BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0144 Length=280 Score E Sequences producing significant alignments: (Bits) Value gi|15607286|ref|NP_214658.1| TetR family transcriptional regulat... 570 9e-161 gi|340625179|ref|YP_004743631.1| putative transcriptional regula... 562 2e-158 gi|298527534|ref|ZP_07014943.1| transcriptional regulatory prote... 550 9e-155 gi|308369312|ref|ZP_07417311.2| transcriptional regulator, tetR-... 434 1e-119 gi|167970260|ref|ZP_02552537.1| hypothetical transcriptional reg... 429 2e-118 gi|289568039|ref|ZP_06448266.1| transcriptional regulator, tetR-... 409 2e-112 gi|289441516|ref|ZP_06431260.1| LOW QUALITY PROTEIN: transcripti... 406 2e-111 gi|289756207|ref|ZP_06515585.1| TetR family transcriptional regu... 322 4e-86 gi|240168150|ref|ZP_04746809.1| TetR family transcriptional regu... 308 7e-82 gi|289445675|ref|ZP_06435419.1| LOW QUALITY PROTEIN: transcripti... 293 1e-77 gi|183980386|ref|YP_001848677.1| TetR family transcriptional reg... 286 2e-75 gi|118619824|ref|YP_908156.1| TetR family transcriptional regula... 286 2e-75 gi|41409660|ref|NP_962496.1| hypothetical protein MAP3562 [Mycob... 277 1e-72 gi|336459901|gb|EGO38813.1| transcriptional regulator [Mycobacte... 276 2e-72 gi|118467067|ref|YP_884268.1| TetR family transcriptional regula... 276 3e-72 gi|254777493|ref|ZP_05219009.1| transcriptional regulator, TetR ... 274 1e-71 gi|126432690|ref|YP_001068381.1| TetR family transcriptional reg... 264 1e-68 gi|108797068|ref|YP_637265.1| TetR family transcriptional regula... 263 2e-68 gi|118469318|ref|YP_884508.1| transcriptional regulatory protein... 258 5e-67 gi|145221339|ref|YP_001132017.1| TetR family transcriptional reg... 237 2e-60 gi|254822361|ref|ZP_05227362.1| transcriptional regulator, TetR ... 236 2e-60 gi|296167337|ref|ZP_06849739.1| TetR family transcriptional regu... 214 9e-54 gi|342859422|ref|ZP_08716076.1| TetR family transcriptional regu... 211 1e-52 gi|120401131|ref|YP_950960.1| TetR family transcriptional regula... 202 7e-50 gi|333988733|ref|YP_004521347.1| TetR family transcriptional reg... 155 6e-36 gi|324999498|ref|ZP_08120610.1| transcriptional regulatory prote... 144 1e-32 gi|324999483|ref|ZP_08120595.1| TetR family transcriptional regu... 139 4e-31 gi|108800054|ref|YP_640251.1| TetR family transcriptional regula... 133 3e-29 gi|336178054|ref|YP_004583429.1| TetR family transcriptional reg... 117 2e-24 gi|118469991|ref|YP_887492.1| transcriptional regulatory protein... 104 1e-20 gi|120403760|ref|YP_953589.1| TetR family transcriptional regula... 98.6 9e-19 gi|145224221|ref|YP_001134899.1| TetR family transcriptional reg... 86.3 5e-15 gi|296165544|ref|ZP_06848073.1| TetR family transcriptional regu... 85.1 9e-15 gi|118468120|ref|YP_885944.1| TetR family transcriptional regula... 77.0 3e-12 gi|295691005|ref|YP_003594698.1| TetR family transcriptional reg... 76.6 4e-12 gi|296167224|ref|ZP_06849629.1| transcriptional regulator [Mycob... 75.9 7e-12 gi|118619913|ref|YP_908245.1| TetR family transcriptional regula... 74.7 1e-11 gi|16124985|ref|NP_419549.1| TetR family transcriptional regulat... 73.9 2e-11 gi|240168838|ref|ZP_04747497.1| TetR family transcriptional regu... 68.9 8e-10 gi|146338730|ref|YP_001203778.1| TetR family transcriptional reg... 67.8 2e-09 gi|183980270|ref|YP_001848561.1| TetR family transcriptional reg... 67.8 2e-09 gi|345047900|gb|EGW51752.1| hypothetical protein HMPREF1022_0129... 66.2 5e-09 gi|167645017|ref|YP_001682680.1| TetR family transcriptional reg... 66.2 5e-09 gi|183980271|ref|YP_001848562.1| TetR family transcriptional reg... 65.9 6e-09 gi|303327103|ref|ZP_07357545.1| putative transcriptional regulat... 65.9 7e-09 gi|289627418|ref|ZP_06460372.1| TetR family transcriptional regu... 65.9 7e-09 gi|339504720|ref|YP_004692140.1| HTH-type TetR family transcript... 65.9 7e-09 gi|257485177|ref|ZP_05639218.1| TetR family transcriptional regu... 65.5 8e-09 gi|111222452|ref|YP_713246.1| hypothetical protein FRAAL3035 [Fr... 65.1 1e-08 gi|118619912|ref|YP_908244.1| TetR family transcriptional regula... 65.1 1e-08 >gi|15607286|ref|NP_214658.1| TetR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|15839525|ref|NP_334562.1| TetR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791322|ref|NP_853815.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97] 38 more sequence titles Length=280 Score = 570 bits (1469), Expect = 9e-161, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 1 VPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP 60 +PHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP Sbjct 1 MPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP 60 Query 61 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL 120 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL Sbjct 61 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL 120 Query 121 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYP 180 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYP Sbjct 121 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYP 180 Query 181 ASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL 240 ASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL Sbjct 181 ASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL 240 Query 241 LVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 LVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 241 LVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 >gi|340625179|ref|YP_004743631.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340003369|emb|CCC42488.1| putative transcriptional regulatory protein (possibly TETR-family) [Mycobacterium canettii CIPT 140010059] Length=280 Score = 562 bits (1448), Expect = 2e-158, Method: Compositional matrix adjust. Identities = 277/280 (99%), Positives = 278/280 (99%), Gaps = 0/280 (0%) Query 1 VPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP 60 +PHS TPTSVMTPPLVVAAFRPVGHYRLATDRAG PCSPPATGAKLTSSVASRPTVGTKP Sbjct 1 MPHSLTPTSVMTPPLVVAAFRPVGHYRLATDRAGWPCSPPATGAKLTSSVASRPTVGTKP 60 Query 61 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL 120 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL Sbjct 61 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL 120 Query 121 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYP 180 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYP Sbjct 121 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYP 180 Query 181 ASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL 240 ASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL Sbjct 181 ASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL 240 Query 241 LVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 LVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 241 LVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 >gi|298527534|ref|ZP_07014943.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|298497328|gb|EFI32622.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] Length=270 Score = 550 bits (1417), Expect = 9e-155, Method: Compositional matrix adjust. Identities = 270/270 (100%), Positives = 270/270 (100%), Gaps = 0/270 (0%) Query 11 MTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKPQWWHTLVMSM 70 MTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKPQWWHTLVMSM Sbjct 1 MTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKPQWWHTLVMSM 60 Query 71 SLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFA 130 SLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFA Sbjct 61 SLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFA 120 Query 131 NKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTV 190 NKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTV Sbjct 121 NKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTV 180 Query 191 LESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFY 250 LESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFY Sbjct 181 LESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFY 240 Query 251 IGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 IGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 241 IGFVGSYQRMATITDSFQQLLAGTLWRPPT 270 >gi|308369312|ref|ZP_07417311.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu002] gi|308370324|ref|ZP_07421084.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu003] gi|308371598|ref|ZP_07425451.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu004] 14 more sequence titles Length=214 Score = 434 bits (1115), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 213/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%) Query 67 VMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAIN 126 +MSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAIN Sbjct 1 MMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAIN 60 Query 127 HYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFL 186 HYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFL Sbjct 61 HYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFL 120 Query 187 ATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCG 246 ATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCG Sbjct 121 ATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCG 180 Query 247 VGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 VGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 181 VGFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 214 >gi|167970260|ref|ZP_02552537.1| hypothetical transcriptional regulatory protein, tetR-family [Mycobacterium tuberculosis H37Ra] gi|294994614|ref|ZP_06800305.1| transcriptional regulator, tetR-family protein [Mycobacterium tuberculosis 210] gi|308231476|ref|ZP_07412567.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu001] 8 more sequence titles Length=211 Score = 429 bits (1103), Expect = 2e-118, Method: Compositional matrix adjust. Identities = 211/211 (100%), Positives = 211/211 (100%), Gaps = 0/211 (0%) Query 70 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 129 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF Sbjct 1 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 60 Query 130 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 189 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT Sbjct 61 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 120 Query 190 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 249 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF Sbjct 121 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 180 Query 250 YIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 YIGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 181 YIGFVGSYQRMATITDSFQQLLAGTLWRPPT 211 >gi|289568039|ref|ZP_06448266.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis T17] gi|289541792|gb|EFD45441.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis T17] Length=219 Score = 409 bits (1051), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 203/213 (96%), Positives = 206/213 (97%), Gaps = 1/213 (0%) Query 69 SMSLTAGRG-PGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH 127 +++ GR PG PAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH Sbjct 7 DVNVAHGRSRPGTSPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH 66 Query 128 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA 187 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA Sbjct 67 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA 126 Query 188 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV Sbjct 127 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 186 Query 248 GFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 GFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 187 GFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 219 >gi|289441516|ref|ZP_06431260.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis T46] gi|289748619|ref|ZP_06507997.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis T92] gi|289414435|gb|EFD11675.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis T46] gi|289689206|gb|EFD56635.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis T92] Length=279 Score = 406 bits (1043), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 203/213 (96%), Positives = 206/213 (97%), Gaps = 1/213 (0%) Query 69 SMSLTAGRG-PGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH 127 +++ GR PG PAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH Sbjct 67 DVNVAHGRSRPGTSPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH 126 Query 128 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA 187 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA Sbjct 127 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA 186 Query 188 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV Sbjct 187 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 246 Query 248 GFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 GFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 247 GFYIGFVGSYQRMATITDSFQQLLAGTLWRPPT 279 >gi|289756207|ref|ZP_06515585.1| TetR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289696794|gb|EFD64223.1| TetR family transcriptional regulator [Mycobacterium tuberculosis EAS054] Length=157 Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 156/157 (99%), Positives = 157/157 (100%), Gaps = 0/157 (0%) Query 1 VPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP 60 +PHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP Sbjct 1 MPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSVASRPTVGTKP 60 Query 61 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL 120 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL Sbjct 61 QWWHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADL 120 Query 121 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARR 157 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARR Sbjct 121 TRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARR 157 >gi|240168150|ref|ZP_04746809.1| TetR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=212 Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 147/204 (73%), Positives = 174/204 (86%), Gaps = 0/204 (0%) Query 74 AGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKR 133 A RGPGRPPA K+DETR+RI+ AARQVFSERGYDGATFQ IAVRADLTRPAINHYFA+KR Sbjct 6 ARRGPGRPPATKSDETRRRIVSAARQVFSERGYDGATFQAIAVRADLTRPAINHYFASKR 65 Query 134 VLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLES 193 VLY+EVV+QT+ELV+ AGIERARRE TL+ RLA + AMEAD + P++ AFLAT VLES Sbjct 66 VLYREVVDQTNELVVTAGIERARRETTLLRRLAAFITVAMEADEKNPSTAAFLATAVLES 125 Query 194 QRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGF 253 QRHPEL R+END V +R+FL+WAV+DA+ERGEL A + V+ LAE LL+VLCGVGFY GF Sbjct 126 QRHPELGRSENDPVAGSRKFLIWAVHDAVERGELTAGIQVAPLAEALLLVLCGVGFYAGF 185 Query 254 VGSYQRMATITDSFQQLLAGTLWR 277 VGSY+ MA I + +QL+AGTLW+ Sbjct 186 VGSYREMADIIAALRQLMAGTLWK 209 >gi|289445675|ref|ZP_06435419.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis CPHL_A] gi|289418633|gb|EFD15834.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis CPHL_A] Length=175 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 146/147 (99%), Positives = 147/147 (100%), Gaps = 0/147 (0%) Query 134 VLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLES 193 +LYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLES Sbjct 29 LLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLES 88 Query 194 QRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGF 253 QRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGF Sbjct 89 QRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGF 148 Query 254 VGSYQRMATITDSFQQLLAGTLWRPPT 280 VGSYQRMATITDSFQQLLAGTLWRPPT Sbjct 149 VGSYQRMATITDSFQQLLAGTLWRPPT 175 >gi|183980386|ref|YP_001848677.1| TetR family transcriptional regulator [Mycobacterium marinum M] gi|183173712|gb|ACC38822.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium marinum M] Length=211 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/209 (71%), Positives = 173/209 (83%), Gaps = 0/209 (0%) Query 70 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 129 M LTA RGPGRPPAAKAD+TR+RI+ AAR+VFSERGYDGATFQ IAV ADLTRPAINHYF Sbjct 1 MQLTASRGPGRPPAAKADDTRRRIVGAAREVFSERGYDGATFQAIAVSADLTRPAINHYF 60 Query 130 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 189 A+K+ LY+EVV QT+ELV+ AG+ERAR TL+G+L V A EADA +PA+TAFLAT Sbjct 61 ASKQALYREVVVQTNELVVAAGVERARSVQTLLGQLCTFVMVAKEADASHPATTAFLATA 120 Query 190 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 249 VLESQRHPEL R+++DAV ATREFL AV DAI+RGEL A VD S LAE LL++LCGVGF Sbjct 121 VLESQRHPELRRSDHDAVAATREFLDTAVRDAIQRGELEAGVDASQLAEALLLLLCGVGF 180 Query 250 YIGFVGSYQRMATITDSFQQLLAGTLWRP 278 Y GFVGSY+ M I D+ +++AGTLW+P Sbjct 181 YAGFVGSYRDMENILDTLCKMMAGTLWKP 209 >gi|118619824|ref|YP_908156.1| TetR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118571934|gb|ABL06685.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium ulcerans Agy99] Length=212 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/209 (71%), Positives = 173/209 (83%), Gaps = 0/209 (0%) Query 70 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 129 M LTA RGPGRPPAAKAD+TR+RI+ AAR+VFSERGYDGATFQ IAV ADLTRPAINHYF Sbjct 2 MQLTASRGPGRPPAAKADDTRRRIVGAAREVFSERGYDGATFQAIAVSADLTRPAINHYF 61 Query 130 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 189 A+K+ LY+EVV QT+ELV+ AG+ERAR TL+G+L V A EADA +PA+TAFLAT Sbjct 62 ASKQALYREVVVQTNELVVAAGVERARSVQTLLGQLCTFVMVAKEADASHPATTAFLATA 121 Query 190 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 249 VLESQRHPEL R+++DAV ATREFL AV DAI+RGEL A VD S LAE LL++LCGVGF Sbjct 122 VLESQRHPELRRSDHDAVAATREFLDTAVRDAIQRGELEAGVDASQLAEALLLLLCGVGF 181 Query 250 YIGFVGSYQRMATITDSFQQLLAGTLWRP 278 Y GFVGSY+ M I D+ +++AGTLW+P Sbjct 182 YAGFVGSYRDMENILDTLCKMMAGTLWKP 210 >gi|41409660|ref|NP_962496.1| hypothetical protein MAP3562 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398492|gb|AAS06112.1| hypothetical protein MAP_3562 [Mycobacterium avium subsp. paratuberculosis K-10] Length=213 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/211 (64%), Positives = 162/211 (77%), Gaps = 0/211 (0%) Query 68 MSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH 127 M M R PGRPPAAKADETR+RI+ AAR VFSERGYDGATFQ IA RADLTRPAINH Sbjct 1 MRMLPRGNRRPGRPPAAKADETRQRIIQAARLVFSERGYDGATFQAIAARADLTRPAINH 60 Query 128 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA 187 YFA+KR LYQEV+++T+E VI GI+ A RE TL+GRL + A++A+A+ PA +AF+ Sbjct 61 YFASKRALYQEVMDETNEFVIGVGIKEADRETTLVGRLTAFISAAVKANAENPAGSAFIF 120 Query 188 TTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 VLESQRHPE + END+VR REFL+ VNDAIE GE+AAD+D S+L ETLLVV+CGV Sbjct 121 GGVLESQRHPEWNTAENDSVRIAREFLIRVVNDAIEHGEVAADIDASALVETLLVVMCGV 180 Query 248 GFYIGFVGSYQRMATITDSFQQLLAGTLWRP 278 G Y G+V +YQ M +T +QLL G LWRP Sbjct 181 GLYAGYVETYQEMLAVTGMLRQLLEGALWRP 211 >gi|336459901|gb|EGO38813.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=211 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 133/203 (66%), Positives = 160/203 (79%), Gaps = 0/203 (0%) Query 76 RGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVL 135 R PGRPPAAKADETR+RI+ AAR VFSERGYDGATFQ IA RADLTRPAINHYFA+KR L Sbjct 7 RRPGRPPAAKADETRQRIIQAARLVFSERGYDGATFQAIAARADLTRPAINHYFASKRAL 66 Query 136 YQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQR 195 YQEV+++T+E VI GI+ A RE TL+GRL + A++A+A+ PA +AF+ VLESQR Sbjct 67 YQEVMDETNEFVIGVGIKEADRETTLVGRLTAFISAAVKANAENPAGSAFIFGGVLESQR 126 Query 196 HPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVG 255 HPE + END+VR REFL+ VNDAIE GE+AAD+D S+L ETLLVV+CGVG Y G+V Sbjct 127 HPEWNTAENDSVRIAREFLIRVVNDAIEHGEVAADIDASALVETLLVVMCGVGLYAGYVE 186 Query 256 SYQRMATITDSFQQLLAGTLWRP 278 +YQ M +T +QLL G LWRP Sbjct 187 TYQEMLAVTGMLRQLLEGALWRP 209 >gi|118467067|ref|YP_884268.1| TetR family transcriptional regulator [Mycobacterium avium 104] gi|118168354|gb|ABK69251.1| transcriptional regulator, TetR family protein [Mycobacterium avium 104] Length=211 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/203 (66%), Positives = 160/203 (79%), Gaps = 0/203 (0%) Query 76 RGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVL 135 R PGRPPAAKADETR+RI+ AAR VFSERGYDGATFQ IA RADLTRPAINHYF++KR L Sbjct 7 RRPGRPPAAKADETRQRIIQAARLVFSERGYDGATFQAIAARADLTRPAINHYFSSKRAL 66 Query 136 YQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQR 195 YQEV+++T+E VI GI+ A RE TL+GRL + A++A+A+ PA +AF+ VLESQR Sbjct 67 YQEVMDETNEFVIGVGIKEADRETTLVGRLTAFISAAVKANAENPAGSAFIIGGVLESQR 126 Query 196 HPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVG 255 HPE + END+VR REFL+ VNDAIE GE+AAD+D S+L ETLLVV+CGVG Y G+V Sbjct 127 HPEWNTAENDSVRIAREFLIRVVNDAIEHGEVAADIDASALVETLLVVMCGVGLYAGYVE 186 Query 256 SYQRMATITDSFQQLLAGTLWRP 278 +YQ M +T +QLL G LWRP Sbjct 187 TYQEMLAVTGMLRQLLEGALWRP 209 >gi|254777493|ref|ZP_05219009.1| transcriptional regulator, TetR family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=211 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/203 (65%), Positives = 159/203 (79%), Gaps = 0/203 (0%) Query 76 RGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVL 135 R PGRPPAAKADETR+RI+ AAR VFSERGYDG TFQ IA RADLTRPAINHYF++KR L Sbjct 7 RRPGRPPAAKADETRQRIIQAARLVFSERGYDGETFQAIAARADLTRPAINHYFSSKRAL 66 Query 136 YQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQR 195 YQEV+++T+E VI GI+ A RE TL+GRL + A++A+A+ PA +AF+ VLESQR Sbjct 67 YQEVMDETNEFVIGVGIKEADRETTLVGRLTAFISAAVKANAENPAGSAFIIGGVLESQR 126 Query 196 HPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVG 255 HPE + END+VR REFL+ VNDAIE GE+AAD+D S+L ETLLVV+CGVG Y G+V Sbjct 127 HPEWNTAENDSVRIAREFLIRVVNDAIEHGEVAADIDASALVETLLVVMCGVGLYAGYVE 186 Query 256 SYQRMATITDSFQQLLAGTLWRP 278 +YQ M +T +QLL G LWRP Sbjct 187 TYQEMLAVTGMLRQLLEGALWRP 209 >gi|126432690|ref|YP_001068381.1| TetR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232490|gb|ABN95890.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS] Length=211 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 129/211 (62%), Positives = 161/211 (77%), Gaps = 0/211 (0%) Query 70 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 129 M TA RGPGRPPAAKA ETR+RIL AAR+VFSE GYD ATFQ IA+RADLTRPAINHYF Sbjct 1 MPHTASRGPGRPPAAKAAETRERILRAAREVFSELGYDAATFQAIAIRADLTRPAINHYF 60 Query 130 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 189 A+KRVLY+EVVEQT+ VI AG+ERA E TL+GRL+ AM A+++ ++ AFL T+ Sbjct 61 ASKRVLYREVVEQTNAWVISAGMERAHGEGTLLGRLSAFFSAAMHAESEDRSAAAFLVTS 120 Query 190 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 249 VLESQRHP+L E+DA+R +R F+ WAVNDAIERGEL+ D D+ S+ E L+ V+ G+GF Sbjct 121 VLESQRHPDLRSDEHDALRMSRSFVSWAVNDAIERGELSTDTDIPSIVEMLVAVMWGMGF 180 Query 250 YIGFVGSYQRMATITDSFQQLLAGTLWRPPT 280 Y G+VG Q + I + F+ L+A LW+ T Sbjct 181 YAGYVGGQQELEVIVEKFELLMANKLWQLNT 211 >gi|108797068|ref|YP_637265.1| TetR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866153|ref|YP_936105.1| TetR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767487|gb|ABG06209.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS] gi|119692242|gb|ABL89315.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS] Length=211 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/208 (62%), Positives = 160/208 (77%), Gaps = 0/208 (0%) Query 70 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 129 M TA RGPGRPPAAKA ETR+RIL AAR+VFSE GYD ATFQ IA+RADLTRPAINHYF Sbjct 1 MPHTASRGPGRPPAAKAAETRERILRAAREVFSELGYDAATFQAIAIRADLTRPAINHYF 60 Query 130 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 189 A+KRVLY+EVVEQT+ VI AG+ERA E TL+GRL+ AM A+++ ++ AFL T+ Sbjct 61 ASKRVLYREVVEQTNAWVISAGMERAHGEGTLLGRLSAFFSAAMHAESEDRSAAAFLVTS 120 Query 190 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 249 VLESQRHP+L E+DA+R +R F+ WAVNDAIERGEL+ D D+ S+ E L+ V+ G+GF Sbjct 121 VLESQRHPDLRSDEHDALRMSRSFVSWAVNDAIERGELSTDTDIPSIVEMLVAVMWGMGF 180 Query 250 YIGFVGSYQRMATITDSFQQLLAGTLWR 277 Y G+VG Q + I + F+ L+A LW+ Sbjct 181 YAGYVGGQQELEVIVEKFELLMANKLWQ 208 >gi|118469318|ref|YP_884508.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118170605|gb|ABK71501.1| probable transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] Length=211 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/208 (60%), Positives = 157/208 (76%), Gaps = 0/208 (0%) Query 70 MSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYF 129 M+ A RGPGRPPAAKA ETR+RIL AAR+VFSE GYD ATFQ IA+RADLTRPAINHYF Sbjct 1 MAHIASRGPGRPPAAKAAETRERILSAAREVFSELGYDAATFQAIAIRADLTRPAINHYF 60 Query 130 ANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATT 189 +KRVLY+EVVEQT+ VI AG+ RAR +L+GRL+ AM+A++ +S AFL T+ Sbjct 61 GSKRVLYREVVEQTNATVIAAGVARAREATSLLGRLSAFFAAAMDAESADRSSAAFLVTS 120 Query 190 VLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGF 249 VLESQRHP+L E DA+ +R+F+ WAVNDAIERGEL D D+ ++ E L+ V+ G+GF Sbjct 121 VLESQRHPDLVSEEQDALLNSRKFVAWAVNDAIERGELTTDTDIPAIVEMLVAVMWGMGF 180 Query 250 YIGFVGSYQRMATITDSFQQLLAGTLWR 277 Y G+VG + +A I D F+ L+A LW+ Sbjct 181 YAGYVGRSEELAAIVDKFEMLMANKLWQ 208 >gi|145221339|ref|YP_001132017.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315441777|ref|YP_004074656.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145213825|gb|ABP43229.1| transcriptional regulator, TetR family [Mycobacterium gilvum PYR-GCK] gi|315260080|gb|ADT96821.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1] Length=217 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/215 (55%), Positives = 154/215 (72%), Gaps = 2/215 (0%) Query 63 WHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTR 122 WH ++ TA RGPGRPPAAKA ETR+RIL AAR+VFSE GYD ATFQ IA+RADLTR Sbjct 2 WHNF--NVPYTASRGPGRPPAAKAAETRERILRAAREVFSELGYDAATFQAIAIRADLTR 59 Query 123 PAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPAS 182 PAINHYFA+K VL+ EVVEQT+ ++ I RA +L+ RL+ + A +A++ ++ Sbjct 60 PAINHYFASKGVLWAEVVEQTNATIVSEAIARAHEHTSLIERLSAFLTVATQAESDDRSA 119 Query 183 TAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLV 242 AFL T+VLESQRHPEL E+D+++ +R F+ AV+DAIERGEL+AD DV+ L E L+ Sbjct 120 AAFLVTSVLESQRHPELINDEHDSLKNSRRFVSAAVSDAIERGELSADTDVTHLVEMLVA 179 Query 243 VLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWR 277 V+ G+GFY GFVG ++ + + LLAG LW Sbjct 180 VVWGMGFYAGFVGDRSDLSAVVHKLELLLAGKLWN 214 >gi|254822361|ref|ZP_05227362.1| transcriptional regulator, TetR family protein [Mycobacterium intracellulare ATCC 13950] Length=181 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 112/179 (63%), Positives = 139/179 (78%), Gaps = 0/179 (0%) Query 100 VFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREP 159 +FSERGYDGATFQ IA RADLTRPAINHYF++KR LY+EV+E T+E VI AGI+ A E Sbjct 1 MFSERGYDGATFQAIASRADLTRPAINHYFSSKRALYREVLEDTNEFVIAAGIKEADAET 60 Query 160 TLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVN 219 L+ RL + A+ A+++ PA +AFL + VLESQRHP+L+ T+N +VR REFL+ AVN Sbjct 61 GLVARLTAFISVAVRANSENPAGSAFLMSGVLESQRHPDLTGTDNSSVRVCREFLLRAVN 120 Query 220 DAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRP 278 DAIE GELAADVD S+L ETLLV++CGVG Y G+V SYQ+M +T +QLL G LWRP Sbjct 121 DAIENGELAADVDASALVETLLVIICGVGLYAGYVESYQQMLAVTGMLRQLLEGALWRP 179 >gi|296167337|ref|ZP_06849739.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897281|gb|EFG76885.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=187 Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 109/182 (60%), Positives = 135/182 (75%), Gaps = 0/182 (0%) Query 94 LHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVIVAGIE 153 + AAR VFSERGYDGATFQ IA RADLTRPAINHYF +KRVLY+EV+EQT++ VI GIE Sbjct 1 MRAARLVFSERGYDGATFQAIAARADLTRPAINHYFPSKRVLYREVLEQTNQAVIGTGIE 60 Query 154 RARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTENDAVRATREF 213 A REPTL +LA + A+ A++ PA +A + T VLESQRHPE + TEN++VR REF Sbjct 61 EAEREPTLPAQLAAFISVAVRANSDNPAGSALIITGVLESQRHPEWNTTENESVRIVREF 120 Query 214 LVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATITDSFQQLLAG 273 LV V AI RGE+AAD+D ++L E LLV++CGVG Y GFV S + +IT ++LL G Sbjct 121 LVRGVAAAIGRGEVAADIDAAALVEALLVLMCGVGLYAGFVQSPDDLLSITGIMRRLLEG 180 Query 274 TL 275 L Sbjct 181 AL 182 >gi|342859422|ref|ZP_08716076.1| TetR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342133663|gb|EGT86866.1| TetR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=182 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/179 (57%), Positives = 134/179 (75%), Gaps = 0/179 (0%) Query 100 VFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVIVAGIERARREP 159 VFSERGYDGATFQ IA RADLTRPAINHYF++KR LY+EV++ T+E VI AGI++A RE Sbjct 2 VFSERGYDGATFQAIAARADLTRPAINHYFSSKRALYREVLDDTNEFVIGAGIKQAERET 61 Query 160 TLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTENDAVRATREFLVWAVN 219 TL +L + A A+++ PA +AFL T VLESQRHP+L+ T+ND+VR R+FL+ +N Sbjct 62 TLAAQLTAFIAEATRANSKNPAGSAFLITGVLESQRHPDLTGTDNDSVRIARDFLLRVIN 121 Query 220 DAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLWRP 278 +AIERGE+ ADVD + +AE LLV++CGVG Y G+V S + + + +QLL G +P Sbjct 122 EAIERGEIVADVDATVMAEALLVLVCGVGVYAGYVESPENLLALVGVMRQLLEGAFRKP 180 >gi|120401131|ref|YP_950960.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119953949|gb|ABM10954.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii PYR-1] Length=187 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 97/184 (53%), Positives = 128/184 (70%), Gaps = 0/184 (0%) Query 94 LHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVIVAGIE 153 + AAR++FSE GYD ATFQ IAVRADLTRPAINHYF++KRVL+ EVVEQT+ V+ GI Sbjct 1 MRAAREIFSELGYDAATFQAIAVRADLTRPAINHYFSSKRVLWAEVVEQTYASVVGVGIA 60 Query 154 RARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTENDAVRATREF 213 RA + +L+ RL + A + D ++ AFL T+VLESQRHPEL+ ++D++ +R F Sbjct 61 RAHEQTSLLNRLMAFLSVATQVDTDDRSAAAFLVTSVLESQRHPELADDDHDSLTNSRAF 120 Query 214 LVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATITDSFQQLLAG 273 + WAVNDA+ RGEL+AD DV+ L E L+ V+ G+GFY GFVG + + LLA Sbjct 121 VSWAVNDAVARGELSADTDVNHLVEMLVAVVWGMGFYAGFVGDRSDFGAVMHKLELLLAN 180 Query 274 TLWR 277 LW Sbjct 181 KLWN 184 >gi|333988733|ref|YP_004521347.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] gi|333484701|gb|AEF34093.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] Length=220 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 95/200 (48%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query 79 GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQE 138 GRP A++ TR+RI+ AA VF E GY TFQ IA RA LTRPAINHYF+NK++LYQ Sbjct 10 GRPRGARSSVTRERIVVAASGVFGEFGYHATTFQAIAARAHLTRPAINHYFSNKQLLYQA 69 Query 139 VVEQTHELVIVAGIERARREPTLMGRLA-VVVDFAMEADAQYPASTAFLATTVLESQRHP 197 V+ + +E ++ +ERAR E L+ RL+ V+ FA +A A+ T VL++QR P Sbjct 70 VLNR-NESILDNAVERARAENGLIARLSSVIYAFAQLGEADRTAAAF-AVTAVLDAQRDP 127 Query 198 ELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSY 257 EL D TR FL A+ DAI+RGEL V L ETLL VL G+GFYI +G + Sbjct 128 ELRALVGDLQGPTRRFLTDALTDAIDRGELVTATSVGDLTETLLAVLWGIGFYIAALGDH 187 Query 258 QRMATITDSFQQLLAGTLWR 277 A + S Q LLA LW+ Sbjct 188 DESAAVIASVQALLANRLWQ 207 >gi|324999498|ref|ZP_08120610.1| transcriptional regulatory protein [Pseudonocardia sp. P1] Length=181 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 113/180 (63%), Gaps = 0/180 (0%) Query 97 ARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVIVAGIERAR 156 AR VFS+ GY+ A+F EIA RA +TRPA+NHYF +K LY + + T + V+ AG+ A Sbjct 2 ARDVFSDLGYEKASFMEIAHRAGVTRPAVNHYFGSKEALYGALFDATRDSVVDAGVANAM 61 Query 157 REPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTENDAVRATREFLVW 216 E L ++ ++ A + D++ F+A +VL+S RHPEL+ + R FL Sbjct 62 NEHKLTRQIGAFLEAAAQVDSRDRTHARFIAASVLDSVRHPELNDRALGQLAEVRVFLEQ 121 Query 217 AVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATITDSFQQLLAGTLW 276 A+ AIERGE+ D+D++++ E L+ +L G+G Y G+VG++Q++ ++ F +LL G LW Sbjct 122 ALRTAIERGEIRHDLDITAVTEMLIAILWGMGLYAGYVGTHQQLDSVVQQFTRLLEGDLW 181 >gi|324999483|ref|ZP_08120595.1| TetR family transcriptional regulator [Pseudonocardia sp. P1] Length=239 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 1/197 (0%) Query 83 AAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQ 142 AA +TR RIL AAR+ FSE GYD + IA R+ LTR A++HYF+NK LY + + Sbjct 34 AADGAQTRDRILWAARETFSELGYDKTSITVIADRSGLTRTAVSHYFSNKEALYGALFDA 93 Query 143 THELVIVAGIERARREPTLMGR-LAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSR 201 + V+ A + E + R + V A D+Q P+ F+A ++L+S RHPEL Sbjct 94 VRDGVVRASLTTGAAEYRGVARQITAFVQAAARMDSQDPSYARFIAASLLDSFRHPELRE 153 Query 202 TENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMA 261 D + R FL ++ A +RGE+ A DV ++ E L+ L G+G Y G+VG+ ++ Sbjct 154 RARDQLDDVRAFLAQSLTHAAQRGEIDARTDVDAVTEMLVAALWGMGLYAGYVGTQHQLE 213 Query 262 TITDSFQQLLAGTLWRP 278 + D F ++L GTLW P Sbjct 214 QVVDQFGRMLEGTLWGP 230 >gi|108800054|ref|YP_640251.1| TetR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869180|ref|YP_939132.1| TetR family transcriptional regulator [Mycobacterium sp. KMS] gi|126435687|ref|YP_001071378.1| TetR family transcriptional regulator [Mycobacterium sp. JLS] gi|108770473|gb|ABG09195.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS] gi|119695269|gb|ABL92342.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS] gi|126235487|gb|ABN98887.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS] Length=235 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/199 (40%), Positives = 109/199 (55%), Gaps = 4/199 (2%) Query 81 PPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVV 140 P A + ETR++I+ A R V ERGY G TFQ IA R L+RP +++YFA + +Y+ +V Sbjct 17 PVGADSAETRRQIVRAGRVVLIERGYSGMTFQAIAERTGLSRPTLHYYFATREEVYEGIV 76 Query 141 EQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELS 200 + E+V V +E + R L+ RLA V D + P+ FL + LE QR+PEL Sbjct 77 TEMREIV-VDCVEHSLRHDRLLDRLAAFVAAVRRVDHRDPSVVPFLISARLEPQRNPELQ 135 Query 201 RTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRM 260 VRA FL+ V+DAI RGEL D DV +++ L V+L G+ FY GF + Sbjct 136 AISESPVRA---FLMRLVSDAIRRGELDDDTDVEGVSDMLHVILYGMAFYSGFTNGPAEL 192 Query 261 ATITDSFQQLLAGTLWRPP 279 TI +L A L P Sbjct 193 GTIAKQLIELFAHGLVAGP 211 >gi|336178054|ref|YP_004583429.1| TetR family transcriptional regulator [Frankia symbiont of Datisca glomerata] gi|334859034|gb|AEH09508.1| transcriptional regulator, TetR family [Frankia symbiont of Datisca glomerata] Length=232 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/213 (34%), Positives = 108/213 (51%), Gaps = 0/213 (0%) Query 63 WHTLVMSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTR 122 W + MS + R GRPP + TR RIL +AR +FS GY AT EIA A +TR Sbjct 6 WFPVKEKMSKPSARKLGRPPGSNGAVTRGRILRSARALFSTVGYRDATPAEIAEDAGVTR 65 Query 123 PAINHYFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPAS 182 I YF +K LY V E + VI + L+ ++A V + + P Sbjct 66 STIYRYFPSKSDLYAAVFESMYPSVIDRMRTQTSAHTALVDQVATVFRVCAALNHEDPTY 125 Query 183 TAFLATTVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLV 242 F T++++ R+PEL+ + + R+F + +V+ AI RGEL +DVD + + L+ Sbjct 126 ARFAITSLVDGLRYPELTNQAREQIGEMRDFFLVSVDRAIARGELPSDVDSRVIGDMLVA 185 Query 243 VLCGVGFYIGFVGSYQRMATITDSFQQLLAGTL 275 +LCG+G + VG+ + T+ + LAG L Sbjct 186 ILCGMGLFSAIVGTERETDDATEMLVRFLAGEL 218 >gi|118469991|ref|YP_887492.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118171278|gb|ABK72174.1| probable transcriptional regulatory protein, putative [Mycobacterium smegmatis str. MC2 155] Length=214 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 5/200 (2%) Query 76 RGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVL 135 R PGRP A + +TR IL ++ +ERG+ TFQ +A R+ L+RP +N+YFA + L Sbjct 12 RAPGRPVGADSAQTRMHILRVGCELINERGFAALTFQGVAKRSGLSRPTLNYYFATRDEL 71 Query 136 YQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQR 195 + +V + + +V I A+++ + R+ ++D +A + P FL LE+ R Sbjct 72 FHALVHEGNAIVQEC-IAAAKQQEDPLERVCALLDAMADAWSADPCLCQFLVNARLEAGR 130 Query 196 HPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVG 255 +P L N A R+FL V DAI G L+A D + +A+ L ++ GVG +G+ G Sbjct 131 NPALP---NGIATAIRDFLDDVVGDAIAGGALSAHTDPAPVAQLLHAMVWGVGLCLGYGG 187 Query 256 SYQRMATITDSFQQLLAGTL 275 + IT + +AG L Sbjct 188 TSDP-KLITKQLESAIAGGL 206 >gi|120403760|ref|YP_953589.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956578|gb|ABM13583.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii PYR-1] Length=213 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/182 (38%), Positives = 98/182 (54%), Gaps = 8/182 (4%) Query 76 RGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVL 135 R PGRP A +D+TR+ IL AAR V +E GY ATFQ+IA+RA ++RP +++YFA + L Sbjct 5 RRPGRPVGANSDQTRRTILCAARDVIAEHGYRAATFQQIALRAGVSRPTLHYYFATREQL 64 Query 136 YQEVVEQTHELVIVAGIERARREPTLMGRLAVVVD-FAMEADAQYPASTAFLATTVLESQ 194 Y+ ++ + A + R E TL G L ++ F E A A + V Sbjct 65 YEVLLAD-----VRAEVARCAAEATLAGSLLRQLEVFIAEMHRLGGAEPALMGLVVTARV 119 Query 195 RHPELSRTE-NDAVRAT-REFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIG 252 H + R E AV AT F V DA+ RGELA D D ++A+ L + G+ F+ G Sbjct 120 DHRGVLRHEAATAVVATVHAFFDAVVVDAVRRGELAFDTDAHAVADLLGALFWGLVFHAG 179 Query 253 FV 254 F+ Sbjct 180 FI 181 >gi|145224221|ref|YP_001134899.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444555|ref|YP_004077434.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145216707|gb|ABP46111.1| transcriptional regulator, TetR family [Mycobacterium gilvum PYR-GCK] gi|315262858|gb|ADT99599.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1] Length=228 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/189 (34%), Positives = 96/189 (51%), Gaps = 11/189 (5%) Query 69 SMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHY 128 ++S++AGR GRP AA +++TR+ +L AAR + +ERGY TFQ+IA RA ++RP +++Y Sbjct 5 TLSVSAGRKRGRPVAADSEQTRRTVLAAARDIIAERGYQATTFQQIAQRAGVSRPTLHYY 64 Query 129 FANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLAT 188 FA + LY ++ E + A ++ +L G+LA F E + A A + Sbjct 65 FATREDLYDALLADVCERLGRCAAAAAGQD-SLRGQLAA---FMAEMNRLAVAEPAMMKL 120 Query 189 TVLESQRH-------PELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLL 241 V H E D V +F V A RGEL A D ++A+ L Sbjct 121 VVTARIDHHGARIGTGEGRGAATDIVSTVHDFYDAVVLAAAARGELPAGHDPHAVADMLA 180 Query 242 VVLCGVGFY 250 V G+GF+ Sbjct 181 AVFWGLGFH 189 >gi|296165544|ref|ZP_06848073.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899122|gb|EFG78599.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=208 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/199 (31%), Positives = 99/199 (50%), Gaps = 1/199 (0%) Query 74 AGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKR 133 A RGPGRP A ETR +ILH+AR+VFS G+D A+ ++IA A TR AI +Y+ +K Sbjct 6 ARRGPGRPLGADGAETRLKILHSAREVFSTIGFDRASLRQIAEEAGFTRNAIANYYPSKI 65 Query 134 VLYQEVVEQTHELVIVAGIERARREP-TLMGRLAVVVDFAMEADAQYPASTAFLATTVLE 192 LY+ + HE+VI + A + ++ R+ V D A+ F T+ + Sbjct 66 ELYRAALTSVHEVVISEILGPALCQTGSIDRRIVAVFDRAVATIRIDQTFVRFFVTSTAD 125 Query 193 SQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIG 252 + HP+L + A E A+ A GE+ A +D + + L+ +L G+ G Sbjct 126 AIHHPDLRDQAMQPLVAVHEHFAAALAAAQRDGEVDAGIDTEATTQVLVDLLWGLAVDAG 185 Query 253 FVGSYQRMATITDSFQQLL 271 F R ++ ++++ Sbjct 186 FYSDQHRTRRTLEALERIV 204 >gi|118468120|ref|YP_885944.1| TetR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169407|gb|ABK70303.1| transcriptional regulator, TetR family protein [Mycobacterium smegmatis str. MC2 155] Length=207 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/209 (28%), Positives = 105/209 (51%), Gaps = 5/209 (2%) Query 68 MSMSLTAGRGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINH 127 M + A GPGRP + +TR+R++ AA + F++ GY AT +IA A +T ++ + Sbjct 1 MRQTRAARSGPGRPAGTDSVDTRQRVIDAACRCFAQFGYGPATNNQIAEMAGVTAGSVYY 60 Query 128 YFANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLA 187 +F K L++ V + + ++ + +++G L V+ +M + + P F+A Sbjct 61 HFGTKNKLFEAVCDDVYGKILTRVMLAVSGSHSVVGLLRAVLTESMRINHESPELAGFVA 120 Query 188 TTVLESQRHPELSRTENDAVRATR--EFLVWAVNDAIERGELAADVDVSSLAETLLVVLC 245 T ++++RH EL+ E+ A + R + L AV + G++AAD+D +A + V+ Sbjct 121 TAPIDARRHRELA--ESFATQGARMADALTDAVRSGQDAGDIAADLDPVRVARLISAVVD 178 Query 246 GVGFYIGFVGSYQRMATITDSFQQLLAGT 274 G + M + + FQ LL T Sbjct 179 GFA-HAAVSADPDEMDNMNELFQSLLLDT 206 >gi|295691005|ref|YP_003594698.1| TetR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432908|gb|ADG12080.1| transcriptional regulator, TetR family [Caulobacter segnis ATCC 21756] Length=215 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/157 (36%), Positives = 88/157 (57%), Gaps = 12/157 (7%) Query 89 TRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI 148 TR+R+L AAR++FSERGY+GAT ++IA A ++ A+ FA+K L++E++ HE VI Sbjct 28 TRERVLAAARRLFSERGYEGATIRDIAQAAGMSTGAVFASFADKSELFEEILTADHE-VI 86 Query 149 VAGIERARR-----EPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTE 203 A + +A R + LMG V F +E Q P A +A + S+ +RTE Sbjct 87 HAQMNQAARTAKTVDEALMGLFGVAYSFHVE---QLPLLRASIAVSWTRSEAAERRARTE 143 Query 204 NDAVRATREFLVWAVNDAIERGELAADVDVSSLAETL 240 ++ + + A+ +E+ +L ADVD LAE + Sbjct 144 ---LKHLFQLIDEALQRGVEQKQLKADVDAKLLAEII 177 >gi|296167224|ref|ZP_06849629.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897400|gb|EFG77001.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=216 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/164 (34%), Positives = 79/164 (49%), Gaps = 3/164 (1%) Query 70 MSLTAGRGP-GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHY 128 MS+T R P GRP A + TR RI+ AA + +E GY +T +EIA AD+T ++ HY Sbjct 1 MSVT--RSPLGRPVGADGERTRARIIDAAMRCVAEMGYSRSTIREIARTADMTSGSLYHY 58 Query 129 FANKRVLYQEVVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLAT 188 F NK L V E + + A R ++ RL V+D A ++P AF Sbjct 59 FPNKSELLDAVAEDVERIALPRLRAAAGRADGVVDRLGSVLDEASRLMREHPHLAAFDRA 118 Query 189 TVLESQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVD 232 ES HPE R + ++A + + ++DA G L D Sbjct 119 VRAESNEHPERGRPKYPGLKALHDMIFELLDDARATGALPPGTD 162 >gi|118619913|ref|YP_908245.1| TetR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118572023|gb|ABL06774.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium ulcerans Agy99] Length=220 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/198 (29%), Positives = 93/198 (47%), Gaps = 1/198 (0%) Query 79 GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQE 138 GRP A+ ++TR+RI+ AA + +E G A+ +EIA AD+T ++ HYF NK L Sbjct 13 GRPVGARGEQTRQRIITAAMRCVAEAGPAQASIREIAKAADMTSGSLYHYFPNKSELLNA 72 Query 139 VVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPE 198 + E+V+ A ++ RL V+D + YP FL E+ Sbjct 73 TATEIEEIVLPRLHAAAASSDDIVDRLDAVLDESKRLMRDYPYLAGFLRAVRAENADQTG 132 Query 199 LSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQ 258 R +A R+ + V+DA RG L+A + + + + + G+ +G Sbjct 133 GGRRTYPGSKALRDVITEIVDDARGRGVLSAGIAPGAAVDAICALTRGLTEQAANLGPQS 192 Query 259 RMATITDSFQQLLAGTLW 276 T+ DS +QLL G+L+ Sbjct 193 YDVTL-DSAKQLLRGSLF 209 >gi|16124985|ref|NP_419549.1| TetR family transcriptional regulator [Caulobacter crescentus CB15] gi|221233706|ref|YP_002516142.1| TetR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13421961|gb|AAK22717.1| transcriptional regulator, TetR family [Caulobacter crescentus CB15] gi|220962878|gb|ACL94234.1| transcriptional regulator, TetR family [Caulobacter crescentus NA1000] Length=215 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/200 (30%), Positives = 102/200 (51%), Gaps = 30/200 (15%) Query 89 TRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI 148 TR+R+L AAR++FSERGY+GAT ++IA A ++ A+ FA+K L++E++ +E++ Sbjct 28 TRERVLAAARRLFSERGYEGATIRDIAQAAGMSTGAVFASFADKSELFEEILTADYEVIY 87 Query 149 VAGIERARREPT----LMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTEN 204 I+ AR T L+G V F +E Q P A ++ + S+ R N Sbjct 88 AQMIQAARTAKTVDEALLGLFGVAYSFHVE---QLPLLRASISVSWTRSEAAER--RARN 142 Query 205 DAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQR----- 259 D ++ + + A+ A++ G+L D+D LAE + V +V +Y+R Sbjct 143 D-LKHIFKLIGVALQRAVDEGQLKKDIDAKLLAEIVWDV---------YVANYRRAVYDG 192 Query 260 ------MATITDSFQQLLAG 273 +A ++D + + AG Sbjct 193 WSVEALLARLSDQLKVIFAG 212 >gi|240168838|ref|ZP_04747497.1| TetR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=204 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 55/193 (29%), Positives = 90/193 (47%), Gaps = 1/193 (0%) Query 84 AKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQT 143 A ++TR+RI+ AA + +E GY AT +EIA AD+T ++ HYF NK L E+ Sbjct 3 AYGEQTRQRIIAAAMRCVAEVGYSQATIREIARAADMTSGSLYHYFPNKSELLNATGEEI 62 Query 144 HELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTE 203 ++V+ A + ++ RL V+D + YP AFL +ES + Sbjct 63 EQIVLPRLRAAAAQSDDVVDRLDAVLDESTRLIHDYPHLAAFLRAVRIESNARSSRDGPK 122 Query 204 NDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATI 263 +A R+ + V DA G L+ D + E + + G+ + AT+ Sbjct 123 YPGSKALRDVVSEIVADAHRHGALSPDTGPTGAVEAICALTRGLSEQAASLAPEAYAATL 182 Query 264 TDSFQQLLAGTLW 276 S ++L+ GTL+ Sbjct 183 -GSAKRLIRGTLF 194 >gi|146338730|ref|YP_001203778.1| TetR family transcriptional regulator [Bradyrhizobium sp. ORS 278] gi|146191536|emb|CAL75541.1| Putative transcriptional regulatory protein, TetR family [Bradyrhizobium sp. ORS 278] Length=229 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/130 (38%), Positives = 68/130 (53%), Gaps = 18/130 (13%) Query 79 GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQE 138 GRPP A A +RIL AAR+VF ERG+DG + EIA RA ++P I +A K L+ Sbjct 24 GRPPKALAGNIEERILDAAREVFLERGFDGTSIDEIAERAPASKPTIYARYAGKPALFAA 83 Query 139 VVEQT-HELVIV-------AGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTV 190 +VE++ EL + AG + + L G +VD AM+ S L T+ Sbjct 84 IVERSIGELTALRSTYTPPAGTVQEK----LAGLATAIVDRAMK------ESIGLLRVTI 133 Query 191 LESQRHPELS 200 E+ R P+LS Sbjct 134 GEAYRFPDLS 143 >gi|183980270|ref|YP_001848561.1| TetR family transcriptional regulator [Mycobacterium marinum M] gi|183173596|gb|ACC38706.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium marinum M] Length=205 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/193 (28%), Positives = 90/193 (47%), Gaps = 1/193 (0%) Query 84 AKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQT 143 A+ ++TR+RI+ AA + +E G A+ +EIA AD+T ++ HYF NK L + Sbjct 3 ARGEQTRQRIITAAMRCVAEAGPAQASIREIAKAADMTSGSLYHYFPNKSELLNATATEI 62 Query 144 HELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTE 203 E+V+ A ++ RL V+D + YP FL E+ R Sbjct 63 EEIVLPRLHAAAASSDDIVDRLDAVLDESKRLMRDYPYLAGFLRAVRAENADQTGGGRRT 122 Query 204 NDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQRMATI 263 +A R+ + V+DA RG L+A + + + + + G+ +G T+ Sbjct 123 YPGSKALRDVITEIVDDARGRGVLSAGIAPGAAVDAICALTRGLTEQAANLGPQSYDVTL 182 Query 264 TDSFQQLLAGTLW 276 DS +QLL G+L+ Sbjct 183 -DSAKQLLRGSLF 194 >gi|345047900|gb|EGW51752.1| hypothetical protein HMPREF1022_01293 [Desulfovibrio sp. 6_1_46AFAA] Length=200 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/163 (28%), Positives = 84/163 (52%), Gaps = 10/163 (6%) Query 89 TRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI 148 TR+++L AA + F+E+GY G + +IA RAD+ + + +F +K L++ ++E+ H Sbjct 11 TREKVLAAAARCFAEKGYSGCSISDIAQRADIAQGTMYVHFKSKDALFKVMIEEEH---- 66 Query 149 VAGIERARRE----PTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTEN 204 G E+ARR P L G + V+ D D +P + + R+P + T Sbjct 67 AQGAEKARRASNVTPYLNGIIGVMTDCIR--DVGFPVDHRLWTEILAVAARNPAVRETFA 124 Query 205 DAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 RA R V + A + GE+ +++D+ +++ L ++ G+ Sbjct 125 TGDRAMRRVFVELLRKAAKAGEIDSNLDLEAVSVWLYALVDGL 167 >gi|167645017|ref|YP_001682680.1| TetR family transcriptional regulator [Caulobacter sp. K31] gi|167347447|gb|ABZ70182.1| transcriptional regulator, TetR family [Caulobacter sp. K31] Length=215 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/201 (29%), Positives = 99/201 (50%), Gaps = 32/201 (15%) Query 89 TRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI 148 TR+R+L AAR++F ERGY+GAT ++IA A ++ A+ F++K L+ E++ +E VI Sbjct 28 TRERVLSAARRLFIERGYEGATIRDIAQAAGMSTGAVFASFSDKNELFDEILTADYE-VI 86 Query 149 VAGIERARR-----EPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTE 203 A ++ A E ++G AV F ++ Q P A +A + S+ +R Sbjct 87 YAQMKLASTTATTVEEGVIGMFAVAYGFHVD---QLPLLQASIAVSWTRSETAERRNRGH 143 Query 204 NDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVGFYIGFVGSYQR---- 259 ++ L + +ERGEL + DV LAE + V +V +Y+R Sbjct 144 ---LKHIFNLLNGVLTRGVERGELKSSADVKLLAEIIWDV---------YVANYRRAIFD 191 Query 260 -------MATITDSFQQLLAG 273 ++ ++D + +LAG Sbjct 192 AWTVEALLSRLSDQLKVILAG 212 >gi|183980271|ref|YP_001848562.1| TetR family transcriptional regulator [Mycobacterium marinum M] gi|183173597|gb|ACC38707.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium marinum M] Length=209 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/179 (31%), Positives = 83/179 (47%), Gaps = 16/179 (8%) Query 79 GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQE 138 GRP A +ETR+RI+ A Q S+ GY AT +EIA A++T ++ +YF NK L +E Sbjct 7 GRPVGASGEETRQRIIVATMQCVSKVGYARATIREIARTANVTSASLYNYFPNKSELIKE 66 Query 139 VVEQTHELVIVAGIERARREP----TLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQ 194 + + A + R RR ++ R+ V+D E +YP AF + ++ Sbjct 67 TIAARAD----AAMPRLRRAAEGGGNIVDRIEAVLDECGELIREYPQLAAF--EFAIRAE 120 Query 195 RHPELSRTEND------AVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 L E A RE + V DA RGELA D + E + ++ G+ Sbjct 121 DGIALDAQEGSGQLGEVGFTAFREIIRGLVEDARRRGELAEQADTAGAIEAIYALIYGL 179 >gi|303327103|ref|ZP_07357545.1| putative transcriptional regulator, TetR family [Desulfovibrio sp. 3_1_syn3] gi|302863091|gb|EFL86023.1| putative transcriptional regulator, TetR family [Desulfovibrio sp. 3_1_syn3] Length=211 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/163 (28%), Positives = 84/163 (52%), Gaps = 10/163 (6%) Query 89 TRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI 148 TR+++L AA + F+E+GY G + +IA RAD+ + + +F +K L++ ++E+ H Sbjct 22 TREKVLAAAARCFAEKGYSGCSISDIAQRADIAQGTMYVHFKSKDALFKVMIEEEH---- 77 Query 149 VAGIERARRE----PTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPELSRTEN 204 G E+ARR P L G + V+ D D +P + + R+P + T Sbjct 78 AQGAEKARRASNVTPYLNGIIGVMTDCIR--DVGFPVDHRLWTEILAVAARNPAVRETFA 135 Query 205 DAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 RA R V + A + GE+ +++D+ +++ L ++ G+ Sbjct 136 TGDRAMRRVFVELLRKAAKAGEIDSNLDLEAVSVWLYALVDGL 178 >gi|289627418|ref|ZP_06460372.1| TetR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646141|ref|ZP_06477484.1| TetR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866712|gb|EGH01421.1| TetR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length=216 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/174 (32%), Positives = 88/174 (51%), Gaps = 7/174 (4%) Query 77 GPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLY 136 P R A K D RK +L AA VF+ GY A+ +E+A+ A +T + H+F NK L Sbjct 15 APKRRRAPKGDMRRKALLDAATVVFARDGYSSASMREVALLAGITTVGLLHHFPNKEALL 74 Query 137 QEVVEQTHELVIVAGIERARREPTLMGRLAVV---VDFAMEADAQYPASTAFLATTVLES 193 ++E+ + V + + EPTL G L + + F++E + A A L T S Sbjct 75 AALLERRDQRV-TSRFQDLVTEPTLDGFLKFLKLSMSFSIENADECQA--ALLMNTESLS 131 Query 194 QRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 + HP + + + T E ++ IE GE+ AD++V +LA+ + V+ G+ Sbjct 132 KSHPACT-WHRERFQLTHEHARGHLHALIEAGEVRADINVKALAQEIFSVMDGL 184 >gi|339504720|ref|YP_004692140.1| HTH-type TetR family transcriptional regulator [Roseobacter litoralis Och 149] gi|338758713|gb|AEI95177.1| putative HTH-type transcriptional regulator, TetR family [Roseobacter litoralis Och 149] Length=241 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/72 (39%), Positives = 48/72 (67%), Gaps = 0/72 (0%) Query 76 RGPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVL 135 R PGRP ++++TR+RIL AA +F++RGYDG + +++A +A L +I ++F K L Sbjct 25 RKPGRPKGGRSEQTRERILDAAEHLFADRGYDGTSIRDVAAKAGLQLHSIGYHFGPKESL 84 Query 136 YQEVVEQTHELV 147 + VV + E++ Sbjct 85 FDTVVGRRAEIM 96 >gi|257485177|ref|ZP_05639218.1| TetR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987366|gb|EGH85469.1| TetR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length=216 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/174 (32%), Positives = 88/174 (51%), Gaps = 7/174 (4%) Query 77 GPGRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLY 136 P R A K D RK +L AA VF+ GY A+ +E+A+ A +T + H+F NK L Sbjct 15 APKRRRAPKGDMRRKALLDAATVVFARDGYSSASMREVALLAGITTVGLLHHFPNKEALL 74 Query 137 QEVVEQTHELVIVAGIERARREPTLMGRLAVV---VDFAMEADAQYPASTAFLATTVLES 193 ++E+ + V + + EPTL G L + + F++E + A A L T S Sbjct 75 AALLERRDQRV-TSRFQDLVTEPTLEGFLKFLKLSMSFSIENADECQA--ALLMNTESLS 131 Query 194 QRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 + HP + + + T E ++ IE GE+ AD++V +LA+ + V+ G+ Sbjct 132 KSHPAWT-WHRERFQLTHEHARGHLHALIEAGEVRADINVKALAQEIFSVMDGL 184 >gi|111222452|ref|YP_713246.1| hypothetical protein FRAAL3035 [Frankia alni ACN14a] gi|111149984|emb|CAJ61679.1| hypothetical protein FRAAL3035 [Frankia alni ACN14a] Length=207 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/170 (34%), Positives = 83/170 (49%), Gaps = 2/170 (1%) Query 79 GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQE 138 GRP A A+ TR+RIL AA +E GY AT + IA +ADLT AI YF +K L + Sbjct 8 GRPVNADAERTRRRILLAAMTHVAEVGYSRATMKSIAEQADLTSAAIYRYFPSKADLVLQ 67 Query 139 VVEQTHELVIVAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPE 198 ++ V+ A L RL +++ A+ A +P+ T F A+ + ES PE Sbjct 68 ALDDVFADVVGRLEAAAFSVEGLRARLVALLEEALACMADHPSMTRFEASLLFESTHSPE 127 Query 199 LSRTENDAVRATREFLV-WAVNDAIERGELAADVDVSSLAETLLVVLCGV 247 + R T E L V +A++ GEL V ++ + L V G+ Sbjct 128 FAAAVG-YRRHTEETLYRRLVVEAVDTGELPVGTSVEAMVDLLTSVSWGL 176 >gi|118619912|ref|YP_908244.1| TetR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118572022|gb|ABL06773.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium ulcerans Agy99] Length=209 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/183 (32%), Positives = 86/183 (47%), Gaps = 24/183 (13%) Query 79 GRPPAAKADETRKRILHAARQVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQE 138 GRP A +ETR+RI+ A Q S+ GY AT +EIA A++T ++ +YF NK L +E Sbjct 7 GRPVGASGEETRQRIIVATMQCVSKVGYARATIREIARTANVTSASLYNYFPNKSELIKE 66 Query 139 VVEQTHELVIVAGIERARREP----TLMGRLAVVVDFAMEADAQYPASTAF--------- 185 + + A + R RR ++ R+ V+D E +YP AF Sbjct 67 TIAARAD----AAMPRLRRAAEGGGNIVDRIEAVLDECGELIREYPQLAAFEFAIRAEDG 122 Query 186 LATTVLE-SQRHPELSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVL 244 +A E S + E+ T A RE + V DA RGELA D + E + ++ Sbjct 123 IAVDAQEGSGQLGEVGFT------AFREIIRGLVEDARRRGELAEQADTAGAIEAIYALI 176 Query 245 CGV 247 G+ Sbjct 177 YGL 179 Lambda K H 0.320 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 442782057568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40