSIDLIDPIHSQNIGLVTSDRDPMPPLAHALLQCAKRLDFE 295 Query 301 E 301 + Sbjct 296 D 296 >gi|13474501|ref|NP_106070.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025255|dbj|BAB51856.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length=299 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 108/297 (37%), Positives = 174/297 (59%), Gaps = 5/297 (1%) Query 2 LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREG 61 + +LE+F+A+A+E HF RAAE C V+QP LS+ I +LE +L V L+NRG F+GLT EG Sbjct 1 MIDKLEFFIALAKEEHFGRAAEACGVTQPTLSAGIKQLEGQLGVMLVNRGSRFQGLTPEG 60 Query 62 ERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKV 121 ++++VWA+RI+ + + + E+ A R G++G +R+ +PTA + + + F HP Sbjct 61 KQVLVWARRIVGDSRSMREEMRAARHGLSGRIRIAAIPTALAMVARLTTPFREKHPGVTF 120 Query 122 QVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTST 181 V SR + E+ L F++DA I + + + V VPLY+E+Y L++ Sbjct 121 SVLSR-TSIEVLSLLGNFDIDAGITYLDNEPLGRVTSVPLYDERYQLITAVGNPYSDRDK 179 Query 182 LVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIV 241 + W + ++LPL LLT DM++R++ID A+ V P +E++S+ LF+ + TG W+SI+ Sbjct 180 VTWAEISRLPLCLLTPDMQNRRIIDQHLAEAGVQVRPTLESNSMIVLFSHIRTGKWSSIM 239 Query 242 PHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALA 298 P S P IRA+ +V+P + L P +P+ +AL+ A ALA Sbjct 240 PLNLAETFGFSEP----IRAIPIVEPDASHTVGLVAAPREPHTPLVQALLDEAMALA 292 >gi|345136980|dbj|BAK66589.1| LysR family transcriptional regulator [Sphingobium sp. SYK-6] Length=301 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 110/286 (39%), Positives = 169/286 (60%), Gaps = 5/286 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 +L R L YFV +A+ERHFARAAE C+++QP LS+AI KLE +L L+ R H F GLT E Sbjct 1 MLVRHLSYFVTLARERHFARAAEVCHIAQPTLSAAIRKLEEDLGTPLVERSHRFVGLTPE 60 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 GE+L+VW ++IL ++ + + ++ R G+ G LRLG +P A S V FC+A+P A Sbjct 61 GEKLLVWGRQILTDYHSLRDDLAGSRQGLVGELRLGVIPAALPCVSFVTERFCAANPAAT 120 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 + + S + + + L FELD I + E + V VPLY E+Y + + G Sbjct 121 IDIRS-ITSRAIAEGLDAFELDGGITYLENEPIAHVQRVPLYRERYKFVVDREHPFAGRK 179 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 T+ W++AA L LL+ DM++R++ID ++ P V ++S ++ A + GNWASI Sbjct 180 TISWQEAAGERLCLLSQDMQNRRIIDRLTTSIGLAVHPVVASNSFLAVCAHLRHGNWASI 239 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPV 286 +PH++ + S P ++ A++LVDPV + L + P SP+ Sbjct 240 MPHSFFHVLG-SQP---DLAAIDLVDPVHDEAVGLVISGREPRSPM 281 >gi|145223182|ref|YP_001133860.1| LysR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315443640|ref|YP_004076519.1| LysR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145215668|gb|ABP45072.1| transcriptional regulator, LysR family [Mycobacterium gilvum PYR-GCK] gi|315261943|gb|ADT98684.1| transcriptional regulator, LysR family [Mycobacterium sp. Spyr1] Length=311 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/304 (39%), Positives = 173/304 (57%), Gaps = 5/304 (1%) Query 1 VLFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTRE 60 VL + L+Y +A+A ERHF RAA +C+VSQP LS AI +LER+L + ++ RGH FEG T E Sbjct 5 VLLQHLDYLLALAAERHFGRAAARCHVSQPTLSVAIRRLERDLGIVIVQRGHRFEGFTVE 64 Query 61 GERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAK 120 G+R+V WA+RI+AE A++D ++ +T + RLG +PTA + F +P A Sbjct 65 GQRVVTWAQRIVAERDEMLADLDRMQGRLTASARLGAIPTAVPVCPFITDEFLRRNPAAA 124 Query 121 VQVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTS 180 V++ + L++ E+ RRL +FE+D + + + + V LY EQYVL++PAD G Sbjct 125 VRIEA-LSSREIARRLADFEIDVGLTYLDDEAPPGTRAVELYREQYVLVAPADNPLMGLD 183 Query 181 TLVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASI 240 + W DAA L L +LT MR+R+++DA A + P VE DSV +L+A + + A+I Sbjct 184 EVAWSDAAGLQLCVLTTSMRNRRILDANMAAEGIRYRPVVEADSVDALYAHLTGSHRATI 243 Query 241 VPHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALALN 300 WL + + P G R + P + I L P S VA AL+ A L L Sbjct 244 ASTAWLPKLGL--PQGFGARPMVRHGP--RPPIGLVVLDRAPASIVAAALVEVAGELDLG 299 Query 301 EFFD 304 D Sbjct 300 VRID 303 >gi|163760122|ref|ZP_02167205.1| probable transcriptional regulator protein, LysR family [Hoeflea phototrophica DFL-43] gi|162282521|gb|EDQ32809.1| probable transcriptional regulator protein, LysR family [Hoeflea phototrophica DFL-43] Length=308 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 106/297 (36%), Positives = 173/297 (59%), Gaps = 5/297 (1%) Query 2 LFRQLEYFVAVAQERHFARAAEKCYVSQPALSSAIAKLERELNVTLINRGHSFEGLTREG 61 + +LE+F+ +A+ERHF AAE C V+QP LS+AI +LE +L V L+ RG F+GLT EG Sbjct 12 MIDKLEFFIVLARERHFGHAAEICGVTQPTLSAAIKQLEEQLGVILVQRGSRFQGLTPEG 71 Query 62 ERLVVWAKRILAEHAAFKAEVDAVRSGITGTLRLGTVPTASTTASLVLSAFCSAHPLAKV 121 +R++ WA+RI+ + + E+ A R G++G RL +PTAS+ + + AF HP + Sbjct 72 QRVLEWARRIVGDAKTMREEMKAARKGLSGHARLAIIPTASSMVTALTMAFAEKHPAVTL 131 Query 122 QVCSRLAATELYRRLREFELDAVIVHPETQDSDDVDLVPLYEEQYVLLSPADMLPPGTST 181 V S + ++ +L FE+DA I + + + + V VPLY E+Y L++ A Sbjct 132 SVTS-CNSLQVLSKLENFEIDAGITYIDNEPTGRVATVPLYAERYQLITSAGQGLAEREQ 190 Query 182 LVWRDAAQLPLALLTADMRDRQVIDAAFADHAVSAIPQVETDSVASLFAQVATGNWASIV 241 + W + A+LPL LLT DM++R++I+ A+ S P +E++S+ LF+ + TG WASI+ Sbjct 191 VTWAEVAELPLCLLTPDMQNRRIINQHLAEVGASVKPTLESNSMIVLFSHIRTGKWASIM 250 Query 242 PHTWLWAMPMSGPTGGEIRAVELVDPVLKAQIALATNALGPGSPVARALITCAQALA 298 P + + G+ RA+ +V+P + + + P P+ AL+ A+ A Sbjct 251 PVNLAETLGVE----GDFRAIPIVEPDARHIVGMIAAPREPHPPIVSALLHEARIFA 303 Lambda K H 0.321 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 543016982550 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40