BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0128
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607270|ref|NP_214642.1| transmembrane protein [Mycobacteriu... 520 6e-146
gi|289756191|ref|ZP_06515569.1| transmembrane protein [Mycobacte... 518 4e-145
gi|298527518|ref|ZP_07014927.1| conserved hypothetical protein [... 490 7e-137
gi|240168115|ref|ZP_04746774.1| hypothetical protein MkanA1_0229... 384 8e-105
gi|183980358|ref|YP_001848649.1| hypothetical protein MMAR_0327 ... 352 2e-95
gi|336459935|gb|EGO38847.1| putative membrane protein [Mycobacte... 334 7e-90
gi|254822397|ref|ZP_05227398.1| hypothetical protein MintA_20861... 334 1e-89
gi|41409628|ref|NP_962464.1| hypothetical protein MAP3530 [Mycob... 333 1e-89
gi|183982154|ref|YP_001850445.1| hypothetical protein MMAR_2141 ... 301 7e-80
gi|296167294|ref|ZP_06849696.1| conserved hypothetical protein [... 293 1e-77
gi|342859462|ref|ZP_08716116.1| hypothetical protein MCOL_11298 ... 270 1e-70
gi|317507328|ref|ZP_07965067.1| transmembrane protein [Segnilipa... 261 9e-68
gi|296139180|ref|YP_003646423.1| hypothetical protein Tpau_1457 ... 234 7e-60
gi|169630291|ref|YP_001703940.1| hypothetical protein MAB_3210c ... 227 1e-57
gi|296393990|ref|YP_003658874.1| hypothetical protein Srot_1581 ... 226 2e-57
gi|333992792|ref|YP_004525406.1| transmembrane protein [Mycobact... 217 2e-54
gi|333992823|ref|YP_004525437.1| transmembrane protein [Mycobact... 201 1e-49
gi|340794620|ref|YP_004760083.1| hypothetical protein CVAR_1656 ... 117 1e-24
gi|68536505|ref|YP_251210.1| hypothetical protein jk1419 [Coryne... 90.1 3e-16
gi|340794389|ref|YP_004759852.1| hypothetical protein CVAR_1427 ... 90.1 3e-16
gi|295689663|ref|YP_003593356.1| hypothetical protein Cseg_2276 ... 89.0 6e-16
gi|334564320|ref|ZP_08517311.1| hypothetical protein CbovD2_0707... 88.6 9e-16
gi|87198096|ref|YP_495353.1| hypothetical protein Saro_0070 [Nov... 88.6 9e-16
gi|335419278|ref|ZP_08550333.1| hypothetical protein SSPSH_01313... 87.8 1e-15
gi|325675418|ref|ZP_08155102.1| hypothetical protein HMPREF0724_... 86.7 4e-15
gi|312140944|ref|YP_004008280.1| integral membrane protein [Rhod... 86.3 4e-15
gi|300781532|ref|ZP_07091386.1| conserved hypothetical protein [... 85.9 6e-15
gi|326386211|ref|ZP_08207835.1| hypothetical protein Y88_2103 [N... 84.7 1e-14
gi|336325583|ref|YP_004605549.1| hypothetical protein CRES_1029 ... 83.6 3e-14
gi|226363527|ref|YP_002781309.1| hypothetical protein ROP_41170 ... 83.2 3e-14
gi|111021167|ref|YP_704139.1| hypothetical protein RHA1_ro04188 ... 81.3 1e-13
gi|334346089|ref|YP_004554641.1| hypothetical protein Sphch_2481... 80.9 2e-13
gi|302381851|ref|YP_003817674.1| hypothetical protein Bresu_0736... 77.4 2e-12
gi|90420229|ref|ZP_01228137.1| conserved hypothetical protein [A... 77.0 3e-12
gi|226309187|ref|YP_002769147.1| hypothetical protein RER_57000 ... 77.0 3e-12
gi|167646503|ref|YP_001684166.1| hypothetical protein Caul_2541 ... 76.3 4e-12
gi|229491801|ref|ZP_04385622.1| putative membrane protein [Rhodo... 75.9 5e-12
gi|332185386|ref|ZP_08387134.1| hypothetical protein SUS17_455 [... 75.9 6e-12
gi|169630488|ref|YP_001704137.1| hypothetical protein MAB_3407 [... 73.6 2e-11
gi|172040718|ref|YP_001800432.1| hypothetical protein cur_1038 [... 72.0 9e-11
gi|146342785|ref|YP_001207833.1| hypothetical protein BRADO5962 ... 71.2 1e-10
gi|296284806|ref|ZP_06862804.1| hypothetical protein CbatJ_14356... 69.7 4e-10
gi|103487188|ref|YP_616749.1| hypothetical protein Sala_1703 [Sp... 68.9 7e-10
gi|341613814|ref|ZP_08700683.1| hypothetical protein CJLT1_02637... 67.0 2e-09
gi|326381363|ref|ZP_08203057.1| hypothetical protein SCNU_00390 ... 65.9 6e-09
gi|334139631|ref|YP_004532825.1| hypothetical protein PP1Y_AT297... 65.1 1e-08
gi|148550709|ref|YP_001260148.1| hypothetical protein Swit_5273 ... 65.1 1e-08
gi|319947729|ref|ZP_08021936.1| hypothetical protein ES5_00430 [... 63.5 3e-08
gi|209551622|ref|YP_002283539.1| hypothetical protein Rleg2_4051... 62.0 8e-08
gi|116249877|ref|YP_765715.1| transmembrane protein [Rhizobium l... 61.2 2e-07
>gi|15607270|ref|NP_214642.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15839509|ref|NP_334546.1| hypothetical protein MT0136 [Mycobacterium tuberculosis CDC1551]
gi|31791307|ref|NP_853800.1| transmembrane protein [Mycobacterium bovis AF2122/97]
52 more sequence titles
Length=259
Score = 520 bits (1340), Expect = 6e-146, Method: Compositional matrix adjust.
Identities = 258/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
+QREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT
Sbjct 1 MQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
Query 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP
Sbjct 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS
Sbjct 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
Query 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRAL 240
FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRAL
Sbjct 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRAL 240
Query 241 RRGELDSGTSTPATNYGSS 259
RRGELDSGTSTPATNYGSS
Sbjct 241 RRGELDSGTSTPATNYGSS 259
>gi|289756191|ref|ZP_06515569.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
gi|289696778|gb|EFD64207.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
Length=259
Score = 518 bits (1333), Expect = 4e-145, Method: Compositional matrix adjust.
Identities = 257/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)
Query 1 VQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
+QREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT
Sbjct 1 MQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
Query 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP
Sbjct 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS
Sbjct 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
Query 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRAL 240
FVLGAAAGGAISMVVTGPQMLAVAAVVCAATT YTYLHADRRGLVNQKRPQPGKRLFRAL
Sbjct 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTDYTYLHADRRGLVNQKRPQPGKRLFRAL 240
Query 241 RRGELDSGTSTPATNYGSS 259
RRGELDSGTSTPATNYGSS
Sbjct 241 RRGELDSGTSTPATNYGSS 259
>gi|298527518|ref|ZP_07014927.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308231471|ref|ZP_07412550.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308369308|ref|ZP_07417296.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
23 more sequence titles
Length=245
Score = 490 bits (1262), Expect = 7e-137, Method: Compositional matrix adjust.
Identities = 244/245 (99%), Positives = 245/245 (100%), Gaps = 0/245 (0%)
Query 15 VLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVI 74
+LAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVI
Sbjct 1 MLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVI 60
Query 75 ASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTS 134
ASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTS
Sbjct 61 ASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTS 120
Query 135 FVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMV 194
FVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMV
Sbjct 121 FVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMV 180
Query 195 VTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRALRRGELDSGTSTPAT 254
VTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRALRRGELDSGTSTPAT
Sbjct 181 VTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRALRRGELDSGTSTPAT 240
Query 255 NYGSS 259
NYGSS
Sbjct 241 NYGSS 245
>gi|240168115|ref|ZP_04746774.1| hypothetical protein MkanA1_02292 [Mycobacterium kansasii ATCC
12478]
Length=228
Score = 384 bits (986), Expect = 8e-105, Method: Compositional matrix adjust.
Identities = 183/228 (81%), Positives = 206/228 (91%), Gaps = 0/228 (0%)
Query 1 VQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
+Q+EIYD EARLSWVLA LAG+LGATAFTHSAGYFVTFMTGN+QRAVLG+F DD W+S+T
Sbjct 1 MQKEIYDSEARLSWVLAGLAGVLGATAFTHSAGYFVTFMTGNAQRAVLGVFRDDVWLSIT 60
Query 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
ASLLI+ FVAGVV+AS+CRRHFW HPHGPTVLTTFSL+ A +DI+LGGW +++LDFVP
Sbjct 61 ASLLIVCFVAGVVVASICRRHFWVDHPHGPTVLTTFSLVAATALDILLGGWEQTLLDFVP 120
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIER LAGGKVEDWLGYFLL+AS
Sbjct 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERQLAGGKVEDWLGYFLLYAS 180
Query 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQK 228
F LGA AGG IS+VV G QMLAVA +VCA TTGYTY H+DRR L+++
Sbjct 181 FSLGAVAGGVISLVVGGSQMLAVATIVCAVTTGYTYFHSDRRALLSES 228
>gi|183980358|ref|YP_001848649.1| hypothetical protein MMAR_0327 [Mycobacterium marinum M]
gi|183173684|gb|ACC38794.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=226
Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/226 (74%), Positives = 196/226 (87%), Gaps = 0/226 (0%)
Query 1 VQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
++ +I+D EARLSWVLA LAG+LGATAFTHSAGYFVTFMTGN+QRAVLG F DD W+SVT
Sbjct 1 MRSDIFDSEARLSWVLAVLAGVLGATAFTHSAGYFVTFMTGNAQRAVLGYFRDDVWLSVT 60
Query 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
A LL++ F+ GVV+ASVCRRHFW HPHGPTVLTTFSL+ A +DI++GGW S LDF+P
Sbjct 61 AGLLLVCFLVGVVVASVCRRHFWVDHPHGPTVLTTFSLVAATALDIVIGGWEGSQLDFLP 120
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
I+ VVFG+G+LNTSFVKDGEVSVPLSYVTGTLVKMGQGIERH+AGG+ DWLGYF+L AS
Sbjct 121 IMLVVFGVGSLNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHIAGGQAADWLGYFMLLAS 180
Query 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVN 226
F+LGA GG IS+VV+G QMLAVA+ VCA TTG+TY H+DRR L+
Sbjct 181 FILGATVGGTISLVVSGTQMLAVASTVCALTTGFTYFHSDRRALLK 226
>gi|336459935|gb|EGO38847.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=230
Score = 334 bits (857), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 165/227 (73%), Positives = 186/227 (82%), Gaps = 0/227 (0%)
Query 1 VQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
V EI + E RLSWVLA LAG+LGATAFTHSAGYFVTFMTGN+QRA+LG F D +SVT
Sbjct 3 VPSEINNSETRLSWVLAVLAGVLGATAFTHSAGYFVTFMTGNAQRAMLGYFRGDVVLSVT 62
Query 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
A +LI+ FVAGVVIASVCRRHFW HPHGPTVLTTFSL+ A VD++ GW E++LDF P
Sbjct 63 AGVLIVCFVAGVVIASVCRRHFWVDHPHGPTVLTTFSLVAATLVDVIDEGWEENLLDFAP 122
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
I+ V FGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERH+AGG DWLGYFLL AS
Sbjct 123 IMLVTFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHIAGGTAADWLGYFLLFAS 182
Query 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQ 227
FV+GA GG IS+ V G ML A V+CA TTGYTY H+DRR L+++
Sbjct 183 FVVGATVGGFISLFVNGTSMLVAATVMCALTTGYTYFHSDRRALLDE 229
>gi|254822397|ref|ZP_05227398.1| hypothetical protein MintA_20861 [Mycobacterium intracellulare
ATCC 13950]
Length=234
Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/229 (73%), Positives = 187/229 (82%), Gaps = 0/229 (0%)
Query 3 REIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTAS 62
EI + E+RLSWVLA LAGILGATAFTHSAGYFVTFMTGN+QRA+LG F D +SVTA
Sbjct 3 NEINNSESRLSWVLAVLAGILGATAFTHSAGYFVTFMTGNAQRAMLGYFRGDVLLSVTAG 62
Query 63 LLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPIL 122
+LI+ FV+GVVIASVCRRHFW AHPHGPTVLTTFSL+ A VD++ GW E++LDF PI+
Sbjct 63 VLIVCFVSGVVIASVCRRHFWVAHPHGPTVLTTFSLLAATMVDVIDEGWEENLLDFAPIM 122
Query 123 FVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFV 182
V FGIGALNTSFVKDGEVSV LSYVTGTLVKMGQGIERHLAGG +WLGYFLL ASFV
Sbjct 123 LVAFGIGALNTSFVKDGEVSVSLSYVTGTLVKMGQGIERHLAGGTAAEWLGYFLLFASFV 182
Query 183 LGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQ 231
+GA GG IS+ V G ML VA VVCA TTGYTY H+DRR L++ +
Sbjct 183 VGATVGGFISLFVNGTWMLVVATVVCALTTGYTYFHSDRRALLDAGEKE 231
>gi|41409628|ref|NP_962464.1| hypothetical protein MAP3530 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466686|ref|YP_884301.1| hypothetical protein MAV_5184 [Mycobacterium avium 104]
gi|254777530|ref|ZP_05219046.1| hypothetical protein MaviaA2_23066 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398459|gb|AAS06080.1| hypothetical protein MAP_3530 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167973|gb|ABK68870.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=228
Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/224 (74%), Positives = 185/224 (83%), Gaps = 0/224 (0%)
Query 4 EIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASL 63
EI + E RLSWVLA LAG+LGATAFTHSAGYFVTFMTGN+QRA+LG F D +SVTA +
Sbjct 4 EINNSETRLSWVLAVLAGVLGATAFTHSAGYFVTFMTGNAQRAMLGYFRGDVVLSVTAGV 63
Query 64 LILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
LI+ FVAGVVIASVCRRHFW HPHGPTVLTTFSL+ A VD++ GW E++LDF PI+
Sbjct 64 LIVCFVAGVVIASVCRRHFWVDHPHGPTVLTTFSLVAATLVDVIDEGWEENLLDFAPIML 123
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVL 183
V FGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERH+AGG DWLGYFLL ASFV+
Sbjct 124 VTFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHIAGGTAADWLGYFLLFASFVV 183
Query 184 GAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQ 227
GA GG IS+ V G ML A V+CA TTGYTY H+DRR L+++
Sbjct 184 GATVGGFISLFVNGTSMLVAATVMCALTTGYTYFHSDRRALLDE 227
>gi|183982154|ref|YP_001850445.1| hypothetical protein MMAR_2141 [Mycobacterium marinum M]
gi|183175480|gb|ACC40590.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=259
Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 151/231 (66%), Positives = 189/231 (82%), Gaps = 0/231 (0%)
Query 1 VQREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVT 60
V RE++D EARLSW+LAALAG++GA AFTH+AGYFVTFMTGNS+RAVLG F +D W+S++
Sbjct 4 VMREMFDREARLSWILAALAGLVGAAAFTHTAGYFVTFMTGNSERAVLGFFTNDRWLSIS 63
Query 61 ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
A+LL+ FVAGVVIAS+CR+H W HPHGPTVLTT L AA +DI++ GW + F+P
Sbjct 64 AALLLASFVAGVVIASLCRQHIWVDHPHGPTVLTTLCLGIAAALDIVVHGWSTGRVTFLP 123
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
IL V FGIGALNTSFVK+GEVS+ LSY+TGTLVK+GQGI+RHL+GG+ WLGY LL+AS
Sbjct 124 ILAVTFGIGALNTSFVKNGEVSISLSYMTGTLVKLGQGIQRHLSGGQATAWLGYLLLYAS 183
Query 181 FVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQ 231
+++GA GG +S+V+ G QMLAVA V CA TTGYTY HADRR L+ ++ +
Sbjct 184 YIVGATVGGVLSLVIGGSQMLAVATVACALTTGYTYFHADRRALLKERNGE 234
>gi|296167294|ref|ZP_06849696.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897238|gb|EFG76842.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=238
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/233 (65%), Positives = 186/233 (80%), Gaps = 1/233 (0%)
Query 4 EIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASL 63
E ++ EARLSWVLAALAG++GA +FTHSAGYFV F+TGN+QRAVLG F + W++V+A L
Sbjct 4 ETFNSEARLSWVLAALAGVVGAISFTHSAGYFVVFITGNAQRAVLGYFTGEGWLAVSAGL 63
Query 64 LILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
LI+ FVAGVV+AS+CRR FW HPHGPTVLTTFSL A VD+ GW ++++DF P++
Sbjct 64 LIVAFVAGVVVASLCRRFFWVDHPHGPTVLTTFSLAAATVVDVFDVGWTQNLVDFAPMML 123
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLA-GGKVEDWLGYFLLHASFV 182
+ FG GALNTSFVK+GEVSVPLSYVTGT VKMGQGIERH+A GG + DWLGYFLL ASF+
Sbjct 124 LAFGTGALNTSFVKNGEVSVPLSYVTGTTVKMGQGIERHIAGGGNIGDWLGYFLLLASFM 183
Query 183 LGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKR 235
+GAA GG IS+VV G ML +A VCA TTGYTY H DRR L+ ++ + ++
Sbjct 184 VGAAVGGFISVVVNGTWMLVMATSVCAVTTGYTYFHQDRRALLMERSEKKHRQ 236
>gi|342859462|ref|ZP_08716116.1| hypothetical protein MCOL_11298 [Mycobacterium colombiense CECT
3035]
gi|342133703|gb|EGT86906.1| hypothetical protein MCOL_11298 [Mycobacterium colombiense CECT
3035]
Length=190
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/189 (71%), Positives = 151/189 (80%), Gaps = 0/189 (0%)
Query 39 MTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSL 98
MTGN+QRAVLG F D +S TA +LI+ FVAGVV+ASVCRRHFW AHPHGPTVLTTFSL
Sbjct 1 MTGNAQRAVLGYFRGDVLLSATAGVLIVCFVAGVVVASVCRRHFWVAHPHGPTVLTTFSL 60
Query 99 IFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQG 158
A D++ GW E++LDF PI+ V FGIG+LNTSFVKDGEVSVPLSYVTGTLVKMGQG
Sbjct 61 AAATVADVVDEGWEENLLDFAPIMLVAFGIGSLNTSFVKDGEVSVPLSYVTGTLVKMGQG 120
Query 159 IERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLH 218
IERH+AGG DWLGYFLL ASF +GA GG IS +V G ML VA V CA TTGYTY H
Sbjct 121 IERHIAGGSASDWLGYFLLFASFAVGATVGGFISTLVNGTWMLVVATVGCALTTGYTYFH 180
Query 219 ADRRGLVNQ 227
+DRR L+++
Sbjct 181 SDRRALLDE 189
>gi|317507328|ref|ZP_07965067.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974]
gi|316254373|gb|EFV13704.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974]
Length=225
Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 133/224 (60%), Positives = 165/224 (74%), Gaps = 7/224 (3%)
Query 9 EARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFF 68
EARLSWVLA+LAG+LGA+AF H+ GYFVTFMTGN++RAVL F V A L+IL F
Sbjct 5 EARLSWVLASLAGLLGASAFIHTEGYFVTFMTGNTERAVLSSFRGQTMFGVAAGLIILSF 64
Query 69 VAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGI 128
++GV++AS+CRRHFW+ HPHGPT+LTT +LI AA D ++ W +D + +LFV FGI
Sbjct 65 LSGVIVASLCRRHFWSGHPHGPTMLTTVALILAAAFDAVVD-WGGDDIDLLTVLFVAFGI 123
Query 129 GALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAG 188
G+LNTSF K+GEVSVPLSYVTGT VKMGQGIERH++GG DWLGYFL+ SF GA G
Sbjct 124 GSLNTSFTKNGEVSVPLSYVTGTWVKMGQGIERHISGGDYADWLGYFLVLVSFASGALIG 183
Query 189 GAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQP 232
G +S+V TG ML +AA VC AT+ YT++H P+P
Sbjct 184 GLLSLVETGWSMLMIAAGVCLATSVYTFVHE------RNNPPEP 221
>gi|296139180|ref|YP_003646423.1| hypothetical protein Tpau_1457 [Tsukamurella paurometabola DSM
20162]
gi|296027314|gb|ADG78084.1| protein of unknown function DUF1275 [Tsukamurella paurometabola
DSM 20162]
Length=247
Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/239 (58%), Positives = 170/239 (72%), Gaps = 20/239 (8%)
Query 1 VQREIYDG-EARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSV 59
V RE G +ARLSW+LA +AG++GA AF HSAGYFVTFMTGN++RAVL +W SV
Sbjct 14 VSREAAIGADARLSWLLAGVAGMVGAVAFLHSAGYFVTFMTGNTERAVL------SWFSV 67
Query 60 T------------ASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIM 107
+ A+ LI+ FVAGVV+AS CRR FW HPHGPTVLTT L+ A+G+D
Sbjct 68 SDKEKVAGAGALAATALIVAFVAGVVVASFCRRFFWHGHPHGPTVLTTVGLLAASGLDFW 127
Query 108 LGGWHESMLDFVPILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAG-G 166
G E + FVPIL + F +GALNTSFVK+GEVSVPLSYVTGTLVK+GQGIERH +G G
Sbjct 128 FDGVAEPEVRFVPILIITFSLGALNTSFVKNGEVSVPLSYVTGTLVKLGQGIERHASGNG 187
Query 167 KVEDWLGYFLLHASFVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLV 225
V DWLGY L++ F+LGAA GG + + TGPQ++ A V+C TT T+ H+DRR ++
Sbjct 188 TVYDWLGYALVYVGFLLGAAVGGVVGSIFTGPQVILAAGVLCGITTLVTFFHSDRRAIL 246
>gi|169630291|ref|YP_001703940.1| hypothetical protein MAB_3210c [Mycobacterium abscessus ATCC
19977]
gi|169242258|emb|CAM63286.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=272
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/235 (54%), Positives = 163/235 (70%), Gaps = 10/235 (4%)
Query 1 VQREIYDG-EARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFG--DDAWM 57
+ RE G EARLSW+L+ LAG++GA AF HSAGYFVTFMTGN++RAVL F D +
Sbjct 37 ITREAAIGSEARLSWLLSGLAGMVGAVAFLHSAGYFVTFMTGNTERAVLTWFKVTDKQQV 96
Query 58 S----VTASLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHE 113
+ + A +I F+ GV++AS CRR FW HPHG TVLTT L+ AA VD
Sbjct 97 AGAGPIAAISMIGAFLFGVIVASYCRRKFWKNHPHGATVLTTVGLLAAAAVDFYQDRSFT 156
Query 114 SMLD--FVPILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAG-GKVED 170
+ +D F PIL + F IGALNTSFVK GE ++PLSYVTGT+VK+GQGIERHL G G V +
Sbjct 157 ANIDVHFTPILLLAFSIGALNTSFVKKGETAIPLSYVTGTVVKLGQGIERHLFGRGSVFE 216
Query 171 WLGYFLLHASFVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLV 225
WLGY +L+ SFVLGAA GG I+ V +G +++ ++C ATT T+ ++DR+ ++
Sbjct 217 WLGYAMLYLSFVLGAATGGVIASVYSGSKVILTVGIICGATTLVTFFYSDRKTIL 271
>gi|296393990|ref|YP_003658874.1| hypothetical protein Srot_1581 [Segniliparus rotundus DSM 44985]
gi|296181137|gb|ADG98043.1| protein of unknown function DUF1275 [Segniliparus rotundus DSM
44985]
Length=241
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/234 (55%), Positives = 162/234 (70%), Gaps = 10/234 (4%)
Query 2 QREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTA 61
++ ++DGEARLSWVLAALAG+LGA+AF H+ GYFVTFMTGN++RAVL F V A
Sbjct 9 RKALFDGEARLSWVLAALAGLLGASAFIHTEGYFVTFMTGNTERAVLSYFRGQGAFGVAA 68
Query 62 SLLILFFVAGVVIASVCRRHFWAAHPHGPTV----LTTFSLIFAAGVDIMLGGWHESMLD 117
+L++L F++GVV+AS+CRRHFW+ HPHGPT+ + +F A VD W +D
Sbjct 69 ALILLSFLSGVVVASLCRRHFWSGHPHGPTMLATLALIAAAVFDAIVD-----WGSENID 123
Query 118 FVPILFVVFGIGALNTSFVK-DGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFL 176
+LFV FG+GALNTSF GEVS+PLSYVTGT VKMGQGIERH++GG +WLGYFL
Sbjct 124 LYTVLFVAFGVGALNTSFNNASGEVSIPLSYVTGTWVKMGQGIERHISGGDYSEWLGYFL 183
Query 177 LHASFVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRP 230
L SF GA GG +S + TG MLA AA VC + YT+LH +++ P
Sbjct 184 LLLSFASGALCGGLLSRIETGFSMLATAAGVCLVVSIYTHLHERFNPPADERPP 237
>gi|333992792|ref|YP_004525406.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333488760|gb|AEF38152.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=253
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/232 (61%), Positives = 171/232 (74%), Gaps = 8/232 (3%)
Query 3 REIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTA- 61
R++YD E +LSWVLA LAG+LGATAFTHSAGYFVTFMTGN+QRAV+G + +D W + +
Sbjct 22 RKLYDSETKLSWVLAGLAGLLGATAFTHSAGYFVTFMTGNAQRAVMGYYAEDDWAASSPW 81
Query 62 -----SLLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESML 116
+LL++ FVAGV+ AS+CRR+FW PH TVLTT +L+ A +D L G E L
Sbjct 82 LALSAALLLVAFVAGVISASLCRRYFWPTRPHSTTVLTTLALVLATLLDGFLLGGPELPL 141
Query 117 DFVPILFVVFGIGALNTSFV-KDGEVSVPLSYVTGTLVKMGQGIERHLAG-GKVEDWLGY 174
F PI+ + FGIGALN +F+ K GEVS+PLSYVTGTLVKMGQGI RHL G ++ WLGY
Sbjct 142 PFFPIVLMTFGIGALNATFIDKKGEVSIPLSYVTGTLVKMGQGIARHLLGVDEITAWLGY 201
Query 175 FLLHASFVLGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVN 226
FLL SFVLGA GGAI MV G MLA+A+++CA TT YTY +ADRR L
Sbjct 202 FLLFGSFVLGAGIGGAIGMVAGGTYMLAIASLICALTTVYTYFYADRRQLFQ 253
>gi|333992823|ref|YP_004525437.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333488791|gb|AEF38183.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=226
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/220 (55%), Positives = 155/220 (71%), Gaps = 0/220 (0%)
Query 3 REIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTAS 62
R YD E +LSWVLAALAG+L ATA+THS GYFVTFMTGN+ RAVLG+F + W+S++A+
Sbjct 3 RRHYDSETKLSWVLAALAGVLAATAYTHSEGYFVTFMTGNAGRAVLGVFDGNEWLSISAA 62
Query 63 LLILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPIL 122
L+ F+ GV+ ASV RR W PHG +LT +L+ A +D + G L +PIL
Sbjct 63 ALLFSFLGGVLTASVFRRRVWPHQPHGALLLTAVALLAATLLDWTVAGGPSLPLPLLPIL 122
Query 123 FVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFV 182
V +G+GALNT+FV+DGEVS+PLSYVTGT+VK+GQGIERH GG + DWLG+F+L A +
Sbjct 123 LVAYGVGALNTTFVRDGEVSIPLSYVTGTVVKLGQGIERHFNGGSIADWLGHFMLLAGYT 182
Query 183 LGAAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRR 222
GAA GG IS+ G ML +A VC YT+ + DRR
Sbjct 183 SGAAVGGCISLAAGGTWMLGIATAVCVLAMWYTHRYVDRR 222
>gi|340794620|ref|YP_004760083.1| hypothetical protein CVAR_1656 [Corynebacterium variabile DSM
44702]
gi|340534530|gb|AEK37010.1| putative membrane protein [Corynebacterium variabile DSM 44702]
Length=262
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/187 (37%), Positives = 107/187 (58%), Gaps = 1/187 (0%)
Query 30 HSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVIASVCRRHFWAAHPHG 89
H+ G++VTFMTGN++R +L + + ++A +L F+ GV++A+ R +W HG
Sbjct 62 HTDGWYVTFMTGNTERMILEHAKGEHVLGISALTTVLVFILGVMVATWARIRWWRKSRHG 121
Query 90 PTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTSFVKDGEVSVPLSYVT 149
TVLTT + A D+ G + +P+L + FG+GALNTS ++ +V++PLSYVT
Sbjct 122 ATVLTTGAAYLAWFADVATEG-ASDLFGVIPVLCLAFGLGALNTSVSRNNQVAMPLSYVT 180
Query 150 GTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMVVTGPQMLAVAAVVCA 209
GTLVKMGQG H+A W+ + +A F+ G G + + LAV A++C
Sbjct 181 GTLVKMGQGFALHMARVSRWVWVSQAVTYAGFLGGILTGAVLFVSAGTDDTLAVLAILCT 240
Query 210 ATTGYTY 216
T T+
Sbjct 241 LITLATW 247
>gi|68536505|ref|YP_251210.1| hypothetical protein jk1419 [Corynebacterium jeikeium K411]
gi|260577635|ref|ZP_05845572.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|68264104|emb|CAI37592.1| putative membrane protein [Corynebacterium jeikeium K411]
gi|258604240|gb|EEW17480.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=225
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/223 (33%), Positives = 115/223 (52%), Gaps = 12/223 (5%)
Query 8 GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILF 67
GE L+ L+++AG + F + GYF++FM+GN+ R + +++TA ++
Sbjct 7 GEHALAIYLSSIAGFVDTLGFLYLGGYFLSFMSGNTTRLTAAVNAGKWDVAMTAGGVMAL 66
Query 68 FVAGV----VIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
F+ GV +I+ + RR+ +L + A V ++ G HE + +
Sbjct 67 FLIGVGIGALISQLGRRYLPPTRTREAILLFICTTSTIASVLVLTG--HEQL----AVYS 120
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVL 183
+ F +GA+N++F +DGEVS+ L+Y+TGTLVKM Q L GG DWL YF L +
Sbjct 121 LSFTVGAMNSTFERDGEVSISLTYMTGTLVKMSQRFVAALFGGPHLDWLRYFALWMALAC 180
Query 184 GAAAGGAISMVVTGPQMLAVAAVVCAAT-TGYTYLHADR-RGL 224
GA GG + + V +L V ++ A T T Y R RGL
Sbjct 181 GALLGGWMYVQVGLHAVLVVTGMLYAGTVTALVYRQWRRNRGL 223
>gi|340794389|ref|YP_004759852.1| hypothetical protein CVAR_1427 [Corynebacterium variabile DSM
44702]
gi|340534299|gb|AEK36779.1| putative membrane protein [Corynebacterium variabile DSM 44702]
Length=225
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/229 (32%), Positives = 111/229 (49%), Gaps = 16/229 (6%)
Query 8 GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILF 67
GE L+ L LAG + + F + G F++FM+GN+ R D ++V A +
Sbjct 7 GEQLLAVALTVLAGFVDSVGFLYLGGVFLSFMSGNTTRFATAAVEGDGNLAVLAGSCLGL 66
Query 68 FVAGVVIASVCRR---HFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFV 124
F+ GV++ ++ R + W V+ T + +F G+ +L + +L +
Sbjct 67 FLGGVILGALVHRLARNLWDLTRGREAVMVTVTALF--GLSALLVALDT---ERAAMLVL 121
Query 125 VFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLG 184
GIGALN+ F +DGEV+VPL+Y+TGTLVKMGQ + GG W+ + LL G
Sbjct 122 SVGIGALNSVFERDGEVAVPLTYMTGTLVKMGQRLVDSFFGGGHIRWISHLLLWLGLATG 181
Query 185 AAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPG 233
A GGA+ + G + V A GY L +V + R + G
Sbjct 182 -AVGGALVFEILGISTVYVIA-------GYMLLLTVVSQVVREGRRRAG 222
>gi|295689663|ref|YP_003593356.1| hypothetical protein Cseg_2276 [Caulobacter segnis ATCC 21756]
gi|295431566|gb|ADG10738.1| protein of unknown function DUF1275 [Caulobacter segnis ATCC
21756]
Length=213
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/171 (39%), Positives = 94/171 (55%), Gaps = 9/171 (5%)
Query 8 GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASL-LIL 66
GE L+ L+ +AG + A F G+FV+FM+GNS R +GL W +V L L+
Sbjct 7 GEVMLAVTLSGVAGYVDAIGFLKLGGFFVSFMSGNSTRLGVGL-ATAHWAAVATVLTLVA 65
Query 67 FFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVF 126
FVAGVV+ ++ R F + P VL ++ A+G ++ G+ D + V
Sbjct 66 SFVAGVVLGALTARAF-GENRRSP-VLVLEGILLASGATLLGFGY-----DTAGVTAVAM 118
Query 127 GIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLL 177
+GA N F K+G+V+V L+Y+TG LVK GQ I L GG+ DWL Y LL
Sbjct 119 AMGAENAVFQKNGDVAVGLTYMTGALVKAGQRIAGALVGGEPSDWLRYVLL 169
>gi|334564320|ref|ZP_08517311.1| hypothetical protein CbovD2_07078 [Corynebacterium bovis DSM
20582]
Length=225
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/185 (37%), Positives = 92/185 (50%), Gaps = 10/185 (5%)
Query 8 GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQR-AVLGLFGDDAWMSVTASLLIL 66
GE L+ LAA++G + F G F++FM+GN+ R AV G+ +TA + L
Sbjct 7 GERVLALTLAAVSGYADSLGFMFFGGVFLSFMSGNTTRMAVTGVEEHPDLFWLTARCIAL 66
Query 67 FFVAGVVIASVCRR---HFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
F V GV++ +V R W + VL T S F G GW +LF
Sbjct 67 FLV-GVMLGAVVHRLATRRWGVYRAREAVLVTVSTAFVLGAAAHAVGW-----SLPAMLF 120
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVL 183
V G+GA+N+ F + GEVS+PL+YVTGTLVK Q I GG W+ F L +
Sbjct 121 VSLGVGAVNSVFERKGEVSIPLTYVTGTLVKTAQRIVDSFFGGDHRAWIYPFTLWVCLAV 180
Query 184 GAAAG 188
GA G
Sbjct 181 GALLG 185
>gi|87198096|ref|YP_495353.1| hypothetical protein Saro_0070 [Novosphingobium aromaticivorans
DSM 12444]
gi|87133777|gb|ABD24519.1| protein of unknown function DUF1275 [Novosphingobium aromaticivorans
DSM 12444]
Length=212
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/185 (38%), Positives = 99/185 (54%), Gaps = 11/185 (5%)
Query 6 YD-GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLL 64
YD R + LAA+AG + A F + GYFV+FM+GN+ R + L G ++ +L
Sbjct 4 YDRNRRRFAIALAAMAGFVDAVGFLSADGYFVSFMSGNTTRLGVAL-GTGPSTALMPLVL 62
Query 65 ILFFVAGVVI-ASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
I FV GV + A V RR P ++TT L+ AA LG L V +
Sbjct 63 IAGFVGGVALGALVSRRAGTFRKPAVVALVTT--LLLAAATGRALG------LPAVMLCG 114
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVL 183
+V +GALN +F + GEV+V L+Y+TG LVK+GQG+ HLAG + W + L + +
Sbjct 115 LVMAMGALNNTFQRGGEVAVGLTYMTGALVKLGQGLAAHLAGERATGWTSWAQLWSGLLA 174
Query 184 GAAAG 188
GA G
Sbjct 175 GAVLG 179
>gi|335419278|ref|ZP_08550333.1| hypothetical protein SSPSH_01313 [Salinisphaera shabanensis E1L3A]
gi|334896895|gb|EGM35037.1| hypothetical protein SSPSH_01313 [Salinisphaera shabanensis E1L3A]
Length=222
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/158 (38%), Positives = 89/158 (57%), Gaps = 10/158 (6%)
Query 9 EARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAW-MSVTASLLILF 67
E ++ L AL+G + A F GYFV+FM+GNS R +GL + AW + ++LI
Sbjct 8 ERVIAAALTALSGYVDAMGFIALGGYFVSFMSGNSTRLGVGL--ESAWSKAALPAMLIGL 65
Query 68 FVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFG 127
FVAGVV+ ++ + P VL T L AA H++ L +V ++ +
Sbjct 66 FVAGVVMGTLTGQIARDRRPSAVLVLVTMLLCIAAIC-------HDAGLSYVAVMCMALA 118
Query 128 IGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAG 165
+GA NT F ++GEV++ L+Y+TGTLVK+GQ + L G
Sbjct 119 MGAENTVFERNGEVTIGLTYMTGTLVKLGQRVTAALLG 156
>gi|325675418|ref|ZP_08155102.1| hypothetical protein HMPREF0724_12884 [Rhodococcus equi ATCC
33707]
gi|325553389|gb|EGD23067.1| hypothetical protein HMPREF0724_12884 [Rhodococcus equi ATCC
33707]
Length=218
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/181 (38%), Positives = 99/181 (55%), Gaps = 7/181 (3%)
Query 8 GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILF 67
G A ++ L+ALAG + A F GYFV+FM+GNS + + L ++T + +++
Sbjct 8 GVAVVAVFLSALAGFVDAMGFITLGGYFVSFMSGNSTKLAVSLGEGLVGTALTGAGIVVL 67
Query 68 FVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFG 127
FV GV+ S R +H L L AA ++ G V I +V
Sbjct 68 FVIGVMAGSFTGRTAGRSHRQAVLTLVAVLLALAATAHLVGG-------TPVAIALMVLA 120
Query 128 IGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAA 187
+GA N +F ++GEVS+ L+Y+TGTLVKMGQ + L GG+ W+ +FLL A+ V+GAA
Sbjct 121 MGAENATFEREGEVSISLTYMTGTLVKMGQRLVTALTGGERWGWVRHFLLWAAMVIGAAL 180
Query 188 G 188
G
Sbjct 181 G 181
>gi|312140944|ref|YP_004008280.1| integral membrane protein [Rhodococcus equi 103S]
gi|311890283|emb|CBH49601.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=218
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/181 (38%), Positives = 99/181 (55%), Gaps = 7/181 (3%)
Query 8 GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILF 67
G A ++ L+ALAG + A F GYFV+FM+GNS + + L ++T + +++
Sbjct 8 GVAVVAVFLSALAGFVDAMGFITLGGYFVSFMSGNSTKLAVSLGEGLVGTALTGAGIVVL 67
Query 68 FVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFG 127
FV GV+ S R +H L L AA ++ G V I +V
Sbjct 68 FVIGVMAGSFTGRTAGRSHRQAVLTLVAVLLALAATAHLVGG-------TPVAIALMVLA 120
Query 128 IGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAA 187
+GA N +F ++GEVS+ L+Y+TGTLVKMGQ + L GG+ W+ +FLL A+ V+GAA
Sbjct 121 MGAENATFEREGEVSISLTYMTGTLVKMGQRLVTALTGGERWGWVRHFLLWAAMVIGAAL 180
Query 188 G 188
G
Sbjct 181 G 181
>gi|300781532|ref|ZP_07091386.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533239|gb|EFK54300.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=225
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/197 (35%), Positives = 99/197 (51%), Gaps = 30/197 (15%)
Query 7 DGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAW--MSVTASLL 64
+ E L+ L+++ G + F + GYF++FM+GN+ R + + W +T S++
Sbjct 6 NAERALAIYLSSITGFVDTIGFMYLGGYFLSFMSGNTTRLTAAM-SERRWEVAGLTGSIM 64
Query 65 ILFFV---AGVVIASVCRRHFWAAHPHGPT---------VLTTFSLIFAAGVDIMLGGWH 112
I F V G I+ + RR PH T + +TF+ I VD L +
Sbjct 65 ITFLVGVGVGAAISQLGRRML----PHTRTREAVLLFICLTSTFASILIT-VDAQLAAMY 119
Query 113 ESMLDFVPILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWL 172
ML F +GA+N++F +DGEVS+ L+Y+TGTLVKM Q L G + WL
Sbjct 120 --MLSFT--------VGAMNSTFERDGEVSIALTYMTGTLVKMSQRFVGALFGDPHKHWL 169
Query 173 GYFLLHASFVLGAAAGG 189
G+F L AS GA GG
Sbjct 170 GHFALWASLACGALLGG 186
>gi|326386211|ref|ZP_08207835.1| hypothetical protein Y88_2103 [Novosphingobium nitrogenifigens
DSM 19370]
gi|326209436|gb|EGD60229.1| hypothetical protein Y88_2103 [Novosphingobium nitrogenifigens
DSM 19370]
Length=212
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/184 (35%), Positives = 93/184 (51%), Gaps = 9/184 (4%)
Query 6 YD-GEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLL 64
YD R + LAALAG + A F + GYFV+FM+GN+ R + L G ++ +LL
Sbjct 4 YDRARRRFAVTLAALAGFVDAVGFLSANGYFVSFMSGNTTRLGVAL-GTAPSRALAPALL 62
Query 65 ILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFV 124
I F+ GV ++ A P + +L+ G G ML +
Sbjct 63 IGAFLCGVTGGALV--ALGAGRWRKPAITAMVALVLLCGASARAFGTEIVMLGLL----- 115
Query 125 VFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLG 184
F +GA+N +F + GEV++ L+Y+TG LVK+GQG+ LAG W G+ L A + G
Sbjct 116 AFAMGAINNTFQRGGEVAIGLTYMTGALVKLGQGMALRLAGRDSPGWTGWARLWAGLLSG 175
Query 185 AAAG 188
A AG
Sbjct 176 AIAG 179
>gi|336325583|ref|YP_004605549.1| hypothetical protein CRES_1029 [Corynebacterium resistens DSM
45100]
gi|336101565|gb|AEI09385.1| putative membrane protein [Corynebacterium resistens DSM 45100]
Length=225
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/185 (34%), Positives = 92/185 (50%), Gaps = 2/185 (1%)
Query 4 EIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASL 63
E GE L+ V +AG + + F G F++FM+GN+ R+ L + + + A
Sbjct 3 EYRPGERLLALVFTFVAGFIDSVGFIFLGGVFLSFMSGNTTRSATALVDGNHELMLLAGS 62
Query 64 LILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
I+ FV GV++ ++ RR G T + L A + + L V ++
Sbjct 63 CIVLFVIGVMLGALVRR--LITRSRGLTFAREYVLALIAALLVAASLLIFCDLARVGVIV 120
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVL 183
V IGA+N+ F + GEVS+PL+Y+TGTLVKMGQ G+ WL + L S L
Sbjct 121 VSVAIGAMNSIFERKGEVSIPLTYMTGTLVKMGQRFVDAFFDGRHVFWLAHLALWTSLSL 180
Query 184 GAAAG 188
GA AG
Sbjct 181 GAIAG 185
>gi|226363527|ref|YP_002781309.1| hypothetical protein ROP_41170 [Rhodococcus opacus B4]
gi|226242016|dbj|BAH52364.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=227
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/227 (36%), Positives = 110/227 (49%), Gaps = 23/227 (10%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWM-SVTASLLILFFVA 70
L+ VL+ALAG + A F G+FV FM+GN R + F D W ++TA+ +I FV
Sbjct 15 LAVVLSALAGYVDALGFITLGGFFVAFMSGNLTRFSVD-FADGTWAPALTAAAVIGTFVL 73
Query 71 GVVIASVC-----RRHFWAAHPHGPTVLTTFS-LIFAAGVDIMLGGWHESMLDFVPILFV 124
G + +V R P TVL S L+ A V G V + +
Sbjct 74 GCALGAVVVHLSDRTRL----PARTTVLAVVSGLLIAGAVAATFGA------STVAVGAM 123
Query 125 VFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLG 184
+ +GA N+ F KDGEV++ L+Y+TG LVKMG + L GG WL + L A V G
Sbjct 124 LLAMGAENSFFQKDGEVTIGLTYMTGALVKMGHRLAAALFGGPRWAWLRHLALWAGLVTG 183
Query 185 AAAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQ 231
A GA++ G L AA + AA T +L DR +RPQ
Sbjct 184 AVT-GALAHRWIGLDALWFAAALSAALTVTVHLRIDR----ATRRPQ 225
>gi|111021167|ref|YP_704139.1| hypothetical protein RHA1_ro04188 [Rhodococcus jostii RHA1]
gi|110820697|gb|ABG95981.1| possible membrane protein [Rhodococcus jostii RHA1]
Length=227
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/226 (35%), Positives = 110/226 (49%), Gaps = 21/226 (9%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAG 71
L+ VL+ LAG + A F G+FV FM+GN R +G + TA+ +I FV G
Sbjct 15 LAVVLSTLAGYVDALGFITLGGFFVAFMSGNLTRFSVGFADAAWAHAATAAAVIGMFVLG 74
Query 72 VVIASVC-----RRHFWAAHPHGPTVLTTFS-LIFAAGVDIMLGGWHESMLDFVPILFVV 125
+ +V RR P TVL S L+ V +G V + ++
Sbjct 75 CALGAVVVHLSDRRRL----PVRTTVLAVVSGLLIVGAVAATVGA------STVAVGAML 124
Query 126 FGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGA 185
+GA N+ F +DGEV++ L+Y+TG LVKMG + L GG WL +F L A V+GA
Sbjct 125 LAMGAENSFFQRDGEVTIGLTYMTGALVKMGHRLAGALFGGPRWAWLRHFALWAGLVVGA 184
Query 186 AAGGAISMVVTGPQMLAVAAVVCAATTGYTYLHADRRGLVNQKRPQ 231
GA++ G L AAV+ AA T +L DR +RPQ
Sbjct 185 VT-GALAHHWIGLDALWFAAVLSAALTVTVHLRIDR----ATRRPQ 225
>gi|334346089|ref|YP_004554641.1| hypothetical protein Sphch_2481 [Sphingobium chlorophenolicum
L-1]
gi|334102711|gb|AEG50135.1| protein of unknown function DUF1275 [Sphingobium chlorophenolicum
L-1]
Length=213
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/171 (37%), Positives = 89/171 (53%), Gaps = 13/171 (7%)
Query 21 GILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVIASVCRR 80
G + A F S G FV+FM+GNS R +G A+L++LF V GV++ +
Sbjct 20 GFVDAMGFLTSGGLFVSFMSGNSTRLAIGAAQSATAALAAAALIVLF-VTGVILNLLVVD 78
Query 81 HFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPIL---FVVFGIGALNTSFVK 137
F AH ++ L+ AA + +S LD VP+L + +GALNT F +
Sbjct 79 RFAFAHRKVIAMMGVCILLIAAAI-------FQS-LD-VPLLTIGLLCMAMGALNTIFRR 129
Query 138 DGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAG 188
+GEVS+ L+Y+TGTLVK+G + + GG W Y LL S + G AG
Sbjct 130 EGEVSIGLTYMTGTLVKLGYRLAEAVRGGDRTGWQPYLLLWLSLICGGIAG 180
>gi|302381851|ref|YP_003817674.1| hypothetical protein Bresu_0736 [Brevundimonas subvibrioides
ATCC 15264]
gi|302192479|gb|ADL00051.1| protein of unknown function DUF1275 [Brevundimonas subvibrioides
ATCC 15264]
Length=216
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/174 (35%), Positives = 96/174 (56%), Gaps = 11/174 (6%)
Query 6 YDGEAR-LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLL 64
YD R L+ + +AG + A F + G+FV+FM+GNS R +GL + + +V A+ L
Sbjct 4 YDRRIRVLAACFSGVAGYVDAIGFLMTGGFFVSFMSGNSTRLGIGL-AEGSPSTVFAAAL 62
Query 65 ILFFVAGVVIASVCRRHFWAAHPHG-PTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILF 123
++ FV GV++ +V R A H P VL + + A+ V L + +P+
Sbjct 63 LVTFVVGVMLGTVVGR---IARTHRRPAVLALVTGLLASAVA--LHALGAGVFVAIPM-- 115
Query 124 VVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLL 177
V +GA NT F +DGEV + L+Y++GTLVK+G+ + L GG W+ + +L
Sbjct 116 -VLAMGAENTVFAEDGEVRIGLTYMSGTLVKLGKRLTAALLGGDRFGWVPFLML 168
>gi|90420229|ref|ZP_01228137.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1]
gi|90335563|gb|EAS49313.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1]
Length=222
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/188 (35%), Positives = 92/188 (49%), Gaps = 12/188 (6%)
Query 21 GILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVIASVCRR 80
G + A F G FV+FM+GNS R +G+ + + ++ A ++ FV GVV S+
Sbjct 20 GYVDAIGFLKLGGLFVSFMSGNSTRLAVGV-AELSGIAGLALAIVAAFVGGVVAGSLTAH 78
Query 81 HFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTSFVKDGE 140
A + L AAG+D +G + S L + +G +N F ++GE
Sbjct 79 RAGTARKAAVLIQVAVLLAVAAGLDATVGRPYAS-------LTLAAAMGTVNCVFQRNGE 131
Query 141 VSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFL----LHASFVLGAAAGGAISMVVT 196
VS+ +SY+TGTLVK+GQ I GGK W+ Y L L A LGA A GA V
Sbjct 132 VSIGVSYMTGTLVKLGQHIANACLGGKRFGWVPYILLWTGLLAGATLGALAHGAFEAVSL 191
Query 197 GPQMLAVA 204
P +L A
Sbjct 192 VPAVLVAA 199
>gi|226309187|ref|YP_002769147.1| hypothetical protein RER_57000 [Rhodococcus erythropolis PR4]
gi|226188304|dbj|BAH36408.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=221
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/183 (35%), Positives = 95/183 (52%), Gaps = 15/183 (8%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSV-TASLLILFFVA 70
L+ LA LAG + A F G FV+FM+GN +A + F D W + A +I+ F+
Sbjct 11 LATALAGLAGYVDALGFITLGGPFVSFMSGNMTQASVA-FADGVWSTARVAGGIIVLFLL 69
Query 71 GVVIASVCRRHF---WAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP--ILFVV 125
G+ + +V HF ++ TVL + + A G +M S LD P I +
Sbjct 70 GIALGTVVT-HFTERYSVRTRKVTVLAVVAGLLAIG-SVM------SSLDVTPGAISAMA 121
Query 126 FGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGA 185
+GA+N+ F +DGEV++ ++Y+TG LVKMGQ + GG WL +F + A + GA
Sbjct 122 LAMGAVNSVFQRDGEVTIGVTYMTGALVKMGQRLTGAFLGGPKWAWLQHFGMCAGLIAGA 181
Query 186 AAG 188
G
Sbjct 182 VVG 184
>gi|167646503|ref|YP_001684166.1| hypothetical protein Caul_2541 [Caulobacter sp. K31]
gi|167348933|gb|ABZ71668.1| protein of unknown function DUF1275 [Caulobacter sp. K31]
Length=214
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/194 (36%), Positives = 92/194 (48%), Gaps = 9/194 (4%)
Query 16 LAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSV-TASLLILFFVAGVVI 74
L+A+AG + A F G+FV+FM+GNS R +G+ W +V T +L+ FVAGVV
Sbjct 15 LSAVAGYVDAIGFLKLGGFFVSFMSGNSTRLGVGV-ATGRWETVRTVVILVGLFVAGVVA 73
Query 75 ASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTS 134
++ R + +L+ I G D I +V +GA N
Sbjct 74 GALVARRV-GEGRRSAVLTLEAALLALGAGLITAG------FDTAGIGAIVLAMGAENAV 126
Query 135 FVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMV 194
F +DG+V V L+Y+TG LVK GQ I L GG W Y LL A LG A G A +
Sbjct 127 FQRDGDVGVGLTYMTGALVKAGQRIAAALTGGDRWAWGPYALLWAGLTLGGALGAAAYLR 186
Query 195 VTGPQMLAVAAVVC 208
+ A A VV
Sbjct 187 FGVAALWAAAGVVA 200
>gi|229491801|ref|ZP_04385622.1| putative membrane protein [Rhodococcus erythropolis SK121]
gi|229321482|gb|EEN87282.1| putative membrane protein [Rhodococcus erythropolis SK121]
Length=221
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/183 (34%), Positives = 95/183 (52%), Gaps = 15/183 (8%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSV-TASLLILFFVA 70
L+ LA LAG + A F G FV+FM+GN +A + F D W + A +I+ F+
Sbjct 11 LATALAGLAGYVDALGFITLGGPFVSFMSGNMTQASVA-FADGVWSTARVAGGIIVLFLL 69
Query 71 GVVIASVCRRHF---WAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVP--ILFVV 125
G+ + +V HF ++ TVL + + + G +M S LD P I +
Sbjct 70 GIALGTVVT-HFTERYSVRARKVTVLAVVAGLLSIG-SVM------SSLDVTPGAISAMA 121
Query 126 FGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGA 185
+GA+N+ F +DGEV++ ++Y+TG LVKMGQ + GG WL +F + A + GA
Sbjct 122 LAMGAVNSVFQRDGEVTIGVTYMTGALVKMGQRLTGAFLGGPKWAWLQHFGMCAGLIAGA 181
Query 186 AAG 188
G
Sbjct 182 VVG 184
>gi|332185386|ref|ZP_08387134.1| hypothetical protein SUS17_455 [Sphingomonas sp. S17]
gi|332014364|gb|EGI56421.1| hypothetical protein SUS17_455 [Sphingomonas sp. S17]
Length=210
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/184 (38%), Positives = 91/184 (50%), Gaps = 18/184 (9%)
Query 11 RLSWVLAA----LAGILGATAFTHSAGYFVTFMTGNSQRAVLGLF--GDDAWMSVTASLL 64
R SW LA LAG + A F GYFV+FM+GN LGL G A + L
Sbjct 6 RRSWPLAIGLSLLAGYVDAIGFQRLGGYFVSFMSGNGTMLALGLVAPGGAAHGVALLAAL 65
Query 65 ILFFVAGVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFV 124
+ FV GV++ ++ R A VL L AA V GW L +
Sbjct 66 LALFVVGVMLGTLIRLILPRAGQPVVLVLVAMLLAGAAAVQ----GWAG--------LLM 113
Query 125 VFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLG 184
+GA N +F +DGEVS+ ++Y+TGTLVK+GQ + R +AG W+ Y LL FV G
Sbjct 114 AVAMGAANATFERDGEVSIGVTYMTGTLVKIGQHLARMVAGRTRWAWVPYLLLWIGFVAG 173
Query 185 AAAG 188
A+ G
Sbjct 174 ASLG 177
>gi|169630488|ref|YP_001704137.1| hypothetical protein MAB_3407 [Mycobacterium abscessus ATCC 19977]
gi|169242455|emb|CAM63483.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=220
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/175 (33%), Positives = 82/175 (47%), Gaps = 7/175 (4%)
Query 16 LAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVIA 75
L+ +AG L A F H GYF++FM+GN+ R + + A+ LI F GV+I
Sbjct 15 LSTVAGFLDAIGFVHLGGYFLSFMSGNTTRMAASTATLNWESAYKAAGLIGMFFIGVMIG 74
Query 76 SVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTSF 135
++ R + H + + A I ES +L +GA+N+ F
Sbjct 75 AIASR---VSGEHERIAVLAVASTTVAAAAIT----QESGAGVAALLVTSLAMGAMNSVF 127
Query 136 VKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGA 190
+ GEV V L+Y+TGT+VK GQ + GG WL Y L A +GA G A
Sbjct 128 QRSGEVQVGLTYITGTVVKAGQRLVDAFFGGPRWVWLRYITLWAGLTVGAVLGAA 182
>gi|172040718|ref|YP_001800432.1| hypothetical protein cur_1038 [Corynebacterium urealyticum DSM
7109]
gi|171852022|emb|CAQ04998.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length=225
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/226 (30%), Positives = 106/226 (47%), Gaps = 10/226 (4%)
Query 4 EIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASL 63
E GE L+ V A +AG + + F + G F++FM+GN+ R+ + + M A
Sbjct 3 ESRPGERVLAGVFAFIAGFIDSVGFLYLGGVFLSFMSGNTTRSATAIVDGNWDMVKVAGG 62
Query 64 LILFFVAGVVIASVCRRHFWAAHPHG---PTVLTTFSLIFAAGVDIMLGGWHESMLDFVP 120
ILFF+ GV+ + +R A VL S F +++ H
Sbjct 63 CILFFLLGVINGAFTKRIVVRALDETRGREFVLVNVSFWFILS-SVLIELEHHG----AA 117
Query 121 ILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHAS 180
I+ + G+G +N+ F ++GEV++PL+Y+TGTLV+ GQ G+ W+ L S
Sbjct 118 IIALSIGVGTMNSIFERNGEVAIPLTYMTGTLVRTGQRFVDAFFDGRHLVWILNLSLWLS 177
Query 181 FVLGAAAGG-AISMV-VTGPQMLAVAAVVCAATTGYTYLHADRRGL 224
+GA AG A M+ + ++L + +V A H R GL
Sbjct 178 LSVGAIAGAVAYHMLGIHAIELLTLITLVTVAINQLVREHRRRAGL 223
>gi|146342785|ref|YP_001207833.1| hypothetical protein BRADO5962 [Bradyrhizobium sp. ORS 278]
gi|146195591|emb|CAL79618.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium
sp. ORS 278]
Length=213
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/171 (34%), Positives = 85/171 (50%), Gaps = 13/171 (7%)
Query 21 GILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASL-LILFFVAGVVIASVC- 78
G + F H G FV+FM+GNS R + L + W +++L LI FV G + S+
Sbjct 19 GYIDGIGFLHLGGLFVSFMSGNSTRMGVSL-AEGRWSEASSALGLIGLFVGGAAVGSLIM 77
Query 79 -RRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTSFVK 137
RR+ H ++ +L+ AA + H + + F + +V +G N +F
Sbjct 78 QRRN---RHVQSLLLMVEGALLIAATLC------HLATVPFGAVAAIVLAMGLENAAFQI 128
Query 138 DGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAG 188
G + L+YVTG LVK+GQ + LAGG WL LL A+ V G+ AG
Sbjct 129 KGSGGLGLTYVTGALVKVGQAVAVALAGGPRLGWLSNLLLWAALVAGSVAG 179
>gi|296284806|ref|ZP_06862804.1| hypothetical protein CbatJ_14356 [Citromicrobium bathyomarinum
JL354]
Length=213
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/181 (34%), Positives = 90/181 (50%), Gaps = 8/181 (4%)
Query 13 SWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGV 72
++ +A LAG + T + GYFV+FMTGN+ L + ++V A LLI FV GV
Sbjct 12 AYAVAGLAGFVDVTGYLQLNGYFVSFMTGNTTLLARDLAEGASRVAVPA-LLIAGFVIGV 70
Query 73 VIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALN 132
V ++ + T L LI AA L E + + + +V +GALN
Sbjct 71 VTGTLVGDRVASRRKVVVTGLVATLLICAA-----LARMAE--MREISLGLLVIAMGALN 123
Query 133 TSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAIS 192
T + E V L+Y+TG LV+ GQ + ++G + D L + LL S + GA GG ++
Sbjct 124 TVLSANRESPVGLTYMTGALVRTGQLLADRISGDRTADPLPFALLWVSLLTGALCGGVLA 183
Query 193 M 193
M
Sbjct 184 M 184
>gi|103487188|ref|YP_616749.1| hypothetical protein Sala_1703 [Sphingopyxis alaskensis RB2256]
gi|98977265|gb|ABF53416.1| protein of unknown function DUF1275 [Sphingopyxis alaskensis
RB2256]
Length=212
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/212 (34%), Positives = 104/212 (50%), Gaps = 12/212 (5%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAG 71
L+ ++ALAG + A F S G+FV+FMTGNS R +G+ + + + A +IL FVAG
Sbjct 11 LAAAISALAGFVDAIGFVESGGFFVSFMTGNSTRLAVGV-AEWSHAGLVAGAIILLFVAG 69
Query 72 VVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGAL 131
VV S+ A G +L +L+ AAG G + + + +G +
Sbjct 70 VVAGSLAAARA-ARQRSGVILLFVATLLAAAG------GLRLADQVVAAVACLAVAMGMV 122
Query 132 NTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAI 191
N + G V ++Y+TGTLV+MGQ + L G WL + L ++ V GA G
Sbjct 123 NAAVEGRGGAVVGVTYMTGTLVQMGQKMANALRGTGDGRWLPHLALWSALVAGAIVG--- 179
Query 192 SMVVTGPQMLAVA-AVVCAATTGYTYLHADRR 222
+ V G + A A A V AA G + A RR
Sbjct 180 ARVTIGSPLAAYALATVGAAALGGRAIWAMRR 211
>gi|341613814|ref|ZP_08700683.1| hypothetical protein CJLT1_02637 [Citromicrobium sp. JLT1363]
Length=215
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/197 (31%), Positives = 93/197 (48%), Gaps = 21/197 (10%)
Query 4 EIYDGEARL-SWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTAS 62
+ + + RL ++ +AALAG + T F GYFV+FMTGN+ L G + ++V A
Sbjct 2 QRFTPQQRLFAYAVAALAGFVDVTGFLQVDGYFVSFMTGNTTLLARDLAGGASRVAVPA- 60
Query 63 LLILFFVAGVVIASVC------RRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESML 116
LLI FV GVV ++ RR ++ F +I LG
Sbjct 61 LLIAGFVIGVVTGTLVGDRLASRRKVVVTALVAALLVCAALARFVELREISLG------- 113
Query 117 DFVPILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFL 176
+V +GALNT+ + E V L+Y+TG LV+ GQ + +AG + + L + L
Sbjct 114 ------LLVVAMGALNTALSANRESPVGLTYMTGALVRTGQLLADRIAGDRKANPLPFAL 167
Query 177 LHASFVLGAAAGGAISM 193
L S + GA G + +
Sbjct 168 LWLSLLAGALGGAVVGL 184
>gi|326381363|ref|ZP_08203057.1| hypothetical protein SCNU_00390 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199610|gb|EGD56790.1| hypothetical protein SCNU_00390 [Gordonia neofelifaecis NRRL
B-59395]
Length=242
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/215 (32%), Positives = 97/215 (46%), Gaps = 22/215 (10%)
Query 2 QREIYDGEARLSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGL-FGDDAWMSVT 60
R + E L+ L+ +AG L A F G FV+FM+GN+ L G +
Sbjct 1 MRSAHRREVGLAVGLSCIAGYLDAVGFLELRGRFVSFMSGNTTELATQLGMGRFSGAGTV 60
Query 61 ASLLILFFVAGVVIASVCR----RHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESML 116
A+LL +F V V+ A R R A +T F+ +F ++ G +M
Sbjct 61 AALLGMFVVGAVIGAVAARIGDGRTTVLAVTTVLLAMTAFASLFVTPSTVITIGLPAAM- 119
Query 117 DFVPILFVVFGIGALNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFL 176
GA+N++F+ GEVS+ L+Y+TGTLVK GQ + AGG WL
Sbjct 120 ------------GAMNSTFLSRGEVSIGLTYMTGTLVKAGQQLVEAFAGGPRFLWLRNLT 167
Query 177 LHASFVLGAAAGGAISMVVTGPQM---LAVAAVVC 208
L + G GA+S TGP +AVA +V
Sbjct 168 LWLALAAGGLI-GALSHRATGPTTATWIAVAVMVV 201
>gi|334139631|ref|YP_004532825.1| hypothetical protein PP1Y_AT297 [Novosphingobium sp. PP1Y]
gi|333937649|emb|CCA91007.1| conserved hypothetical protein [Novosphingobium sp. PP1Y]
Length=215
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 78/149 (53%), Gaps = 16/149 (10%)
Query 21 GILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAGVVIASVCRR 80
G + A F + YFV+FM+GN+ R L + ++ +LLIL FV GV + ++
Sbjct 20 GYVDAVGFLSADRYFVSFMSGNTTRLATDLIAEGPHRALVPALLILGFVLGVAMGNIV-- 77
Query 81 HFWAAHPHG----PTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTSFV 136
AH G P VL+ + + A + L + E+M+ +VF +GALN +
Sbjct 78 ----AHKAGRWRKPAVLSLVTALLALAALLALSEYLEAMMA-----MLVFAMGALNNTMQ 128
Query 137 KDGEVSVPLSYVTGTLVKMGQGIERHLAG 165
++ E V L+Y+TG LV++GQG+ L G
Sbjct 129 RN-ETPVALTYLTGALVRIGQGLGGMLTG 156
>gi|148550709|ref|YP_001260148.1| hypothetical protein Swit_5273 [Sphingomonas wittichii RW1]
gi|148503128|gb|ABQ71381.1| protein of unknown function DUF1275 [Sphingomonas wittichii RW1]
Length=243
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/163 (35%), Positives = 86/163 (53%), Gaps = 8/163 (4%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFVAG 71
L+ +ALAG + A F + G+FV+FM+GNS R +GL + ++TA LI FV G
Sbjct 33 LAACFSALAGFVDALGFLYLGGFFVSFMSGNSTRLAVGL-SEHVADALTAGGLIASFVVG 91
Query 72 VVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGAL 131
V++ S+C R A HG + +++ AA + + + + +GA
Sbjct 92 VMLGSLCGRTIRRAR-HGALMYLIAAMLTAASLLA------AADATWAAAAVLAMAMGAE 144
Query 132 NTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGY 174
N F DGEV + L+Y+TGTLVK+GQ + L GG W+ Y
Sbjct 145 NALFEHDGEVQIGLTYMTGTLVKLGQRLLSALMGGDRFGWVPY 187
>gi|319947729|ref|ZP_08021936.1| hypothetical protein ES5_00430 [Dietzia cinnamea P4]
gi|319438606|gb|EFV93519.1| hypothetical protein ES5_00430 [Dietzia cinnamea P4]
Length=213
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/178 (33%), Positives = 84/178 (48%), Gaps = 4/178 (2%)
Query 12 LSWVLAALAGILGATAFTHSAGYFVTFMTGNSQRAVLGLF-GDDAWMSVTASLLILFFVA 70
L+ VLA AG + A F GYFV+FM+GNS R V+ L GD + A +L+ FF
Sbjct 2 LAVVLAGTAGFVDAVGFLVVGGYFVSFMSGNSTRMVVSLADGDLGAAGIAAVVLVSFFTG 61
Query 71 GVVIASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGA 130
V A V RR P T++ + + E + + + +GA
Sbjct 62 AVAGAVVTRRRNLDDRPAVLTLVAVLLVAALVAQRLTT---VEVLAVPLSVAVAATAMGA 118
Query 131 LNTSFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAG 188
+N+ F GEVS+ ++Y+TG +VK + LAGG + L ++ VLG AG
Sbjct 119 MNSVFHSGGEVSLGVTYMTGAVVKSAHRLVDALAGGSWAPYRQQVALWSALVLGGVAG 176
>gi|209551622|ref|YP_002283539.1| hypothetical protein Rleg2_4051 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537378|gb|ACI57313.1| protein of unknown function DUF1275 [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length=240
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/230 (33%), Positives = 105/230 (46%), Gaps = 31/230 (13%)
Query 19 LAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFV----AGVVI 74
LAG+ AT + G FV+FMTGN+ RA L L + + + IL FV AG+VI
Sbjct 28 LAGMTDATGLLLT-GDFVSFMTGNTTRAALALSDGNLYHAAVLISAILVFVLGNAAGIVI 86
Query 75 ASVCRRHFWAAHPHGPTVLTTFSLIFA-AGVDIMLGGWHESMLDFVPILFVVFGIGALNT 133
A V R + VL L+ A A V M G L +VF +G +N
Sbjct 87 AHVSERRIF-------VVLGCVGLVLALASVTTMQG------LLLARFYMIVFAMGMVNA 133
Query 134 SFVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISM 193
+ + + L+YVTG L ++G+GI R + G + W + VLGA AG ++
Sbjct 134 AVEHIEGLPIGLTYVTGALSRLGRGIGRWIIGDRHIGWTIQIVPWGGMVLGAIAGAVLTR 193
Query 194 VVTGPQ---MLAVAAVVCAATTGYTYLHADRRGLVNQK----RP--QPGK 234
+TG M+++ A+V A + RR NQK RP P K
Sbjct 194 -LTGAHALWMVSLFAMVLALAAMFIPRPLQRR--FNQKIAPHRPAVAPAK 240
>gi|116249877|ref|YP_765715.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254525|emb|CAK05599.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length=240
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/228 (30%), Positives = 107/228 (47%), Gaps = 23/228 (10%)
Query 19 LAGILGATAFTHSAGYFVTFMTGNSQRAVLGLFGDDAWMSVTASLLILFFV----AGVVI 74
LAG+ AT + G FV+FMTGN+ RA L L + + + I+ FV AG+VI
Sbjct 28 LAGMTDATGLLLT-GDFVSFMTGNTTRAALALSEGNLYHAAVLICAIVVFVLGNAAGIVI 86
Query 75 ASVCRRHFWAAHPHGPTVLTTFSLIFAAGVDIMLGGWHESMLDFVPILFVVFGIGALNTS 134
+ + +R + VL L+ A + + ++ML F +VF +G +N +
Sbjct 87 SHISQRRIF-------VVLGCVGLVLALASMMTV----QNML-FARFYMIVFSMGMVNAA 134
Query 135 FVKDGEVSVPLSYVTGTLVKMGQGIERHLAGGKVEDWLGYFLLHASFVLGAAAGGAISMV 194
+ + L+YVTG L + G+GI R + G + +W + VLGA AG ++
Sbjct 135 VEHIEGLPIGLTYVTGALSRFGRGIGRWIIGDRRVEWTIQIVPWGGMVLGAIAGAVLTR- 193
Query 195 VTGPQ---MLAVAAVVCAATTGYTYLHADRRGLVNQKRPQPGKRLFRA 239
+TG ++++ A+V A RR NQK G + RA
Sbjct 194 LTGAHALWLVSLFAMVLALAAMLIPRPLQRR--FNQKVAPSGSAITRA 239
Lambda K H
0.325 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 382276364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40