BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0122

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607264|ref|NP_214636.1|  hypothetical protein Rv0122 [Mycoba...   248    1e-64
gi|167966876|ref|ZP_02549153.1|  hypothetical protein MtubH3_0195...   184    5e-45
gi|308378551|ref|ZP_07482970.2|  hypothetical protein TMIG_00407 ...   151    3e-35
gi|254549057|ref|ZP_05139504.1|  hypothetical protein Mtube_01096...   125    2e-27
gi|227548715|ref|ZP_03978764.1|  conserved hypothetical protein [...  37.7    0.51 
gi|340793304|ref|YP_004758767.1|  hypothetical protein CVAR_0346 ...  37.4    0.77 
gi|334338334|ref|YP_004543486.1|  hypothetical protein Isova_2907...  36.6    1.3  
gi|288923011|ref|ZP_06417166.1|  hypothetical protein FrEUN1fDRAF...  35.8    1.9  
gi|86740585|ref|YP_480985.1|  hypothetical protein Francci3_1880 ...  35.4    2.8  
gi|320531226|ref|ZP_08032210.1|  putative toxin-antitoxin system,...  35.4    3.0  
gi|146281698|ref|YP_001171851.1|  nitrogen fixation negative regu...  34.7    4.8  
gi|326476979|gb|EGE00989.1|  vacuolar protein sorting protein [Tr...  34.3    6.3  
gi|326472159|gb|EGD96168.1|  vacuolar protein sorting protein [Tr...  34.3    6.5  


>gi|15607264|ref|NP_214636.1| hypothetical protein Rv0122 [Mycobacterium tuberculosis H37Rv]
 gi|31791301|ref|NP_853794.1| hypothetical protein Mb0127 [Mycobacterium bovis AF2122/97]
 gi|121636035|ref|YP_976258.1| hypothetical protein BCG_0156 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 49 more sequence titles
 
gi|148659886|ref|YP_001281409.1| hypothetical protein MRA_0129 [Mycobacterium tuberculosis H37Ra]
 gi|148821314|ref|YP_001286068.1| hypothetical protein TBFG_10123 [Mycobacterium tuberculosis F11]
 gi|224988508|ref|YP_002643195.1| hypothetical protein JTY_0126 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797040|ref|YP_003030041.1| hypothetical protein TBMG_00123 [Mycobacterium tuberculosis KZN 
1435]
 gi|254233514|ref|ZP_04926840.1| hypothetical protein TBCG_00122 [Mycobacterium tuberculosis C]
 gi|254366575|ref|ZP_04982619.1| hypothetical protein TBHG_00122 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289441491|ref|ZP_06431235.1| hypothetical protein TBLG_02234 [Mycobacterium tuberculosis T46]
 gi|289445652|ref|ZP_06435396.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289552373|ref|ZP_06441583.1| hypothetical protein TBXG_00123 [Mycobacterium tuberculosis KZN 
605]
 gi|289568016|ref|ZP_06448243.1| hypothetical protein TBJG_03148 [Mycobacterium tuberculosis T17]
 gi|289572702|ref|ZP_06452929.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747889|ref|ZP_06507267.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748595|ref|ZP_06507973.1| hypothetical protein TBDG_00483 [Mycobacterium tuberculosis T92]
 gi|289756184|ref|ZP_06515562.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis EAS054]
 gi|289760223|ref|ZP_06519601.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764239|ref|ZP_06523617.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294992966|ref|ZP_06798657.1| hypothetical protein Mtub2_00285 [Mycobacterium tuberculosis 
210]
 gi|297632596|ref|ZP_06950376.1| hypothetical protein MtubK4_00640 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297729570|ref|ZP_06958688.1| hypothetical protein MtubKR_00665 [Mycobacterium tuberculosis 
KZN R506]
 gi|306782739|ref|ZP_07421061.1| hypothetical protein TMCG_02331 [Mycobacterium tuberculosis SUMu003]
 gi|313656897|ref|ZP_07813777.1| hypothetical protein MtubKV_00655 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630205|ref|YP_004721847.1| hypothetical protein MAF_01230 [Mycobacterium africanum GM041182]
 gi|340625157|ref|YP_004743609.1| hypothetical protein MCAN_01251 [Mycobacterium canettii CIPT 
140010059]
 gi|2181964|emb|CAB09450.1| HYPOTHETICAL PROTEIN Rv0122 [Mycobacterium tuberculosis H37Rv]
 gi|31616886|emb|CAD92988.1| HYPOTHETICAL PROTEIN Mb0127 [Mycobacterium bovis AF2122/97]
 gi|121491682|emb|CAL70140.1| Hypothetical protein BCG_0156 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124603307|gb|EAY61582.1| hypothetical protein TBCG_00122 [Mycobacterium tuberculosis C]
 gi|134152087|gb|EBA44132.1| hypothetical protein TBHG_00122 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504038|gb|ABQ71847.1| hypothetical protein MRA_0129 [Mycobacterium tuberculosis H37Ra]
 gi|148719841|gb|ABR04466.1| hypothetical protein TBFG_10123 [Mycobacterium tuberculosis F11]
 gi|224771621|dbj|BAH24427.1| hypothetical protein JTY_0126 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253318543|gb|ACT23146.1| hypothetical protein TBMG_00123 [Mycobacterium tuberculosis KZN 
1435]
 gi|289414410|gb|EFD11650.1| hypothetical protein TBLG_02234 [Mycobacterium tuberculosis T46]
 gi|289418610|gb|EFD15811.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289437005|gb|EFD19498.1| hypothetical protein TBXG_00123 [Mycobacterium tuberculosis KZN 
605]
 gi|289537133|gb|EFD41711.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289541769|gb|EFD45418.1| hypothetical protein TBJG_03148 [Mycobacterium tuberculosis T17]
 gi|289688417|gb|EFD55905.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689182|gb|EFD56611.1| hypothetical protein TBDG_00483 [Mycobacterium tuberculosis T92]
 gi|289696771|gb|EFD64200.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis EAS054]
 gi|289711745|gb|EFD75761.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289715787|gb|EFD79799.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308332446|gb|EFP21297.1| hypothetical protein TMCG_02331 [Mycobacterium tuberculosis SUMu003]
 gi|326905881|gb|EGE52814.1| hypothetical protein TBPG_03848 [Mycobacterium tuberculosis W-148]
 gi|328456829|gb|AEB02252.1| hypothetical protein TBSG_00123 [Mycobacterium tuberculosis KZN 
4207]
 gi|339329561|emb|CCC25197.1| hypothetical protein MAF_01230 [Mycobacterium africanum GM041182]
 gi|340003347|emb|CCC42466.1| hypothetical protein MCAN_01251 [Mycobacterium canettii CIPT 
140010059]
 gi|341600051|emb|CCC62719.1| hypothetical protein BCGM_0126 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344217940|gb|AEM98570.1| hypothetical protein MTCTRI2_0125 [Mycobacterium tuberculosis 
CTRI-2]
Length=122

 Score =  248 bits (634),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    LAGSVSAAAGIGWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARK  60
            +AGSVSAAAGIGWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARK
Sbjct  1    MAGSVSAAAGIGWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARK  60

Query  61   HRVSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEW  120
            HRVSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEW
Sbjct  61   HRVSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEW  120

Query  121  KR  122
            KR
Sbjct  121  KR  122


>gi|167966876|ref|ZP_02549153.1| hypothetical protein MtubH3_01950 [Mycobacterium tuberculosis 
H37Ra]
Length=109

 Score =  184 bits (466),  Expect = 5e-45, Method: Compositional matrix adjust.
 Identities = 88/90 (98%), Positives = 89/90 (99%), Gaps = 0/90 (0%)

Query  1   LAGSVSAAAGIGWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARK  60
           +AGSVSAAAGIGWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARK
Sbjct  1   MAGSVSAAAGIGWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARK  60

Query  61  HRVSKHRIVAAMRHCGVPVIQEDGSLYYQG  90
           HRVSKHRIVAAMRHCGVPVIQEDGSLYYQ 
Sbjct  61  HRVSKHRIVAAMRHCGVPVIQEDGSLYYQA  90


>gi|308378551|ref|ZP_07482970.2| hypothetical protein TMIG_00407 [Mycobacterium tuberculosis SUMu009]
 gi|308379701|ref|ZP_07487203.2| hypothetical protein TMJG_01306 [Mycobacterium tuberculosis SUMu010]
 gi|308352214|gb|EFP41065.1| hypothetical protein TMIG_00407 [Mycobacterium tuberculosis SUMu009]
 gi|308356179|gb|EFP45030.1| hypothetical protein TMJG_01306 [Mycobacterium tuberculosis SUMu010]
Length=74

 Score =  151 bits (382),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 73/74 (99%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  49   VQRVRVTRNARKHRVSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDG  108
            +QRVRVTRNARKHRVSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDG
Sbjct  1    MQRVRVTRNARKHRVSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDG  60

Query  109  DLIITHAMPKEWKR  122
            DLIITHAMPKEWKR
Sbjct  61   DLIITHAMPKEWKR  74


>gi|254549057|ref|ZP_05139504.1| hypothetical protein Mtube_01096 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|323717261|gb|EGB26469.1| hypothetical protein TMMG_00547 [Mycobacterium tuberculosis CDC1551A]
Length=60

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 59/60 (99%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

Query  63   VSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEWKR  122
            +SKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEWKR
Sbjct  1    MSKHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEWKR  60


>gi|227548715|ref|ZP_03978764.1| conserved hypothetical protein [Corynebacterium lipophiloflavum 
DSM 44291]
 gi|227079208|gb|EEI17171.1| conserved hypothetical protein [Corynebacterium lipophiloflavum 
DSM 44291]
Length=80

 Score = 37.7 bits (86),  Expect = 0.51, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 38/69 (56%), Gaps = 4/69 (5%)

Query  52   VRVTRNARKHRVSKHR-IVAAMRHCGVPVIQEDGSLYYQ---GRDTSGRLTEVVAVEADD  107
            +RV  +A KH +S+   I AA+    V  + +D + + +   G DT  RL E V V A D
Sbjct  1    MRVAASATKHGISEEDGIHAALFPTWVAPLDDDPAQWRELRLGFDTHARLLETVVVVASD  60

Query  108  GDLIITHAM  116
            GD ++ HAM
Sbjct  61   GDELLIHAM  69


>gi|340793304|ref|YP_004758767.1| hypothetical protein CVAR_0346 [Corynebacterium variabile DSM 
44702]
 gi|340533214|gb|AEK35694.1| hypothetical protein CVAR_0346 [Corynebacterium variabile DSM 
44702]
Length=100

 Score = 37.4 bits (85),  Expect = 0.77, Method: Compositional matrix adjust.
 Identities = 15/28 (54%), Positives = 20/28 (72%), Gaps = 0/28 (0%)

Query  90   GRDTSGRLTEVVAVEADDGDLIITHAMP  117
            G D +GR+ E +AVE  DGD ++ HAMP
Sbjct  60   GIDGNGRILEFIAVETSDGDWLVFHAMP  87


>gi|334338334|ref|YP_004543486.1| hypothetical protein Isova_2907 [Isoptericola variabilis 225]
 gi|334108702|gb|AEG45592.1| hypothetical protein Isova_2907 [Isoptericola variabilis 225]
Length=85

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 39/72 (55%), Gaps = 8/72 (11%)

Query  53   RVTRNARKH----RVSKHRIVAAMRHC--GVPVIQEDGS--LYYQGRDTSGRLTEVVAVE  104
            R+  +ARKH    R+++  ++ A +H    VP+  ED        G D SGR+ E+V + 
Sbjct  3    RLHDSARKHFRRDRLTEAGVLYAAQHSLYQVPLDDEDDPRRWLMLGFDDSGRMLELVVLV  62

Query  105  ADDGDLIITHAM  116
             D GD +I HAM
Sbjct  63   FDSGDELIIHAM  74


>gi|288923011|ref|ZP_06417166.1| hypothetical protein FrEUN1fDRAFT_6864 [Frankia sp. EUN1f]
 gi|288345629|gb|EFC80003.1| hypothetical protein FrEUN1fDRAFT_6864 [Frankia sp. EUN1f]
Length=81

 Score = 35.8 bits (81),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 26/75 (35%), Positives = 38/75 (51%), Gaps = 6/75 (8%)

Query  52   VRVTRNARKHRVSKHRIVAAMRHCGVPVIQEDGSLYYQ---GRDTSGRLTEVVAVEADDG  108
            V + R+ARKH V+   ++ A     V    +D +   +   G D SG L E+V +  DDG
Sbjct  3    VEIHRSARKHGVADADLLHAATRYLVAFALDDENPRRELRLGPDRSGNLLEIVVLLLDDG  62

Query  109  DLIITHAM---PKEW  120
              +I +AM   PK W
Sbjct  63   TELIIYAMRMRPKYW  77


>gi|86740585|ref|YP_480985.1| hypothetical protein Francci3_1880 [Frankia sp. CcI3]
 gi|86567447|gb|ABD11256.1| conserved hypothetical protein [Frankia sp. CcI3]
Length=80

 Score = 35.4 bits (80),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 38/69 (56%), Gaps = 4/69 (5%)

Query  52   VRVTRNARKHRVSKHRIV-AAMRHCGVPVIQEDGSLYYQ---GRDTSGRLTEVVAVEADD  107
            + + R+ARKH V+   I+ AA R+     + +DG  + +   G   +G L E+V +  DD
Sbjct  1    MEIHRSARKHGVADADILHAAERYVVAYSLDDDGPPWRELRLGPGGAGNLLEIVVLLLDD  60

Query  108  GDLIITHAM  116
            G  +I HAM
Sbjct  61   GTELIIHAM  69


>gi|320531226|ref|ZP_08032210.1| putative toxin-antitoxin system, toxin component [Actinomyces 
sp. oral taxon 171 str. F0337]
 gi|320136557|gb|EFW28521.1| putative toxin-antitoxin system, toxin component [Actinomyces 
sp. oral taxon 171 str. F0337]
Length=79

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 23/73 (32%), Positives = 35/73 (48%), Gaps = 13/73 (17%)

Query  52   VRVTRNARKHRVS--------KHRIVAAMRHCGVPVIQEDGSLYYQGRDTSGRLTEVVAV  103
            ++V  +A KH +S         HRI  +     VP  Q     +  G D+ GRL E+V +
Sbjct  1    MKVHNSALKHGISAADALYAANHRIYESWPDDDVPAKQ-----FVMGFDSQGRLLELVIL  55

Query  104  EADDGDLIITHAM  116
              D G+ ++ HAM
Sbjct  56   TFDSGNQLLIHAM  68


>gi|146281698|ref|YP_001171851.1| nitrogen fixation negative regulatory protein [Pseudomonas stutzeri 
A1501]
 gi|25136598|emb|CAC44174.3| NifL protein [Pseudomonas stutzeri]
 gi|145569903|gb|ABP79009.1| nitrogen fixation negative regulatory protein [Pseudomonas stutzeri 
A1501]
Length=537

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 17/58 (30%), Positives = 25/58 (44%), Gaps = 0/58 (0%)

Query  12   GWVGLNVTETNRDQCYRVERTTVDALTHPEYRVHTRGVQRVRVTRNARKHRVSKHRIV  69
             W G+ V     D CY  E T    L   E  +H  G+ R    ++  + RVS  R++
Sbjct  113  AWSGMLVNRRKDDSCYLAELTVAPVLDEHERTIHYLGMHRDSSDQHKLEQRVSNQRLI  170


>gi|326476979|gb|EGE00989.1| vacuolar protein sorting protein [Trichophyton equinum CBS 127.97]
Length=1458

 Score = 34.3 bits (77),  Expect = 6.3, Method: Composition-based stats.
 Identities = 15/36 (42%), Positives = 21/36 (59%), Gaps = 0/36 (0%)

Query  87   YYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEWKR  122
            Y +  DTS    E V ++ DDGDL +T    K+W+R
Sbjct  667  YLERSDTSSGEDETVILKTDDGDLFVTRDHGKKWQR  702


>gi|326472159|gb|EGD96168.1| vacuolar protein sorting protein [Trichophyton tonsurans CBS 
112818]
Length=1486

 Score = 34.3 bits (77),  Expect = 6.5, Method: Composition-based stats.
 Identities = 15/36 (42%), Positives = 21/36 (59%), Gaps = 0/36 (0%)

Query  87   YYQGRDTSGRLTEVVAVEADDGDLIITHAMPKEWKR  122
            Y +  DTS    E V ++ DDGDL +T    K+W+R
Sbjct  695  YLERSDTSSGEDETVILKTDDGDLFVTRDHGKKWQR  730



Lambda     K      H
   0.320    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127525862838




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40