BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0151c Length=588 Score E Sequences producing significant alignments: (Bits) Value gi|57116694|ref|YP_177695.1| PE family protein [Mycobacterium tu... 1152 0.0 gi|253797071|ref|YP_003030072.1| PE family protein [Mycobacteriu... 1150 0.0 gi|15839533|ref|NP_334570.1| PE family protein [Mycobacterium tu... 1150 0.0 gi|306805944|ref|ZP_07442612.1| PE family protein [Mycobacterium... 1149 0.0 gi|31791329|ref|NP_853822.1| PE family protein [Mycobacterium bo... 1149 0.0 gi|289572730|ref|ZP_06452957.1| PE family protein [Mycobacterium... 1148 0.0 gi|308231479|ref|ZP_07412575.2| PE family protein [Mycobacterium... 1087 0.0 gi|308369315|ref|ZP_07417319.2| PE family protein [Mycobacterium... 1085 0.0 gi|340625187|ref|YP_004743639.1| PE family protein [Mycobacteriu... 1030 0.0 gi|183980403|ref|YP_001848694.1| PE family protein [Mycobacteriu... 723 0.0 gi|240168158|ref|ZP_04746817.1| PE family protein [Mycobacterium... 696 0.0 gi|183980401|ref|YP_001848692.1| PE family protein [Mycobacteriu... 524 1e-146 gi|183983416|ref|YP_001851707.1| PE family protein [Mycobacteriu... 488 1e-135 gi|340625188|ref|YP_004743640.1| pe family protein [Mycobacteriu... 478 2e-132 gi|183984291|ref|YP_001852582.1| PE family protein [Mycobacteriu... 437 2e-120 gi|118616727|ref|YP_905059.1| PE family protein [Mycobacterium u... 407 2e-111 gi|183983451|ref|YP_001851742.1| PE family protein [Mycobacteriu... 406 6e-111 gi|289764268|ref|ZP_06523646.1| PE family protein [Mycobacterium... 405 1e-110 gi|148821344|ref|YP_001286098.1| PE family protein [Mycobacteriu... 404 2e-110 gi|240168157|ref|ZP_04746816.1| PE family protein [Mycobacterium... 404 2e-110 gi|31791330|ref|NP_853823.1| PE family protein [Mycobacterium bo... 404 2e-110 gi|15839534|ref|NP_334571.1| PE family protein [Mycobacterium tu... 404 2e-110 gi|289441524|ref|ZP_06431268.1| LOW QUALITY PROTEIN: PE family p... 404 3e-110 gi|254549087|ref|ZP_05139534.1| PE family protein [Mycobacterium... 403 4e-110 gi|167970270|ref|ZP_02552547.1| PE family protein [Mycobacterium... 402 6e-110 gi|339293217|gb|AEJ45328.1| PE family protein [Mycobacterium tub... 401 2e-109 gi|183980402|ref|YP_001848693.1| PE family protein [Mycobacteriu... 398 1e-108 gi|183981048|ref|YP_001849339.1| PPE family protein [Mycobacteri... 376 5e-102 gi|240173252|ref|ZP_04751910.1| PPE family protein [Mycobacteriu... 375 1e-101 gi|183983956|ref|YP_001852247.1| PPE family protein [Mycobacteri... 373 6e-101 gi|289574477|ref|ZP_06454704.1| PPE family protein [Mycobacteriu... 370 3e-100 gi|15841269|ref|NP_336306.1| PPE family protein [Mycobacterium t... 370 4e-100 gi|57116915|ref|YP_177839.1| PPE family protein [Mycobacterium t... 369 9e-100 gi|31792988|ref|NP_855481.1| PPE family protein [Mycobacterium b... 369 1e-99 gi|289443272|ref|ZP_06433016.1| PPE family protein [Mycobacteriu... 369 1e-99 gi|121637701|ref|YP_977924.1| PPE family protein [Mycobacterium ... 368 2e-99 gi|307084416|ref|ZP_07493529.1| PE-PPE domain protein [Mycobacte... 365 1e-98 gi|308231943|ref|ZP_07663959.1| PPE family protein [Mycobacteriu... 363 4e-98 gi|289569870|ref|ZP_06450097.1| PPE family protein [Mycobacteriu... 362 7e-98 gi|183980400|ref|YP_001848691.1| PE family protein [Mycobacteriu... 360 5e-97 gi|183981512|ref|YP_001849803.1| PPE family protein, PPE28 [Myco... 351 2e-94 gi|118617931|ref|YP_906263.1| PPE family protein [Mycobacterium ... 347 3e-93 gi|240168156|ref|ZP_04746815.1| PE family protein [Mycobacterium... 327 4e-87 gi|333989608|ref|YP_004522222.1| PE family protein [Mycobacteriu... 322 2e-85 gi|183980414|ref|YP_001848705.1| PE family protein [Mycobacteriu... 320 4e-85 gi|240168595|ref|ZP_04747254.1| PPE family protein, PPE28 [Mycob... 317 5e-84 gi|240168169|ref|ZP_04746828.1| PE family protein [Mycobacterium... 315 2e-83 gi|183980415|ref|YP_001848706.1| PE family protein, PE4 [Mycobac... 311 3e-82 gi|340626444|ref|YP_004744896.1| PE family protein [Mycobacteriu... 311 3e-82 gi|15840887|ref|NP_335924.1| PE family protein [Mycobacterium tu... 310 4e-82 >gi|57116694|ref|YP_177695.1| PE family protein [Mycobacterium tuberculosis H37Rv] gi|148659915|ref|YP_001281438.1| PE family protein [Mycobacterium tuberculosis H37Ra] gi|148821343|ref|YP_001286097.1| PE family protein [Mycobacterium tuberculosis F11] 25 more sequence titles Length=588 Score = 1152 bits (2979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 588/588 (100%), Positives = 588/588 (100%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA Sbjct 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 >gi|253797071|ref|YP_003030072.1| PE family protein [Mycobacterium tuberculosis KZN 1435] gi|289552402|ref|ZP_06441612.1| PE family protein [Mycobacterium tuberculosis KZN 605] gi|297632625|ref|ZP_06950405.1| PE family protein [Mycobacterium tuberculosis KZN 4207] 6 more sequence titles Length=588 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/588 (99%), Positives = 587/588 (99%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 AA AFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA Sbjct 121 AAKAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 >gi|15839533|ref|NP_334570.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|254233542|ref|ZP_04926868.1| PE family protein [Mycobacterium tuberculosis C] gi|254366603|ref|ZP_04982647.1| PE family protein [Mycobacterium tuberculosis str. Haarlem] gi|13879644|gb|AAK44384.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|124603335|gb|EAY61610.1| PE family protein [Mycobacterium tuberculosis C] gi|134152115|gb|EBA44160.1| PE family protein [Mycobacterium tuberculosis str. Haarlem] gi|323717137|gb|EGB26346.1| PE family protein [Mycobacterium tuberculosis CDC1551A] Length=588 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/588 (99%), Positives = 587/588 (99%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 A NAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA Sbjct 121 ATNAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIA+VVTLADITQQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAVVVTLADITQQLQSFSI 588 >gi|306805944|ref|ZP_07442612.1| PE family protein [Mycobacterium tuberculosis SUMu007] gi|306970340|ref|ZP_07483001.1| PE family protein [Mycobacterium tuberculosis SUMu009] gi|308347554|gb|EFP36405.1| PE family protein [Mycobacterium tuberculosis SUMu007] gi|308352180|gb|EFP41031.1| PE family protein [Mycobacterium tuberculosis SUMu009] Length=588 Score = 1149 bits (2973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/588 (99%), Positives = 587/588 (99%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA Sbjct 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSD NAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDSNAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 >gi|31791329|ref|NP_853822.1| PE family protein [Mycobacterium bovis AF2122/97] gi|121636063|ref|YP_976286.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988536|ref|YP_002643223.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31616914|emb|CAD93020.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97] gi|121491710|emb|CAL70171.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771649|dbj|BAH24455.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341600079|emb|CCC62748.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=588 Score = 1149 bits (2973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/588 (99%), Positives = 587/588 (99%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 MAPFGFTPKARHNRGVALRSTYRLD WVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MAPFGFTPKARHNRGVALRSTYRLDRWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA Sbjct 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 >gi|289572730|ref|ZP_06452957.1| PE family protein [Mycobacterium tuberculosis K85] gi|339630233|ref|YP_004721875.1| PE family protein [Mycobacterium africanum GM041182] gi|289537161|gb|EFD41739.1| PE family protein [Mycobacterium tuberculosis K85] gi|339329589|emb|CCC25225.1| PE family protein [Mycobacterium africanum GM041182] Length=588 Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/588 (99%), Positives = 587/588 (99%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA Sbjct 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPTLLPPPPPPQ ATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTLLPPPPPPQLATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 >gi|308231479|ref|ZP_07412575.2| PE family protein [Mycobacterium tuberculosis SUMu001] gi|308379707|ref|ZP_07487233.2| PE family protein [Mycobacterium tuberculosis SUMu010] gi|308380909|ref|ZP_07491451.2| PE family protein [Mycobacterium tuberculosis SUMu011] 7 more sequence titles Length=560 Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/560 (100%), Positives = 560/560 (100%), Gaps = 0/560 (0%) Query 29 MGPVDKEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTA 88 MGPVDKEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTA Sbjct 1 MGPVDKEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTA 60 Query 89 LATLFGAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPT 148 LATLFGAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPT Sbjct 61 LATLFGAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPT 120 Query 149 SPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPIT 208 SPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPIT Sbjct 121 SPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPIT 180 Query 209 GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPS 268 GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPS Sbjct 181 GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPS 240 Query 269 PSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFP 328 PSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFP Sbjct 241 PSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFP 300 Query 329 RYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAP 388 RYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAP Sbjct 301 RYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAP 360 Query 389 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL 448 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL Sbjct 361 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL 420 Query 449 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV 508 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV Sbjct 421 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV 480 Query 509 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE 568 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE Sbjct 481 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE 540 Query 569 FIAIVVTLADITQQLQSFSI 588 FIAIVVTLADITQQLQSFSI Sbjct 541 FIAIVVTLADITQQLQSFSI 560 >gi|308369315|ref|ZP_07417319.2| PE family protein [Mycobacterium tuberculosis SUMu002] gi|308370327|ref|ZP_07421092.2| PE family protein [Mycobacterium tuberculosis SUMu003] gi|308371602|ref|ZP_07425459.2| PE family protein [Mycobacterium tuberculosis SUMu004] 9 more sequence titles Length=560 Score = 1085 bits (2807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/560 (99%), Positives = 559/560 (99%), Gaps = 0/560 (0%) Query 29 MGPVDKEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTA 88 MGPVDKEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTA Sbjct 1 MGPVDKEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTA 60 Query 89 LATLFGAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPT 148 LATLFGAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPT Sbjct 61 LATLFGAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPT 120 Query 149 SPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPIT 208 SPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPIT Sbjct 121 SPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPIT 180 Query 209 GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPS 268 GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPS Sbjct 181 GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPS 240 Query 269 PSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFP 328 PSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFP Sbjct 241 PSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFP 300 Query 329 RYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAP 388 RYPLNVLSD NAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAP Sbjct 301 RYPLNVLSDSNAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAP 360 Query 389 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL 448 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL Sbjct 361 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL 420 Query 449 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV 508 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV Sbjct 421 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV 480 Query 509 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE 568 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE Sbjct 481 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE 540 Query 569 FIAIVVTLADITQQLQSFSI 588 FIAIVVTLADITQQLQSFSI Sbjct 541 FIAIVVTLADITQQLQSFSI 560 >gi|340625187|ref|YP_004743639.1| PE family protein [Mycobacterium canettii CIPT 140010059] gi|340003377|emb|CCC42497.1| PE family protein [Mycobacterium canettii CIPT 140010059] Length=588 Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/588 (98%), Positives = 581/588 (99%), Gaps = 0/588 (0%) Query 1 MAPFGFTPKARHNRGVALRSTYRLDGWVMGPVDKEGWGLSYVFAQPSVLAAAATDLAGIG 60 M P GF+PKARHNRGVALRSTYRLDGWVMGPV KEG GLSYVFAQPSVLAAAATDLAGIG Sbjct 1 MPPSGFSPKARHNRGVALRSTYRLDGWVMGPVGKEGSGLSYVFAQPSVLAAAATDLAGIG 60 Query 61 SAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 SAINQATAA AAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA Sbjct 61 SAINQATAAAAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQVAAFHNEFTQRLAA 120 Query 121 AANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYVNA 180 AANAFVNAEATNT+ALV EATAGLF+PTSPPVLPPMFNQNTAIIMGGTGSPIPTPSY+NA Sbjct 121 AANAFVNAEATNTTALVHEATAGLFRPTSPPVLPPMFNQNTAIIMGGTGSPIPTPSYLNA 180 Query 181 ITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 ITTLFIDPVVSNPV+KALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV Sbjct 181 ITTLFIDPVVSNPVIKALVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHV 240 Query 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG Sbjct 241 TVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLG 300 Query 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA Sbjct 301 LPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIA 360 Query 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF Sbjct 361 SATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRF 420 Query 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP Sbjct 421 GYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPP 480 Query 481 YVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 YVPT+LPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ Sbjct 481 YVPTVLPPPPPPQPATLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQ 540 Query 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQSFSI 588 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADI QQLQSFSI Sbjct 541 LAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADIIQQLQSFSI 588 >gi|183980403|ref|YP_001848694.1| PE family protein [Mycobacterium marinum M] gi|183173729|gb|ACC38839.1| PE family protein [Mycobacterium marinum M] Length=550 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/548 (73%), Positives = 459/548 (84%), Gaps = 0/548 (0%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +SYV AQP +AAAAT+L GIGSA+++ATAA A PTT + +AAADEVSTA+A L G +G Sbjct 1 MSYVVAQPPAIAAAATELTGIGSALSEATAAAAGPTTAILSAAADEVSTAIAQLLGTFGA 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 ++Q IS Q+AAFH + QRLA AN ++NAE N +AL++EATAGL+ P SPP +P +FN Sbjct 61 EYQGISTQLAAFHAQIAQRLATVANYYINAEEINNAALLEEATAGLYSPNSPPTVPAVFN 120 Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 AI MGGTG+PIP+ SY++A+ TL+I + + KAL TPE+LYPITGVKSLPFQTS Sbjct 121 DYVAIAMGGTGTPIPSTSYLDAVNTLYIQHIAPGAIAKALFTPEQLYPITGVKSLPFQTS 180 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIG 278 VQ GL+ILD +IW +INAGNHVTVFGYSQSAVIASLEMQH ISLGPNAP PSQ+NFIL G Sbjct 181 VQEGLKILDISIWNEINAGNHVTVFGYSQSAVIASLEMQHFISLGPNAPDPSQINFILTG 240 Query 279 NEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDI 338 NEMNPNGGILARIPGLNV +LGLPFYGATPDNPY TTTYTLEYDGFADFPRYPLNVLSD+ Sbjct 241 NEMNPNGGILARIPGLNVASLGLPFYGATPDNPYYTTTYTLEYDGFADFPRYPLNVLSDV 300 Query 339 NAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPP 398 NAVFGILTVH TY DLTP QIASAT LPT+G T+ TYY+I TE+LPLL P+RAIPVIG P Sbjct 301 NAVFGILTVHRTYPDLTPEQIASATLLPTEGPTTGTYYMIRTENLPLLDPVRAIPVIGEP 360 Query 399 LAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVND 458 LAALV+P+L+V+VNLGYGDP +GYSTSPANVPTPFGLFPDV VVADALVAGT QG+ND Sbjct 361 LAALVQPDLKVLVNLGYGDPNYGYSTSPANVPTPFGLFPDVSLQVVADALVAGTHQGIND 420 Query 459 FMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPT 518 F LP AL+T PQ FPPYV ++LPP PPP PAT INIA+T ASVVSTGYS+LLPT Sbjct 421 FGAALPTALSTTPQIAPLEFPPYVQSVLPPAPPPMPATPINIANTLASVVSTGYSVLLPT 480 Query 519 ADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLAD 578 AD+GL FVT LPAY+LTLF++QLA G+LRAAIELPLAAT GL ALGGMIEFIA++ A+ Sbjct 481 ADIGLGFVTSLPAYNLTLFLSQLAQGDLRAAIELPLAATFGLGALGGMIEFIAVMEAAAE 540 Query 579 ITQQLQSF 586 I Q LQS Sbjct 541 IAQDLQSL 548 >gi|240168158|ref|ZP_04746817.1| PE family protein [Mycobacterium kansasii ATCC 12478] Length=546 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/549 (73%), Positives = 454/549 (83%), Gaps = 4/549 (0%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +SYV QP +AAAAT+LAGIG+AI++A A+VA PTT +A AAADEVS A+A LFGA+GQ Sbjct 1 MSYVLTQPPAMAAAATELAGIGTAISEAAASVAGPTTTIATAAADEVSAAIAQLFGAFGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 ++QAI+AQ+ A +N+FTQ LAAAANA+ EA + + LV+ AT GLF PTSPPV+PP F Sbjct 61 EYQAINAQLGALYNQFTQNLAAAANAYFGDEAISAATLVKGATTGLFTPTSPPVVPPAFG 120 Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 QNTAI+M GTGSPIP+ YV AIT LF+ P + VV L T EELYPITGVKSLPFQ S Sbjct 121 QNTAIVMSGTGSPIPSIQYVAAITNLFLPPGM---VVNPLNTIEELYPITGVKSLPFQNS 177 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIG 278 VQ GLQILD AIWEQI+AGNHVTVFGYSQSAVI+SLE+Q L+SLGPN P PSQL+FI IG Sbjct 178 VQTGLQILDAAIWEQIHAGNHVTVFGYSQSAVISSLEIQQLLSLGPNKPDPSQLSFIFIG 237 Query 279 NEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDI 338 NEMNPNGGIL+RIPGLN++TLGLPFYGAT DNPYPTTTYTLEYDGFADFPRYPLNVLSDI Sbjct 238 NEMNPNGGILSRIPGLNISTLGLPFYGATADNPYPTTTYTLEYDGFADFPRYPLNVLSDI 297 Query 339 NAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPP 398 NAVFGI+TVHT Y LTP Q+A+A LPT+G TSN Y+II T HLPLL P+RAIPVIGPP Sbjct 298 NAVFGIITVHTQYQYLTPQQVANAILLPTEGVTSNQYFIIPTAHLPLLDPVRAIPVIGPP 357 Query 399 LAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVND 458 LAAL+EP+L V+VNLGYGDPRFGYSTSPANVPTPFGLFPDVP V+ DALVAGT QG+ND Sbjct 358 LAALIEPDLRVLVNLGYGDPRFGYSTSPANVPTPFGLFPDVPPGVIVDALVAGTHQGIND 417 Query 459 FMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVSTGYSILLPT 518 F L A P+ P+ FPPY+ +LPP P P PAT NIA TFA+VVS YS+LLPT Sbjct 418 FAAAL-PAALNPPELPVIGFPPYIQQILPPSPGPVPATPANIASTFAAVVSDSYSLLLPT 476 Query 519 ADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLAD 578 ADLGLAF TILPAYDL+LF+NQL GN AAIELPLAAT GLAALG MIEFIAIV T+A Sbjct 477 ADLGLAFATILPAYDLSLFLNQLLHGNFIAAIELPLAATAGLAALGAMIEFIAIVRTVAA 536 Query 579 ITQQLQSFS 587 I QQLQS + Sbjct 537 IIQQLQSLN 545 >gi|183980401|ref|YP_001848692.1| PE family protein [Mycobacterium marinum M] gi|183173727|gb|ACC38837.1| PE family protein [Mycobacterium marinum M] Length=550 Score = 524 bits (1350), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 302/567 (54%), Positives = 376/567 (67%), Gaps = 38/567 (6%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +SY+ A+P +LA+ AT++ GIGSAI+ A A A PT+ L AAA DEVS A+A LF YG+ Sbjct 1 MSYLLAEPELLASVATEIDGIGSAISTAGTAAAGPTSSLLAAAGDEVSGAIANLFSVYGR 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPP----VLP 154 + QA+ AQV AF +EF Q LAAA A+ EA + +AL G+ +P Sbjct 61 ECQAVLAQVEAFRSEFAQTLAAAGVAYAQTEAASLAAL--RGALGIPSAAPAVSSASTIP 118 Query 155 PMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLP 214 P T++ +G TG PIP SYV A LF V S+ +++ L TPEELYP+TGVKSL Sbjct 119 PFTANLTSLFLGPTGVPIPDESYVQAANNLF---VRSSDILRPLYTPEELYPLTGVKSLT 175 Query 215 FQTSVQLGLQILDGAIWEQINA-GNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLN 273 SV+ GL ILD AI Q++ GN VTVFGYSQSA+IASLEMQ L +LGP+AP+ SQLN Sbjct 176 LNASVEEGLTILDNAIMAQLSIPGNSVTVFGYSQSAIIASLEMQKLAALGPSAPTASQLN 235 Query 274 FILIGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPL 332 F+L+GNEMNPNGG+LAR P L++ +LGL FYGATP D YPT YTLEYDGFADFPRYPL Sbjct 236 FVLVGNEMNPNGGMLARFPDLSLPSLGLTFYGATPSDTIYPTAIYTLEYDGFADFPRYPL 295 Query 333 NVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ----GTTSNTYYIIETEHLPLLAP 388 N ++D+NAV GI VH Y DLT AQ+ SA +LPT G TS YY+I TE+LPLL P Sbjct 296 NFIADLNAVMGIPFVHVKYLDLTAAQVDSAIELPTSPGYSGVTS--YYVIPTENLPLLEP 353 Query 389 LRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADAL 448 LRAIPVIG PLA L++P+L+VIVNLGYGDP +GYSTS A+V TPFGLFPDV + DAL Sbjct 354 LRAIPVIGNPLANLIQPDLKVIVNLGYGDPNYGYSTSYADVRTPFGLFPDVSPGTIVDAL 413 Query 449 VAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPP---------PQPATLIN 499 AGTQ+G+ DF +L A P+P P ++PP P P PA ++N Sbjct 414 AAGTQEGIQDFTADLQAMFG----QPIP-----TPDIVPPTPADILGKLSELPSPAQVVN 464 Query 500 IADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIG 559 T +VV+ Y++LLPTAD+GLA VT LP Y LF +QL GNL A P+AAT+G Sbjct 465 ---TLTAVVANDYAVLLPTADIGLAVVTTLPLYSTQLFFDQLLQGNLIDAFGYPIAATVG 521 Query 560 LAALGGMIEFIAIVVTLADITQQLQSF 586 L +GG +EF+ I Q + S Sbjct 522 LLTIGGAVEFLTIAAAAQTTVQDIGSL 548 >gi|183983416|ref|YP_001851707.1| PE family protein [Mycobacterium marinum M] gi|183176742|gb|ACC41852.1| PE family protein [Mycobacterium marinum M] Length=549 Score = 488 bits (1257), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 296/558 (54%), Positives = 368/558 (66%), Gaps = 21/558 (3%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 ++++ A+P V+A A + IGSAI A A +G+AAAA DEVS A+A+ F A+GQ Sbjct 1 MAFLVAEPQVMATVAGQVEEIGSAIGVANEFAAGSISGVAAAAGDEVSAAIASFFAAHGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 +QA++ QV AFH EF Q LA A NA+V AEA +AL +P P F Sbjct 61 AYQAVAGQVEAFHTEFQQALAQAGNAYVQAEAAGAAALAGALGVPATSAAAPAATIPPFP 120 Query 159 QN-TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQT 217 N T ++MGGTG PIP P ++N L+ V S + L TPEELYP+TG KSL Sbjct 121 ANLTTLVMGGTGIPIPGPGFINLANELY---VRSANALLGLNTPEELYPLTGTKSLTLDA 177 Query 218 SVQLGLQILDGAIWEQINA-GNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV GL ILD AI EQ+ GN VTVFG SQSAVIASLEMQ L +LGP AP+ SQLNF+L Sbjct 178 SVSEGLTILDNAIMEQLAIPGNTVTVFGVSQSAVIASLEMQKLAALGPAAPTASQLNFVL 237 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L++ +LGL FYG TP D YPT YTLEYDGFADFPRYPLN + Sbjct 238 LGNEMNPNGGLLARFPDLSIPSLGLTFYGGTPSDTIYPTANYTLEYDGFADFPRYPLNFI 297 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ----GTTSNTYYIIETEHLPLLAPLRA 391 SD+NAV GI+ VH TY DLT AQ+ +A L T G TS YYI+ TE+LPLL PLRA Sbjct 298 SDLNAVMGIVYVHPTYLDLTQAQVDNAIPLATSPGYSGVTS--YYILPTENLPLLEPLRA 355 Query 392 IPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAG 451 IPVIG PLA L++P+L+V+VNLGYGDP +GYSTSPA++ TPFGLFPDVP V+ADALVAG Sbjct 356 IPVIGNPLANLIQPDLKVLVNLGYGDPAYGYSTSPADITTPFGLFPDVPPHVIADALVAG 415 Query 452 TQQGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVV 508 T+QG++DF ++ + TLP PM P + L P P + + +T +V Sbjct 416 TKQGISDFSADIQQMFSQPATLPSPPMLQAPDLMAALAAAPTP------VEVVNTLTKIV 469 Query 509 STGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIE 568 S Y+ LLP AD+G AFV +P YD TLFV+QL GNL A P+AA +GL A+ G + Sbjct 470 SDDYATLLPLADIGTAFVITMPTYDATLFVDQLLQGNLINAFGYPIAADVGLTAISGGVV 529 Query 569 FIAIVVTLADITQQLQSF 586 + + TL + LQS Sbjct 530 ALVAIGTLQSNIKDLQSL 547 >gi|340625188|ref|YP_004743640.1| pe family protein [Mycobacterium canettii CIPT 140010059] gi|340003378|emb|CCC42498.1| pe family protein [Mycobacterium canettii CIPT 140010059] Length=550 Score = 478 bits (1229), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 305/557 (55%), Positives = 385/557 (70%), Gaps = 18/557 (3%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +SY+ A+P ++AAAA ++AGIGSA++ A+AA A PT+ LAAAA DEVS A+A LFGAYGQ Sbjct 1 MSYLIAEPRIVAAAAAEVAGIGSAVSTASAAAAGPTSALAAAAGDEVSAAIAKLFGAYGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 ++QA+ AQV AFH+ F Q LAAAA+ + +AEA S L + PT Sbjct 61 EYQAVLAQVEAFHSRFHQTLAAAAHTYADAEAAIASTLQNQLAVPAAAPTPAAAAMVPPF 120 Query 159 QN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQ 216 T + G TG P+P PSYV+A L+ V S ++A+ TPEELYP+TGV+SL Sbjct 121 PANLTTLFFGPTGIPLPPPSYVDAANMLY---VRSAGALQAVFTPEELYPLTGVRSLVLN 177 Query 217 TSVQLGLQILDGAIWEQINA-GNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFI 275 TSV+ GL I+ AI ++ GN VTVFG+SQSA+IASLEM L ++GP AP S LNF+ Sbjct 178 TSVEEGLTIMHDAIMGELAIPGNTVTVFGWSQSAIIASLEMHRLAAMGPAAPPASDLNFV 237 Query 276 LIGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNV 334 L+GNEMNPNGG+LAR P L + +LGL FYGATP D YPT YTLEYDGFADFPRYPLN+ Sbjct 238 LVGNEMNPNGGMLARFPDLTLPSLGLTFYGATPSDTIYPTAIYTLEYDGFADFPRYPLNI 297 Query 335 LSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAI 392 +SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+LPLL PLRA+ Sbjct 298 ISDLNAVAGITFVHTKYLDLTPAQVDGATKLPTSPGYTGVTDYYIIRTENLPLLQPLRAV 357 Query 393 PVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGT 452 PVIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+PDVP V+ADAL AGT Sbjct 358 PVIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPDVPPQVIADALAAGT 417 Query 453 QQGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVS 509 QQG+ DF +L A TLPQ +P P + + P P+ + +T A ++S Sbjct 418 QQGILDFTADLQALSAQPLTLPQIQLPQ-PADLVAAVAAAPRPE-----EVVNTLARIIS 471 Query 510 TGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEF 569 T Y++LLPTAD+ LA VT LP Y LFV+QLAAGNL AI PLAAT+GL + G +E Sbjct 472 TNYAVLLPTADIALALVTTLPLYTTQLFVSQLAAGNLINAIGYPLAATVGLGTIAGGVEL 531 Query 570 IAIVVTLADITQQLQSF 586 + ++ +D + ++ Sbjct 532 LTLLAAASDTVRNIEGL 548 >gi|183984291|ref|YP_001852582.1| PE family protein [Mycobacterium marinum M] gi|183177617|gb|ACC42727.1| PE family protein [Mycobacterium marinum M] Length=588 Score = 437 bits (1125), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 280/583 (49%), Positives = 357/583 (62%), Gaps = 52/583 (8%) Query 42 VFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQ 101 + A P + A AT++A IG AINQA AVA PTTGLAAAAADEVS A+ATLF Y Q +Q Sbjct 4 LLASPQAMTATATEVAEIGLAINQADLAVAGPTTGLAAAAADEVSEAIATLFDNYAQGYQ 63 Query 102 AISAQVAAFHNEFTQRLAAAANAFVNAEATNTSAL--VQEATAGLFKP--TSPPVLP--- 154 A+S Q AAFH+ F Q L AA++++V AEA AL + E A LF P + P + Sbjct 64 AVSRQAAAFHDAFAQTLFAASDSYVRAEAAAVKALAGLTEPVANLFAPVLSGPESVAASA 123 Query 155 -------PMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVV-SNPVVKALVTPEELYP 206 P+ A+I+ +G P P+ SY++ + T +++P S + + TP LYP Sbjct 124 TALLSGAPLKPVEAALILSESGVPTPSASYISDVYTKYVEPNFPSATAPQGVSTPNGLYP 183 Query 207 ITGVKSLPFQTSVQLGLQILDGAIWEQINA---GNHVTVFGYSQSAVIASLEMQHLISLG 263 TG+K L S+ G IL+ AI +Q+ A G+ V V GYSQSAV++SL M L++ G Sbjct 184 FTGIKDLTLDISLARGATILNDAILQQLAALPAGSSVAVLGYSQSAVLSSLVMPKLLAEG 243 Query 264 PNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDG 323 + SQ+NF+L+GN MNPNGG+LAR P L + +LG FYGATPDN +PT +YTLEYDG Sbjct 244 VTS---SQVNFVLLGNPMNPNGGVLARFPDLTLPSLGFTFYGATPDNAFPTVSYTLEYDG 300 Query 324 FADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHL 383 FADFPRYP+N+L+DINAV GI VH Y LT AQ+ SA QLPT+G T +TYY+I TEHL Sbjct 301 FADFPRYPINLLADINAVMGIPFVHADYQHLTQAQLDSAVQLPTEGPTQSTYYMIPTEHL 360 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLLAPLR IP +G PLA L+EPNL V+VNLGYGDP +GY T PANVPTPFGLFP V Sbjct 361 PLLAPLRFIPYVGDPLAELLEPNLRVLVNLGYGDPAYGYDTGPANVPTPFGLFPPVSPLT 420 Query 444 VADALVAGTQQGVNDFMVELPAA------LNTLPQTPMPAFPPY--VPTLLPPPPPPQPA 495 VA+ L AGTQQG+ + L A L+ + T + A PP+ P L PP PA Sbjct 421 VAEHLAAGTQQGIVNSGAALQAQGPPSIPLSDIAHT-LTANPPWAGTPAL---PPSTSPA 476 Query 496 TLI------------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF------ 537 + I +I+ F +ST Y+ LLPT D+ V LP+Y+L LF Sbjct 477 SSIEDFILAVQAANSSISRGFVKTLSTAYATLLPTTDIASELVFTLPSYNLNLFLDGVIQ 536 Query 538 -VNQLAAGNLRAAIELPLAATIGLAALGGMIEFIAIVVTLADI 579 +N L AI P+AA+ GL L G + I I L I Sbjct 537 AINGQPIEGLINAIGNPIAASTGLITLAGGFQLIVISYALDTI 579 >gi|118616727|ref|YP_905059.1| PE family protein [Mycobacterium ulcerans Agy99] gi|118568837|gb|ABL03588.1| PE family protein [Mycobacterium ulcerans Agy99] Length=547 Score = 407 bits (1047), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 262/536 (49%), Positives = 338/536 (64%), Gaps = 45/536 (8%) Query 42 VFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQ 101 + A P + A AT++A IG AINQA AVA PTTGLAAAAA EVS A+ATLF Y Q +Q Sbjct 6 LLASPQAMTATATEVAEIGLAINQADLAVAGPTTGLAAAAAAEVSEAIATLFDNYAQGYQ 65 Query 102 AISAQVAAFHNEFTQRLAAAANAFVNAEATNTSAL--VQEATAGLFKP--TSPPVLP--- 154 A+S Q AAFH+ F Q L AA++++V AEA AL + E A LF P + P + Sbjct 66 AVSRQTAAFHDAFAQTLFAASDSYVRAEAAAVKALAGLTEPVANLFAPVLSGPESVAASA 125 Query 155 -------PMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVV-KALVTPEELYP 206 P+ A+I+ +G P P+ SY++ + T +++P + + + TP LYP Sbjct 126 TALLSGAPLKPVEAALILSESGVPTPSASYISDVYTKYVEPNFPSATAPQGVSTPNGLYP 185 Query 207 ITGVKSLPFQTSVQLGLQILDGAIWEQINA---GNHVTVFGYSQSAVIASLEMQHLISLG 263 TG+K L S+ G IL+ AI +Q+ A G+ V V GYSQSAV++S M L++ G Sbjct 186 FTGIKDLSLDISLARGATILNDAILQQLAALPAGSSVAVLGYSQSAVLSSRVMPKLLAEG 245 Query 264 PNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDG 323 + SQ+NF+L+GN MNPNGG+LAR P L + +LG FYGATPDN +PT +YTLEYDG Sbjct 246 VTS---SQVNFVLLGNPMNPNGGVLARFPDLTLPSLGFTFYGATPDNAFPTVSYTLEYDG 302 Query 324 FADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHL 383 FADFPRYP+N+L+DINAV GI VH Y DLT AQ+ SA QLPT+G T +TYY+I TEHL Sbjct 303 FADFPRYPINLLADINAVMGIPFVHADYQDLTQAQLDSAVQLPTEGPTQSTYYMIPTEHL 362 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLLAPLR IP +G PLA L+EPNL V+VN GYGDP +GY T PANVPTPFGLFP V Sbjct 363 PLLAPLRFIPYVGDPLAELLEPNLRVLVNFGYGDPAYGYDTGPANVPTPFGLFPPVSPLT 422 Query 444 VADALVAGTQQGVNDFMVELPAA------LNTLPQTPMPAFPPY--VPTLLPPPPPPQPA 495 VA+ L AGTQQG+ + L A L+ + T + A PP+ P L PP PA Sbjct 423 VAEHLAAGTQQGIVNSGAALQAQGPPSIPLSDIAHT-LTANPPWAGTPAL---PPSTSPA 478 Query 496 TLI------------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVN 539 + I +I+ F +ST Y+ LLPT D+ V LP+Y+L LF++ Sbjct 479 SSIEDFILAVQAANSSISRGFVKTLSTAYATLLPTTDIASELVFTLPSYNLNLFLD 534 >gi|183983451|ref|YP_001851742.1| PE family protein [Mycobacterium marinum M] gi|183176777|gb|ACC41887.1| PE family protein [Mycobacterium marinum M] Length=575 Score = 406 bits (1043), Expect = 6e-111, Method: Compositional matrix adjust. Identities = 263/575 (46%), Positives = 348/575 (61%), Gaps = 37/575 (6%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +S++ QP ++ AAA DL GI ++I +A+ AV TTGLAAAAADEVS A+A +F +G+ Sbjct 1 MSHLVTQPQLMTAAAEDLVGIQTSIAEASIAVGGRTTGLAAAAADEVSAAIADVFSVFGE 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 +QA + QV A+HN F Q L A+ANA+ +AEA + AL+ +TA +P + Sbjct 61 DYQAFARQVEAYHNAFVQTLTASANAYGHAEA-DAQALLSGSTAA--SGGAPSAQATLQG 117 Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPV-VKALVTPEELYPI-TGVKSLPFQ 216 ++GG+G+PIP+ +YVN + + P KAL TPE L PI TG+KSLP Sbjct 118 TTFGWMIGGSGNPIPSQTYVNKVLPYVNEAFGVLPENAKALFTPEGLQPIYTGIKSLPLN 177 Query 217 TSVQLGLQILDGAIWEQINA--GNHVTVFGYSQSAVIASLEMQHLIS--LGPNAPSPSQL 272 TSV G+QILD I + A G+ V V GYSQSA+I+SLEM+ L++ L P P P++L Sbjct 178 TSVDQGVQILDQTIKSTLAAHPGDSVAVLGYSQSAIISSLEMRDLMNPALNPTPPLPTEL 237 Query 273 NFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYP 331 F L+GN MNPNGG+L+R GLNV +LGL FYG+TP D PYPT YTL+YDGFA FPRYP Sbjct 238 GFTLLGNPMNPNGGLLSRFVGLNVPSLGLDFYGSTPPDTPYPTNIYTLQYDGFASFPRYP 297 Query 332 LNVLSDINAVFGILTVHTTYADLTPAQIASATQLPT-------QGTTSNTYYIIETEHLP 384 LN+LSD+NA GI T+H Y DL PA + ++ T G YY+I +LP Sbjct 298 LNLLSDLNAFLGIQTIHGQYPDLDPANLPPGYEMVTLPGSASLTGQGQTNYYMITHPNLP 357 Query 385 LLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVV 444 + APLRAIPVIG PLA L+EPN+ ++VNLGYGDP +GYSTSPANVPTPFGLFPDV V Sbjct 358 ITAPLRAIPVIGDPLADLIEPNMRILVNLGYGDPNYGYSTSPANVPTPFGLFPDVNYLEV 417 Query 445 ADALVAGTQQGVNDFMVELPAALNTLPQTP------MPAFPPYVPTLLPPPPPPQPATL- 497 A L GTQQG N F+ ++ A + P M + LL P + Sbjct 418 AGMLADGTQQGGNAFIADISAMAPSFADLPTSFASAMGSAGTAGSGLLAAAPTSANEVIR 477 Query 498 ------INIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQLAA-------G 544 IA++ A+ S Y++LLPTAD+ VT +PAYD+ LF++ + G Sbjct 478 ALQDANTAIANSIANASSNAYAVLLPTADIANMLVTSMPAYDINLFLDGIEQIVDGDPLG 537 Query 545 NLRAAIELPLAATIGLAALGGMIEFIAIVVTLADI 579 L A+ PLAA + L + I + T+ I Sbjct 538 GLTYALVAPLAANTAIVTLASGFQLIVLQNTVDAI 572 >gi|289764268|ref|ZP_06523646.1| PE family protein [Mycobacterium tuberculosis GM 1503] gi|289711774|gb|EFD75790.1| PE family protein [Mycobacterium tuberculosis GM 1503] gi|344217971|gb|AEM98601.1| PE family protein [Mycobacterium tuberculosis CTRI-2] Length=525 Score = 405 bits (1040), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 81 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 133 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 134 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 193 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 194 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 253 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 254 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTEVTDYYIIRTENRPLLQPLRAVP 313 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 314 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 373 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 374 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 427 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 428 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 487 Query 571 A 571 A Sbjct 488 A 488 >gi|148821344|ref|YP_001286098.1| PE family protein [Mycobacterium tuberculosis F11] gi|253797072|ref|YP_003030073.1| PE family protein [Mycobacterium tuberculosis KZN 1435] gi|289552403|ref|ZP_06441613.1| PE family protein [Mycobacterium tuberculosis KZN 605] gi|148719871|gb|ABR04496.1| PE family protein [Mycobacterium tuberculosis F11] gi|253318575|gb|ACT23178.1| PE family protein [Mycobacterium tuberculosis KZN 1435] gi|289437035|gb|EFD19528.1| PE family protein [Mycobacterium tuberculosis KZN 605] gi|328456861|gb|AEB02284.1| PE family protein [Mycobacterium tuberculosis KZN 4207] Length=533 Score = 404 bits (1039), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 89 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 141 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 142 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 201 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 202 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 261 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 262 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTEVTDYYIIRTENRPLLQPLRAVP 321 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 322 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 381 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 382 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 435 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 436 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 495 Query 571 A 571 A Sbjct 496 A 496 >gi|240168157|ref|ZP_04746816.1| PE family protein [Mycobacterium kansasii ATCC 12478] Length=560 Score = 404 bits (1039), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 273/563 (49%), Positives = 353/563 (63%), Gaps = 58/563 (10%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 + YV A P ++A AA DL IG A+ A+AA A PT+ LAAAAADEVS A+A LFGAYG+ Sbjct 1 MPYVLADPQMMATAAADLERIGVAVGSASAAAAGPTSSLAAAAADEVSAAIANLFGAYGR 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 ++QAI + AF EF + LAAA + +EATN + + TA P+ Sbjct 61 EYQAIVNLLKAFQAEFARTLAAAGLVYAQSEATNAATVSASITAS-----------PLTG 109 Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 ++IMGG+G+P P YVN + +I P +AL TPE+LYP+TG KSLP TS Sbjct 110 PTVSLIMGGSGNPTPGIDYVNDLLN-YISPQFGATNAQALFTPEQLYPLTGEKSLPLTTS 168 Query 219 VQLGLQILDGAIWEQINA-GNHVTVFGYSQSAVIASLEMQHLISLGPN-APSPSQLNFIL 276 V G+QIL AI ++N GN V V GYSQSA+IASLEM++L ++ P AP +L F+L Sbjct 169 VSQGVQILHNAILSEVNTLGNSVVVGGYSQSAIIASLEMRNLAAMPPGTAPPADRLGFVL 228 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 + N MNPNGG+L+R GL++ +LG+ F+GATP D YPT+ YT EYDGFADFPRYPLN++ Sbjct 229 LANPMNPNGGLLSRFAGLSLPSLGVEFFGATPADTIYPTSIYTHEYDGFADFPRYPLNIV 288 Query 336 SDINAVFGILTVHTTYADLTPAQI--ASATQLPTQGTTSN--TYYIIETEHLPLLAPLRA 391 SD+NA+ GI VHT ++ P + +LPT+ T + +YYII T HLPLL PLR Sbjct 289 SDLNAIAGIAFVHTDTPEINPQTLPPGDLIKLPTEPTYNGNTSYYIIRTHHLPLLTPLRF 348 Query 392 IPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAG 451 IPV+G PLA LVEPNL IVNLGYGDPR+GYST+PANVPTPFGLFP+V +VVA LV G Sbjct 349 IPVLGNPLADLVEPNLTTIVNLGYGDPRYGYSTAPANVPTPFGLFPEVDPAVVAGELVTG 408 Query 452 TQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTL-------------LPPPPPPQPATLI 498 TQQG N AA+N + P PP VP+L LPPP P T I Sbjct 409 TQQGFN-------AAVNDI-LGQGPQGPPTVPSLGSSRLVDLLTSIALPPPEILAPPTSI 460 Query 499 N------------IADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAA 543 + +++T + +S+ Y LLPTAD+ A +T +P+Y+L LF + Q Sbjct 461 DGLITDLQAANTYLSNTISGGLSSAYESLLPTADILNAGLTEVPSYNLNLFLDGIEQAVN 520 Query 544 GN---LRAAIELPLAATIGLAAL 563 G+ L AI P+AA +GL AL Sbjct 521 GDPVGLINAIGYPIAADVGLLAL 543 >gi|31791330|ref|NP_853823.1| PE family protein [Mycobacterium bovis AF2122/97] gi|57116695|ref|YP_177696.1| PE family protein [Mycobacterium tuberculosis H37Rv] gi|121636064|ref|YP_976287.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 28 more sequence titles Length=525 Score = 404 bits (1038), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 81 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 133 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 134 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 193 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 194 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 253 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 254 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTGVTDYYIIRTENRPLLQPLRAVP 313 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 314 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 373 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 374 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 427 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 428 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 487 Query 571 A 571 A Sbjct 488 A 488 >gi|15839534|ref|NP_334571.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|254366604|ref|ZP_04982648.1| PE family protein [Mycobacterium tuberculosis str. Haarlem] gi|289747919|ref|ZP_06507297.1| PE family protein [Mycobacterium tuberculosis 02_1987] 13 more sequence titles Length=533 Score = 404 bits (1038), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 89 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 141 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 142 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 201 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 202 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 261 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 262 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTGVTDYYIIRTENRPLLQPLRAVP 321 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 322 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 381 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 382 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 435 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 436 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 495 Query 571 A 571 A Sbjct 496 A 496 >gi|289441524|ref|ZP_06431268.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis T46] gi|289414443|gb|EFD11683.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis T46] Length=532 Score = 404 bits (1038), Expect = 3e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 88 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 140 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 141 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 200 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 201 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 260 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 261 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTGVTDYYIIRTENRPLLQPLRAVP 320 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 321 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 380 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 381 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 434 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 435 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 494 Query 571 A 571 A Sbjct 495 A 495 >gi|254549087|ref|ZP_05139534.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297632626|ref|ZP_06950406.1| PE family protein [Mycobacterium tuberculosis KZN 4207] gi|297729601|ref|ZP_06958719.1| PE family protein [Mycobacterium tuberculosis KZN R506] gi|313656928|ref|ZP_07813808.1| PE family protein [Mycobacterium tuberculosis KZN V2475] Length=490 Score = 403 bits (1036), Expect = 4e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 46 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 98 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 99 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 158 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 159 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 218 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 219 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTEVTDYYIIRTENRPLLQPLRAVP 278 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 279 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 338 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 339 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 392 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 393 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 452 Query 571 A 571 A Sbjct 453 A 453 >gi|167970270|ref|ZP_02552547.1| PE family protein [Mycobacterium tuberculosis H37Ra] gi|294994623|ref|ZP_06800314.1| PE family protein [Mycobacterium tuberculosis 210] gi|306774239|ref|ZP_07412576.1| PE-PPE domain protein [Mycobacterium tuberculosis SUMu001] 7 more sequence titles Length=490 Score = 402 bits (1034), Expect = 6e-110, Method: Compositional matrix adjust. Identities = 237/421 (57%), Positives = 281/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 46 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 98 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 99 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 158 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 159 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 218 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 219 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTGVTDYYIIRTENRPLLQPLRAVP 278 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 279 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 338 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 339 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 392 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ LA VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 393 NYAVLLPTVDIALALVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 452 Query 571 A 571 A Sbjct 453 A 453 >gi|339293217|gb|AEJ45328.1| PE family protein [Mycobacterium tuberculosis CCDC5079] Length=490 Score = 401 bits (1030), Expect = 2e-109, Method: Compositional matrix adjust. Identities = 236/421 (57%), Positives = 280/421 (67%), Gaps = 23/421 (5%) Query 161 TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL---VTPEELYPITGVKSLPFQT 217 T + G TG P+P PS + P+ V +AL TPEELYP+TGV+SL T Sbjct 46 TTLFFGPTGIPLPPPS-------MLTPPIRCRSVRRALQAVFTPEELYPLTGVRSLVLNT 98 Query 218 SVQLGLQILDGAIW-EQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFIL 276 SV+ GL IL AI E GN VTVFG+SQSA+IASLEMQ ++G APS S LNF+L Sbjct 99 SVEEGLTILHDAIMVELATTGNAVTVFGWSQSAIIASLEMQRFTAMGGAAPSASDLNFVL 158 Query 277 IGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDGFADFPRYPLNVL 335 +GNEMNPNGG+LAR P L + TL L FYGATP D YPT YTLEYDGFADF RYPLN + Sbjct 159 VGNEMNPNGGMLARFPDLTLPTLDLTFYGATPSDTIYPTAIYTLEYDGFADFSRYPLNFI 218 Query 336 SDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-YYIIETEHLPLLAPLRAIP 393 SD+NAV GI VHT Y DLTPAQ+ AT+LPT G T T YYII TE+ PLL PLRA+P Sbjct 219 SDLNAVAGITFVHTKYLDLTPAQVEGATKLPTSPGYTGVTDYYIIRTENRPLLQPLRAVP 278 Query 394 VIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQ 453 VIG PLA L++PNL+VIVNLGYGDP +GYSTS A+V TPFGL+P+VP V+ADAL AGTQ Sbjct 279 VIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFGLWPNVPPQVIADALAAGTQ 338 Query 454 QGVNDFMVELPAALN---TLPQTPMPAFPPYVPTLLPPPPPPQPATLINIADTFASVVST 510 +G+ DF +L A TLPQ +P V + T + +T A ++ST Sbjct 339 EGILDFTADLQALSAQPLTLPQIQLPQPADLVAAVA------AAPTPAEVVNTLARIIST 392 Query 511 GYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLAALGGMIEFI 570 Y++LLPT D+ L VT LP Y LFV QLAAGNL AI PLAAT+GL + I Sbjct 393 NYAVLLPTVDIALGLVTTLPLYTTQLFVRQLAAGNLINAIGYPLAATVGLGTIDSGRRGI 452 Query 571 A 571 A Sbjct 453 A 453 >gi|183980402|ref|YP_001848693.1| PE family protein [Mycobacterium marinum M] gi|183173728|gb|ACC38838.1| PE family protein [Mycobacterium marinum M] Length=582 Score = 398 bits (1023), Expect = 1e-108, Method: Compositional matrix adjust. Identities = 252/541 (47%), Positives = 334/541 (62%), Gaps = 46/541 (8%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 ++YVF +P + A DL GIGS I+ A+AA A PT+ L +AAADEVSTA+A LFG YGQ Sbjct 1 MTYVFVEPETITTMAADLEGIGSTIDAASAAAAGPTSRLVSAAADEVSTAIAGLFGGYGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVL----- 153 Q+QA+ A AAFH +FTQ +AAA A+ EA++ +A+ A F + +L Sbjct 61 QYQAVVAHAAAFHQQFTQTVAAAGLAYAQTEASSVAAISNALEA--FGTQAHSLLGGGNA 118 Query 154 ------------PPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTP 201 P+ +++MGG+G+P+P P Y+ +I P +AL TP Sbjct 119 AASATPSASITTTPLTGPTVSLVMGGSGNPLPGPDYLADFFN-YITPQFGVTTSQALFTP 177 Query 202 EELYPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLIS 261 E+LYP+TG KSLP SV G+QIL AI QI GN V V GYSQSA+IASLEMQ+L + Sbjct 178 EQLYPLTGEKSLPLAISVSQGVQILHNAILGQIAEGNSVVVGGYSQSAIIASLEMQNLAA 237 Query 262 LGPN-APSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYPTTTYTL 319 + P AP+ QL F+L+ N MNPNGG+L+R GL + +LG+ FYG+TP D YPT+ YT Sbjct 238 MPPGTAPTADQLGFLLLANPMNPNGGLLSRFAGLTLPSLGVDFYGSTPADTIYPTSIYTH 297 Query 320 EYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQI--ASATQLPTQG--TTSNTY 375 EYDGFADFPRYPLN++SD+NA+ GI VHT + P + +L T T + +Y Sbjct 298 EYDGFADFPRYPLNIVSDLNAIAGIAFVHTDTPTINPETLPPGDLIKLDTSADYTGNTSY 357 Query 376 YIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGL 435 Y+I TE LPLL PLR IPV+G PLA L++P+L IVNLGYGDPR+GYST+PAN+ TPFGL Sbjct 358 YLIHTERLPLLEPLRFIPVVGNPLADLLQPDLTTIVNLGYGDPRYGYSTAPANIETPFGL 417 Query 436 FPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPA 495 FP+V VVA LV GTQQG + +L A P P P +P L P PA Sbjct 418 FPEVDPKVVAQQLVIGTQQGFHSAAHDLVAP---QPSPPTPRLFLDIPNPLASIALPPPA 474 Query 496 TLI-----------------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFV 538 +L+ + + F V++T Y+ LLPTAD+ A +T +P+Y+L LF+ Sbjct 475 SLVAPTSIDGFINALQTANTTVTNAFTDVLATSYAKLLPTADIINAGLTTVPSYNLNLFL 534 Query 539 N 539 + Sbjct 535 D 535 >gi|183981048|ref|YP_001849339.1| PPE family protein [Mycobacterium marinum M] gi|183174374|gb|ACC39484.1| PPE family protein [Mycobacterium marinum M] Length=661 Score = 376 bits (966), Expect = 5e-102, Method: Compositional matrix adjust. Identities = 219/435 (51%), Positives = 284/435 (66%), Gaps = 23/435 (5%) Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 Q A +MGG+G P+P+ YV +L+I V V +AL TPE LYP+TGVK+L F TS Sbjct 215 QTIAEVMGGSGIPMPSRRYVQLANSLYIGRSVGGAVAQALFTPEGLYPVTGVKNLTFDTS 274 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIG 278 V G+ IL+ AI EQI AGN+VTVFGYSQSA I+SL M L + N P+P QL+F L+G Sbjct 275 VARGVVILESAIREQITAGNNVTVFGYSQSATISSLTMTKLAA-SINPPTPDQLSFTLVG 333 Query 279 NEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDI 338 + NPNGG+ R PGL++ +LG+ GATPDN YPT YTLEYDG ADFPRYPLN++S + Sbjct 334 DPNNPNGGVATRFPGLSLPSLGITASGATPDNLYPTRIYTLEYDGVADFPRYPLNLVSTL 393 Query 339 NAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHLPLLAPLRAIPVIGP 397 NA+ G VHT Y LTPAQI +A L T G T YY+I TE LPLL PLRA+PV+G Sbjct 394 NALAGAYYVHTDYLFLTPAQIDAAVHLTNTVGPTMTDYYVIRTEDLPLLEPLRALPVLGD 453 Query 398 PLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVN 457 PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGL+P+V +ADAL AGTQQG++ Sbjct 454 PLADLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLWPEVSPLTIADALAAGTQQGIH 513 Query 458 DF-----MVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLIN--------IADTF 504 DF ++LP N +P+ P PT P P T+I+ +A+T Sbjct 514 DFGYHISHLDLPQITNG-SSSPV-GNPQAAPTTGPAAPMVSINTIIDDLQAANSQVANTI 571 Query 505 ASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN---LRAAIELPLAATI 558 V + Y+ LLPTAD+ A +T +P+Y++ LF + Q+A G+ A+ PLAA + Sbjct 572 TEVGAASYAALLPTADIANAAITSVPSYNINLFLDGIQQVANGDPMGFVNAVGYPLAADV 631 Query 559 GLAALGGMIEFIAIV 573 L + G+++ +V Sbjct 632 ALITVAGLLQAFVLV 646 >gi|240173252|ref|ZP_04751910.1| PPE family protein [Mycobacterium kansasii ATCC 12478] Length=584 Score = 375 bits (964), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 249/569 (44%), Positives = 335/569 (59%), Gaps = 46/569 (8%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 ++Y+ QP L AAA +A I SAI A AA A TTG+ AAA DEVS +A+LF AYGQ Sbjct 1 MTYMITQPDTLTAAAASVAEIRSAIGSANAATVASTTGVIAAARDEVSELIASLFRAYGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSP-------- 150 + QA+ Q AFH+ F Q LA AA ++ AEA N + V EA A + P Sbjct 61 ECQAVMTQAGAFHDAFAQSLATAATSYAQAEAANAAT-VTEALAAISSPVRAMLGGAAPL 119 Query 151 -PVLPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPV--VSNPVVKALVTPEELYPI 207 +P NT ++MGG+G+PIP+ +VN I + +I P V V++L TPE Y Sbjct 120 TSAVPSAAAVNT-LVMGGSGNPIPSIDFVNNIVSRYIAPFFPVDPNFVQSLFTPEGFYID 178 Query 208 TGVKSLPFQTSVQLGLQILDGAIWEQ-------INAGNHVTVFGYSQSAVIASLEMQHLI 260 TG+K+LP SV G+ IL + + +GN V V G SQSA+IASL M+ L Sbjct 179 TGIKTLPLNVSVAQGVTILTNTLVGTNPPYAGLLTSGNTVNVSGESQSAMIASLVMRSLN 238 Query 261 ---SLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTY 317 S +P + LNF L+GN MNPNGG+ R GL++ +LG+ YGATPDN +PT + Sbjct 239 PTNSGAAGSPYFNNLNFSLVGNPMNPNGGLFERFVGLSLPSLGIEMYGATPDNAFPTKIF 298 Query 318 TLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYY 376 T+EYDG ADFPRYP+NVL+D+NA GI ++H YA LTP Q+A+A L T G TS +YY Sbjct 299 TIEYDGAADFPRYPINVLADLNAFMGIQSLHGQYATLTPEQLATAIPLTNTVGPTSTSYY 358 Query 377 IIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLF 436 +I T++LPLL P+RAIP +G P+A LV+PNL +VN GYGDP +G+STSP NVPTPFG+ Sbjct 359 MIPTQNLPLLDPVRAIPFVGKPIADLVQPNLRYLVNWGYGDPAYGWSTSPPNVPTPFGVL 418 Query 437 PDVPASV-VADALVAGTQQGVNDFMVELPAALNTLPQTP----MPAFPPYVPTLLP--PP 489 P + A+ + L GTQQG++ FM ++ A + T P P P P+LL P Sbjct 419 PPLSATTSLPGYLAIGTQQGISAFMNDISAGIATFPDLPALLATPLGAAGSPSLLSGLSP 478 Query 490 PPPQPATLINIADTFASVVS--------TGYSILLPTADLGLAFVTILPAYDLTLFVNQL 541 P I+ + + V+ Y+ LLPTAD+ A +T +P+Y++ LF++ L Sbjct 479 AAFSPTDFIHFLQSTNTTVTNFITRTAANTYAALLPTADIANAILTTVPSYNVNLFLSGL 538 Query 542 A-------AGNLRAAIELPLAATIGLAAL 563 AG L A P+AA I L L Sbjct 539 EQALNGDPAGGLVYAFGAPIAADIALGTL 567 >gi|183983956|ref|YP_001852247.1| PPE family protein [Mycobacterium marinum M] gi|183177282|gb|ACC42392.1| PPE family protein [Mycobacterium marinum M] Length=594 Score = 373 bits (957), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 251/587 (43%), Positives = 334/587 (57%), Gaps = 52/587 (8%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 ++YV QP +L AA D+A I SAI A AA A+PTT + AAA DEVS +A LF AYGQ Sbjct 1 MTYVITQPDILTTAAADIADIRSAIGVANAAAASPTTAMMAAAGDEVSQLIAKLFSAYGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEAT----------AGLFKPT 148 + QA+ A FH+ F LAAA + + AEA T+ L Q T G T Sbjct 61 ECQAVITDAAVFHDHFAATLAAAGSVYTQAEAAGTATLSQALTTLSSPIRALLGGTAAST 120 Query 149 SPPVLPPMFNQNTA-----IIMGGTGSPIPTPSYVNAITTLFIDPV--VSNPVVKALVTP 201 S + +++GG+G+PIP+P+Y++ + + F+ P V +V+ L TP Sbjct 121 SGAMAAAAPMAAAGDPIYTLVVGGSGNPIPSPAYISNVVSKFVAPYFPVDPALVQGLFTP 180 Query 202 EELYPITGVKSLPFQTSVQLGLQILDGAIWEQ-------INAGNHVTVFGYSQSAVIASL 254 + Y TG+K+LP SV G+ IL + + +GN V V G SQSA+IASL Sbjct 181 AQFYIDTGIKTLPLNVSVPQGVAILTNTLVGTNPPYLGLLTSGNTVNVTGDSQSAMIASL 240 Query 255 EMQHLI---SLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNP 311 M+ L S +P L F L GN MNPNGG+ AR PGL++ ++GL FYG+TPDN Sbjct 241 VMRALNPTNSGAAGSPYFDDLTFSLFGNPMNPNGGLFARFPGLSLPSMGLDFYGSTPDNS 300 Query 312 YPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGT 370 +PT +TLEYDG ADFPRYP+N L+D+NA GI ++H Y LTP Q+ +A L T G Sbjct 301 FPTNVFTLEYDGAADFPRYPINFLADLNAFLGIQSLHGQYPSLTPEQLDTAIPLTNTVGP 360 Query 371 TSNTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVP 430 TS YY+I + HLPLL P+RAIPVIG P+A L+EP+L +VN GYGDP +G+STSP NVP Sbjct 361 TSTNYYMIPSPHLPLLDPVRAIPVIGTPIADLIEPDLRYLVNWGYGDPAYGWSTSPPNVP 420 Query 431 TPFGLFPDVPASVVADALVA-GTQQGVNDFMVELPA---ALNTLPQTPMPA---FPPYVP 483 TPFG+ P + A+ +A GTQQGVN F+ ++ A A + LP T + A Sbjct 421 TPFGVLPPLQATTSLPGYLAIGTQQGVNAFVSDINAEISAYSNLPSTLLSAPLGASGAGG 480 Query 484 TLLPPPPPP--QPATLIN--------IADTFASVVSTGYSILLPTADLGLAFVTILPAYD 533 TLL P P I+ I + ++ + Y+ LLPTAD+ A VT +P+YD Sbjct 481 TLLAGLSPATFSPNDFIHFLQSANTTIVNDISNTAANTYAFLLPTADIANALVTSVPSYD 540 Query 534 LTLF-------VNQLAAGNLRAAIELPLAATIGLAALGGMIEFIAIV 573 L LF +N AG L A P+AA I L L G E A + Sbjct 541 LNLFLSGIEQAINGDPAGGLVYAFGAPIAANIALGTLAGGFELRAFL 587 >gi|289574477|ref|ZP_06454704.1| PPE family protein [Mycobacterium tuberculosis K85] gi|339631854|ref|YP_004723496.1| PPE family protein [Mycobacterium africanum GM041182] gi|289538908|gb|EFD43486.1| PPE family protein [Mycobacterium tuberculosis K85] gi|339331210|emb|CCC26892.1| PPE family protein [Mycobacterium africanum GM041182] Length=655 Score = 370 bits (951), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 242/568 (43%), Positives = 326/568 (58%), Gaps = 47/568 (8%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 79 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 138 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q AA A +V A A T ++ +Q A L PM Sbjct 139 ESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 198 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +ALVTP+ L Sbjct 199 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALVTPQGL 258 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 259 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 317 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 318 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 377 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYII TE+L Sbjct 378 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENL 437 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 438 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 497 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADALVAGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 498 IADALVAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 552 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN--- 545 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ Sbjct 553 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMG 612 Query 546 LRAAIELPLAATIGLAALGGMIEFIAIV 573 L A+ PLAA + L G ++ + I+ Sbjct 613 LVNAVGYPLAADVALFTAAGGLQLLIII 640 >gi|15841269|ref|NP_336306.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|254231984|ref|ZP_04925311.1| PPE family protein [Mycobacterium tuberculosis C] gi|254364631|ref|ZP_04980677.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem] gi|13881497|gb|AAK46120.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|124601043|gb|EAY60053.1| PPE family protein [Mycobacterium tuberculosis C] gi|134150145|gb|EBA42190.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem] gi|323719678|gb|EGB28799.1| PPE family protein [Mycobacterium tuberculosis CDC1551A] Length=655 Score = 370 bits (950), Expect = 4e-100, Method: Compositional matrix adjust. Identities = 241/568 (43%), Positives = 326/568 (58%), Gaps = 47/568 (8%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 79 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 138 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q +AA A +V A A T ++ +Q A L PM Sbjct 139 ESLYECMWAQDVAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 198 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +AL TP+ L Sbjct 199 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALFTPQGL 258 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 259 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 317 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 318 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 377 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYII TE+L Sbjct 378 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENL 437 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 438 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 497 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADALVAGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 498 IADALVAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 552 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN--- 545 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ Sbjct 553 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMG 612 Query 546 LRAAIELPLAATIGLAALGGMIEFIAIV 573 L A+ PLAA + L G ++ + I+ Sbjct 613 LVNAVGYPLAADVALFTAAGGLQLLIII 640 >gi|57116915|ref|YP_177839.1| PPE family protein [Mycobacterium tuberculosis H37Rv] gi|148661606|ref|YP_001283129.1| PPE family protein [Mycobacterium tuberculosis H37Ra] gi|148823014|ref|YP_001287768.1| PPE family protein [Mycobacterium tuberculosis F11] 43 more sequence titles Length=655 Score = 369 bits (947), Expect = 9e-100, Method: Compositional matrix adjust. Identities = 241/568 (43%), Positives = 325/568 (58%), Gaps = 47/568 (8%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 79 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 138 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q AA A +V A A T ++ +Q A L PM Sbjct 139 ESLYECMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 198 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +AL TP+ L Sbjct 199 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALFTPQGL 258 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 259 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 317 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 318 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 377 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYII TE+L Sbjct 378 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENL 437 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 438 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 497 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADALVAGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 498 IADALVAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 552 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN--- 545 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ Sbjct 553 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMG 612 Query 546 LRAAIELPLAATIGLAALGGMIEFIAIV 573 L A+ PLAA + L G ++ + I+ Sbjct 613 LVNAVGYPLAADVALFTAAGGLQLLIII 640 >gi|31792988|ref|NP_855481.1| PPE family protein [Mycobacterium bovis AF2122/97] gi|31618579|emb|CAD94531.1| PPE FAMILY PROTEIN [Mycobacterium bovis AF2122/97] Length=655 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 241/568 (43%), Positives = 325/568 (58%), Gaps = 47/568 (8%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 79 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 138 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q AA A +V A A T ++ +Q A L PM Sbjct 139 ESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 198 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +ALVTP+ L Sbjct 199 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALVTPQGL 258 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 259 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 317 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 318 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 377 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYII TE+L Sbjct 378 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENL 437 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 438 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 497 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADAL AGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 498 IADALAAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 552 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN--- 545 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ Sbjct 553 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMG 612 Query 546 LRAAIELPLAATIGLAALGGMIEFIAIV 573 L A+ PLAA + L G ++ + I+ Sbjct 613 LVNAVGYPLAADVALFTAAGGLQLLIII 640 >gi|289443272|ref|ZP_06433016.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289447415|ref|ZP_06437159.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] gi|289750370|ref|ZP_06509748.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289753895|ref|ZP_06513273.1| PPE family protein [Mycobacterium tuberculosis EAS054] gi|289416191|gb|EFD13431.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289420373|gb|EFD17574.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] gi|289690957|gb|EFD58386.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289694482|gb|EFD61911.1| PPE family protein [Mycobacterium tuberculosis EAS054] Length=655 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 241/568 (43%), Positives = 325/568 (58%), Gaps = 47/568 (8%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 79 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 138 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q AA A +V A A T ++ +Q A L PM Sbjct 139 ESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 198 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +AL TP+ L Sbjct 199 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALFTPQGL 258 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 259 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 317 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 318 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 377 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYII TE+L Sbjct 378 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENL 437 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 438 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 497 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADALVAGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 498 IADALVAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 552 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN--- 545 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ Sbjct 553 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMG 612 Query 546 LRAAIELPLAATIGLAALGGMIEFIAIV 573 L A+ PLAA + L G ++ + I+ Sbjct 613 LVNAVGYPLAADVALFTAAGGLQLLIII 640 >gi|121637701|ref|YP_977924.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990185|ref|YP_002644872.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121493348|emb|CAL71819.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773298|dbj|BAH26104.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341601728|emb|CCC64401.1| PPE family protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=655 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 240/568 (43%), Positives = 325/568 (58%), Gaps = 47/568 (8%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 79 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 138 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q AA A +V A A T ++ +Q A L PM Sbjct 139 ESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 198 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +ALVTP+ L Sbjct 199 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALVTPQGL 258 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 259 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 317 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 318 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 377 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYI+ TE+L Sbjct 378 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIVRTENL 437 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 438 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 497 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADAL AGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 498 IADALAAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 552 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN--- 545 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ Sbjct 553 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMG 612 Query 546 LRAAIELPLAATIGLAALGGMIEFIAIV 573 L A+ PLAA + L G ++ + I+ Sbjct 613 LVNAVGYPLAADVALFTAAGGLQLLIII 640 >gi|307084416|ref|ZP_07493529.1| PE-PPE domain protein [Mycobacterium tuberculosis SUMu012] gi|308365984|gb|EFP54835.1| PE-PPE domain protein [Mycobacterium tuberculosis SUMu012] Length=542 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 210/434 (49%), Positives = 283/434 (66%), Gaps = 25/434 (5%) Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 Q ++MGG+G+PIP+ YV L++ V + +AL TP+ LYP+ +K+L F +S Sbjct 100 QTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALFTPQGLYPVVVIKNLTFDSS 159 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIG 278 V G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + + PSP +L+F LIG Sbjct 160 VAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SADPPSPDELSFTLIG 218 Query 279 NEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDI 338 N NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG ADFPRYPLN +S + Sbjct 219 NPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTL 278 Query 339 NAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHLPLLAPLRAIPVIGP 397 NA+ G VH+ Y LTP QI +A L T G T YYII TE+LPLL PLR++P++G Sbjct 279 NAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVPIVGN 338 Query 398 PLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVN 457 PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V+ADALVAGTQQG+ Sbjct 339 PLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVVIADALVAGTQQGIG 398 Query 458 DFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI--------NIADTFA 505 DF ++ + + P+PA +P+ P P PP +LI N+A+T + Sbjct 399 DFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLIDDLQVANRNLANTIS 453 Query 506 SVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN---LRAAIELPLAATIG 559 V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ L A+ PLAA + Sbjct 454 KVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMGLVNAVGYPLAADVA 513 Query 560 LAALGGMIEFIAIV 573 L G ++ + I+ Sbjct 514 LFTAAGGLQLLIII 527 >gi|308231943|ref|ZP_07663959.1| PPE family protein [Mycobacterium tuberculosis SUMu001] gi|308215534|gb|EFO74933.1| PPE family protein [Mycobacterium tuberculosis SUMu001] Length=611 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 230/526 (44%), Positives = 306/526 (59%), Gaps = 41/526 (7%) Query 47 SVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQQFQAISAQ 106 S AA A AG+ A A T A AA+ A +GQ AI+A Sbjct 54 STSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAAL 113 Query 107 VAAFHNEFTQRLAAAANAFVNAEA--TNTSALVQE-----ATAGLFKPTSPPVLPPM--- 156 + + + Q AA A +V A A T ++ +Q A L PM Sbjct 114 ESLYECMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIPGAASLDARLPSSAEAPMGVV 173 Query 157 ------------FNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEEL 204 Q ++MGG+G+PIP+ YV L++ V + +AL TP+ L Sbjct 174 RAVNSAIAANAAAAQTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALFTPQGL 233 Query 205 YPITGVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGP 264 YP+ +K+L F +SV G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + Sbjct 234 YPVVVIKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SA 292 Query 265 NAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGF 324 + PSP +L+F LIGN NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG Sbjct 293 DPPSPDELSFTLIGNPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGV 352 Query 325 ADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHL 383 ADFPRYPLN +S +NA+ G VH+ Y LTP QI +A L T G T YYII TE+L Sbjct 353 ADFPRYPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENL 412 Query 384 PLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASV 443 PLL PLR++P++G PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPFGLFP+V V Sbjct 413 PLLEPLRSVPIVGNPLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFGLFPEVSPVV 472 Query 444 VADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI- 498 +ADALVAGTQQG+ DF ++ + + P+PA +P+ P P PP +LI Sbjct 473 IADALVAGTQQGIGDFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLID 527 Query 499 -------NIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLF 537 N+A+T + V +T Y+ +LPTAD+ A +TI+P+Y++ LF Sbjct 528 DLQVANRNLANTISKVAATSYATVLPTADIANAALTIVPSYNIHLF 573 >gi|289569870|ref|ZP_06450097.1| PPE family protein [Mycobacterium tuberculosis T17] gi|289543624|gb|EFD47272.1| PPE family protein [Mycobacterium tuberculosis T17] Length=558 Score = 362 bits (930), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 209/434 (49%), Positives = 282/434 (65%), Gaps = 25/434 (5%) Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 Q ++MGG+G+PIP+ YV L++ V + +AL TP+ LYP+ +K+L F +S Sbjct 116 QTVGLVMGGSGTPIPSARYVELANALYMSGSVPGVIAQALFTPQGLYPVVVIKNLTFDSS 175 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIG 278 V G IL+ AI +QI AGN+VTVFGYSQSA I+SL M +L + + PSP +L+F LIG Sbjct 176 VAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAA-SADPPSPDELSFTLIG 234 Query 279 NEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDI 338 N NPNGG+ R PG++ +LG+ GATP N YPT YT+EYDG ADFPRYPLN +S + Sbjct 235 NPNNPNGGVATRFPGISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTL 294 Query 339 NAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNTYYIIETEHLPLLAPLRAIPVIGP 397 NA+ G VH+ Y LTP QI +A L T G T YYII TE+LPLL PLR++P++G Sbjct 295 NAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVPIVGN 354 Query 398 PLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVN 457 PLA LV+PNL+VIVNLGYGDP +GYSTSP NV TPF LFP+V V+ADALVAGTQQG+ Sbjct 355 PLANLVQPNLKVIVNLGYGDPAYGYSTSPPNVATPFRLFPEVSPVVIADALVAGTQQGIG 414 Query 458 DFMVELPAALNTLPQTPMPAFPPYVPTLLP----PPPPPQPATLI--------NIADTFA 505 DF ++ + + P+PA +P+ P P PP +LI N+A+T + Sbjct 415 DFAYDV-----SHLELPLPADGSTMPSTAPGSGTPVPPLSIDSLIDDLQVANRNLANTIS 469 Query 506 SVVSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN---LRAAIELPLAATIG 559 V +T Y+ +LPTAD+ A +TI+P+Y++ LF + Q G+ L A+ PLAA + Sbjct 470 KVAATSYATVLPTADIANAALTIVPSYNIHLFLEGIQQALKGDPMGLVNAVGYPLAADVA 529 Query 560 LAALGGMIEFIAIV 573 L G ++ + I+ Sbjct 530 LFTAAGGLQLLIII 543 >gi|183980400|ref|YP_001848691.1| PE family protein [Mycobacterium marinum M] gi|183173726|gb|ACC38836.1| PE family protein [Mycobacterium marinum M] Length=589 Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 261/592 (45%), Positives = 345/592 (59%), Gaps = 54/592 (9%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 ++Y+ QP +L +AA D+ GI A+ QA AA A PTT L AAAADEVSTA A LFG Y Sbjct 1 MTYMMTQPQLLTSAAADVEGIRWALTQANAAAAGPTTSLVAAAADEVSTAAAKLFGGYAL 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSAL----------VQEATAGLFKPT 148 ++Q++ V AFH EF + LAAA A+ AEA NT+ + +Q G T Sbjct 61 EYQSVIGHVTAFHEEFVRTLAAAGTAYAGAEAVNTATISGALNALRTPIQSLLGGGAAST 120 Query 149 SPPVLPPMFNQN-----TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEE 203 + A+IMGG+G+PIP P Y+ + P + ++ L TPE Sbjct 121 VAAGGAAVAPAALADPFVALIMGGSGTPIPPPDYLQDVAPYI--PGMPTQLLP-LNTPEG 177 Query 204 LYPITGVKSLPFQTSVQLGLQILDGAIWE---QINAGNHVTVFGYSQSAVIASLEMQHLI 260 LYP+T +K LP TSV G+QILD A++ I GN+V V GYSQSAV++SLEM++L Sbjct 178 LYPLTAIKDLPLNTSVANGVQILDNALFGPQGLITLGNNVNVLGYSQSAVVSSLEMRNLQ 237 Query 261 SLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNP-YPTTTYTL 319 +LG +P+ L F L+GN M PNGG+L+R PGL++ LGL FYG TP N Y YTL Sbjct 238 ALG--SPNTDNLAFTLLGNPMAPNGGLLSRFPGLSLPALGLDFYGGTPSNTGYELNQYTL 295 Query 320 EYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASA---TQLPTQGTTS--NT 374 YDG+ADFP+YPLN+L+D+NA GI VH Y DL P + + QLP + Sbjct 296 LYDGYADFPQYPLNLLADLNAFAGIQFVHGDYPDLDPNNLPAGYNLVQLPVSPGNNGLEN 355 Query 375 YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG 434 YY+I LP+L PLRAIPVIG PLA LVEPNL +VNLGYGDP +GYST A+V TPFG Sbjct 356 YYMITYPGLPILEPLRAIPVIGNPLADLVEPNLTYLVNLGYGDPNYGYSTGYADVTTPFG 415 Query 435 LFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFP----PYVPTLLPPPP 490 L P + A A+V GTQQGV F+ ++ A TLP +P F VP+ LP P Sbjct 416 LLPPIDPVDFAGAMVNGTQQGVTAFVNDISAIPATLPSLSLPDFSQTGGSSVPSTLPAVP 475 Query 491 PPQPATL-----------INIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVN 539 A++ NIA+ +V + Y+ LLPTAD+ +T +P+Y++ LF++ Sbjct 476 TVTNASINGFIDALQAANTNIANAITNVSADTYAALLPTADIINTVLTTVPSYNVNLFLD 535 Query 540 ---QLAAGN---LRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQLQS 585 Q G+ L AI P+AA + +AAL G E V+ LAD Q++ S Sbjct 536 GIQQFVNGDPVGLINAIGYPIAADVAVAALAGGFE----VIVLADTAQEVVS 583 >gi|183981512|ref|YP_001849803.1| PPE family protein, PPE28 [Mycobacterium marinum M] gi|183174838|gb|ACC39948.1| PPE family protein, PPE28 [Mycobacterium marinum M] Length=660 Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 215/434 (50%), Positives = 272/434 (63%), Gaps = 36/434 (8%) Query 160 NTAIIMGGTGSPIPTPSYVNAITTLFIDP-----VVSNPVVKALVTPEELYPITGVKSLP 214 + +++GG+G PIP+ SYV+ + F+ P VSN + +L TP E Y ITG+K++ Sbjct 212 DVTLVIGGSGFPIPSQSYVDNVVNNFVTPNFPSFTVSNAI--SLFTPAESYWITGIKTMT 269 Query 215 FQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNF 274 S GL ILD AI Q+ AGN+V V GYSQ A IASLEM +L + G P+ S ++F Sbjct 270 EDASWAEGLTILDTAIKAQLAAGNNVVVQGYSQGAGIASLEMSNLKAAG--VPTGS-VSF 326 Query 275 ILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNV 334 LIGN MNPNGG+ R GL +LG F+GATPDN Y T YTLEYDGFADFPRYPLN Sbjct 327 SLIGNAMNPNGGLYERFAGLVSPSLGKTFWGATPDNYYTTDVYTLEYDGFADFPRYPLNF 386 Query 335 LSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPV 394 +SD+NA+ GI VHT Y LT AQ+A+A LPT+G T TY++I TE+LPLL PLR +P Sbjct 387 VSDLNAIMGIYYVHTQYPTLTAAQVATAFTLPTEGATMTTYHMIPTENLPLLEPLRGVPF 446 Query 395 IGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQ 454 IG LA LV+P+L+V+VNLGYGDP +GYST PANVPTPFGLFPDV + V DALVAGTQQ Sbjct 447 IGNTLADLVQPDLKVLVNLGYGDPNYGYSTGPANVPTPFGLFPDVAPATVFDALVAGTQQ 506 Query 455 GVNDFM-------------VELPAALNTLPQTPMPAFPP------YVPTLLPPPPPPQPA 495 G++D + L N L P A V T+ Q A Sbjct 507 GISDAAADIGAWQLPSLPDISLSGISNALGSDPWSALSNATLPTLSVSTIENAIKGVQTA 566 Query 496 TLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVN---QLAAGN---LRAA 549 T +IA+T + +T Y+ LLPTAD+ A VT LPAY+L LF++ Q+ G+ L A Sbjct 567 T-TDIANTISFDATTAYATLLPTADVVNAMVTTLPAYNLKLFLDGILQVLDGDPAGLIYA 625 Query 550 IELPLAATIGLAAL 563 + P+AA L L Sbjct 626 LGAPIAADTALVTL 639 >gi|118617931|ref|YP_906263.1| PPE family protein [Mycobacterium ulcerans Agy99] gi|118570041|gb|ABL04792.1| PPE family protein [Mycobacterium ulcerans Agy99] Length=637 Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 214/434 (50%), Positives = 275/434 (64%), Gaps = 36/434 (8%) Query 160 NTAIIMGGTGSPIPTPSYVNAITTLFIDP-----VVSNPVVKALVTPEELYPITGVKSLP 214 + +++GG+G PIP+ SYV+ + F+ P VSN + +L TP E Y ITG+K++ Sbjct 189 DVTLVIGGSGFPIPSQSYVDNVVNNFVTPNFPSFTVSNAI--SLFTPAESYWITGIKTMT 246 Query 215 FQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNF 274 S GL ILD AI Q+ AGN+V V GYSQ A IASLEM +L + G P+ S ++F Sbjct 247 EDASWAEGLTILDTAIKAQLAAGNNVVVQGYSQGAGIASLEMSNLKAAG--VPTGS-VSF 303 Query 275 ILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNV 334 LIGN MNPNGG+ R GL +LG F+GATPDN Y T YTLEYDGFADFPRYP N Sbjct 304 SLIGNAMNPNGGLYERFAGLVSPSLGKTFWGATPDNYYTTDVYTLEYDGFADFPRYPPNF 363 Query 335 LSDINAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPV 394 +SD+NA+ GI VHT Y LT AQ+A+A LPT+G T TY++I TE+LPLL PLR +P Sbjct 364 VSDLNAIMGIYYVHTQYPTLTAAQVATAFTLPTEGATMTTYHMIPTENLPLLEPLRGVPF 423 Query 395 IGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQ 454 IG LA LV+P+L+V+VNLGYGDP +GYST PANVPTPFGLFPDV + V DALVAGTQQ Sbjct 424 IGNTLADLVQPDLKVLVNLGYGDPNYGYSTGPANVPTPFGLFPDVAPATVFDALVAGTQQ 483 Query 455 GVNDFMVELPA-ALNTLPQTPMPAFP------PY------------VPTLLPPPPPPQPA 495 G++D ++ A L +LP + P+ V T+ Q A Sbjct 484 GISDAAADIGAWQLPSLPDISLSGISNALGSDPWSALSNATLPTLSVSTIENAIKGVQTA 543 Query 496 TLINIADTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVN---QLAAGN---LRAA 549 T +IA+T + +T Y+ LLPTAD+ A VT LPAY+L LF++ Q+ G+ L A Sbjct 544 T-TDIANTISFDATTAYATLLPTADVVNAMVTTLPAYNLKLFLDGILQVLDGDPAGLIYA 602 Query 550 IELPLAATIGLAAL 563 + P+AA L L Sbjct 603 LGAPIAADTALVTL 616 >gi|240168156|ref|ZP_04746815.1| PE family protein [Mycobacterium kansasii ATCC 12478] Length=618 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 257/599 (43%), Positives = 345/599 (58%), Gaps = 57/599 (9%) Query 34 KEGWGLSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLF 93 KE ++ + AQP ++A AA ++ GI SAI A AA A PTTGLAAAAADEVS A ATLF Sbjct 24 KEIDRMTSMIAQPQLMADAAANIEGIRSAIAAANAAAAGPTTGLAAAAADEVSAAAATLF 83 Query 94 GAYGQQFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVL 153 GAY Q++QA+ Q A FH+ F Q LA AA A+ AEA N +A+V A + P + + Sbjct 84 GAYAQEYQAVIKQAAVFHDTFAQALATAATAYTEAEAAN-AAMVSGALRAVTSPIASLLG 142 Query 154 PPMFNQNT----------------AIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKA 197 A+IM G+G+PIP+ +Y+ A+ P +S + Sbjct 143 GGGAAAAPAGVAAPAPAALASPFDALIMTGSGTPIPSLAYMQAVV-----PYISGTPSQL 197 Query 198 --LVTPEELYPITGVKSLPFQTSVQLGLQILDGAIWE---QINAGNHVTVFGYSQSAVIA 252 L TPE LYP+T +K LP SV G+QIL A++ I AG +V V GYSQSA+++ Sbjct 198 IPLNTPEGLYPLTQIKDLPLTQSVTTGVQILHDALFGPQGMITAGGNVAVLGYSQSAILS 257 Query 253 SLEMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDNP- 311 S+EM+ LI G +P+ + L+F L+GN M PNGG+L+R PGL++ +GL FYGATP N Sbjct 258 SMEMRQLILQG--SPNTANLSFTLLGNPMAPNGGLLSRFPGLSMPAMGLEFYGATPSNSG 315 Query 312 YPTTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQI---ASATQLPTQ 368 Y + YTL+YDGFADFPRYP+N L+D+NA GI VHT Y+ L P + + +LP Sbjct 316 YQLSQYTLQYDGFADFPRYPINFLADLNAFMGIQFVHTDYSYLDPNNLPPGYNLVELPVS 375 Query 369 GTTS--NTYYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSP 426 + YY+I LPLL PLRA+PVIG PLA LVEPNL +VNLGYGDP FGYST Sbjct 376 PANNGLEHYYMITYPGLPLLEPLRALPVIGDPLADLVEPNLTYLVNLGYGDPHFGYSTGY 435 Query 427 ANVPTPFGLFPDVPASVVADALVAGTQQGVNDFMVELPAAL-NTLPQTPMP--AFPPYVP 483 A+VPT FGLFP + A +V QQGVN F ++ A L +LP +P A P Sbjct 436 ADVPTRFGLFPSIDPVTFAGDMVGAAQQGVNAFAGDIGAMLPTSLPDFSLPAAALTGGSP 495 Query 484 T--LLPPPPPPQPATLINIADTF-----------ASVVSTGYSILLPTADLGLAFVTILP 530 T LP P P + + I DT +S + Y++ LPTAD+ T +P Sbjct 496 TAWALPTLPAPTGSPIDGIIDTLKAANTHITNAISSAAADTYAMALPTADIVNTLATKVP 555 Query 531 AYDLTLF---VNQLAAGN---LRAAIELPLAATIGLAALGGMIEFIAIVVTLADITQQL 583 +Y++ LF + +LA G+ L A P+AA + L L G + I ++ + + L Sbjct 556 SYNVNLFLDGIQELANGDPAGLVNAFGYPVAADVALLTLAGGFQTIVLLNGVESVIGDL 614 >gi|333989608|ref|YP_004522222.1| PE family protein [Mycobacterium sp. JDM601] gi|333485576|gb|AEF34968.1| PE family protein [Mycobacterium sp. JDM601] Length=490 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 199/438 (46%), Positives = 267/438 (61%), Gaps = 30/438 (6%) Query 164 IMGGTGSPIPTPSYVNAITTLFIDPVVSN---------PVVKALVTPEELYPITGVKSLP 214 IMGG+G P+P P Y+ A+T F+DP V AL TPE LYP+TGVKSLP Sbjct 52 IMGGSGLPVPPPQYLAALTDRFLDPATPKFAGQPLFPVDVTNALFTPEGLYPLTGVKSLP 111 Query 215 FQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNA-PSPSQLN 273 TS+ G++IL I ++ GN + V GYSQS VI +LE++ L+S+ + P QL+ Sbjct 112 LDTSLDQGVEILHQKIMQETADGNDLVVLGYSQSGVINALEIKQLLSMPEDERPDADQLS 171 Query 274 FILIGNEMNPNGGILAR---------IPGLNVTTLGLPFYGATP-DNPYPTTTYTLEYDG 323 F+++G+ P+GG+L+R +P L++ +LG+ F G TP D P+ T YT EYDG Sbjct 172 FVMLGSPSTPDGGLLSRFDLTSLNPNLPELSLPSLGVTFSGGTPADTPWETAFYTQEYDG 231 Query 324 FADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLP-TQGTTSNT-YYIIETE 381 FADFP+YPLN+L+DINA GI+ VH TY LT Q+ASA +LP + G T NT Y++I TE Sbjct 232 FADFPKYPLNLLADINAFMGIMFVHGTYPTLTDEQLASAIELPVSDGYTGNTQYFMIPTE 291 Query 382 HLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPA 441 +LPLL PLR G +A L++P+L V+VNLGYGD G+S PA+V TPFGLFPDV Sbjct 292 NLPLLEPLRG-SGFGNAIADLLQPSLRVLVNLGYGDIEHGWSQGPADVSTPFGLFPDVNM 350 Query 442 SVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLINIA 501 V ALV G QQG DF+ AL + + A + +L P +L +I Sbjct 351 QDVFTALVNGAQQGWTDFV----DALQNMSSS--SAADLFGGDVLGSADFVMP-SLTDIV 403 Query 502 DTFASVVSTGYSILLPTADLGLAFVTILPAYDLTLFVNQLAAGNLRAAIELPLAATIGLA 561 +T S +T Y+ LLPTAD+ A VT LPAY T+F +LA+G+L AI LPLAAT GL Sbjct 404 NTLTSASATLYATLLPTADILNALVTTLPAYTATIFAQELASGDLLNAIGLPLAATTGLV 463 Query 562 ALGGMIEFIAIVVTLADI 579 + E ++ + I Sbjct 464 TMAAGFELEVMLGAFSSI 481 >gi|183980414|ref|YP_001848705.1| PE family protein [Mycobacterium marinum M] gi|183173740|gb|ACC38850.1| PE family protein [Mycobacterium marinum M] Length=496 Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 215/468 (46%), Positives = 283/468 (61%), Gaps = 26/468 (5%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +SYV P +L AATDL GIGSAI A+AAVA PTTG+AAAAADEVS A+A LFG +GQ Sbjct 1 MSYVITAPEMLTTAATDLDGIGSAIKAASAAVAGPTTGVAAAAADEVSGAIAKLFGMFGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNT----SALVQEATAGLFKPT--SPPV 152 ++Q++ AQ +AF EFT+ LA A +++ EA+N + Q G F + Sbjct 61 EYQSVVAQASAFQTEFTRLLATAGDSYAITEASNALGALNTQAQTLLGGAFGTAAGTSAT 120 Query 153 LPPMFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITG-VK 211 P + A +MGGT P P +YV A+ LFIDP + L TPE+L+P T + Sbjct 121 GPLAAGTHVAFVMGGTAIPWPDATYVTAVQDLFIDPHFPGFTTQVLFTPEQLWPFTSNLG 180 Query 212 SLPFQTSVQLGLQILDGAIWEQI-NAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPS 270 SL F SV G+ IL A+ Q+ + N VFGYSQSA IA+ +++ +S N PSPS Sbjct 181 SLTFGQSVAQGVAILRDALSAQLSDPANTAVVFGYSQSATIATNQIRAFMSQ-LNPPSPS 239 Query 271 QLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGAT-PDNPYPTTTYTLEYDGFADFPR 329 QL+F+L GN NP+GG+L R GL + + + F GAT PD+PYPT YT +YDG A+FPR Sbjct 240 QLSFVLTGNPNNPDGGVLERFNGLYLPIVDVLFNGATPPDSPYPTAIYTAQYDGIANFPR 299 Query 330 YPLNVLSDINAVFGILTVHTTYADLTPA--------QIASATQLPTQ-GTTSNT-YYIIE 379 YPLNV+SD+NA+ G L YA LT +A+A QLPT G T NT YY++ Sbjct 300 YPLNVVSDVNAIMGFLYDEHYYAGLTSDPNAIGSGPTVANAVQLPTSPGYTGNTEYYMVL 359 Query 380 TEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDV 439 +HLPL PLR IP +G P+A L++P+L VIV+LGY D +G + A++PTP LF Sbjct 360 GQHLPLTDPLRQIPYVGTPIADLIQPSLRVIVDLGYSD--YGPGQNYADIPTPASLFSLP 417 Query 440 PASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP 487 V+ L G QGV FMV+ LPQ+ +P PYV +L P Sbjct 418 NPLAVSYYLGKGAVQGVQAFMVD----EGWLPQSYLPDTYPYVASLSP 461 >gi|240168595|ref|ZP_04747254.1| PPE family protein, PPE28 [Mycobacterium kansasii ATCC 12478] Length=641 Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 195/419 (47%), Positives = 262/419 (63%), Gaps = 30/419 (7%) Query 163 IIMGGTGSPIPTPSYVNAITTLFIDPVV---SNPVVKALVTPEELYPITGVKSLPFQTSV 219 +++GG+G PIP+ SYVN + ++ P + ++L TP + Y ITGVK+L S Sbjct 205 LVIGGSGYPIPSQSYVNTVVADYVTPTFPGFTTANAQSLYTPAQSYWITGVKTLTEDASW 264 Query 220 QLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPNAPSPSQLNFILIGN 279 GL ILD AI Q+ GN+V V G+SQ A IASLEM +L + G P+ S ++F LIG+ Sbjct 265 AQGLTILDNAIHAQLATGNNVAVQGFSQGAGIASLEMANLKAEG--VPT-SSVSFSLIGD 321 Query 280 EMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSDIN 339 MNPNGG+ +R GL + ++G F G+TP N YPT YT+EYDGFADFP+YPLN+++D N Sbjct 322 PMNPNGGLYSRFDGLTLASMGKSFPGSTPANDYPTVIYTIEYDGFADFPQYPLNLVADAN 381 Query 340 AVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYIIETEHLPLLAPLRAIPVIGPPL 399 A+ G L VH Y LTPAQ+ +A QLPTQG T+ TYY+I T++LPLL PLRA+P +G + Sbjct 382 AMLGALYVHPQYPVLTPAQVVTAVQLPTQGPTTTTYYMIPTQNLPLLEPLRALP-LGNTV 440 Query 400 AALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFPDVPASVVADALVAGTQQGVNDF 459 A L++P+L+VIVNLGYG+P +GYST PANVPTPFGLFPD VV L+ GT+QG+ Sbjct 441 ADLIQPDLKVIVNLGYGNPDYGYSTGPANVPTPFGLFPDASPGVVVADLIDGTRQGIGAA 500 Query 460 MVELPAALNTLPQTPMPAFPPYVPTLLPPPPPPQPATLI------------NIADTFASV 507 +L + P P P+ + L PP AT I N+ + S Sbjct 501 AADL-GTWHAPAGNPAPN--PFALSDL--TPPTVAATTIDGIIQGLQTGNTNLTNAVTSA 555 Query 508 VSTGYSILLPTADLGLAFVTILPAYDLTLF---VNQLAAGN---LRAAIELPLAATIGL 560 S+ Y+ LLPTAD+ A + LP+YD+ LF V Q G+ + AI P+AA GL Sbjct 556 TSSAYATLLPTADMLSAILVSLPSYDVNLFLDGVRQALDGDPAGIINAIGYPIAADTGL 614 >gi|240168169|ref|ZP_04746828.1| PE family protein [Mycobacterium kansasii ATCC 12478] Length=495 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 219/472 (47%), Positives = 286/472 (61%), Gaps = 33/472 (6%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +S+V P ++A AATD+AGI SAI+ A AA AAP +G+ AAA DEVSTA+A LF AYG Sbjct 1 MSHVLTAPEMVATAATDVAGIRSAISMANAAAAAPVSGVLAAAGDEVSTAIARLFSAYGL 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNA---------EATNTSALVQEATAGLFKPT- 148 ++QA+ Q AAFH +FT LAAAA+A+ A A+N V L T Sbjct 61 EYQAVMEQAAAFHADFTAALAAAASAYAEAEAAGAALLSRASNGLGAVNAPIRTLLGSTP 120 Query 149 ----SPPVLPPMFNQN-----TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALV 199 S L M TA+IMGGT +P+P P+YV AI +I P V + L Sbjct 121 AGTGSSGALASMMKLAAVDPLTALIMGGTDNPLPDPAYVTAINNAYIQPRFPGAVPQGLF 180 Query 200 TPEELYPITGVKSLPFQTSVQLGLQILDGAIWEQINA-GNHVTVFGYSQSAVIASLEMQH 258 TPE+ +PITG +L F SV G+ +L+ I QIN GN V VFGYSQSA IA+ E+ Sbjct 181 TPEQFWPITG--TLTFGQSVAQGVTLLNSEIDHQINTLGNSVVVFGYSQSAAIATNEINA 238 Query 259 LISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTTY 317 L++ G AP QL+F+L N NP+GGILAR PG + L +PF GATP N PYPT+ Y Sbjct 239 LMAAG--APYTGQLSFVLASNPNNPDGGILARFPGFYIPFLDVPFTGATPPNSPYPTSMY 296 Query 318 TLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-Y 375 T++Y+G A+ P+YPL+VLSD+NAV G +H TY LT AQ+ A LPT G T NT Y Sbjct 297 TIQYEGVANAPQYPLHVLSDVNAVMGYFYLHDTYQHLTAAQVGGALPLPTSPGYTGNTQY 356 Query 376 YIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGL 435 Y++ T++LPL+ P+R IP +GPPLA L++P+L V+V+LGYG+ G ANVPTP L Sbjct 357 YMLLTQNLPLVQPIRDIPYLGPPLADLIQPDLRVLVDLGYGN--IGVGADYANVPTPARL 414 Query 436 FPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP 487 + V L G QG +V+ + LP + +P PYVP+L P Sbjct 415 VQLIDPFSVGFNLAKGAVQGPQAALVD----IGLLPSSYLPDTYPYVPSLNP 462 >gi|183980415|ref|YP_001848706.1| PE family protein, PE4 [Mycobacterium marinum M] gi|183173741|gb|ACC38851.1| PE family protein, PE4 [Mycobacterium marinum M] Length=505 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 211/476 (45%), Positives = 281/476 (60%), Gaps = 32/476 (6%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +SYV P +LA+AATD+ GI + + A +A AAPT+GL AAA DEVS A+A +F AYGQ Sbjct 1 MSYVLTAPDLLASAATDVDGIAATLQVANSAAAAPTSGLLAAAQDEVSAAIAKVFSAYGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSP--PVLPP- 155 ++QA AQ +AFH EFT+ LAAA A+ AEA N S + + L T+P +L P Sbjct 61 EYQAAIAQASAFHTEFTRALAAAGAAYAQAEAANASLITAGVSDALTAITTPIQSLLGPA 120 Query 156 --------------------MFNQNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVV 195 M + A+IMGGT P+P P YV+ I +I P+ S + Sbjct 121 AIGTGGAGSAGALTAVSSTLMADPVVALIMGGTSVPLPGPGYVSDINNNYIQPLFSGAIP 180 Query 196 KALVTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASL 254 +AL TPE+ +P+T G+ +L F SV G+ +L+ AI Q+ GN V FGYSQSA I + Sbjct 181 QALFTPEQFWPVTPGLGNLTFNQSVAQGVTLLNDAINTQLALGNKVVAFGYSQSATIVNN 240 Query 255 EMQHLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATP-DNPYP 313 E+ L+++G AP P L+FI++G NP+GG+LAR PG + L + F GATP NPYP Sbjct 241 EILALMAMGTGAPDPGDLSFIMVGAPNNPDGGLLARFPGFYIPFLDVSFNGATPAANPYP 300 Query 314 TTTYTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTS 372 T+ +T +YDG A P+YPLN+LSDINA+ G VH Y DL Q A QLPT G T Sbjct 301 TSIFTAQYDGIAHAPQYPLNILSDINAIMGYFYVHGNYPDLMSGQ---AIQLPTSPGYTG 357 Query 373 NT-YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPT 431 NT YY+ T+ LPL+ P+R IP GPPLA L++P L V+V+LGY D +G S A+VPT Sbjct 358 NTDYYMYLTQDLPLVQPIRDIPYAGPPLADLIQPQLRVLVDLGYSD--YGPGLSYADVPT 415 Query 432 PFGLFPDVPASVVADALVAGTQQGVNDFMVELPAALNTLPQTPMPAFPPYVPTLLP 487 P GL V+ L+ G+ Q VE+ L P P+VP+L P Sbjct 416 PAGLLSVPNPFAVSYYLLKGSLQAPYGAAVEIGVEAGLLGPESFPDTYPWVPSLNP 471 >gi|340626444|ref|YP_004744896.1| PE family protein [Mycobacterium canettii CIPT 140010059] gi|340004634|emb|CCC43778.1| PE family protein [Mycobacterium canettii CIPT 140010059] Length=528 Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 203/401 (51%), Positives = 261/401 (66%), Gaps = 19/401 (4%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +S+VFA P ++AA A+DLA +G+A+++ATAA A PTT + AAAADEVS A+A LFGA+GQ Sbjct 1 MSFVFAVPEMVAATASDLASLGAALSEATAAAAIPTTQVLAAAADEVSAAIAELFGAHGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 +FQA+SAQ +AFH+ F + L+AAA +V+AEA N +ALV A G + S Sbjct 61 EFQALSAQASAFHDRFVRALSAAAGWYVDAEAAN-AALVDTAATGASELGS--------G 111 Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 TA+I+G TG+P P Y+ + +I P L TP + P TG+ SL + S Sbjct 112 GRTALILGSTGTPRPPFDYMQQVYDRYIAPHYLGYAFSGLYTPAQFQPWTGIPSLTYDQS 171 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPN-APSPSQLNFILI 277 V G L AI +Q+ AGN V V G+SQ A +A+LEM+HL SL APSP QL+F+L+ Sbjct 172 VAEGAGYLHTAIMQQVAAGNDVVVLGFSQGASVATLEMRHLASLPAGVAPSPDQLSFVLL 231 Query 278 GNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSD 337 GN NPNGGILAR PGL + +LGL F GATPD Y TT YT +YDGFADFP+YPLN+L+D Sbjct 232 GNPNNPNGGILARFPGLYLQSLGLTFNGATPDTDYATTIYTTQYDGFADFPKYPLNILAD 291 Query 338 INAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYI-IETEHLPLLAPLRAIPVIG 396 +NA+ GI H+ Y LTP Q+AS LP +NT YI + E LPLL PLR I + Sbjct 292 VNALLGIYYSHSLYYGLTPEQVASGIVLPVSSPDTNTTYILLPNEDLPLLQPLRGI--VP 349 Query 397 PPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFP 437 PL L+EP+L I+ LGY R GY A+VPTP LFP Sbjct 350 EPLLDLIEPDLRAIIELGY--DRTGY----ADVPTPAALFP 384 >gi|15840887|ref|NP_335924.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|31792624|ref|NP_855117.1| PE family protein [Mycobacterium bovis AF2122/97] gi|57116862|ref|YP_177810.1| PE family protein [Mycobacterium tuberculosis H37Rv] 71 more sequence titles Length=528 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 203/401 (51%), Positives = 261/401 (66%), Gaps = 19/401 (4%) Query 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 +S+VFA P ++AA A+DLA +G+A+++ATAA A PTT + AAAADEVS A+A LFGA+GQ Sbjct 1 MSFVFAVPEMVAATASDLASLGAALSEATAAAAIPTTQVLAAAADEVSAAIAELFGAHGQ 60 Query 99 QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGLFKPTSPPVLPPMFN 158 +FQA+SAQ +AFH+ F + L+AAA +V+AEA N +ALV A G + S Sbjct 61 EFQALSAQASAFHDRFVRALSAAAGWYVDAEAAN-AALVDTAATGASELGS--------G 111 Query 159 QNTAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKALVTPEELYPITGVKSLPFQTS 218 TA+I+G TG+P P Y+ + +I P L TP + P TG+ SL + S Sbjct 112 GRTALILGSTGTPRPPFDYMQQVYDRYIAPHYLGYAFSGLYTPAQFQPWTGIPSLTYDQS 171 Query 219 VQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQHLISLGPN-APSPSQLNFILI 277 V G L AI +Q+ AGN V V G+SQ A +A+LEM+HL SL APSP QL+F+L+ Sbjct 172 VAEGAGYLHTAIMQQVAAGNDVVVLGFSQGASVATLEMRHLASLPAGVAPSPDQLSFVLL 231 Query 278 GNEMNPNGGILARIPGLNVTTLGLPFYGATPDNPYPTTTYTLEYDGFADFPRYPLNVLSD 337 GN NPNGGILAR PGL + +LGL F GATPD Y TT YT +YDGFADFP+YPLN+L+D Sbjct 232 GNPNNPNGGILARFPGLYLQSLGLTFNGATPDTDYATTIYTTQYDGFADFPKYPLNILAD 291 Query 338 INAVFGILTVHTTYADLTPAQIASATQLPTQGTTSNTYYI-IETEHLPLLAPLRAIPVIG 396 +NA+ GI H+ Y LTP Q+AS LP +NT YI + E LPLL PLR I + Sbjct 292 VNALLGIYYSHSLYYGLTPEQVASGIVLPVSSPDTNTTYILLPNEDLPLLQPLRGI--VP 349 Query 397 PPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGLFP 437 PL L+EP+L I+ LGY R GY A+VPTP LFP Sbjct 350 EPLLDLIEPDLRAIIELGYD--RTGY----ADVPTPAALFP 384 Lambda K H 0.318 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1334129177154 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40