BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0135c
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607277|ref|NP_214649.1| transcriptional regulatory protein ... 402 2e-110
gi|340625170|ref|YP_004743622.1| putative transcriptional regula... 401 3e-110
gi|289572714|ref|ZP_06452941.1| transcriptional regulator [Mycob... 400 8e-110
gi|240168136|ref|ZP_04746795.1| putative transcriptional regulat... 323 1e-86
gi|183980376|ref|YP_001848667.1| transcriptional regulatory prot... 308 3e-82
gi|118619831|ref|YP_908163.1| transcriptional regulatory protein... 306 8e-82
gi|336459911|gb|EGO38823.1| transcriptional regulator [Mycobacte... 305 3e-81
gi|41409650|ref|NP_962486.1| hypothetical protein MAP3552c [Myco... 304 5e-81
gi|254822372|ref|ZP_05227373.1| transcriptional regulator, TetR ... 301 3e-80
gi|342859435|ref|ZP_08716089.1| TetR family transcriptional regu... 300 6e-80
gi|296167325|ref|ZP_06849727.1| TetR family transcriptional regu... 294 6e-78
gi|333988718|ref|YP_004521332.1| transcriptional regulator [Myco... 282 2e-74
gi|126438036|ref|YP_001073727.1| TetR family transcriptional reg... 252 2e-65
gi|108802057|ref|YP_642254.1| TetR family transcriptional regula... 252 2e-65
gi|119871209|ref|YP_941161.1| TetR family transcriptional regula... 251 3e-65
gi|118470743|ref|YP_890692.1| transcriptional regulatory protein... 244 4e-63
gi|145221695|ref|YP_001132373.1| TetR family transcriptional reg... 217 6e-55
gi|315446567|ref|YP_004079446.1| TetR family transcriptional reg... 211 3e-53
gi|120406655|ref|YP_956484.1| TetR family transcriptional regula... 201 4e-50
gi|300786377|ref|YP_003766668.1| TetR family transcriptional reg... 194 7e-48
gi|145222266|ref|YP_001132944.1| TetR family transcriptional reg... 193 1e-47
gi|326381928|ref|ZP_08203621.1| regulatory protein TetR [Gordoni... 188 3e-46
gi|120406027|ref|YP_955856.1| TetR family transcriptional regula... 187 1e-45
gi|108801470|ref|YP_641667.1| TetR family transcriptional regula... 183 1e-44
gi|126437455|ref|YP_001073146.1| TetR family transcriptional reg... 183 2e-44
gi|296165651|ref|ZP_06848173.1| TetR family transcriptional regu... 175 4e-42
gi|262203252|ref|YP_003274460.1| TetR family transcriptional reg... 174 6e-42
gi|343924793|ref|ZP_08764332.1| putative TetR family transcripti... 169 2e-40
gi|54024143|ref|YP_118385.1| putative transcriptional regulator ... 162 2e-38
gi|256376760|ref|YP_003100420.1| TetR family transcriptional reg... 158 4e-37
gi|317506532|ref|ZP_07964329.1| tetR family bacterial regulatory... 148 4e-34
gi|284041824|ref|YP_003392164.1| TetR family transcriptional reg... 147 7e-34
gi|296394364|ref|YP_003659248.1| TetR family transcriptional reg... 136 1e-30
gi|159899040|ref|YP_001545287.1| TetR family transcriptional reg... 108 4e-22
gi|262195072|ref|YP_003266281.1| TetR family transcriptional reg... 107 1e-21
gi|302529355|ref|ZP_07281697.1| hypothetical protein SSMG_05737 ... 102 2e-20
gi|171058597|ref|YP_001790946.1| TetR family transcriptional reg... 98.6 4e-19
gi|319793206|ref|YP_004154846.1| TetR family transcriptional reg... 96.7 2e-18
gi|284046020|ref|YP_003396360.1| TetR family transcriptional reg... 95.1 5e-18
gi|84497441|ref|ZP_00996263.1| possible transcriptional regulato... 93.2 2e-17
gi|337279952|ref|YP_004619424.1| TetR family transcriptional reg... 90.1 2e-16
gi|239815338|ref|YP_002944248.1| TetR family transcriptional reg... 89.4 3e-16
gi|271966249|ref|YP_003340445.1| TetR family transcriptional reg... 80.5 1e-13
gi|284044621|ref|YP_003394961.1| TetR family transcriptional reg... 73.2 2e-11
gi|284044606|ref|YP_003394946.1| TetR family transcriptional reg... 72.4 4e-11
gi|284046286|ref|YP_003396626.1| TetR family transcriptional reg... 71.2 7e-11
gi|333921593|ref|YP_004495174.1| TetR family transcriptional reg... 67.4 1e-09
gi|54023111|ref|YP_117353.1| putative transcriptional regulator ... 66.6 2e-09
gi|256394333|ref|YP_003115897.1| TetR family transcriptional reg... 66.2 2e-09
gi|254447782|ref|ZP_05061247.1| putative transcriptional regulat... 65.5 5e-09
>gi|15607277|ref|NP_214649.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15839516|ref|NP_334553.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31791313|ref|NP_853806.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=201
Score = 402 bits (1032), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 200/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+TAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE
Sbjct 1 MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL
Sbjct 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ
Sbjct 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
Query 181 PIRNIVEPAVDASIALLGPRS 201
PIRNIVEPAVDASIALLGPRS
Sbjct 181 PIRNIVEPAVDASIALLGPRS 201
>gi|340625170|ref|YP_004743622.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340003360|emb|CCC42479.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=201
Score = 401 bits (1030), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 199/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+TAVAAGALVVETDSFRLRLLDGLVASIGERGYR+TTVSDIVRHARTSKRTFYDRFTSKE
Sbjct 1 MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRSTTVSDIVRHARTSKRTFYDRFTSKE 60
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL
Sbjct 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ
Sbjct 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
Query 181 PIRNIVEPAVDASIALLGPRS 201
PIRNIVEPAVDASIALLGPRS
Sbjct 181 PIRNIVEPAVDASIALLGPRS 201
>gi|289572714|ref|ZP_06452941.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|339630217|ref|YP_004721859.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|289537145|gb|EFD41723.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|339329573|emb|CCC25209.1| putative transcriptional regulatory protein [Mycobacterium africanum
GM041182]
Length=201
Score = 400 bits (1027), Expect = 8e-110, Method: Compositional matrix adjust.
Identities = 199/201 (99%), Positives = 200/201 (99%), Gaps = 0/201 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+TAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE
Sbjct 1 MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYV HIESRPAVTLSWIREFPSL
Sbjct 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVIHIESRPAVTLSWIREFPSL 120
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ
Sbjct 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
Query 181 PIRNIVEPAVDASIALLGPRS 201
PIRNIVEPAVDASIALLGPRS
Sbjct 181 PIRNIVEPAVDASIALLGPRS 201
>gi|240168136|ref|ZP_04746795.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=201
Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/201 (79%), Positives = 175/201 (88%), Gaps = 0/201 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+TAVA A E D FRLRL DGL A+IGERGYRATTV+D+VRHARTSKRTFYD+F SKE
Sbjct 1 MTAVAGNAAPAEIDPFRLRLFDGLAAAIGERGYRATTVADVVRHARTSKRTFYDQFASKE 60
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
QCFLELL AD E LG I AAVDP+ADWH QIRQAVEAYV HIESRPA+TLSWIRE PSL
Sbjct 61 QCFLELLRADVEKLGEKISAAVDPDADWHQQIRQAVEAYVGHIESRPAITLSWIRELPSL 120
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
GA A PVQRRG++ L++LLI+LSASPGFRRA LPPL VPL+VILLGGLRELTAL VEDG+
Sbjct 121 GAVARPVQRRGLQLLSTLLIDLSASPGFRRAGLPPLTVPLSVILLGGLRELTALAVEDGR 180
Query 181 PIRNIVEPAVDASIALLGPRS 201
P+R++ EPA+DASIALLGPRS
Sbjct 181 PVRDVAEPAIDASIALLGPRS 201
>gi|183980376|ref|YP_001848667.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183173702|gb|ACC38812.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=201
Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/200 (78%), Positives = 170/200 (85%), Gaps = 0/200 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+TA A+ +++D FR RLL+GLVASIGERGY ATTV+DIVRHARTSKRTFYDRF SKE
Sbjct 1 MTAAASSPAALDSDPFRQRLLEGLVASIGERGYHATTVADIVRHARTSKRTFYDRFESKE 60
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
QCFL+LL ADNE L IRAAVDP ADW QIRQAVEAYV+HIESR AVTLSWIREFPSL
Sbjct 61 QCFLDLLRADNERLAKRIRAAVDPEADWQAQIRQAVEAYVSHIESRLAVTLSWIREFPSL 120
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
G +YPVQR GM LTSLL+ELSASPGFRRA LP + LAVILLGGLRELTALTVEDG+
Sbjct 121 GPISYPVQRHGMNLLTSLLVELSASPGFRRAGLPAVPGALAVILLGGLRELTALTVEDGR 180
Query 181 PIRNIVEPAVDASIALLGPR 200
IR IVEPAVDASIAL+GPR
Sbjct 181 DIREIVEPAVDASIALVGPR 200
>gi|118619831|ref|YP_908163.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118571941|gb|ABL06692.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=201
Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 155/200 (78%), Positives = 170/200 (85%), Gaps = 0/200 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+TA A+ +++D FR RLL+GLVASIGERGY ATTV+DIVRHARTSKRTFYDRF SKE
Sbjct 1 MTAAASSPAALDSDPFRQRLLEGLVASIGERGYHATTVADIVRHARTSKRTFYDRFESKE 60
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
QCFL+LL ADNE L IRAAVDP ADW QIRQAVEAY++HIESR AVTLSWIREFPSL
Sbjct 61 QCFLDLLRADNERLAKRIRAAVDPEADWQAQIRQAVEAYLSHIESRLAVTLSWIREFPSL 120
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
G +YPVQR GM LTSLL+ELSASPGFRRA LP + LAVILLGGLRELTALTVEDG+
Sbjct 121 GPISYPVQRHGMNLLTSLLVELSASPGFRRAGLPAVPGALAVILLGGLRELTALTVEDGR 180
Query 181 PIRNIVEPAVDASIALLGPR 200
IR IVEPAVDASIAL+GPR
Sbjct 181 DIREIVEPAVDASIALVGPR 200
>gi|336459911|gb|EGO38823.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis
S397]
Length=205
Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/189 (79%), Positives = 163/189 (87%), Gaps = 0/189 (0%)
Query 12 ETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADN 71
E D FRLRLLDGL SIGERGYRA+TV+D+VR ARTSKRTFYD F KE+CFLELL D
Sbjct 16 EIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKEECFLELLAVDI 75
Query 72 ETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRG 131
E LG I A+VDP ADWH QIRQAVEAYV +IE+RPA+TLSWIRE PSLGAAA PVQRRG
Sbjct 76 EKLGAKIAASVDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSLGAAARPVQRRG 135
Query 132 MEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVD 191
++ LTSLLI+LSASPGFRRA LPPL PLAVILLGGLRELTAL VEDG+P+R IVEPAVD
Sbjct 136 LQLLTSLLIDLSASPGFRRAQLPPLTAPLAVILLGGLRELTALAVEDGKPVRGIVEPAVD 195
Query 192 ASIALLGPR 200
AS+ALLGPR
Sbjct 196 ASVALLGPR 204
>gi|41409650|ref|NP_962486.1| hypothetical protein MAP3552c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464126|ref|YP_884278.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|254777503|ref|ZP_05219019.1| transcriptional regulator, TetR family protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|41398482|gb|AAS06102.1| hypothetical protein MAP_3552c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165413|gb|ABK66310.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
Length=201
Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 149/189 (79%), Positives = 163/189 (87%), Gaps = 0/189 (0%)
Query 12 ETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADN 71
E D FRLRLLDGL SIGERGYRA+TV+D+VR ARTSKRTFYD F KE+CFLELL D
Sbjct 12 EIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKEECFLELLAVDI 71
Query 72 ETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRG 131
E LG I A+VDP ADWH QIRQAVEAYV +IE+RPA+TLSWIRE PSLGAAA PVQRRG
Sbjct 72 EKLGAKIAASVDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSLGAAARPVQRRG 131
Query 132 MEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVD 191
++ LTSLLI+LSASPGFRRA LPPL PLAVILLGGLRELTAL VEDG+P+R IVEPAVD
Sbjct 132 LQLLTSLLIDLSASPGFRRAQLPPLTAPLAVILLGGLRELTALAVEDGKPVRGIVEPAVD 191
Query 192 ASIALLGPR 200
AS+ALLGPR
Sbjct 192 ASVALLGPR 200
>gi|254822372|ref|ZP_05227373.1| transcriptional regulator, TetR family protein [Mycobacterium
intracellulare ATCC 13950]
Length=201
Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/189 (79%), Positives = 162/189 (86%), Gaps = 0/189 (0%)
Query 12 ETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADN 71
E D FRLRLLDGL SI ERGYRA+TV+D+VR ARTSKRTFYD F KE+CFLELL D
Sbjct 12 EVDPFRLRLLDGLATSITERGYRASTVADVVRCARTSKRTFYDHFAGKEECFLELLAVDI 71
Query 72 ETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRG 131
E LG I A+VDP+ADWH QIRQAVEAYV +IE+RPA+TLSWIRE PSLGAAA PVQRRG
Sbjct 72 EKLGAKIAASVDPDADWHAQIRQAVEAYVGYIEARPAITLSWIRELPSLGAAARPVQRRG 131
Query 132 MEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVD 191
++ LTSLLI+LSASPGFRRA LPPL PLAVILLGGLRELTAL VEDG P+R IVEPAVD
Sbjct 132 LQLLTSLLIDLSASPGFRRAKLPPLTAPLAVILLGGLRELTALAVEDGTPVREIVEPAVD 191
Query 192 ASIALLGPR 200
AS+ALLGPR
Sbjct 192 ASVALLGPR 200
>gi|342859435|ref|ZP_08716089.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342133676|gb|EGT86879.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=201
Score = 300 bits (769), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 148/189 (79%), Positives = 164/189 (87%), Gaps = 0/189 (0%)
Query 12 ETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADN 71
E D FRLRLLDGL +I ERGYRA+TV+DIVR+ARTSKRTFYD+F SKE+CFLELL D
Sbjct 12 EIDPFRLRLLDGLADAINERGYRASTVADIVRYARTSKRTFYDQFASKEECFLELLATDI 71
Query 72 ETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRG 131
E LG I+ +VD ADWH QIRQAVEAYV +IESRPA+TLSWIRE PSLGAAA PVQRRG
Sbjct 72 ERLGERIQVSVDAEADWHVQIRQAVEAYVGYIESRPAITLSWIRELPSLGAAARPVQRRG 131
Query 132 MEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVD 191
++ LTSLLI+LSASPGFRRA LPPL PLAVILLGGLRELTAL VEDG+P+R IVEPAVD
Sbjct 132 LQLLTSLLIDLSASPGFRRAELPPLTAPLAVILLGGLRELTALAVEDGKPVREIVEPAVD 191
Query 192 ASIALLGPR 200
AS+ALLGPR
Sbjct 192 ASVALLGPR 200
>gi|296167325|ref|ZP_06849727.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897269|gb|EFG76873.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=203
Score = 294 bits (752), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 156/199 (79%), Positives = 170/199 (86%), Gaps = 0/199 (0%)
Query 2 TAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQ 61
TA A V D FRLRLLDGL ASI ERGYRA+TV+D+VRHARTSKRTFYD F SKE+
Sbjct 4 TATATADEAVLGDPFRLRLLDGLAASITERGYRASTVADVVRHARTSKRTFYDHFASKEE 63
Query 62 CFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLG 121
CFLELL +DNE LG I AAVDP ADWH QIRQAVEAYV +IESRPA+TLSWIRE PSLG
Sbjct 64 CFLELLGSDNEKLGECIAAAVDPEADWHRQIRQAVEAYVGYIESRPAITLSWIRELPSLG 123
Query 122 AAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQP 181
AAA PVQRRG+ L+SLL++LSASPGFRRA LPPL PLAVILLGGLRELTAL VEDG+P
Sbjct 124 AAARPVQRRGLRLLSSLLVDLSASPGFRRAELPPLTAPLAVILLGGLRELTALAVEDGRP 183
Query 182 IRNIVEPAVDASIALLGPR 200
+R+IVEPAVDASIALLGPR
Sbjct 184 VRDIVEPAVDASIALLGPR 202
>gi|333988718|ref|YP_004521332.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333484686|gb|AEF34078.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=202
Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/200 (70%), Positives = 160/200 (80%), Gaps = 0/200 (0%)
Query 1 VTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKE 60
+T G + D FR RLL+GL +I ERGYRA+TV+DIVR ARTSKRTFYDRF SKE
Sbjct 2 MTLATEGEVTETADPFRRRLLEGLADAIAERGYRASTVADIVRAARTSKRTFYDRFASKE 61
Query 61 QCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSL 120
+CFLELL ADNE L IRAAVDP ADW +QIRQAV AYV I++RPA+TLSWIRE PSL
Sbjct 62 ECFLELLRADNEALAQRIRAAVDPQADWQEQIRQAVGAYVAQIQARPAITLSWIRELPSL 121
Query 121 GAAAYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
G A P QRRG++ +++LL+ELS SPGFRRA+LPPL+ L+VILLGGLRELTAL VEDG
Sbjct 122 GEVARPAQRRGLDLMSNLLVELSGSPGFRRADLPPLSPALSVILLGGLRELTALAVEDGS 181
Query 181 PIRNIVEPAVDASIALLGPR 200
I I+EPAVDASIALLGPR
Sbjct 182 DIGAIIEPAVDASIALLGPR 201
>gi|126438036|ref|YP_001073727.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126237836|gb|ABO01237.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=193
Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/191 (65%), Positives = 152/191 (80%), Gaps = 0/191 (0%)
Query 8 ALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELL 67
++VV+ D +R RLLDGL ASI ERGYR TTV+DIVRHA TSKRTFY RF +KE+CF+ELL
Sbjct 2 SVVVQDDVYRGRLLDGLAASIAERGYRDTTVADIVRHAHTSKRTFYGRFETKEECFIELL 61
Query 68 LADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPV 127
A+N+ L + AAVDP+ADW +QIRQAV AYV HI +RPA+TLSWIRE P+LGA A P+
Sbjct 62 RANNDALIARVNAAVDPDADWDEQIRQAVGAYVDHIAARPAITLSWIRELPALGAQATPM 121
Query 128 QRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVE 187
R +++LT +LI L+ S GFRRA PL+ P+AV+LLGGLRELTAL EDG+ +R I+E
Sbjct 122 HRWAIDRLTDMLIGLTGSAGFRRAGKAPLSRPVAVVLLGGLRELTALFFEDGRDVRGILE 181
Query 188 PAVDASIALLG 198
PAV AS ALLG
Sbjct 182 PAVTASTALLG 192
>gi|108802057|ref|YP_642254.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|108772476|gb|ABG11198.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
Length=201
Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/191 (65%), Positives = 152/191 (80%), Gaps = 0/191 (0%)
Query 8 ALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELL 67
++VV+ D +R RLLDGL ASI ERGYR TTV+DIVRHA TSKRTFY RF +KE+CF+ELL
Sbjct 10 SVVVQDDVYRGRLLDGLAASIAERGYRDTTVADIVRHAHTSKRTFYGRFETKEECFIELL 69
Query 68 LADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPV 127
A+N+ L + AAVDP+ADW +QIRQAV AYV HI +RPA+TLSWIRE P+LGA A P+
Sbjct 70 RANNDALIARVNAAVDPDADWDEQIRQAVGAYVDHIAARPAITLSWIRELPALGARATPM 129
Query 128 QRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVE 187
R +++LT +LI L+ S GFRRA PL+ P+AV+LLGGLRELTAL EDG+ +R I+E
Sbjct 130 HRWAIDRLTDMLIGLTGSAGFRRAGKAPLSRPVAVVLLGGLRELTALFFEDGRDVRGILE 189
Query 188 PAVDASIALLG 198
PAV AS ALLG
Sbjct 190 PAVTASTALLG 200
>gi|119871209|ref|YP_941161.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|119697298|gb|ABL94371.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
Length=193
Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/191 (65%), Positives = 152/191 (80%), Gaps = 0/191 (0%)
Query 8 ALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELL 67
++VV+ D +R RLLDGL ASI ERGYR TTV+DIVRHA TSKRTFY RF +KE+CF+ELL
Sbjct 2 SVVVQDDVYRGRLLDGLAASIAERGYRDTTVADIVRHAHTSKRTFYGRFETKEECFIELL 61
Query 68 LADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPV 127
A+N+ L + AAVDP+ADW +QIRQAV AYV HI +RPA+TLSWIRE P+LGA A P+
Sbjct 62 RANNDALIARVNAAVDPDADWDEQIRQAVGAYVDHIAARPAITLSWIRELPALGARATPM 121
Query 128 QRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVE 187
R +++LT +LI L+ S GFRRA PL+ P+AV+LLGGLRELTAL EDG+ +R I+E
Sbjct 122 HRWAIDRLTDMLIGLTGSAGFRRAGKAPLSRPVAVVLLGGLRELTALFFEDGRDVRGILE 181
Query 188 PAVDASIALLG 198
PAV AS ALLG
Sbjct 182 PAVTASTALLG 192
>gi|118470743|ref|YP_890692.1| transcriptional regulatory protein [Mycobacterium smegmatis str.
MC2 155]
gi|118172030|gb|ABK72926.1| putative transcriptional regulatory protein [Mycobacterium smegmatis
str. MC2 155]
Length=210
Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/184 (67%), Positives = 143/184 (78%), Gaps = 0/184 (0%)
Query 14 DSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNET 73
D+FR RLLDGL +I ++GYR +TV+DIVRHARTSKRTFYD+F SKE CF+ELL A+N
Sbjct 17 DAFRSRLLDGLSTAIDDKGYRDSTVADIVRHARTSKRTFYDQFASKEACFIELLRANNAA 76
Query 74 LGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGME 133
L IR+AV P A+W DQI QAV AYV HIES P++TLSWIRE P+LG AA P+QR M
Sbjct 77 LVEHIRSAVSPEAEWQDQIDQAVGAYVEHIESAPSITLSWIRELPALGPAARPLQRDAMG 136
Query 134 QLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDAS 193
LT LLI+LS SPGFRRA L L+ +A+ILLGGLRELTAL VEDG IR I EPAV AS
Sbjct 137 ALTDLLIDLSDSPGFRRAGLNGLSRQMAIILLGGLRELTALIVEDGHDIREIYEPAVAAS 196
Query 194 IALL 197
A+L
Sbjct 197 RAIL 200
>gi|145221695|ref|YP_001132373.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|145214181|gb|ABP43585.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
Length=185
Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/181 (62%), Positives = 137/181 (76%), Gaps = 0/181 (0%)
Query 19 RLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSI 78
RLLDGL +SI ERGYR TTV+DIVRHA+TSKR FY++F SKEQC +ELL +N L I
Sbjct 4 RLLDGLASSIVERGYRETTVADIVRHAKTSKRAFYEQFASKEQCLIELLRNNNTDLIAHI 63
Query 79 RAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSL 138
AAVDP +DW +QI QAV+AY+ HI +RPA+TL WIRE P+LGA A P+ R+ M LT +
Sbjct 64 NAAVDPESDWREQIGQAVDAYIGHISARPAITLCWIREAPALGAVARPLHRQVMRDLTEM 123
Query 139 LIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASIALLG 198
L L+ S GFRRA L P+ +A+ILLGGLRELTAL VEDG+ +R I PA A++ALLG
Sbjct 124 LTALTGSSGFRRAGLQPIEPAIALILLGGLRELTALFVEDGRDMRGIAGPATAAAVALLG 183
Query 199 P 199
P
Sbjct 184 P 184
>gi|315446567|ref|YP_004079446.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|315264870|gb|ADU01612.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=204
Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/181 (61%), Positives = 134/181 (75%), Gaps = 0/181 (0%)
Query 19 RLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSI 78
RLLDGL SI ERGYR TTV+DIVRHA+TSKR FY++F SKEQC +ELL +N L I
Sbjct 23 RLLDGLAFSIVERGYRETTVADIVRHAKTSKRAFYEQFASKEQCLIELLRNNNTDLIAHI 82
Query 79 RAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSL 138
AVDP +DW +QI QAV+AY+ HI +RPA+TL WIRE P+LGA A P+ R+ M LT +
Sbjct 83 NTAVDPESDWREQIGQAVDAYIGHISARPAITLCWIREAPALGAVARPLHRQVMRDLTEI 142
Query 139 LIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASIALLG 198
L L+ S GFRRA L P+ +A+ILLGGLRELTAL VEDG+ +R I PA A++ALL
Sbjct 143 LTALTGSSGFRRAGLQPIEPAIALILLGGLRELTALFVEDGRDMRGIAGPATAAAVALLS 202
Query 199 P 199
P
Sbjct 203 P 203
>gi|120406655|ref|YP_956484.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119959473|gb|ABM16478.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=198
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/167 (59%), Positives = 126/167 (76%), Gaps = 0/167 (0%)
Query 19 RLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSI 78
RLLDGL ++I ERGYR +TV+D+VR+ARTSKRTFY++F SKE+C +E+L ++ L I
Sbjct 17 RLLDGLASAITERGYRDSTVADVVRYARTSKRTFYEQFASKEECLIEMLRRNHSDLIAGI 76
Query 79 RAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSL 138
AAV+P ADW QI +AV AY+ HI +RPA+TL WIRE P LGAAA P+ R M LT L
Sbjct 77 GAAVEPEADWRLQIDKAVGAYIDHISARPAITLCWIREAPGLGAAARPLHRLVMGDLTDL 136
Query 139 LIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNI 185
L+ L+ +PGFRRA L P+ P+A+IL+GGLRELTAL VED + + I
Sbjct 137 LVSLTGNPGFRRAGLDPITAPVALILVGGLRELTALFVEDERDVHGI 183
>gi|300786377|ref|YP_003766668.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299795891|gb|ADJ46266.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340527854|gb|AEK43059.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=195
Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 99/189 (53%), Positives = 129/189 (69%), Gaps = 0/189 (0%)
Query 11 VETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLAD 70
V+T FR RLLDGL SI E G+R TTV+D+VR ARTS+RTFY+ F+S+E+C + LL
Sbjct 6 VDTRPFRRRLLDGLAESIIEAGFRDTTVADVVRRARTSRRTFYEHFSSREECLIALLAEA 65
Query 71 NETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRR 130
N ++ I AVDP A W DQ RQA+E ++ ES PA+TLSWIR+ P+LGA A +QR
Sbjct 66 NRSMIQRISEAVDPRAPWKDQARQAIETWIACAESEPAITLSWIRDIPALGAPARELQRD 125
Query 131 GMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAV 190
ME ++ L+ +P R A + P + L+++LLGGLREL A TVEDG ++ E AV
Sbjct 126 AMEGFIAMTQRLTDTPEMRAAGISPPSRQLSIMLLGGLRELIATTVEDGGRAGDVTEVAV 185
Query 191 DASIALLGP 199
ASIALLGP
Sbjct 186 RASIALLGP 194
>gi|145222266|ref|YP_001132944.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315442697|ref|YP_004075576.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145214752|gb|ABP44156.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
gi|315261000|gb|ADT97741.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=192
Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/186 (53%), Positives = 129/186 (70%), Gaps = 0/186 (0%)
Query 14 DSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNET 73
+ FR RLLD L +SI E GY TTV+DIVR ARTS+RTFY+ F S+E CF+ LL N
Sbjct 6 NDFRQRLLDALESSIAEDGYAKTTVADIVRRARTSRRTFYEHFDSREACFVALLSDANAD 65
Query 74 LGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGME 133
I AVDP+A W Q+RQA+EA+++ E+RPA+ LSWIR+ PSLGA A +QR +E
Sbjct 66 QIRQISDAVDPSAPWQKQVRQAIEAWISSGEARPALMLSWIRDVPSLGAVARGLQRDSLE 125
Query 134 QLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDAS 193
++ L A+ FR A + P++ P ++LLGGLRELTA+TVE+G + ++ E AVDAS
Sbjct 126 SFIDMVGALGATDEFRAAGVGPVSRPRIIMLLGGLRELTAITVEEGGRMSDVAEEAVDAS 185
Query 194 IALLGP 199
IALL P
Sbjct 186 IALLNP 191
>gi|326381928|ref|ZP_08203621.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395]
gi|326199354|gb|EGD56535.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395]
Length=199
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/182 (51%), Positives = 127/182 (70%), Gaps = 0/182 (0%)
Query 15 SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETL 74
+ R RLL+ ++ + ERGYRATT++DIVR ARTSKR+FY++FT K++C+LELL + N L
Sbjct 11 TVRGRLLEAMLVCLDERGYRATTIADIVRAARTSKRSFYEQFTDKQECYLELLGSVNHEL 70
Query 75 GNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQ 134
+I AAVD A W +Q+RQAV AY+ ES P++T SWIRE P+LG A VQ +E
Sbjct 71 LAAIEAAVDQGAPWREQVRQAVHAYIAVCESHPSITRSWIRELPALGDVARAVQLASLES 130
Query 135 LTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASI 194
T L+ L+++ FR A + P+ AVI+ GG+REL A T+EDG+P+R + E AV A +
Sbjct 131 FTELMARLTSTEQFRAARIEPIARETAVIIWGGIRELAASTLEDGRPLRTLEESAVAACL 190
Query 195 AL 196
AL
Sbjct 191 AL 192
>gi|120406027|ref|YP_955856.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958845|gb|ABM15850.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=190
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/186 (52%), Positives = 127/186 (69%), Gaps = 0/186 (0%)
Query 14 DSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNET 73
+ FR RLLD L ASI E GY TTV+DIVR A+TS+RTFY+ F S+E CF+ LL N
Sbjct 2 NDFRQRLLDALEASIAEDGYARTTVADIVRRAKTSRRTFYEHFDSREACFVALLSDANAD 61
Query 74 LGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGME 133
I AAVDP+A W Q+RQA+EA+++ E+R A+ LSWIR+ P+LGAAA +QR ME
Sbjct 62 QIRQIYAAVDPSAPWQKQVRQAIEAWISSGEARSALMLSWIRDVPALGAAARGLQREAME 121
Query 134 QLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDAS 193
++ L A+ FR A + P + ++LLGGLRELTA TVE+G + ++ + AV+AS
Sbjct 122 HFVDMVGALGATDEFRAAGVGPFSRRRIIMLLGGLRELTASTVEEGGRMSDVTDEAVEAS 181
Query 194 IALLGP 199
IALL P
Sbjct 182 IALLSP 187
>gi|108801470|ref|YP_641667.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870623|ref|YP_940575.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108771889|gb|ABG10611.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
gi|119696712|gb|ABL93785.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
Length=224
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/190 (51%), Positives = 128/190 (68%), Gaps = 0/190 (0%)
Query 10 VVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLA 69
V + ++FR RLLD L SI E GY+ TTV+DIVR ARTS+RTFY+ F S+E CFL LL
Sbjct 29 VEDKNNFRQRLLDALEESIAEDGYQKTTVADIVRRARTSRRTFYENFDSREACFLALLAE 88
Query 70 DNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQR 129
I AAVDP++ W Q+RQA+EA+++ E+R A+ LS R+ P+LGAAA+ +QR
Sbjct 89 AYAGQVQQISAAVDPHSPWQAQVRQAIEAWISSAEARSALMLSATRDLPALGAAAHDLQR 148
Query 130 RGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPA 189
ME ++ L + F A + P++ P V+LLGGLRELTA+TVEDG + +I + A
Sbjct 149 GVMENFIGMVQALGDTDEFHSAGIGPVSRPRVVMLLGGLRELTAITVEDGGRMSDITDEA 208
Query 190 VDASIALLGP 199
V ASIALL P
Sbjct 209 VAASIALLRP 218
>gi|126437455|ref|YP_001073146.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126237255|gb|ABO00656.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=206
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/190 (51%), Positives = 128/190 (68%), Gaps = 0/190 (0%)
Query 10 VVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLA 69
V + ++FR RLLD L SI E GY+ TTV+DIVR ARTS+RTFY+ F S+E CFL LL
Sbjct 11 VEDKNNFRQRLLDALEESIAEDGYQKTTVADIVRRARTSRRTFYENFDSREACFLALLAE 70
Query 70 DNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQR 129
I AAVDP++ W Q+RQA+EA+++ E+R A+ LS R+ P+LGAAA+ +QR
Sbjct 71 AYAGQVQQISAAVDPHSPWQAQVRQAIEAWISSAEARSALMLSATRDLPALGAAAHDLQR 130
Query 130 RGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPA 189
ME ++ L + F A + P++ P V+LLGGLRELTA+TVEDG + +I + A
Sbjct 131 GVMENFIGMVQALGDTDEFHSAGIGPVSRPRVVMLLGGLRELTAITVEDGGRMSDITDEA 190
Query 190 VDASIALLGP 199
V ASIALL P
Sbjct 191 VAASIALLRP 200
>gi|296165651|ref|ZP_06848173.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899022|gb|EFG78506.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=219
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/186 (50%), Positives = 122/186 (66%), Gaps = 0/186 (0%)
Query 16 FRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLG 75
FR RLL L SI + GY TTV+D+VR ARTS+RTFY F SK+ C++ LL N T+
Sbjct 22 FRYRLLAALEDSIADTGYAETTVADVVRRARTSRRTFYQHFDSKQDCYIALLTDSNATMI 81
Query 76 NSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQL 135
I AAV+ N+ W Q RQA+EA+ ESRPA+ LSWIR+ P+LGAAA +Q ME
Sbjct 82 KQITAAVEANSPWPHQARQAIEAWAGAAESRPALMLSWIRDVPALGAAARRLQLEFMESF 141
Query 136 TSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASIA 195
L+ L + + + P++ A++LLGGLRELTA T+E G I +I E AV+A++A
Sbjct 142 IVLVQALCNTDALQEVGVGPVSRQRAIMLLGGLRELTATTLESGGRISDITEEAVEATLA 201
Query 196 LLGPRS 201
LLGPR+
Sbjct 202 LLGPRA 207
>gi|262203252|ref|YP_003274460.1| TetR family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262086599|gb|ACY22567.1| regulatory protein TetR [Gordonia bronchialis DSM 43247]
Length=213
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 128/200 (64%), Gaps = 7/200 (3%)
Query 5 AAGALVVETD-SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCF 63
AA L + TD S R RLLD ++ IG+RGYR +TV+D+VR ARTS+RTFY F K+ CF
Sbjct 7 AAAPLDLATDGSVRGRLLDAMLTCIGDRGYRDSTVADVVRVARTSRRTFYQEFDDKQDCF 66
Query 64 LELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAA 123
+ELL NE I +D A W QIRQAV AY +SR A+TLSWIR+ P+LGAA
Sbjct 67 VELLRVANEATIRHIVDRIDAAAPWRTQIRQAVTAYAAINDSRRALTLSWIRDLPALGAA 126
Query 124 AYP------VQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVE 177
A P ++ ME +L +++++ A + P++ +AV+L GG+RELTA VE
Sbjct 127 ATPTSSVQQMKAEAMESWITLFTDITSTEVMLAAGITPMSREIAVVLWGGIRELTANAVE 186
Query 178 DGQPIRNIVEPAVDASIALL 197
GQP+ IVEPAV A +AL+
Sbjct 187 AGQPLAAIVEPAVTACVALV 206
>gi|343924793|ref|ZP_08764332.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343765300|dbj|GAA11258.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=197
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/185 (46%), Positives = 114/185 (62%), Gaps = 0/185 (0%)
Query 15 SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETL 74
S R RLL ++ + E GYR TT++D+VR A+TS+RTFY FT K+ CF ELL N +
Sbjct 10 STRERLLAAMLECVTESGYRETTIADVVRVAQTSRRTFYQEFTDKQDCFFELLRETNRFM 69
Query 75 GNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQ 134
I A VDP +Q+RQAV AY T + P + LSWIRE P+LG AA V+ M+
Sbjct 70 IARIAAGVDPEGSPEEQVRQAVTAYATTSDRYPGLMLSWIRELPALGGAAAQVKNEAMDD 129
Query 135 LTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASI 194
L + L+++P A + P++ AV L GG+RELTA VE G P+ +I+EPA A
Sbjct 130 WVDLFVGLTSTPTLAAAGVKPISRQRAVFLWGGVRELTASAVESGSPLSDIIEPATAACF 189
Query 195 ALLGP 199
AL+GP
Sbjct 190 ALMGP 194
>gi|54024143|ref|YP_118385.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54015651|dbj|BAD57021.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=205
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/184 (53%), Positives = 122/184 (67%), Gaps = 0/184 (0%)
Query 16 FRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLG 75
FR RLLDG+ A++ ERGYR TV+D+VRHARTS+RTFY+ F K+ CF+ LL N T+
Sbjct 20 FRRRLLDGMAAAVRERGYRDATVADVVRHARTSRRTFYEHFAGKQDCFIALLTERNATVI 79
Query 76 NSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQL 135
I AAVD A W QIRQAVEA++ + P +TL+WIRE P+LG +A + R
Sbjct 80 EQIAAAVDTEAPWRVQIRQAVEAWIGASQIDPTITLAWIRETPALGESAQRLHRETANAF 139
Query 136 TSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASIA 195
+L+ L+ S GF A L P + LA IL GG REL A TVEDG I +IV+ AV A++A
Sbjct 140 IALIQSLTGSAGFAAAGLRPPSRRLATILYGGFRELIATTVEDGGDIDDIVDVAVAAAVA 199
Query 196 LLGP 199
LLGP
Sbjct 200 LLGP 203
>gi|256376760|ref|YP_003100420.1| TetR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255921063|gb|ACU36574.1| transcriptional regulator, TetR family [Actinosynnema mirum DSM
43827]
Length=196
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/186 (48%), Positives = 117/186 (63%), Gaps = 0/186 (0%)
Query 15 SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETL 74
FR RLL L I E GYR TTV+D+VR ARTS+RTFY+ F KE C+ LL N+ +
Sbjct 10 GFRSRLLRALAEGIAEDGYRRTTVADVVRRARTSRRTFYEHFADKEACYARLLAEANQRI 69
Query 75 GNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQ 134
I AVDP A W +Q+RQAV A++ + P +TLSWIR+ PSLGAAA ++R +
Sbjct 70 IVRITEAVDPRAPWEEQVRQAVGAWLDAAGATPELTLSWIRDLPSLGAAARALEREVTDH 129
Query 135 LTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASI 194
++ L + R A L P++ A IL+GGLREL A VE+G+ + + EPA +A I
Sbjct 130 FVVMVQRLCDTEELRAAGLRPVDKQWATILIGGLRELMATAVEEGRGLEALAEPAAEAVI 189
Query 195 ALLGPR 200
ALLGPR
Sbjct 190 ALLGPR 195
>gi|317506532|ref|ZP_07964329.1| tetR family bacterial regulatory protein [Segniliparus rugosus
ATCC BAA-974]
gi|316255171|gb|EFV14444.1| tetR family bacterial regulatory protein [Segniliparus rugosus
ATCC BAA-974]
Length=209
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/186 (46%), Positives = 113/186 (61%), Gaps = 2/186 (1%)
Query 17 RLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGN 76
R RLLD L S+ ERG TTV+DIVR A TS+RTFY+ F SKE C+LE L +E LG
Sbjct 16 RQRLLDALEQSVVERGLLNTTVADIVRRAATSRRTFYEHFESKEACYLEFLRVAHERLGE 75
Query 77 SIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLT 136
+ AVDP+A +Q+RQ V A++ IE A+ +S +RE P LG +QRR E +
Sbjct 76 RVARAVDPSAHPVEQMRQGVRAWMAAIEEHGAIYVSAVRELPGLGQRCRQLQRRNNEVMI 135
Query 137 SLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAV-DASIA 195
+L L+ +P R P+ A++LLGGLREL +EDG + + EPA+ DA A
Sbjct 136 GILQALTDNPQLRALGGAPVRRETALVLLGGLRELAITIIEDGGSVAD-AEPAIFDAVYA 194
Query 196 LLGPRS 201
L GPR+
Sbjct 195 LFGPRA 200
>gi|284041824|ref|YP_003392164.1| TetR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283946045|gb|ADB48789.1| transcriptional regulator, TetR family [Conexibacter woesei DSM
14684]
Length=228
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/183 (41%), Positives = 116/183 (64%), Gaps = 0/183 (0%)
Query 17 RLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGN 76
R RL+ G+ A++ GYR +TV+++V HARTS+R+FY++F +E C+L L E L
Sbjct 37 RDRLVAGMAAAVRAHGYRDSTVTEVVAHARTSRRSFYEQFEDREACYLALFDVVGELLVE 96
Query 77 SIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLT 136
++ A+VDP A W +Q+ QA+ YV I S P +T+S+IRE P+LGA QR +E
Sbjct 97 AVAASVDPAAGWEEQVDQALGTYVDAIASEPELTVSFIREVPALGAVGTARQRDAIESFA 156
Query 137 SLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDASIAL 196
LL+ L++S G +R+ + +++ AV+L+GGLREL A +E +P+ + A D ++
Sbjct 157 RLLMRLASSDGMQRSGVSRVSMATAVLLVGGLRELVAHAIEHDEPLSEVRAVASDVIKSV 216
Query 197 LGP 199
L P
Sbjct 217 LDP 219
>gi|296394364|ref|YP_003659248.1| TetR family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296181511|gb|ADG98417.1| transcriptional regulator, TetR family [Segniliparus rotundus
DSM 44985]
Length=216
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/188 (44%), Positives = 106/188 (57%), Gaps = 0/188 (0%)
Query 14 DSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNET 73
+ R RLL L S+ E G TTV++IVR A TS+RTFY+ F SKE C+LE L N
Sbjct 2 NEVRRRLLAALEQSVVEHGLLNTTVAEIVRRAATSRRTFYEHFESKEACYLEFLGEINNR 61
Query 74 LGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGME 133
LG I AV + +QIRQ V A++ E+ A +S IRE PSLG + RR E
Sbjct 62 LGELITEAVGSTSHPVEQIRQGVRAWLIAAEANSAAHVSLIRELPSLGEPGRQLLRRNHE 121
Query 134 QLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEPAVDAS 193
L + +L+ +P R + P+ A ++LGGL EL TVEDG ++ AVDA
Sbjct 122 NLIGVFQKLTDNPQLRELGVKPVTRDTARVILGGLNELVISTVEDGGKPTDVEHAAVDAV 181
Query 194 IALLGPRS 201
ALLGPR+
Sbjct 182 YALLGPRA 189
>gi|159899040|ref|YP_001545287.1| TetR family transcriptional regulator [Herpetosiphon aurantiacus
DSM 785]
gi|159892079|gb|ABX05159.1| transcriptional regulator, TetR family [Herpetosiphon aurantiacus
DSM 785]
Length=200
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/176 (36%), Positives = 93/176 (53%), Gaps = 2/176 (1%)
Query 16 FRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLG 75
+R RL+DG+ A++ E+GY TT++DIVR AR SKRTFY F SKE+C L L A + L
Sbjct 10 YRSRLMDGMAAAVAEKGYAETTIADIVRLARVSKRTFYQHFASKEECLLALYTAATDQLI 69
Query 76 NSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQL 135
IR A++ D H ++R A AY+ I+ P + + E + G+ V+R ++
Sbjct 70 EVIRRAIEGAHDMHSRVRCAHRAYLQRIKEHPLLMRTLFIEILAAGSRGLQVRRAANQRF 129
Query 136 TSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIR--NIVEPA 189
LL A + + LA+ ++GG+ EL +E Q R I EPA
Sbjct 130 ADLLRATGADQQYDSPQKRHITPALAMAIVGGINELILQAMESNQIERLLEIEEPA 185
>gi|262195072|ref|YP_003266281.1| TetR family transcriptional regulator [Haliangium ochraceum DSM
14365]
gi|262078419|gb|ACY14388.1| transcriptional regulator, TetR family [Haliangium ochraceum
DSM 14365]
Length=213
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/188 (36%), Positives = 102/188 (55%), Gaps = 4/188 (2%)
Query 14 DSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNET 73
D R RL++ A+I E GY ATT++DIVR AR SKRTFY+ F+ K+ C L
Sbjct 16 DDRRTRLIEAFAAAISEDGYAATTIADIVRRARVSKRTFYEHFSDKQACLLATYAQVTSH 75
Query 74 LGNSIRAAVDPN--ADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRG 131
+RAA D + ADW +++ ++AYVT +ES PA+T + + E + G A ++R
Sbjct 76 TRACMRAAFDSHREADWRERLEAVLDAYVTALESSPALTRACLTEMAAAGPRALELRREV 135
Query 132 MEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIR--NIVEPA 189
+ +LL E+ R + ++ P+A L+GG+ EL +E G R N+ E A
Sbjct 136 HGEFAALLREVVERTRARHPEVREISPPMATALVGGIDELLLAQLERGPQHRLANLRETA 195
Query 190 VDASIALL 197
+ A+L
Sbjct 196 AELLRAVL 203
>gi|302529355|ref|ZP_07281697.1| hypothetical protein SSMG_05737 [Streptomyces sp. AA4]
gi|302438250|gb|EFL10066.1| hypothetical protein SSMG_05737 [Streptomyces sp. AA4]
Length=250
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/188 (35%), Positives = 100/188 (54%), Gaps = 4/188 (2%)
Query 10 VVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLA 69
V ++R R L + + E+ + T+ D+V A TS+R FY++F SKE C L LL
Sbjct 63 VEHPGAYRSRFTGALESLLAEKRFPKITIGDLVGRAHTSRRGFYEQFDSKEACLLALLKE 122
Query 70 DNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQR 129
ET + AAVD A W Q+RQ V A+ +++RPAV LS++R+ P L A P+
Sbjct 123 AAETGSAQVSAAVDRTAPWQTQLRQLVTAWTGVVDARPAVMLSYLRDVPLLDA---PISA 179
Query 130 R-GMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQPIRNIVEP 188
+ +++ +SA F+++ PL+ A+IL GGL +L + G +E
Sbjct 180 DLNHDAYVNVVRAISAGTEFQKSGGAPLSRARALILFGGLEKLAEDALRHGGTAHEHIEE 239
Query 189 AVDASIAL 196
AV A+I L
Sbjct 240 AVRAAILL 247
>gi|171058597|ref|YP_001790946.1| TetR family transcriptional regulator [Leptothrix cholodnii SP-6]
gi|170776042|gb|ACB34181.1| transcriptional regulator, TetR family [Leptothrix cholodnii
SP-6]
Length=212
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/162 (35%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query 17 RLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGN 76
R RLLDGL S+ RGY TT+SDI AR SKRTFY+ F+SK+QC + L + +E
Sbjct 17 RRRLLDGLAVSVARRGYSDTTISDIAAAARVSKRTFYEHFSSKQQCMIALYESASELSRR 76
Query 77 SIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLT 136
+ A+D + W +Q+ AV Y H+ P + + E SLG +R + L
Sbjct 77 QMEVAIDESLGWPEQVEAAVRRYFNHLSMHPVLMRALFMEILSLGPDGLKARRDNLNALA 136
Query 137 SLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVED 178
+ + + G L++P A L G L E L +E+
Sbjct 137 GTIARSAGTQGV------TLSLPQAASLAGMLSEWVLLAIEE 172
>gi|319793206|ref|YP_004154846.1| TetR family transcriptional regulator [Variovorax paradoxus EPS]
gi|315595669|gb|ADU36735.1| regulatory protein TetR [Variovorax paradoxus EPS]
Length=209
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/173 (31%), Positives = 88/173 (51%), Gaps = 2/173 (1%)
Query 19 RLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSI 78
RLL G+ ++ +GY TT++DIVR A S+RTFY+ F++K +C + L + ++
Sbjct 24 RLLQGMAQAVAAKGYADTTIADIVREAAVSRRTFYEHFSTKTECLIALYETASRLALQAV 83
Query 79 RAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSL 138
A DP WH Q+ QA+ AY ++ P + + E LG +RR +++ +
Sbjct 84 SEAFDPAQPWHAQVEQAMTAYFDYLAQDPVLLRTLFVEILGLGMPGLTARRRVNDEIANF 143
Query 139 LIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQP--IRNIVEPA 189
+ S G L +A+ ++GG+ EL +E G+ +R +V PA
Sbjct 144 IQVAINSSGTEGGPAAHLTSEMAMTVVGGINELVLQAIEQGRAGDLRELVAPA 196
>gi|284046020|ref|YP_003396360.1| TetR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283950241|gb|ADB52985.1| transcriptional regulator, TetR family [Conexibacter woesei DSM
14684]
Length=200
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/174 (36%), Positives = 93/174 (54%), Gaps = 6/174 (3%)
Query 11 VETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELL-LA 69
V + R RL+ G+ A++ E+GY TT++D+VRHAR SKRTFY+ F K CFL A
Sbjct 5 VAIEGARERLVCGMNAAVAEKGYAPTTIADVVRHARVSKRTFYEHFGDKRACFLAAYDTA 64
Query 70 DNETLGNSIRAAVDPNAD-WHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQ 128
LG A+ W +++ + V AY+ + ++P +T +++ E G A +
Sbjct 65 SAHVLGAMRAASEAAAGAPWSERVERVVVAYLEAMAAKPELTQTFLIEILGAGPLALAHR 124
Query 129 RRGMEQLTSLLIELSASPGFRRA--NLPPLNVPLAVILLGGLRELTALTVEDGQ 180
R ME+ L+ L A RRA L P++ LA ++GG+ EL VE G+
Sbjct 125 RETMERFADQLVALCAD--LRRAEPQLRPVSRSLATAVVGGINELVLGAVEQGR 176
>gi|84497441|ref|ZP_00996263.1| possible transcriptional regulatory protein [Janibacter sp. HTCC2649]
gi|84382329|gb|EAP98211.1| possible transcriptional regulatory protein [Janibacter sp. HTCC2649]
Length=193
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 88/155 (57%), Gaps = 1/155 (0%)
Query 19 RLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSI 78
RLLD L +I E+G TTV+DI R A TSKRTFY+ F +K++ FL L A + L +I
Sbjct 8 RLLDALGEAIVEQGLANTTVADIARIAGTSKRTFYEHFATKDEAFLALYAARSSDLLAAI 67
Query 79 RAAV-DPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTS 137
A V DP+A DQIR V AY++H+ + PA+ + + E SLG +R M+ +
Sbjct 68 SAVVTDPSAPIGDQIRAGVRAYLSHLAATPALARAHMLEAHSLGRLGLEARRELMDHHAA 127
Query 138 LLIELSASPGFRRANLPPLNVPLAVILLGGLRELT 172
L + A +L L+V +V ++ GL ELT
Sbjct 128 YLRSVVARARENTPHLRELSVADSVGVVAGLTELT 162
>gi|337279952|ref|YP_004619424.1| TetR family transcriptional regulator [Ramlibacter tataouinensis
TTB310]
gi|334731029|gb|AEG93405.1| transcriptional regulator, TetR family-like protein [Ramlibacter
tataouinensis TTB310]
Length=179
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/172 (29%), Positives = 93/172 (55%), Gaps = 6/172 (3%)
Query 20 LLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSIR 79
+LDG+ ++ +GY TT++D+VR A S+RTFY+ F++K +C + L A + ++
Sbjct 1 MLDGMARAVAAKGYADTTIADVVREASVSRRTFYEHFSTKAECLIALYEAASHNALQVLK 60
Query 80 AAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSLL 139
A+DP +W QI +A+ AY+ + P + + E +G +RR ++ +
Sbjct 61 DALDPTHEWQTQIERALAAYLGGMADNPVLMRTLFVEILGIGPEGLAARRRVNREIAGFM 120
Query 140 IELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDG--QPIRNIVEPA 189
+ + + G R+A PL+ +A+ ++GG+ EL +E ++ +V PA
Sbjct 121 LGV-VNAGGRQA---PLSPGMAMAVVGGINELVLEYIEQDRLHRLQELVGPA 168
>gi|239815338|ref|YP_002944248.1| TetR family transcriptional regulator [Variovorax paradoxus S110]
gi|239801915|gb|ACS18982.1| transcriptional regulator, TetR family [Variovorax paradoxus
S110]
Length=204
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/160 (30%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query 19 RLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSI 78
RLL+G+ ++ +GY TT++DIVR A S+RTFY+ FT+K +C + L A ++ ++
Sbjct 24 RLLEGMARAVAAKGYADTTIADIVREAAVSRRTFYEHFTTKSECLIALYEAASKLALRAV 83
Query 79 RAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSL 138
A DP WH Q+ +A+ AY ++ PA+ + E LG +RR ++
Sbjct 84 SEAFDPAQPWHAQVERAITAYFDYLAQDPALLRTLFVEILGLGMPGLAARRRVNGEIAGF 143
Query 139 LIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVED 178
+ L +A+ ++GG+ EL +E
Sbjct 144 I-----QAAINNGPAAHLTSEMAMTVVGGINELVLQAIEQ 178
>gi|271966249|ref|YP_003340445.1| TetR family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270509424|gb|ACZ87702.1| putative transcriptional regulator, TetR family [Streptosporangium
roseum DSM 43021]
Length=202
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/167 (30%), Positives = 79/167 (48%), Gaps = 1/167 (0%)
Query 15 SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETL 74
S R RL++ ++ + RGY AT+V D++ AR S+ FY +F KE CFL D L
Sbjct 4 SQRDRLVEAMLRLVARRGYAATSVPDVIAAARVSRNAFYAQFADKEACFLAGCERDLPEL 63
Query 75 GNSIRAAVDPNAD-WHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGME 133
+SIR A D W + +R + AY+ + RP ++ E P G A +
Sbjct 64 IDSIRTAASGAGDRWSEALRLGMAAYLRWWQERPEYAQAYFVELPRAGERAVEQRDAAYR 123
Query 134 QLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDGQ 180
+ L+A +LPPL + +++ G+ E A V +G+
Sbjct 124 PFLDMFGALAARARLEDPSLPPLRAAVPRLIVYGITEFIASEVREGR 170
>gi|284044621|ref|YP_003394961.1| TetR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283948842|gb|ADB51586.1| transcriptional regulator, TetR family [Conexibacter woesei DSM
14684]
Length=213
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/159 (33%), Positives = 81/159 (51%), Gaps = 11/159 (6%)
Query 17 RLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGN 76
R RLLDG+ ++ +GY AT+V+D++R AR S+RTFY+RF KE CFL A
Sbjct 27 RERLLDGMARTVAAQGYAATSVADVLREARVSRRTFYERFADKEDCFLAAYDAIVALCLE 86
Query 77 SIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLT 136
+ +A D WH+ + ++A + + + PA + E + G RG+ +
Sbjct 87 RVSSAYDAADSWHEGFERGLDALLELLAAEPAFACLGVVEVLAAGP-------RGLARRD 139
Query 137 SLLIELSASPGFRRANLP-PLNVP---LAVILLGGLREL 171
+ A RA +P PL+ P +A ++GG+ EL
Sbjct 140 ETMRRFVAFVDVTRAQVPGPLSAPPELVAQAIVGGIYEL 178
>gi|284044606|ref|YP_003394946.1| TetR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283948827|gb|ADB51571.1| transcriptional regulator, TetR family [Conexibacter woesei DSM
14684]
Length=248
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/163 (33%), Positives = 82/163 (51%), Gaps = 19/163 (11%)
Query 17 RLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFL-------ELLLA 69
R R+L + ++ E+GY TTV+DI+ AR S+RTFY+ FT KE+CFL E +LA
Sbjct 39 RERMLLAVAEAVAEQGYATTTVADIIARARLSRRTFYEHFTDKEECFLAAYDTVVEQMLA 98
Query 70 DNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQR 129
+G++ A D DW ++ +EA+V ++ + PA I E + G A +
Sbjct 99 ---GVGHAYEHAGD---DWTHRVHDGLEAFVNYLVAEPAFARMCIVEVVAAGTEARGRRD 152
Query 130 RGMEQLTSLLIELSASPGFRRANLPPLNVPLAV-ILLGGLREL 171
M L PG +A + LA I++GG+ E+
Sbjct 153 AAMRVFVDFL-----QPGREQAPRGVVVPELAADIVVGGIYEI 190
>gi|284046286|ref|YP_003396626.1| TetR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283950507|gb|ADB53251.1| transcriptional regulator, TetR family [Conexibacter woesei DSM
14684]
Length=217
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/170 (33%), Positives = 83/170 (49%), Gaps = 16/170 (9%)
Query 15 SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETL 74
S R RLL+ + A + E+GY ATTV+ ++ A S++TFY+ F K+ CFL E L
Sbjct 27 SQRGRLLEAMAACVAEQGYAATTVAHVIARAGVSRKTFYEHFADKDACFLAAWEVGFEIL 86
Query 75 GNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQ 134
+ AV+ W +Q+R A++ + + P S++ E S G A +R M +
Sbjct 87 LAQVVEAVEQAGTWQEQLRDGALAFLEVLSAEPDFARSFLIEVLSAGEDAL-ARRAEMNR 145
Query 135 LTSLLIELSASPGFRRAN--------LPPLNVPLAVILLGGLRELTALTV 176
+ +I + G+R A LPP VP A G + ELTA V
Sbjct 146 RFADVI----ADGYRAARADDPSLGPLPPF-VPQAAA--GAIWELTAEHV 188
>gi|333921593|ref|YP_004495174.1| TetR family transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483814|gb|AEF42374.1| Transcriptional regulator, TetR family [Amycolicicoccus subflavus
DQS3-9A1]
Length=208
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/169 (29%), Positives = 77/169 (46%), Gaps = 8/169 (4%)
Query 14 DSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNET 73
D+ R R+L S+ +GY ATT++D+V A S+RTFY+ F KE LLA +E
Sbjct 11 DAARTRVLAAFTESVATKGYAATTIADVVALAHVSRRTFYEHFADKESA----LLASHEE 66
Query 74 LGNSIRAAVDPNADWHDQIRQAVEAYVTH----IESRPAVTLSWIREFPSLGAAAYPVQR 129
+ A V ++ + + +E+ +T + PA T + E G A +R
Sbjct 67 FRADVIATVSKASEIGETTAERIESTITALLQVLSDSPAATKTHFVETLGAGPRAREARR 126
Query 130 RGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVED 178
+LLI L+ R + L+ +A + GGL EL E+
Sbjct 127 EMQRSFVALLISLAERAYQRNPAVRELSPEMATAVTGGLTELIVQAAEE 175
>gi|54023111|ref|YP_117353.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54014619|dbj|BAD55989.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=220
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/161 (30%), Positives = 78/161 (49%), Gaps = 3/161 (1%)
Query 15 SFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETL 74
S R RL+ +V + +GY ATT+SDIV AR S+ TFY+ F +KE CF+E + A + L
Sbjct 30 SPRGRLIAAIVDCVETKGYPATTLSDIVARARVSRSTFYEHFANKEHCFVEAVHAGIDIL 89
Query 75 GNSIR---AAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRG 131
I A + +AD +I + + + + P + E + AA V+ R
Sbjct 90 AARINGELAQLPRDADPRAKIASVITTFCETVAAEPGFARLVLVEAFRVERAAEAVRNRA 149
Query 132 MEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELT 172
+++ T L A ++PP++ L ++ + E T
Sbjct 150 VDRFTDLYRHFHAVARAGDPSVPPVSAELISLIPDAVGERT 190
>gi|256394333|ref|YP_003115897.1| TetR family transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256360559|gb|ACU74056.1| transcriptional regulator, TetR family [Catenulispora acidiphila
DSM 44928]
Length=211
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/153 (34%), Positives = 77/153 (51%), Gaps = 13/153 (8%)
Query 17 RLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELL--LADNETL 74
R RLL+G++ + ERGY A TV ++ AR S++TFY+ FT K+ CFL AD L
Sbjct 27 RTRLLNGMLEVVAERGYAAATVGAVLSRARISRQTFYEHFTDKQDCFLAAFDRSADRFAL 86
Query 75 --GNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGM 132
+S+ + DP D+I +EAY+ + + P + ++ E + AA YP R +
Sbjct 87 LIEHSLGSPKDPALQRLDRI---IEAYLGALAANPTLARIFMIE---IYAAGYPAVSRRL 140
Query 133 ---EQLTSLLIELSASPGFRRANLPPLNVPLAV 162
E ++L E R L PL V AV
Sbjct 141 ARAEAFAAILAEAVTIGRPWRGGLDPLFVARAV 173
>gi|254447782|ref|ZP_05061247.1| putative transcriptional regulator [gamma proteobacterium HTCC5015]
gi|198262562|gb|EDY86842.1| putative transcriptional regulator [gamma proteobacterium HTCC5015]
Length=175
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/145 (27%), Positives = 76/145 (53%), Gaps = 2/145 (1%)
Query 28 IGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSIRAAVDPNAD 87
+ + Y+ T++DI A+ S+RT Y+ F +K+ CFL L ++T+ + AA+D +
Sbjct 1 MSSKRYQDITIADIASAAQVSRRTIYEYFPNKDACFLALAEQTSQTIMMEMAAALDDSKT 60
Query 88 WHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYPVQRRGMEQLTSLL-IELSASP 146
W + + +AY+ I+++P + E +LG A ++ + Q L +++ A
Sbjct 61 WPELVHDITDAYLRLIDAQPQLMKVLYVELGALGEAGVAMRHQVASQFAGFLQLQIDALR 120
Query 147 GFRRANLPPLNVPLAVILLGGLREL 171
R L PL++ + + ++ G+ EL
Sbjct 121 A-RGEPLQPLDLAMGMAVVAGVNEL 144
Lambda K H
0.320 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 217214446392
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40