BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0160c

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839540|ref|NP_334577.1|  PE family protein [Mycobacterium tu...  1000    0.0   
gi|339630242|ref|YP_004721884.1|  PE family protein [Mycobacteriu...   999    0.0   
gi|289568058|ref|ZP_06448285.1|  PE family protein [Mycobacterium...   998    0.0   
gi|31791338|ref|NP_853831.1|  PE family protein [Mycobacterium bo...   997    0.0   
gi|254549098|ref|ZP_05139545.1|  PE family protein [Mycobacterium...   997    0.0   
gi|289441535|ref|ZP_06431279.1|  PE family protein [Mycobacterium...   997    0.0   
gi|340625197|ref|YP_004743649.1|  PE family protein [Mycobacteriu...   984    0.0   
gi|289764277|ref|ZP_06523655.1|  PE family protein [Mycobacterium...   746    0.0   
gi|289572740|ref|ZP_06452967.1|  PE family protein [Mycobacterium...   733    0.0   
gi|240168173|ref|ZP_04746832.1|  PE family protein [Mycobacterium...   666    0.0   
gi|183980415|ref|YP_001848706.1|  PE family protein, PE4 [Mycobac...   660    0.0   
gi|118616775|ref|YP_905107.1|  PE family protein [Mycobacterium u...   653    0.0   
gi|240168169|ref|ZP_04746828.1|  PE family protein [Mycobacterium...   571    1e-160
gi|183980414|ref|YP_001848705.1|  PE family protein [Mycobacteriu...   481    2e-133
gi|240168172|ref|ZP_04746831.1|  PE family protein [Mycobacterium...   463    4e-128
gi|298527551|ref|ZP_07014960.1|  PE family protein [Mycobacterium...   453    4e-125
gi|148821351|ref|YP_001286105.1|  PE family protein [Mycobacteriu...   453    4e-125
gi|340625196|ref|YP_004743648.1|  PE family protein [Mycobacteriu...   452    6e-125
gi|57116696|ref|YP_177697.1|  PE family protein [Mycobacterium tu...   451    1e-124
gi|31791337|ref|NP_853830.1|  PE family protein [Mycobacterium bo...   450    3e-124
gi|15839539|ref|NP_334576.1|  PE family protein [Mycobacterium tu...   449    5e-124
gi|240168166|ref|ZP_04746825.1|  PE family protein [Mycobacterium...   442    8e-122
gi|183980413|ref|YP_001848704.1|  PE-PGRS family protein [Mycobac...   403    4e-110
gi|240168171|ref|ZP_04746830.1|  PE-PGRS family protein [Mycobact...   401    2e-109
gi|240168170|ref|ZP_04746829.1|  PE-PGRS family protein [Mycobact...   366    5e-99 
gi|289568057|ref|ZP_06448284.1|  predicted protein [Mycobacterium...   348    1e-93 
gi|183980401|ref|YP_001848692.1|  PE family protein [Mycobacteriu...   334    2e-89 
gi|183983956|ref|YP_001852247.1|  PPE family protein [Mycobacteri...   303    5e-80 
gi|183980402|ref|YP_001848693.1|  PE family protein [Mycobacteriu...   296    5e-78 
gi|183983416|ref|YP_001851707.1|  PE family protein [Mycobacteriu...   294    2e-77 
gi|15839533|ref|NP_334570.1|  PE family protein [Mycobacterium tu...   288    1e-75 
gi|183980400|ref|YP_001848691.1|  PE family protein [Mycobacteriu...   286    9e-75 
gi|253797071|ref|YP_003030072.1|  PE family protein [Mycobacteriu...   281    2e-73 
gi|240168157|ref|ZP_04746816.1|  PE family protein [Mycobacterium...   281    3e-73 
gi|240173252|ref|ZP_04751910.1|  PPE family protein [Mycobacteriu...   279    8e-73 
gi|340625188|ref|YP_004743640.1|  pe family protein [Mycobacteriu...   277    3e-72 
gi|308231479|ref|ZP_07412575.2|  PE family protein [Mycobacterium...   272    8e-71 
gi|31791329|ref|NP_853822.1|  PE family protein [Mycobacterium bo...   272    8e-71 
gi|289572730|ref|ZP_06452957.1|  PE family protein [Mycobacterium...   272    8e-71 
gi|57116694|ref|YP_177695.1|  PE family protein [Mycobacterium tu...   272    8e-71 
gi|240171801|ref|ZP_04750460.1|  PE-PGRS family protein, PE16 [My...   270    4e-70 
gi|308369315|ref|ZP_07417319.2|  PE family protein [Mycobacterium...   270    5e-70 
gi|306805944|ref|ZP_07442612.1|  PE family protein [Mycobacterium...   269    7e-70 
gi|183984291|ref|YP_001852582.1|  PE family protein [Mycobacteriu...   269    9e-70 
gi|240168158|ref|ZP_04746817.1|  PE family protein [Mycobacterium...   267    4e-69 
gi|183980403|ref|YP_001848694.1|  PE family protein [Mycobacteriu...   266    6e-69 
gi|340625187|ref|YP_004743639.1|  PE family protein [Mycobacteriu...   266    7e-69 
gi|340626444|ref|YP_004744896.1|  PE family protein [Mycobacteriu...   260    4e-67 
gi|15840887|ref|NP_335924.1|  PE family protein [Mycobacterium tu...   260    4e-67 
gi|183983451|ref|YP_001851742.1|  PE family protein [Mycobacteriu...   258    2e-66 


>gi|15839540|ref|NP_334577.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57116697|ref|YP_177698.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148659924|ref|YP_001281447.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 55 more sequence titles
 Length=502

 Score = 1000 bits (2586),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/502 (100%), Positives = 502/502 (100%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|339630242|ref|YP_004721884.1| PE family protein [Mycobacterium africanum GM041182]
 gi|339329598|emb|CCC25234.1| PE family protein [Mycobacterium africanum GM041182]
Length=502

 Score =  999 bits (2582),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/502 (99%), Positives = 501/502 (99%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNT VNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTTVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|289568058|ref|ZP_06448285.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289748636|ref|ZP_06508014.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289756224|ref|ZP_06515602.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289541811|gb|EFD45460.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289689223|gb|EFD56652.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289696811|gb|EFD64240.1| PE family protein [Mycobacterium tuberculosis EAS054]
Length=502

 Score =  998 bits (2579),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/502 (99%), Positives = 501/502 (99%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDIN AFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINNAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|31791338|ref|NP_853831.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121636072|ref|YP_976295.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988545|ref|YP_002643232.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31616923|emb|CAD93029.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491719|emb|CAL70180.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224771658|dbj|BAH24464.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341600088|emb|CCC62757.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=502

 Score =  997 bits (2578),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/502 (99%), Positives = 500/502 (99%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGR PLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRTPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNT VNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTTVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|254549098|ref|ZP_05139545.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=502

 Score =  997 bits (2577),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/502 (99%), Positives = 501/502 (99%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGG YADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGYYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|289441535|ref|ZP_06431279.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289414454|gb|EFD11694.1| PE family protein [Mycobacterium tuberculosis T46]
Length=502

 Score =  997 bits (2577),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/502 (99%), Positives = 501/502 (99%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDIN AFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINNAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFG+PQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGEPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|340625197|ref|YP_004743649.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340003387|emb|CCC42507.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=502

 Score =  984 bits (2544),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/502 (99%), Positives = 498/502 (99%), Gaps = 0/502 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+LVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSYLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTL AAGNAYAHAEAANAA VSHALDTINAPIRTLLG APLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLAAAGNAYAHAEAANAAWVSHALDTINAPIRTLLGLAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLP+IAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPSIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLAL NKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALGNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420
            FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP
Sbjct  361  FLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIP  420

Query  421  NPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480
            NPFAVTYYLIKGSLQAPYGA+VEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT
Sbjct  421  NPFAVTYYLIKGSLQAPYGAVVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVT  480

Query  481  LLSLMSGGLGNILHLIPPPVFT  502
            LLSLMSGGLGNILHLIPPPVFT
Sbjct  481  LLSLMSGGLGNILHLIPPPVFT  502


>gi|289764277|ref|ZP_06523655.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289711783|gb|EFD75799.1| PE family protein [Mycobacterium tuberculosis GM 1503]
Length=374

 Score =  746 bits (1927),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 373/374 (99%), Positives = 374/374 (100%), Gaps = 0/374 (0%)

Query  129  LPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLFTPEQFWPV  188
            +PAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLFTPEQFWPV
Sbjct  1    MPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLFTPEQFWPV  60

Query  189  TPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINSLMAMGSPN  248
            TPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINSLMAMGSPN
Sbjct  61   TPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINSLMAMGSPN  120

Query  249  PDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTAQYDGIAHA  308
            PDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTAQYDGIAHA
Sbjct  121  PDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTAQYDGIAHA  180

Query  309  PQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYMFLTQDLPL  368
            PQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYMFLTQDLPL
Sbjct  181  PQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYMFLTQDLPL  240

Query  369  LQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIPNPFAVTYY  428
            LQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIPNPFAVTYY
Sbjct  241  LQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIPNPFAVTYY  300

Query  429  LIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVTLLSLMSGG  488
            LIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVTLLSLMSGG
Sbjct  301  LIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVTLLSLMSGG  360

Query  489  LGNILHLIPPPVFT  502
            LGNILHLIPPPVFT
Sbjct  361  LGNILHLIPPPVFT  374


>gi|289572740|ref|ZP_06452967.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289537171|gb|EFD41749.1| PE family protein [Mycobacterium tuberculosis K85]
Length=369

 Score =  733 bits (1893),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 368/369 (99%), Positives = 368/369 (99%), Gaps = 0/369 (0%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR
Sbjct  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP
Sbjct  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF
Sbjct  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQFWPVTPDLGNLTFNQSVTEGVALLNT VNNQLALDNKVVAFGYSQSATIINNYINS
Sbjct  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTTVNNQLALDNKVVAFGYSQSATIINNYINS  240

Query  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300
            LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA
Sbjct  241  LMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTA  300

Query  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360
            QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM
Sbjct  301  QYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYM  360

Query  361  FLTQDLPLL  369
            FLTQDLPLL
Sbjct  361  FLTQDLPLL  369


>gi|240168173|ref|ZP_04746832.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=502

 Score =  666 bits (1718),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 363/509 (72%), Positives = 416/509 (82%), Gaps = 16/509 (3%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS++  AP++LA+AAA VD IA+ + AA+ AAAGPT NLLAAAGDEVSAATAALF+AY +
Sbjct  1    MSYVFAAPELLASAAADVDGIAAAIGAASVAAAGPTSNLLAAAGDEVSAATAALFNAYAQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARV--------SHALDTINAPIRTL  112
            EYQAVV+QAAAF  EFTRTL  A  AYA AEAANAA +        S+A   + API++L
Sbjct  61   EYQAVVRQAAAFQQEFTRTLAVAAGAYAQAEAANAALLNGALNGALSNARTAVTAPIQSL  120

Query  113  LGRAPLSPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFP  172
            L  A        G GG  A+  + A +   ALIMGGT NP PDP+Y+  IN  +IQ LFP
Sbjct  121  LTSA------GVGTGGPSALTAVPAAASQIALIMGGTGNPDPDPKYLNRINVKYIQHLFP  174

Query  173  GAVSQGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSAT  232
            GA+ + LFTPEQFWPVTP LGN+TFNQSV +GV  LN A+N Q+AL NKVVAFGYSQSAT
Sbjct  175  GAIPKALFTPEQFWPVTPQLGNMTFNQSVAQGVTALNNAINAQIALGNKVVAFGYSQSAT  234

Query  233  IINNYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSP  292
            I+NN IN+L++ G+P+ +DISFVMIG+ N P GG+L+RFPGFYIPFLDVPFNGATP NSP
Sbjct  235  IVNNEINALISAGAPHANDISFVMIGNPNTPDGGILSRFPGFYIPFLDVPFNGATPPNSP  294

Query  293  YPTHIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGY  352
            Y T IYTAQYDGIA+AP++PL ILSDINAFMGYFYVHNTYP L A+++ NAVPLPTSPGY
Sbjct  295  YATTIYTAQYDGIANAPRYPLNILSDINAFMGYFYVHNTYPTLSASEIANAVPLPTSPGY  354

Query  353  TGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPT  412
             GNTQYYM LTQDLPL+QPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGP  NYA++PT
Sbjct  355  AGNTQYYMLLTQDLPLVQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGP--NYANVPT  412

Query  413  PAGLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNF  472
            PAGL SIPNPFAV YYL  GSLQAPY A VEIGVEAG  GPEWFP +YPW+PSINPGL+F
Sbjct  413  PAGLLSIPNPFAVGYYLALGSLQAPYAAAVEIGVEAGFWGPEWFPQAYPWIPSINPGLHF  472

Query  473  YFGQPQVTLLSLMSGGLGNILHLIPPPVF  501
            Y GQP+VTLLSL SGGLG++LHLIPPPVF
Sbjct  473  YIGQPEVTLLSLASGGLGSLLHLIPPPVF  501


>gi|183980415|ref|YP_001848706.1| PE family protein, PE4 [Mycobacterium marinum M]
 gi|183173741|gb|ACC38851.1| PE family protein, PE4 [Mycobacterium marinum M]
Length=505

 Score =  660 bits (1703),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 367/507 (73%), Positives = 421/507 (84%), Gaps = 9/507 (1%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++TAPD+LA+AA  VD IA+TL+ AN+AAA PT  LLAAA DEVSAA A +FSAYG+
Sbjct  1    MSYVLTAPDLLASAATDVDGIAATLQVANSAAAAPTSGLLAAAQDEVSAAIAKVFSAYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN----AARVSHALDTINAPIRTLLGRA  116
            EYQA + QA+AFH+EFTR L AAG AYA AEAAN     A VS AL  I  PI++LLG A
Sbjct  61   EYQAAIAQASAFHTEFTRALAAAGAAYAQAEAANASLITAGVSDALTAITTPIQSLLGPA  120

Query  117  PLSPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVS  176
             +   G+  AG L A++      P+ ALIMGGT+ PLP P YV+DIN  +IQ LF GA+ 
Sbjct  121  AIGTGGAGSAGALTAVSSTLMADPVVALIMGGTSVPLPGPGYVSDINNNYIQPLFSGAIP  180

Query  177  QGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINN  236
            Q LFTPEQFWPVTP LGNLTFNQSV +GV LLN A+N QLAL NKVVAFGYSQSATI+NN
Sbjct  181  QALFTPEQFWPVTPGLGNLTFNQSVAQGVTLLNDAINTQLALGNKVVAFGYSQSATIVNN  240

Query  237  YINSLMAMGS--PNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYP  294
             I +LMAMG+  P+P D+SF+M+G+ NNP GGLLARFPGFYIPFLDV FNGATPA +PYP
Sbjct  241  EILALMAMGTGAPDPGDLSFIMVGAPNNPDGGLLARFPGFYIPFLDVSFNGATPAANPYP  300

Query  295  THIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTG  354
            T I+TAQYDGIAHAPQ+PL ILSDINA MGYFYVH  YP+LM+ Q   A+ LPTSPGYTG
Sbjct  301  TSIFTAQYDGIAHAPQYPLNILSDINAIMGYFYVHGNYPDLMSGQ---AIQLPTSPGYTG  357

Query  355  NTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPA  414
            NT YYM+LTQDLPL+QPIRDIPYAGPP+ADL QPQLRVLVDLGY+DYGPG +YAD+PTPA
Sbjct  358  NTDYYMYLTQDLPLVQPIRDIPYAGPPLADLIQPQLRVLVDLGYSDYGPGLSYADVPTPA  417

Query  415  GLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYF  474
            GL S+PNPFAV+YYL+KGSLQAPYGA VEIGVEAGL+GPE FPD+YPWVPS+NPGLNFY 
Sbjct  418  GLLSVPNPFAVSYYLLKGSLQAPYGAAVEIGVEAGLLGPESFPDTYPWVPSLNPGLNFYL  477

Query  475  GQPQVTLLSLMSGGLGNILHLIPPPVF  501
            GQP VTLLSL+SGGLG+I HLIPPPVF
Sbjct  478  GQPSVTLLSLLSGGLGDIFHLIPPPVF  504


>gi|118616775|ref|YP_905107.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118568885|gb|ABL03636.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=505

 Score =  653 bits (1685),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 365/507 (72%), Positives = 419/507 (83%), Gaps = 9/507 (1%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++TAPD+LA+AA  VD IA+TL+ AN+AAA  T  LLAAA DEVSAA A +FSAYG+
Sbjct  1    MSYVLTAPDLLASAATDVDGIAATLQVANSAAAALTSGLLAAAQDEVSAAIAKVFSAYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN----AARVSHALDTINAPIRTLLGRA  116
            EYQA + QA+AFH+EFTR L AAG AYA AEAAN     A VS AL  I  PI++LLG A
Sbjct  61   EYQAAIAQASAFHTEFTRALAAAGAAYAQAEAANASLITAGVSDALTAITTPIQSLLGPA  120

Query  117  PLSPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVS  176
             +   G+  AG L A++      P+ ALIMGGT+ PLP P YV+DIN  +IQ LF GA+ 
Sbjct  121  AIGTGGAGSAGALTAVSSTLMADPVVALIMGGTSVPLPGPGYVSDINNNYIQPLFSGAIP  180

Query  177  QGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINN  236
            Q LFTPEQFWPVTP LGNLTFNQSV +GV LLN A+N QLAL NKVVAFGYSQSATI+NN
Sbjct  181  QALFTPEQFWPVTPGLGNLTFNQSVAQGVTLLNDAINTQLALGNKVVAFGYSQSATIVNN  240

Query  237  YINSLMAMGS--PNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYP  294
             I +LMAMG+  P+P D+SF+M+G+ NNP GGLLARFPGFYIPFLDV FNGATPA +PYP
Sbjct  241  EILALMAMGTGAPDPGDLSFIMVGAPNNPDGGLLARFPGFYIPFLDVSFNGATPAANPYP  300

Query  295  THIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTG  354
            T I+TAQYDGIAHAPQ+ L ILSDINA MGYFYVH  YP+LM+ Q   A+ LPTSPGYTG
Sbjct  301  TSIFTAQYDGIAHAPQYRLNILSDINAIMGYFYVHGNYPDLMSGQ---AIQLPTSPGYTG  357

Query  355  NTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPA  414
            NT YYM+LTQDLPL+QPIRDIPYAGPP+ADL QPQLRVLVDLGY+DYGPG +YAD+PTPA
Sbjct  358  NTDYYMYLTQDLPLVQPIRDIPYAGPPLADLIQPQLRVLVDLGYSDYGPGLSYADVPTPA  417

Query  415  GLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYF  474
            GL S+PNPFAV+YYL+KGSLQAPYGA VEIGVEAGL+GPE FPD+YPWVPS+NPGLNFY 
Sbjct  418  GLLSVPNPFAVSYYLLKGSLQAPYGAAVEIGVEAGLLGPESFPDTYPWVPSLNPGLNFYL  477

Query  475  GQPQVTLLSLMSGGLGNILHLIPPPVF  501
            GQP VTLLSL+SGGLG+I HLIPPPVF
Sbjct  478  GQPSVTLLSLLSGGLGDIFHLIPPPVF  504


>gi|240168169|ref|ZP_04746828.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=495

 Score =  571 bits (1471),  Expect = 1e-160, Method: Compositional matrix adjust.
 Identities = 316/502 (63%), Positives = 385/502 (77%), Gaps = 14/502 (2%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSH++TAP+M+ATAA  V  I S +  ANAAAA P   +LAAAGDEVS A A LFSAYG 
Sbjct  1    MSHVLTAPEMVATAATDVAGIRSAISMANAAAAAPVSGVLAAAGDEVSTAIARLFSAYGL  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAA---RVSHALDTINAPIRTLLGRAP  117
            EYQAV++QAAAFH++FT  L AA +AYA AEAA AA   R S+ L  +NAPIRTLLG   
Sbjct  61   EYQAVMEQAAAFHADFTAALAAAASAYAEAEAAGAALLSRASNGLGAVNAPIRTLLGS--  118

Query  118  LSPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQ  177
             +P G+  +G L ++ +LAA  P+TALIMGGT+NPLPDP YVT IN A+IQ  FPGAV Q
Sbjct  119  -TPAGTGSSGALASMMKLAAVDPLTALIMGGTDNPLPDPAYVTAINNAYIQPRFPGAVPQ  177

Query  178  GLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQL-ALDNKVVAFGYSQSATIINN  236
            GLFTPEQFWP+T   G LTF QSV +GV LLN+ +++Q+  L N VV FGYSQSA I  N
Sbjct  178  GLFTPEQFWPIT---GTLTFGQSVAQGVTLLNSEIDHQINTLGNSVVVFGYSQSAAIATN  234

Query  237  YINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTH  296
             IN+LMA G+P    +SFV+  + NNP GG+LARFPGFYIPFLDVPF GATP NSPYPT 
Sbjct  235  EINALMAAGAPYTGQLSFVLASNPNNPDGGILARFPGFYIPFLDVPFTGATPPNSPYPTS  294

Query  297  IYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNT  356
            +YT QY+G+A+APQ+PL +LSD+NA MGYFY+H+TY  L A QV  A+PLPTSPGYTGNT
Sbjct  295  MYTIQYEGVANAPQYPLHVLSDVNAVMGYFYLHDTYQHLTAAQVGGALPLPTSPGYTGNT  354

Query  357  QYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGL  416
            QYYM LTQ+LPL+QPIRDIPY GPP+ADL QP LRVLVDLGY + G G +YA++PTPA L
Sbjct  355  QYYMLLTQNLPLVQPIRDIPYLGPPLADLIQPDLRVLVDLGYGNIGVGADYANVPTPARL  414

Query  417  FSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQ  476
              + +PF+V + L KG++Q P  A+V+I    GL+   + PD+YP+VPS+NPGL+  FGQ
Sbjct  415  VQLIDPFSVGFNLAKGAVQGPQAALVDI----GLLPSSYLPDTYPYVPSLNPGLSVSFGQ  470

Query  477  PQVTLLSLMSGGLGNILHLIPP  498
            P VT LS++S  LG+ILHLIPP
Sbjct  471  PSVTGLSVLSCTLGSILHLIPP  492


>gi|183980414|ref|YP_001848705.1| PE family protein [Mycobacterium marinum M]
 gi|183173740|gb|ACC38850.1| PE family protein [Mycobacterium marinum M]
Length=496

 Score =  481 bits (1237),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 270/501 (54%), Positives = 340/501 (68%), Gaps = 27/501 (5%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++TAP+ML TAA  +D I S ++AA+AA AGPT  + AAA DEVS A A LF  +G+
Sbjct  1    MSYVITAPEMLTTAATDLDGIGSAIKAASAAVAGPTTGVAAAAADEVSGAIAKLFGMFGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQ+VV QA+AF +EFTR L  AG++YA  EA+NA      L  +N   +TLLG A  + 
Sbjct  61   EYQSVVAQASAFQTEFTRLLATAGDSYAITEASNA------LGALNTQAQTLLGGAFGTA  114

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G+S  G L A   +A        +MGGT  P PD  YVT +   FI   FPG  +Q LF
Sbjct  115  AGTSATGPLAAGTHVA-------FVMGGTAIPWPDATYVTAVQDLFIDPHFPGFTTQVLF  167

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLAL-DNKVVAFGYSQSATIINNYIN  239
            TPEQ WP T +LG+LTF QSV +GVA+L  A++ QL+   N  V FGYSQSATI  N I 
Sbjct  168  TPEQLWPFTSNLGSLTFGQSVAQGVAILRDALSAQLSDPANTAVVFGYSQSATIATNQIR  227

Query  240  SLMA-MGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIY  298
            + M+ +  P+P  +SFV+ G+ NNP GG+L RF G Y+P +DV FNGATP +SPYPT IY
Sbjct  228  AFMSQLNPPSPSQLSFVLTGNPNNPDGGVLERFNGLYLPIVDVLFNGATPPDSPYPTAIY  287

Query  299  TAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMAT--------QVDNAVPLPTSP  350
            TAQYDGIA+ P++PL ++SD+NA MG+ Y  + Y  L +          V NAV LPTSP
Sbjct  288  TAQYDGIANFPRYPLNVVSDVNAIMGFLYDEHYYAGLTSDPNAIGSGPTVANAVQLPTSP  347

Query  351  GYTGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADI  410
            GYTGNT+YYM L Q LPL  P+R IPY G PIADL QP LRV+VDLGY+DYGPG NYADI
Sbjct  348  GYTGNTEYYMVLGQHLPLTDPLRQIPYVGTPIADLIQPSLRVIVDLGYSDYGPGQNYADI  407

Query  411  PTPAGLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGL  470
            PTPA LFS+PNP AV+YYL KG++Q     +    V+ G +   + PD+YP+V S++PGL
Sbjct  408  PTPASLFSLPNPLAVSYYLGKGAVQ----GVQAFMVDEGWLPQSYLPDTYPYVASLSPGL  463

Query  471  NFYFGQPQVTLLSLMSGGLGN  491
            N Y GQP VT LSL++G LG 
Sbjct  464  NVYLGQPSVTGLSLLTGALGT  484


>gi|240168172|ref|ZP_04746831.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=493

 Score =  463 bits (1191),  Expect = 4e-128, Method: Compositional matrix adjust.
 Identities = 279/503 (56%), Positives = 340/503 (68%), Gaps = 18/503 (3%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+L+TAP+M++ AA  +D IA+ L AANAAAAGPT  LLAAA DEVS A A LF A+G+
Sbjct  1    MSYLLTAPEMVSAAATDLDGIAAALYAANAAAAGPTTGLLAAAEDEVSRAVATLFGAFGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAVV  AAAFH+EFTR L AA    A A A   A  S+AL      ++TLL   PL P
Sbjct  61   EYQAVVTHAAAFHTEFTRALAAA----ASAYAQAEATASNALSAFGTQVQTLL--TPLLP  114

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            NG +GA   P+I  L  +    A IMGGT  P PD  YVT     FIQ  FPG +S  L 
Sbjct  115  NGGAGAINPPSITSLGTQ---VAFIMGGTGIPDPDAMYVTGAQTLFIQPRFPGYLSNALH  171

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLAL-DNKVVAFGYSQSATIINNYIN  239
            TPEQFWP TP+LGNLTF +SV EGVA+L+ A+  QL+   N  V +GYSQSA I    I 
Sbjct  172  TPEQFWPTTPNLGNLTFGRSVAEGVAILSNALTTQLSTAGNSAVVYGYSQSAAIATIEIR  231

Query  240  SLMAMGSP-NPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIY  298
             LMA  +P +P D+ FV+ G+ NNP GG+L RF G Y+P LDV FNGATP +SPYPT IY
Sbjct  232  HLMAQVTPPSPSDLGFVLTGNPNNPNGGVLQRFTGLYVPVLDVLFNGATPPDSPYPTVIY  291

Query  299  TAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQY  358
            T QYDG  + PQ+PL +L+D+NA +G     + Y  L   QV NAV LPTSPGY+GNT+Y
Sbjct  292  TNQYDGTGNFPQYPLNLLADLNAVIGIVDGTHYYVGLPPDQVANAVHLPTSPGYSGNTEY  351

Query  359  YMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFS  418
            ++ LTQ LPL   IR IPY G P+A+L QP LRVLVDLGY+DYGPG +YADIPTPA   S
Sbjct  352  FLGLTQKLPLTSLIRPIPYVGTPLAELVQPDLRVLVDLGYSDYGPGLSYADIPTPASFLS  411

Query  419  IPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQ  478
            +PNPFAV+YYL KG++Q    ++V +    G + P + P  YP+ PS+ PGLNF+ GQP 
Sbjct  412  VPNPFAVSYYLAKGAVQGVQSSMVSL----GWLPPSYIPTGYPYAPSVAPGLNFFVGQPS  467

Query  479  VTLLSLMSGGLGNI---LHLIPP  498
            VT LSL++G LG     L  IPP
Sbjct  468  VTGLSLLTGALGTAAKDLGWIPP  490


>gi|298527551|ref|ZP_07014960.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298497345|gb|EFI32639.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
Length=468

 Score =  453 bits (1165),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 268/501 (54%), Positives = 340/501 (68%), Gaps = 38/501 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++ AP+MLATAAA VD I S +RAA+A+AAGPT  LLAAA DEVS+A AALFS Y R
Sbjct  1    MSYVIAAPEMLATAAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E Q V+KQAAAFH EFTR L AAG AYA A+A+N A +S                     
Sbjct  61   ECQEVLKQAAAFHGEFTRALAAAGAAYAQAQASNTAAMS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G++G+ G      + + +P+TAL+MGGT  P+     +  I+ A+I+ +F        +
Sbjct  100  -GTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLAIIDSAYIRPIFGPNNPVAQY  158

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  159  TPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIRA  215

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+PFLD+ FNGATP +SPY T++
Sbjct  216  LMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPDSPYQTYM  275

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT 
Sbjct  276  YTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNTH  334

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQPIR IP+ G PIA+L QP LRVLVDLGY     G  YAD+PTPA LF
Sbjct  335  YYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGY-----GYGYADVPTPASLF  389

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL F FGQ 
Sbjct  390  APINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMFNFGQS  445

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LS++SG LG++  LIPP
Sbjct  446  SVTELSVLSGALGSVARLIPP  466


>gi|148821351|ref|YP_001286105.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253797081|ref|YP_003030082.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254366611|ref|ZP_04982655.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 49 more sequence titles
 Length=468

 Score =  453 bits (1165),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 269/501 (54%), Positives = 340/501 (68%), Gaps = 38/501 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++ AP+MLATAAA VD I S +RAA+A+AAGPT  LLAAA DEVS+A AALFS Y R
Sbjct  1    MSYVIAAPEMLATAAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E Q V+KQAAAFH EFTR L AAG AYA AEA+N A +S                     
Sbjct  61   ECQEVLKQAAAFHGEFTRALAAAGAAYAQAEASNTAAMS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G++G+ G      + + +P+TAL+MGGT  P+     +  I+ A+I+ +F        +
Sbjct  100  -GTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLAIIDSAYIRPIFGPNNPVAQY  158

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  159  TPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIRA  215

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+PFLD+ FNGATP +SPY T++
Sbjct  216  LMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPDSPYQTYM  275

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT 
Sbjct  276  YTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNTH  334

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQPIR IP+ G PIA+L QP LRVLVDLGY     G  YAD+PTPA LF
Sbjct  335  YYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGY-----GYGYADVPTPASLF  389

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL F FGQ 
Sbjct  390  APINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMFNFGQS  445

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LS++SG LG++  LIPP
Sbjct  446  SVTELSVLSGALGSVARLIPP  466


>gi|340625196|ref|YP_004743648.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340003386|emb|CCC42506.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=468

 Score =  452 bits (1163),  Expect = 6e-125, Method: Compositional matrix adjust.
 Identities = 269/501 (54%), Positives = 339/501 (68%), Gaps = 38/501 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++ AP+MLATAAA VD I S +RAA+A+AAGPT  LLAAA DEVS+A AALFS Y R
Sbjct  1    MSYVIAAPEMLATAAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E Q V+KQAAAFH EFTR L AAG AYA AEA+N A +S                     
Sbjct  61   ECQEVLKQAAAFHGEFTRALAAAGAAYAQAEASNTAAMS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G++G+ G      + + +P+TAL+MGGT  P+     +  I+ A+I+ +F        +
Sbjct  100  -GTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLAIIDSAYIRPIFGPNNPVAQY  158

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  159  TPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIRA  215

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+PFLD+ FNGATP NSPY T++
Sbjct  216  LMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPNSPYQTYM  275

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT 
Sbjct  276  YTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNTH  334

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQPIR IP+ G PIA+L QP LRVLVDLGY     G  YAD+PTPA LF
Sbjct  335  YYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGY-----GYGYADVPTPASLF  389

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL   FGQ 
Sbjct  390  APINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMINFGQS  445

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LS++SG LG++  LIPP
Sbjct  446  SVTELSVLSGALGSVARLIPP  466


>gi|57116696|ref|YP_177697.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148659923|ref|YP_001281446.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|167970280|ref|ZP_02552557.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 11 more sequence titles
 Length=468

 Score =  451 bits (1160),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 268/501 (54%), Positives = 339/501 (68%), Gaps = 38/501 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++ AP+MLAT AA VD I S +RAA+A+AAGPT  LLAAA DEVS+A AALFS Y R
Sbjct  1    MSYVIAAPEMLATTAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E Q V+KQAAAFH EFTR L AAG AYA AEA+N A +S                     
Sbjct  61   ECQEVLKQAAAFHGEFTRALAAAGAAYAQAEASNTAAMS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G++G+ G      + + +P+TAL+MGGT  P+     +  I+ A+I+ +F        +
Sbjct  100  -GTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLAIIDSAYIRPIFGPNNPVAQY  158

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  159  TPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIRA  215

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+PFLD+ FNGATP +SPY T++
Sbjct  216  LMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPDSPYQTYM  275

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT 
Sbjct  276  YTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNTH  334

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQPIR IP+ G PIA+L QP LRVLVDLGY     G  YAD+PTPA LF
Sbjct  335  YYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGY-----GYGYADVPTPASLF  389

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL F FGQ 
Sbjct  390  APINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMFNFGQS  445

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LS++SG LG++  LIPP
Sbjct  446  SVTELSVLSGALGSVARLIPP  466


>gi|31791337|ref|NP_853830.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121636071|ref|YP_976294.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988544|ref|YP_002643231.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31616922|emb|CAD93028.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491718|emb|CAL70179.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224771657|dbj|BAH24463.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341600087|emb|CCC62756.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=468

 Score =  450 bits (1157),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 268/501 (54%), Positives = 339/501 (68%), Gaps = 38/501 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++ AP+MLATAAA VD I S +RAA+A+AAGPT  LLAAA DEVS+A AALFS Y R
Sbjct  1    MSYVIAAPEMLATAAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E Q V+KQAAAFH EFTR L AAG AYA AEA+N A +S                     
Sbjct  61   ECQEVLKQAAAFHGEFTRALAAAGAAYAQAEASNTAAMS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G++G+ G      + + +P+TAL+MGGT  P+     +  I+ A+I+ +F        +
Sbjct  100  -GTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLAIIDSAYIRPIFGPNNPVAQY  158

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  159  TPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIRA  215

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+ FLD+ FNGATP +SPY T++
Sbjct  216  LMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLTFLDMSFNGATPPDSPYQTYM  275

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT 
Sbjct  276  YTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNTH  334

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQPIR IP+ G PIA+L QP LRVLVDLGY     G  YAD+PTPA LF
Sbjct  335  YYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGY-----GYGYADVPTPASLF  389

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL F FGQ 
Sbjct  390  APINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMFNFGQS  445

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LS++SG LG++  LIPP
Sbjct  446  SVTELSVLSGALGSVARLIPP  466


>gi|15839539|ref|NP_334576.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13879650|gb|AAK44390.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|323717147|gb|EGB26356.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=468

 Score =  449 bits (1155),  Expect = 5e-124, Method: Compositional matrix adjust.
 Identities = 268/501 (54%), Positives = 339/501 (68%), Gaps = 38/501 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++ AP+MLATAAA VD I S +RAA+A+AAGPT  LLAAA DEVS+A AALFS Y R
Sbjct  1    MSYVIAAPEMLATAAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E Q V+KQAAAFH EFTR L AAG AYA AEA+N A +S                     
Sbjct  61   ECQEVLKQAAAFHGEFTRALAAAGAAYAQAEASNTAAMS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G++G+ G      + + +P+TAL+MGGT  P+     +  I+ A+I+ +F        +
Sbjct  100  -GTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLAIIDSAYIRPIFGPNNPVAQY  158

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  159  TPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIRA  215

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+PFLD+ FNGATP +SPY T++
Sbjct  216  LMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPDSPYQTYM  275

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT 
Sbjct  276  YTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNTH  334

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQPIR IP+ G PIA+L QP L VLVDLGY     G  YAD+PTPA LF
Sbjct  335  YYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLWVLVDLGY-----GYGYADVPTPASLF  389

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL F FGQ 
Sbjct  390  APINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMFNFGQS  445

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LS++SG LG++  LIPP
Sbjct  446  SVTELSVLSGALGSVARLIPP  466


>gi|240168166|ref|ZP_04746825.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=487

 Score =  442 bits (1136),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 282/501 (57%), Positives = 347/501 (70%), Gaps = 19/501 (3%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M  ++  P+MLA AAA VD I S + AA  AAAGPT ++LAAAGDEVSAA AALF AY  
Sbjct  1    MPSVIAVPEMLAAAAAGVDGIGSAVSAAGTAAAGPTAHVLAAAGDEVSAAAAALFRAYAH  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            + QAV+ QA AFHSEFT+ L AAG AYA AEAAN A ++ ALDT+ AP++ LLG   L  
Sbjct  61   DCQAVLNQAEAFHSEFTQALAAAGAAYAQAEAANTAAMAGALDTLGAPVQALLG---LGN  117

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G  GA   P    + + +P+TALIMGGT  P      +  ++ A+IQ +F        +
Sbjct  118  TGPGGAVTTPTSTVMLSGNPVTALIMGGTGYPTFPAPVLAALDSAYIQPIFGPNNPVAQY  177

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ+WP    +G+L+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I +
Sbjct  178  TPEQWWPF---IGHLSLDQSIAQGVTLLNNGINTELQNGHDVVVFGYSQSAAVATNEIRA  234

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+     P+P  ++F+MIG+ NNP GG+L R+ G YIPF+DV F+GATP NSPY T+I
Sbjct  235  LMALPPGQQPDPSRLAFMMIGNINNPNGGILERYTGLYIPFMDVSFDGATPPNSPYQTYI  294

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG AH PQ+PL ILSDINAFMG   VHN YP + A  V NAVPLPTSPGYTGNT 
Sbjct  295  YTGQYDGYAHNPQYPLNILSDINAFMGIRLVHNAYP-VTAADVANAVPLPTSPGYTGNTH  353

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMFLTQDLPLLQP+RDIP+ GPP+A+L QP LRVLVDLGY     G  YAD+PTPA LF
Sbjct  354  YYMFLTQDLPLLQPLRDIPFIGPPLANLIQPDLRVLVDLGY-----GYGYADVPTPASLF  408

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            +  NPF V  +L  G++Q P  A+V+IGV    +     PD+YP+VPS NPGL F FGQ 
Sbjct  409  APVNPFTVISHLATGAVQGPQAALVDIGV----LPQSSLPDTYPYVPSANPGLVFNFGQS  464

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT LSL+SG LG+I  LIPP
Sbjct  465  SVTELSLLSGALGSIARLIPP  485


>gi|183980413|ref|YP_001848704.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183173739|gb|ACC38849.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=493

 Score =  403 bits (1035),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 241/500 (49%), Positives = 317/500 (64%), Gaps = 15/500 (3%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS++ T P+ L+TAAA +  I S L  A++AAAGPT NLLAAA DEVSA  + +F  YG 
Sbjct  1    MSYVRTIPEFLSTAAADIGGIGSALTDASSAAAGPTTNLLAAAADEVSAVVSKVFGGYGL  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
              QAV+ QA+AFH EFT  L  AG  YA AE  NA  +++A+   + P   L   +  + 
Sbjct  61   SAQAVLTQASAFHDEFTELLANAGGIYAQAEVDNAEALTNAVGEFSEPFIQLWDPS-YTY  119

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             GS+ A G        + +P  ALIMGGT +P P P YVT IN AFIQ  FPGA S GL 
Sbjct  120  VGSNIATGPNPQPNEPSLTPEFALIMGGTFDPQPFPLYVTTINNAFIQPFFPGATSVGLS  179

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
             P QFWP+T     LT NQSV EGV  LN A++ Q+     V+ FG+SQSA +    +  
Sbjct  180  YPAQFWPLT---SGLTLNQSVAEGVIDLNNALSVQINGGQHVINFGFSQSAVVATQEMQR  236

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+     P+P D+SFV+ G+   P GG+  RFPG +IPF+D+ F   TP ++PYPT I
Sbjct  237  LMALPVGMRPDPSDLSFVLAGNPATPNGGIFTRFPGMHIPFVDLTFTSPTPPDTPYPTTI  296

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            Y  QYD  +  P++PL ILSD+N  M     H  YP L    V NAV LPTSP YTGNT 
Sbjct  297  YATQYDPTSDFPRYPLNILSDLNTLMS-LGQHELYPNL---DVSNAVQLPTSPDYTGNTT  352

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMF+T++LPLL+P+R IP+ G PIAD  QP LRVLVDLGY+D+G G +YA++PTPA LF
Sbjct  353  YYMFMTKNLPLLEPVRAIPFIGNPIADFIQPDLRVLVDLGYSDWGSGQDYANVPTPATLF  412

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
             IPNPF +   L+ G++         + V+ GL+     P++YP++PS++  LNF+ GQP
Sbjct  413  PIPNPFVIGTDLVIGAVHGS----TALAVDLGLLPASALPNAYPYLPSLDTDLNFFLGQP  468

Query  478  QVTLLSLMSGGLGNILHLIP  497
             VT +SL++  +G +L  +P
Sbjct  469  GVTDISLVTNAIGPVLQRLP  488


>gi|240168171|ref|ZP_04746830.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=489

 Score =  401 bits (1030),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 251/501 (51%), Positives = 330/501 (66%), Gaps = 17/501 (3%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M+HL+ AP+M+ +AA +  +I S + AA AAAAG T N+LAAA DEVSAA A LF  YG+
Sbjct  1    MTHLIAAPEMMVSAATNAVKIGSAISAAGAAAAGSTTNVLAAAADEVSAAIAKLFGTYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E QA + QAAAFH EF + L  A   YA AEAAN   VS+A + + API  LL   P++ 
Sbjct  61   ELQAALTQAAAFHDEFVQALAGAATTYAQAEAANTCAVSNAFNALLAPIENLLAPPPVN-  119

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
                GA      A L   S + ALIMGGT +P P P YVT IN A+IQ LFPGA + GL 
Sbjct  120  ----GATTPTPSAPLPLGSTV-ALIMGGTFDPQPFPVYVTTINGAYIQFLFPGANAAGLT  174

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
             P QFWP+T +LGNLT N+S+ +GV  LN A+ +QL   + V+ FG+SQS+ +  N + +
Sbjct  175  YPAQFWPLTLNLGNLTINESIAQGVVDLNNAITSQLNASHNVIDFGFSQSSVVATNEMYA  234

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LM +     P+P  +SFV+ G+   P GG+  RFPGF+IP LD+ F   TP NSPYPT I
Sbjct  235  LMNLPPGQRPDPSQLSFVLAGNPATPNGGIFTRFPGFHIPVLDLTFTPDTPPNSPYPTKI  294

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            +  QYD  +  PQFPL  L+D+NA M     H+ YP L     ++AV LPTSPGY GNTQ
Sbjct  295  FATQYDPTSDFPQFPLNFLADLNAIMSTGQ-HDLYPNL---DPNDAVALPTSPGYNGNTQ  350

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMF+T++LPLL+P+R IP+ G P+ADL QP LRVLVDLGY D+G G +YA+I TPA LF
Sbjct  351  YYMFMTRNLPLLEPLRAIPFIGRPLADLIQPDLRVLVDLGYTDWGSGQDYANIATPASLF  410

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
             IP+P  V   L +G+++    A+V+I    GL+     P++YP++PS++  LNF+ GQP
Sbjct  411  GIPDPLVVGTDLARGAVEGTQAALVDI----GLLPQSALPNAYPYLPSLDTNLNFFLGQP  466

Query  478  QVTLLSLMSGGLGNILHLIPP  498
              T +SL +  +G +L LIPP
Sbjct  467  TDTTISLFTRAVGPLLDLIPP  487


>gi|240168170|ref|ZP_04746829.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=511

 Score =  366 bits (940),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 241/501 (49%), Positives = 329/501 (66%), Gaps = 16/501 (3%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M+HL+ AP+M+ +AA    +I S++ AA AAAAG T N+LAAA DEVSAA A LF  YG+
Sbjct  1    MTHLIAAPEMMVSAATSAVKIGSSISAAGAAAAGSTTNVLAAAADEVSAAIAKLFGTYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            + QA + QA AFH EF +TL  A   YA AEAANAA V++AL  +NA +++LL     +P
Sbjct  61   QLQAALTQATAFHDEFVQTLAGAATTYAQAEAANAAAVANALGGLNAQVQSLL-----AP  115

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
               +       +A  A  +   AL+MGGT +P P P YV+ IN ++I+  FPGA   G+ 
Sbjct  116  AVGNATTAPTVMAAAAPAASAVALVMGGTFDPEPFPLYVSLINSSYIKPFFPGANPTGVS  175

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
             P Q WP+T   GNLT N+SV +G+  L  A+ +Q+   N VV FG+SQSA +  N I  
Sbjct  176  YPAQLWPLTIFQGNLTLNESVAQGMTDLTNAIYSQIGAGNTVVNFGFSQSAVVSTNVITQ  235

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            LMA+     P+P  +SFV+ G+   P GG   RFPG  IP+LD+ F  ATP +SPYPT I
Sbjct  236  LMALPPGMRPDPSQLSFVLAGNPATPNGGFFTRFPGITIPWLDITFTEATPPDSPYPTTI  295

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            Y  QYD  +  P++PL +L+D+NA M     H  YP L    V++AVPLPTSPGY GNTQ
Sbjct  296  YATQYDPASDFPRYPLNLLADLNALMSTGR-HELYPNL---DVNDAVPLPTSPGYNGNTQ  351

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            YYMF+T+DLPLL P+R IP+ G P+A+L QP LRVLVDLGY+D+G G +YA++ TPA LF
Sbjct  352  YYMFMTKDLPLLDPLRAIPFVGEPLAELIQPDLRVLVDLGYSDWGNGQDYANVVTPASLF  411

Query  418  SIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQP  477
            SIP+PF V   L+ G+++    ++VE+GV    +     P+ YP++P ++  +NFY GQP
Sbjct  412  SIPDPFVVGRELVDGTVKGVQASLVELGV----LPQSALPNEYPYLPDLDTDVNFYVGQP  467

Query  478  QVTLLSLMSGGLGNILHLIPP  498
             VT +S+++  +G +L +IPP
Sbjct  468  TVTDISVLTRAVGPLLDMIPP  488


>gi|289568057|ref|ZP_06448284.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289541810|gb|EFD45459.1| predicted protein [Mycobacterium tuberculosis T17]
Length=315

 Score =  348 bits (893),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 185/322 (58%), Positives = 231/322 (72%), Gaps = 16/322 (4%)

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
            +TPEQ+WP    +GNL+ +QS+ +GV LLN  +N +L   + VV FGYSQSA +  N I 
Sbjct  5    YTPEQWWPF---IGNLSLDQSIAQGVTLLNNGINAELQNGHDVVVFGYSQSAAVATNEIR  61

Query  240  SLMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTH  296
            +LMA+    +P+P  ++F +IG+ NNP GG+L R+ G Y+PFLD+ FNGATP +SPY T+
Sbjct  62   ALMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPDSPYQTY  121

Query  297  IYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNT  356
            +YT QYDG AH PQ+PL ILSD+NAFMG  +VHN YP   A +V NAVPLPTSPGYTGNT
Sbjct  122  MYTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYP-FTAAEVANAVPLPTSPGYTGNT  180

Query  357  QYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGL  416
             YYMFLTQDLPLLQPIR IP+ G PIA+L QP LRVLVDLGY     G  YAD+PTPA L
Sbjct  181  HYYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGY-----GYGYADVPTPASL  235

Query  417  FSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQ  476
            F+  NP AV   L  G++Q P  A+V I    GL+     P++YP++PS NPGL F FGQ
Sbjct  236  FAPINPIAVASALATGTVQGPQAALVSI----GLLPQSALPNTYPYLPSANPGLMFNFGQ  291

Query  477  PQVTLLSLMSGGLGNILHLIPP  498
              VT LS++SG LG++  LIPP
Sbjct  292  SSVTELSVLSGALGSVARLIPP  313


>gi|183980401|ref|YP_001848692.1| PE family protein [Mycobacterium marinum M]
 gi|183173727|gb|ACC38837.1| PE family protein [Mycobacterium marinum M]
Length=550

 Score =  334 bits (857),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 196/442 (45%), Positives = 273/442 (62%), Gaps = 30/442 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+L+  P++LA+ A  +D I S +  A  AAAGPT +LLAAAGDEVS A A LFS YGR
Sbjct  1    MSYLLAEPELLASVATEIDGIGSAISTAGTAAAGPTSSLLAAAGDEVSGAIANLFSVYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRA--PL  118
            E QAV+ Q  AF SEF +TL AAG AYA  EAA+ A +  AL   +A           P 
Sbjct  61   ECQAVLAQVEAFRSEFAQTLAAAGVAYAQTEAASLAALRGALGIPSAAPAVSSASTIPPF  120

Query  119  SPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQG  178
            + N                   +T+L +G T  P+PD  YV   N  F+++     + + 
Sbjct  121  TAN-------------------LTSLFLGPTGVPIPDESYVQAANNLFVRS---SDILRP  158

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLAL-DNKVVAFGYSQSATIINNY  237
            L+TPE+ +P+T  + +LT N SV EG+ +L+ A+  QL++  N V  FGYSQSA I +  
Sbjct  159  LYTPEELYPLT-GVKSLTLNASVEEGLTILDNAIMAQLSIPGNSVTVFGYSQSAIIASLE  217

Query  238  INSLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPT  295
            +  L A+G  +P    ++FV++G+  NP GG+LARFP   +P L + F GATP+++ YPT
Sbjct  218  MQKLAALGPSAPTASQLNFVLVGNEMNPNGGMLARFPDLSLPSLGLTFYGATPSDTIYPT  277

Query  296  HIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGN  355
             IYT +YDG A  P++PL  ++D+NA MG  +VH  Y +L A QVD+A+ LPTSPGY+G 
Sbjct  278  AIYTLEYDGFADFPRYPLNFIADLNAVMGIPFVHVKYLDLTAAQVDSAIELPTSPGYSGV  337

Query  356  TQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTP  413
            T YY+  T++LPLL+P+R IP  G P+A+L QP L+V+V+LGY D  YG   +YAD+ TP
Sbjct  338  TSYYVIPTENLPLLEPLRAIPVIGNPLANLIQPDLKVIVNLGYGDPNYGYSTSYADVRTP  397

Query  414  AGLFSIPNPFAVTYYLIKGSLQ  435
             GLF   +P  +   L  G+ +
Sbjct  398  FGLFPDVSPGTIVDALAAGTQE  419


>gi|183983956|ref|YP_001852247.1| PPE family protein [Mycobacterium marinum M]
 gi|183177282|gb|ACC42392.1| PPE family protein [Mycobacterium marinum M]
Length=594

 Score =  303 bits (776),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 196/433 (46%), Positives = 265/433 (62%), Gaps = 23/433 (5%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M++++T PD+L TAAA + +I S +  ANAAAA PT  ++AAAGDEVS   A LFSAYG+
Sbjct  1    MTYVITQPDILTTAAADIADIRSAIGVANAAAASPTTAMMAAAGDEVSQLIAKLFSAYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E QAV+  AA FH  F  TL AAG+ Y  AEAA  A +S AL T+++PIR LLG    S 
Sbjct  61   ECQAVITDAAVFHDHFAATLAAAGSVYTQAEAAGTATLSQALTTLSSPIRALLGGTAAST  120

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPG--AVSQG  178
            +G+  A    A    AA  PI  L++GG+ NP+P P Y++++   F+   FP   A+ QG
Sbjct  121  SGAMAA----AAPMAAAGDPIYTLVVGGSGNPIPSPAYISNVVSKFVAPYFPVDPALVQG  176

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALL-NTAVNNQ------LALDNKVVAFGYSQSA  231
            LFTP QF+ +   +  L  N SV +GVA+L NT V         L   N V   G SQSA
Sbjct  177  LFTPAQFY-IDTGIKTLPLNVSVPQGVAILTNTLVGTNPPYLGLLTSGNTVNVTGDSQSA  235

Query  232  TIINNYINSLM-----AMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGA  286
             I +  + +L      A GSP  DD++F + G+  NP GGL ARFPG  +P + + F G+
Sbjct  236  MIASLVMRALNPTNSGAAGSPYFDDLTFSLFGNPMNPNGGLFARFPGLSLPSMGLDFYGS  295

Query  287  TPANSPYPTHIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPL  346
            TP NS +PT+++T +YDG A  P++P+  L+D+NAF+G   +H  YP L   Q+D A+PL
Sbjct  296  TPDNS-FPTNVFTLEYDGAADFPRYPINFLADLNAFLGIQSLHGQYPSLTPEQLDTAIPL  354

Query  347  PTSPGYTGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPG  404
              + G T +T YYM  +  LPLL P+R IP  G PIADL +P LR LV+ GY D  YG  
Sbjct  355  TNTVGPT-STNYYMIPSPHLPLLDPVRAIPVIGTPIADLIEPDLRYLVNWGYGDPAYGWS  413

Query  405  GNYADIPTPAGLF  417
             +  ++PTP G+ 
Sbjct  414  TSPPNVPTPFGVL  426


>gi|183980402|ref|YP_001848693.1| PE family protein [Mycobacterium marinum M]
 gi|183173728|gb|ACC38838.1| PE family protein [Mycobacterium marinum M]
Length=582

 Score =  296 bits (759),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 196/447 (44%), Positives = 273/447 (62%), Gaps = 13/447 (2%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M+++   P+ + T AA ++ I ST+ AA+AAAAGPT  L++AA DEVS A A LF  YG+
Sbjct  1    MTYVFVEPETITTMAADLEGIGSTIDAASAAAAGPTSRLVSAAADEVSTAIAGLFGGYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            +YQAVV  AAAFH +FT+T+ AAG AYA  EA++ A +S+AL+       +LLG      
Sbjct  61   QYQAVVAHAAAFHQQFTQTVAAAGLAYAQTEASSVAAISNALEAFGTQAHSLLGGG----  116

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
            N ++ A    +I       P  +L+MGG+ NPLP P+Y+ D    +I   F    SQ LF
Sbjct  117  NAAASATPSASITTTPLTGPTVSLVMGGSGNPLPGPDYLADFFN-YITPQFGVTTSQALF  175

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPEQ +P+T +  +L    SV++GV +L+ A+  Q+A  N VV  GYSQSA I +  + +
Sbjct  176  TPEQLYPLTGE-KSLPLAISVSQGVQILHNAILGQIAEGNSVVVGGYSQSAIIASLEMQN  234

Query  241  LMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            L AM    +P  D + F+++ +  NP GGLL+RF G  +P L V F G+TPA++ YPT I
Sbjct  235  LAAMPPGTAPTADQLGFLLLANPMNPNGGLLSRFAGLTLPSLGVDFYGSTPADTIYPTSI  294

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQV--DNAVPLPTSPGYTGN  355
            YT +YDG A  P++PL I+SD+NA  G  +VH   P +    +   + + L TS  YTGN
Sbjct  295  YTHEYDGFADFPRYPLNIVSDLNAIAGIAFVHTDTPTINPETLPPGDLIKLDTSADYTGN  354

Query  356  TQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTP  413
            T YY+  T+ LPLL+P+R IP  G P+ADL QP L  +V+LGY D  YG     A+I TP
Sbjct  355  TSYYLIHTERLPLLEPLRFIPVVGNPLADLLQPDLTTIVNLGYGDPRYGYSTAPANIETP  414

Query  414  AGLFSIPNPFAVTYYLIKGSLQAPYGA  440
             GLF   +P  V   L+ G+ Q  + A
Sbjct  415  FGLFPEVDPKVVAQQLVIGTQQGFHSA  441


>gi|183983416|ref|YP_001851707.1| PE family protein [Mycobacterium marinum M]
 gi|183176742|gb|ACC41852.1| PE family protein [Mycobacterium marinum M]
Length=549

 Score =  294 bits (753),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 193/440 (44%), Positives = 263/440 (60%), Gaps = 27/440 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M+ LV  P ++AT A  V+EI S +  AN  AAG    + AAAGDEVSAA A+ F+A+G+
Sbjct  1    MAFLVAEPQVMATVAGQVEEIGSAIGVANEFAAGSISGVAAAAGDEVSAAIASFFAAHGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
             YQAV  Q  AFH+EF + L  AGNAY  AEAA AA ++ AL                  
Sbjct  61   AYQAVAGQVEAFHTEFQQALAQAGNAYVQAEAAGAAALAGALGVPATSAAAP--------  112

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
                      A       + +T L+MGGT  P+P P ++   N+ ++++        GL 
Sbjct  113  ----------AATIPPFPANLTTLVMGGTGIPIPGPGFINLANELYVRS---ANALLGLN  159

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLAL-DNKVVAFGYSQSATIINNYIN  239
            TPE+ +P+T    +LT + SV+EG+ +L+ A+  QLA+  N V  FG SQSA I +  + 
Sbjct  160  TPEELYPLT-GTKSLTLDASVSEGLTILDNAIMEQLAIPGNTVTVFGVSQSAVIASLEMQ  218

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L A+G  +P    ++FV++G+  NP GGLLARFP   IP L + F G TP+++ YPT  
Sbjct  219  KLAALGPAAPTASQLNFVLLGNEMNPNGGLLARFPDLSIPSLGLTFYGGTPSDTIYPTAN  278

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL  +SD+NA MG  YVH TY +L   QVDNA+PL TSPGY+G T 
Sbjct  279  YTLEYDGFADFPRYPLNFISDLNAVMGIVYVHPTYLDLTQAQVDNAIPLATSPGYSGVTS  338

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T++LPLL+P+R IP  G P+A+L QP L+VLV+LGY D  YG   + ADI TP G
Sbjct  339  YYILPTENLPLLEPLRAIPVIGNPLANLIQPDLKVLVNLGYGDPAYGYSTSPADITTPFG  398

Query  416  LFSIPNPFAVTYYLIKGSLQ  435
            LF    P  +   L+ G+ Q
Sbjct  399  LFPDVPPHVIADALVAGTKQ  418


>gi|15839533|ref|NP_334570.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|254233542|ref|ZP_04926868.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254366603|ref|ZP_04982647.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|13879644|gb|AAK44384.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|124603335|gb|EAY61610.1| PE family protein [Mycobacterium tuberculosis C]
 gi|134152115|gb|EBA44160.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|323717137|gb|EGB26346.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=588

 Score =  288 bits (738),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 191/449 (43%), Positives = 263/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAATNAFVNAEATNTSALVQEATAGL---------FKPTS  149

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  150  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  198

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  199  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  257

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  258  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  316

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  317  YTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  374

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  375  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  434

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  435  LFPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|183980400|ref|YP_001848691.1| PE family protein [Mycobacterium marinum M]
 gi|183173726|gb|ACC38836.1| PE family protein [Mycobacterium marinum M]
Length=589

 Score =  286 bits (731),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 197/445 (45%), Positives = 264/445 (60%), Gaps = 20/445 (4%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M++++T P +L +AAA V+ I   L  ANAAAAGPT +L+AAA DEVS A A LF  Y  
Sbjct  1    MTYMMTQPQLLTSAAADVEGIRWALTQANAAAAGPTTSLVAAAADEVSTAAAKLFGGYAL  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQ+V+    AFH EF RTL AAG AYA AEA N A +S AL+ +  PI++LLG      
Sbjct  61   EYQSVIGHVTAFHEEFVRTLAAAGTAYAGAEAVNTATISGALNALRTPIQSLLGGGA---  117

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQ--G  178
              S+ A G  A+A  A   P  ALIMGG+  P+P P+Y+ D     +    PG  +Q   
Sbjct  118  -ASTVAAGGAAVAPAALADPFVALIMGGSGTPIPPPDYLQD-----VAPYIPGMPTQLLP  171

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAV---NNQLALDNKVVAFGYSQSATIIN  235
            L TPE  +P+T  + +L  N SV  GV +L+ A+      + L N V   GYSQSA + +
Sbjct  172  LNTPEGLYPLTA-IKDLPLNTSVANGVQILDNALFGPQGLITLGNNVNVLGYSQSAVVSS  230

Query  236  NYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPT  295
              + +L A+GSPN D+++F ++G+   P GGLL+RFPG  +P L + F G TP+N+ Y  
Sbjct  231  LEMRNLQALGSPNTDNLAFTLLGNPMAPNGGLLSRFPGLSLPALGLDFYGGTPSNTGYEL  290

Query  296  HIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVD---NAVPLPTSPGY  352
            + YT  YDG A  PQ+PL +L+D+NAF G  +VH  YP+L    +    N V LP SPG 
Sbjct  291  NQYTLLYDGYADFPQYPLNLLADLNAFAGIQFVHGDYPDLDPNNLPAGYNLVQLPVSPGN  350

Query  353  TGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADI  410
             G   YYM     LP+L+P+R IP  G P+ADL +P L  LV+LGY D  YG    YAD+
Sbjct  351  NGLENYYMITYPGLPILEPLRAIPVIGNPLADLVEPNLTYLVNLGYGDPNYGYSTGYADV  410

Query  411  PTPAGLFSIPNPFAVTYYLIKGSLQ  435
             TP GL    +P      ++ G+ Q
Sbjct  411  TTPFGLLPPIDPVDFAGAMVNGTQQ  435


>gi|253797071|ref|YP_003030072.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289552402|ref|ZP_06441612.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|297632625|ref|ZP_06950405.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 6 more sequence titles
 Length=588

 Score =  281 bits (718),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 190/449 (43%), Positives = 262/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA  A+ +AEA N +A V  A   +           P S
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAAAKAFVNAEATNTSALVQEATAGL---------FKPTS  149

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  150  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  198

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  199  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  257

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  258  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  316

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  317  YTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  374

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  375  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  434

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  435  LFPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|240168157|ref|ZP_04746816.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=560

 Score =  281 bits (718),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 196/452 (44%), Positives = 266/452 (59%), Gaps = 40/452 (8%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M +++  P M+ATAAA ++ I   + +A+AAAAGPT +L AAA DEVSAA A LF AYGR
Sbjct  1    MPYVLADPQMMATAAADLERIGVAVGSASAAAAGPTSSLAAAAADEVSAAIANLFGAYGR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQA+V    AF +EF RTL AAG  YA +EA NAA VS ++             +PL+ 
Sbjct  61   EYQAIVNLLKAFQAEFARTLAAAGLVYAQSEATNAATVSASITA-----------SPLT-  108

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
                               P  +LIMGG+ NP P  +YV D+   +I   F    +Q LF
Sbjct  109  ------------------GPTVSLIMGGSGNPTPGIDYVNDLLN-YISPQFGATNAQALF  149

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQL-ALDNKVVAFGYSQSATIINNYIN  239
            TPEQ +P+T +  +L    SV++GV +L+ A+ +++  L N VV  GYSQSA I +  + 
Sbjct  150  TPEQLYPLTGE-KSLPLTTSVSQGVQILHNAILSEVNTLGNSVVVGGYSQSAIIASLEMR  208

Query  240  SLMAM---GSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTH  296
            +L AM    +P  D + FV++ +  NP GGLL+RF G  +P L V F GATPA++ YPT 
Sbjct  209  NLAAMPPGTAPPADRLGFVLLANPMNPNGGLLSRFAGLSLPSLGVEFFGATPADTIYPTS  268

Query  297  IYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQV--DNAVPLPTSPGYTG  354
            IYT +YDG A  P++PL I+SD+NA  G  +VH   PE+    +   + + LPT P Y G
Sbjct  269  IYTHEYDGFADFPRYPLNIVSDLNAIAGIAFVHTDTPEINPQTLPPGDLIKLPTEPTYNG  328

Query  355  NTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPT  412
            NT YY+  T  LPLL P+R IP  G P+ADL +P L  +V+LGY D  YG     A++PT
Sbjct  329  NTSYYIIRTHHLPLLTPLRFIPVLGNPLADLVEPNLTTIVNLGYGDPRYGYSTAPANVPT  388

Query  413  PAGLFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            P GLF   +P  V   L+ G+ Q    A+ +I
Sbjct  389  PFGLFPEVDPAVVAGELVTGTQQGFNAAVNDI  420


>gi|240173252|ref|ZP_04751910.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=584

 Score =  279 bits (714),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 183/433 (43%), Positives = 253/433 (59%), Gaps = 31/433 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M++++T PD L  AAA V EI S + +ANAA    T  ++AAA DEVS   A+LF AYG+
Sbjct  1    MTYMITQPDTLTAAAASVAEIRSAIGSANAATVASTTGVIAAARDEVSELIASLFRAYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E QAV+ QA AFH  F ++L  A  +YA AEAANAA V+ AL  I++P+R +LG      
Sbjct  61   ECQAVMTQAGAFHDAFAQSLATAATSYAQAEAANAATVTEALAAISSPVRAMLG------  114

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGA--VSQG  178
                  G  P  + + + + +  L+MGG+ NP+P  ++V +I   +I   FP      Q 
Sbjct  115  ------GAAPLTSAVPSAAAVNTLVMGGSGNPIPSIDFVNNIVSRYIAPFFPVDPNFVQS  168

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALL-NTAVNNQ------LALDNKVVAFGYSQSA  231
            LFTPE F+ +   +  L  N SV +GV +L NT V         L   N V   G SQSA
Sbjct  169  LFTPEGFY-IDTGIKTLPLNVSVAQGVTILTNTLVGTNPPYAGLLTSGNTVNVSGESQSA  227

Query  232  TIINNYINSLM-----AMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGA  286
             I +  + SL      A GSP  ++++F ++G+  NP GGL  RF G  +P L +   GA
Sbjct  228  MIASLVMRSLNPTNSGAAGSPYFNNLNFSLVGNPMNPNGGLFERFVGLSLPSLGIEMYGA  287

Query  287  TPANSPYPTHIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPL  346
            TP N+ +PT I+T +YDG A  P++P+ +L+D+NAFMG   +H  Y  L   Q+  A+PL
Sbjct  288  TPDNA-FPTKIFTIEYDGAADFPRYPINVLADLNAFMGIQSLHGQYATLTPEQLATAIPL  346

Query  347  PTSPGYTGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPG  404
              + G T +T YYM  TQ+LPLL P+R IP+ G PIADL QP LR LV+ GY D  YG  
Sbjct  347  TNTVGPT-STSYYMIPTQNLPLLDPVRAIPFVGKPIADLVQPNLRYLVNWGYGDPAYGWS  405

Query  405  GNYADIPTPAGLF  417
             +  ++PTP G+ 
Sbjct  406  TSPPNVPTPFGVL  418


>gi|340625188|ref|YP_004743640.1| pe family protein [Mycobacterium canettii CIPT 140010059]
 gi|340003378|emb|CCC42498.1| pe family protein [Mycobacterium canettii CIPT 140010059]
Length=550

 Score =  277 bits (709),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 198/440 (45%), Positives = 269/440 (62%), Gaps = 26/440 (5%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+L+  P ++A AAA V  I S +  A+AAAAGPT  L AAAGDEVSAA A LF AYG+
Sbjct  1    MSYLIAEPRIVAAAAAEVAGIGSAVSTASAAAAGPTSALAAAAGDEVSAAIAKLFGAYGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQAV+ Q  AFHS F +TL AA + YA AEAA A+ + + L                  
Sbjct  61   EYQAVLAQVEAFHSRFHQTLAAAAHTYADAEAAIASTLQNQLAVP---------------  105

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
              ++      A       + +T L  G T  PLP P YV   N  ++++   GA+ Q +F
Sbjct  106  --AAAPTPAAAAMVPPFPANLTTLFFGPTGIPLPPPSYVDAANMLYVRS--AGAL-QAVF  160

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLAL-DNKVVAFGYSQSATIINNYIN  239
            TPE+ +P+T  + +L  N SV EG+ +++ A+  +LA+  N V  FG+SQSA I +  ++
Sbjct  161  TPEELYPLT-GVRSLVLNTSVEEGLTIMHDAIMGELAIPGNTVTVFGWSQSAIIASLEMH  219

Query  240  SLMAMGSPNP--DDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L AMG   P   D++FV++G+  NP GG+LARFP   +P L + F GATP+++ YPT I
Sbjct  220  RLAAMGPAAPPASDLNFVLVGNEMNPNGGMLARFPDLTLPSLGLTFYGATPSDTIYPTAI  279

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL I+SD+NA  G  +VH  Y +L   QVD A  LPTSPGYTG T 
Sbjct  280  YTLEYDGFADFPRYPLNIISDLNAVAGITFVHTKYLDLTPAQVDGATKLPTSPGYTGVTD  339

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T++LPLLQP+R +P  G P+ADL QP L+V+V+LGY D  YG   +YAD+ TP G
Sbjct  340  YYIIRTENLPLLQPLRAVPVIGDPLADLIQPNLKVIVNLGYGDPNYGYSTSYADVRTPFG  399

Query  416  LFSIPNPFAVTYYLIKGSLQ  435
            L+    P  +   L  G+ Q
Sbjct  400  LWPDVPPQVIADALAAGTQQ  419


>gi|308231479|ref|ZP_07412575.2| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308379707|ref|ZP_07487233.2| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308380909|ref|ZP_07491451.2| PE family protein [Mycobacterium tuberculosis SUMu011]
 7 more sequence titles
 Length=560

 Score =  272 bits (696),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 191/449 (43%), Positives = 263/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  11   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  70

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  71   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGL---------FKPTS  121

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  122  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  170

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  171  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  229

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  230  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  288

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  289  YTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  346

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  347  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  406

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  407  LFPDVPASVVADALVAGTQQGVNDFMVEL  435


>gi|31791329|ref|NP_853822.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121636063|ref|YP_976286.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988536|ref|YP_002643223.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31616914|emb|CAD93020.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491710|emb|CAL70171.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224771649|dbj|BAH24455.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341600079|emb|CCC62748.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=588

 Score =  272 bits (696),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 191/449 (43%), Positives = 263/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGL---------FKPTS  149

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  150  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  198

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  199  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  257

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  258  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  316

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  317  YTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  374

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  375  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  434

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  435  LFPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|289572730|ref|ZP_06452957.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|339630233|ref|YP_004721875.1| PE family protein [Mycobacterium africanum GM041182]
 gi|289537161|gb|EFD41739.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|339329589|emb|CCC25225.1| PE family protein [Mycobacterium africanum GM041182]
Length=588

 Score =  272 bits (696),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 191/449 (43%), Positives = 263/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGL---------FKPTS  149

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  150  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  198

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  199  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  257

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  258  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  316

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  317  YTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  374

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  375  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  434

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  435  LFPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|57116694|ref|YP_177695.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148659915|ref|YP_001281438.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148821343|ref|YP_001286097.1| PE family protein [Mycobacterium tuberculosis F11]
 25 more sequence titles
 Length=588

 Score =  272 bits (696),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 191/449 (43%), Positives = 263/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGL---------FKPTS  149

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  150  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  198

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  199  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  257

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  258  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  316

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  317  YTLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  374

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  375  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  434

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  435  LFPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|240171801|ref|ZP_04750460.1| PE-PGRS family protein, PE16 [Mycobacterium kansasii ATCC 12478]
Length=580

 Score =  270 bits (690),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 190/420 (46%), Positives = 243/420 (58%), Gaps = 39/420 (9%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS LV  PDM+A+AA+ V  I + + AAN AAA  T  LLAA  DEVS   AALF A+ R
Sbjct  1    MSFLVAEPDMMASAASDVARIGAAISAANDAAAATTTQLLAAGADEVSQGIAALFGAFAR  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            +YQAV  Q AA+H    R L A   AY  AEAAN               RTLL   P   
Sbjct  61   DYQAVSAQIAAYHDHVVRALGAGAEAYTGAEAAN---------------RTLLQPLPNRT  105

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
             G+ G GG             T LIMG T NP P   Y+  +   +I+  +PG+   G+ 
Sbjct  106  VGAPGGGG------------PTVLIMGPTGNPGPSFRYLQQVYNLYIRPFYPGSPVLGVT  153

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIIN---NY  237
            TPEQF P T  + +LTF++SV  G A L+ A+  Q A  + VV  G+SQSA++      Y
Sbjct  154  TPEQFQPFT-GIPSLTFDESVAAGAADLHAAIMAQHAAGHDVVVLGFSQSASVATAEMRY  212

Query  238  INSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
            + SL A   P PD +SFV++G  NNP GGLLARFPG ++  + + F+GATP+N  YPT +
Sbjct  213  LASLPADLRPGPDQLSFVLLGDPNNPNGGLLARFPGLFVQPMGLTFSGATPSNL-YPTTV  271

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT QYDG A  PQ+PL I +D+NA +G +Y H TY EL   QV   V  P SP     T 
Sbjct  272  YTRQYDGFADFPQYPLNIPADLNALLGIYYAHGTYQELTPAQVAAGVVQPVSPADV-YTT  330

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLF  417
            Y +  ++ LPLL+P+R I  A  P+ DL +P LRV+++LGY   G    YAD+PTPAGLF
Sbjct  331  YMLLPSEHLPLLEPLRGIVPA--PLLDLVEPDLRVIIELGYDRTG----YADVPTPAGLF  384


>gi|308369315|ref|ZP_07417319.2| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308370327|ref|ZP_07421092.2| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308371602|ref|ZP_07425459.2| PE family protein [Mycobacterium tuberculosis SUMu004]
 9 more sequence titles
 Length=560

 Score =  270 bits (690),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 190/449 (43%), Positives = 262/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  11   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  70

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  71   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGL---------FKPTS  121

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  122  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  170

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  171  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  229

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  230  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  288

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSD NA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  289  YTLEYDGFADFPRYPLNVLSDSNAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  346

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  347  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  406

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  407  LFPDVPASVVADALVAGTQQGVNDFMVEL  435


>gi|306805944|ref|ZP_07442612.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|306970340|ref|ZP_07483001.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308347554|gb|EFP36405.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308352180|gb|EFP41031.1| PE family protein [Mycobacterium tuberculosis SUMu009]
Length=588

 Score =  269 bits (688),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 190/449 (43%), Positives = 262/449 (59%), Gaps = 29/449 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AA A PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAAN-AARVSHALDTINAPIRTLLGRAPLS  119
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N +A V  A   +           P S
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTSALVQEATAGL---------FKPTS  149

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P         P +  +  ++  TA+IMGGT +P+P P YV  I   FI  +    V + L
Sbjct  150  P---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYVNAITTLFIDPVVSNPVVKAL  198

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
             TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  + 
Sbjct  199  VTPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQ  257

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
             L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  
Sbjct  258  HLISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTT  316

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSD NA  G   VH TY +L   Q+ +A  LPT  G T NT 
Sbjct  317  YTLEYDGFADFPRYPLNVLSDSNAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-  374

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YY+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP G
Sbjct  375  YYIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFG  434

Query  416  LFSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            LF       V   L+ G+ Q     +VE+
Sbjct  435  LFPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|183984291|ref|YP_001852582.1| PE family protein [Mycobacterium marinum M]
 gi|183177617|gb|ACC42727.1| PE family protein [Mycobacterium marinum M]
Length=588

 Score =  269 bits (687),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 190/466 (41%), Positives = 260/466 (56%), Gaps = 22/466 (4%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            M  L+ +P  +   A  V EI   +  A+ A AGPT  L AAA DEVS A A LF  Y +
Sbjct  1    MIDLLASPQAMTATATEVAEIGLAINQADLAVAGPTTGLAAAAADEVSEAIATLFDNYAQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
             YQAV +QAAAFH  F +TL AA ++Y  AEAA    ++     +  P+  L   AP+  
Sbjct  61   GYQAVSRQAAAFHDAFAQTLFAASDSYVRAEAAAVKALAG----LTEPVANLF--APVLS  114

Query  121  NGSSGAGGLPAIAQLAAESPI-TALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVS-QG  178
               S A    A+   A   P+  ALI+  +  P P   Y++D+   +++  FP A + QG
Sbjct  115  GPESVAASATALLSGAPLKPVEAALILSESGVPTPSASYISDVYTKYVEPNFPSATAPQG  174

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLA---LDNKVVAFGYSQSATIIN  235
            + TP   +P T  + +LT + S+  G  +LN A+  QLA     + V   GYSQSA + +
Sbjct  175  VSTPNGLYPFT-GIKDLTLDISLARGATILNDAILQQLAALPAGSSVAVLGYSQSAVLSS  233

Query  236  NYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPT  295
              +  L+A G  +   ++FV++G+  NP GG+LARFP   +P L   F GATP N+ +PT
Sbjct  234  LVMPKLLAEGVTS-SQVNFVLLGNPMNPNGGVLARFPDLTLPSLGFTFYGATPDNA-FPT  291

Query  296  HIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGN  355
              YT +YDG A  P++P+ +L+DINA MG  +VH  Y  L   Q+D+AV LPT  G T +
Sbjct  292  VSYTLEYDGFADFPRYPINLLADINAVMGIPFVHADYQHLTQAQLDSAVQLPTE-GPTQS  350

Query  356  TQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTP  413
            T YYM  T+ LPLL P+R IPY G P+A+L +P LRVLV+LGY D  YG     A++PTP
Sbjct  351  T-YYMIPTEHLPLLAPLRFIPYVGDPLAELLEPNLRVLVNLGYGDPAYGYDTGPANVPTP  409

Query  414  AGLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDS  459
             GLF   +P  V  +L  G+ Q     IV  G      GP   P S
Sbjct  410  FGLFPPVSPLTVAEHLAAGTQQ----GIVNSGAALQAQGPPSIPLS  451


>gi|240168158|ref|ZP_04746817.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=546

 Score =  267 bits (682),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 184/443 (42%), Positives = 248/443 (56%), Gaps = 38/443 (8%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS+++T P  +A AA  +  I + +  A A+ AGPT  +  AA DEVSAA A LF A+G+
Sbjct  1    MSYVLTQPPAMAAAATELAGIGTAISEAAASVAGPTTTIATAAADEVSAAIAQLFGAFGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            EYQA+  Q  A +++FT+ L AA NAY   EA +AA +     T                
Sbjct  61   EYQAINAQLGALYNQFTQNLAAAANAYFGDEAISAATLVKGATT----------------  104

Query  121  NGSSGAGGL----PAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVS  176
                   GL           A    TA++M GT +P+P  +YV  I   F   L PG V 
Sbjct  105  -------GLFTPTSPPVVPPAFGQNTAIVMSGTGSPIPSIQYVAAITNLF---LPPGMVV  154

Query  177  QGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINN  236
              L T E+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I + 
Sbjct  155  NPLNTIEELYPIT-GVKSLPFQNSVQTGLQILDAAIWEQIHAGNHVTVFGYSQSAVISSL  213

Query  237  YINSLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYP  294
             I  L+++G   P+P  +SF+ IG+  NP GG+L+R PG  I  L +PF GAT A++PYP
Sbjct  214  EIQQLLSLGPNKPDPSQLSFIFIGNEMNPNGGILSRIPGLNISTLGLPFYGAT-ADNPYP  272

Query  295  THIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTG  354
            T  YT +YDG A  P++PL +LSDINA  G   VH  Y  L   QV NA+ LPT  G T 
Sbjct  273  TTTYTLEYDGFADFPRYPLNVLSDINAVFGIITVHTQYQYLTPQQVANAILLPTE-GVTS  331

Query  355  NTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPT  412
            N QY++  T  LPLL P+R IP  GPP+A L +P LRVLV+LGY D  +G   + A++PT
Sbjct  332  N-QYFIIPTAHLPLLDPVRAIPVIGPPLAALIEPDLRVLVNLGYGDPRFGYSTSPANVPT  390

Query  413  PAGLFSIPNPFAVTYYLIKGSLQ  435
            P GLF    P  +   L+ G+ Q
Sbjct  391  PFGLFPDVPPGVIVDALVAGTHQ  413


>gi|183980403|ref|YP_001848694.1| PE family protein [Mycobacterium marinum M]
 gi|183173729|gb|ACC38839.1| PE family protein [Mycobacterium marinum M]
Length=550

 Score =  266 bits (680),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 192/474 (41%), Positives = 267/474 (57%), Gaps = 35/474 (7%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS++V  P  +A AA  +  I S L  A AAAAGPT  +L+AA DEVS A A L   +G 
Sbjct  1    MSYVVAQPPAIAAAATELTGIGSALSEATAAAAGPTTAILSAAADEVSTAIAQLLGTFGA  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAA-NAARVSHALDTINAPIRTLLGRAPLS  119
            EYQ +  Q AAFH++  + L    N Y +AE   NAA +  A   + +P        P  
Sbjct  61   EYQGISTQLAAFHAQIAQRLATVANYYINAEEINNAALLEEATAGLYSP-----NSPPTV  115

Query  120  PNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGL  179
            P               A  +   A+ MGGT  P+P   Y+  +N  +IQ + PGA+++ L
Sbjct  116  P---------------AVFNDYVAIAMGGTGTPIPSTSYLDAVNTLYIQHIAPGAIAKAL  160

Query  180  FTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYIN  239
            FTPEQ +P+T  + +L F  SV EG+ +L+ ++ N++   N V  FGYSQSA I +  + 
Sbjct  161  FTPEQLYPIT-GVKSLPFQTSVQEGLKILDISIWNEINAGNHVTVFGYSQSAVIASLEMQ  219

Query  240  SLMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHI  297
              +++G  +P+P  I+F++ G+  NP GG+LAR PG  +  L +PF GATP N PY T  
Sbjct  220  HFISLGPNAPDPSQINFILTGNEMNPNGGILARIPGLNVASLGLPFYGATPDN-PYYTTT  278

Query  298  YTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQ  357
            YT +YDG A  P++PL +LSD+NA  G   VH TYP+L   Q+ +A  LPT    TG   
Sbjct  279  YTLEYDGFADFPRYPLNVLSDVNAVFGILTVHRTYPDLTPEQIASATLLPTEGPTTGT--  336

Query  358  YYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAG  415
            YYM  T++LPLL P+R IP  G P+A L QP L+VLV+LGY D  YG   + A++PTP G
Sbjct  337  YYMIRTENLPLLDPVRAIPVIGEPLAALVQPDLKVLVNLGYGDPNYGYSTSPANVPTPFG  396

Query  416  LFSIPNPFAVTYYLIKGSLQA--PYGAIVEIGVEAG-LIGPEWFPDSYPWVPSI  466
            LF   +   V   L+ G+ Q    +GA +   +     I P  FP   P+V S+
Sbjct  397  LFPDVSLQVVADALVAGTHQGINDFGAALPTALSTTPQIAPLEFP---PYVQSV  447


>gi|340625187|ref|YP_004743639.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340003377|emb|CCC42497.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=588

 Score =  266 bits (679),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 190/448 (43%), Positives = 263/448 (59%), Gaps = 27/448 (6%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            +S++   P +LA AA  +  I S +  A AAAA PT  L AAA DEVS A A LF AYG+
Sbjct  39   LSYVFAQPSVLAAAATDLAGIGSAINQATAAAAAPTTGLAAAAADEVSTALATLFGAYGQ  98

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            ++QA+  Q AAFH+EFT+ L AA NA+ +AEA N   + H  +      R      P SP
Sbjct  99   QFQAISAQVAAFHNEFTQRLAAAANAFVNAEATNTTALVH--EATAGLFR------PTSP  150

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQGLF  180
                     P +  +  ++  TA+IMGGT +P+P P Y+  I   FI  +    V + L 
Sbjct  151  ---------PVLPPMFNQN--TAIIMGGTGSPIPTPSYLNAITTLFIDPVVSNPVIKALV  199

Query  181  TPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIINNYINS  240
            TPE+ +P+T  + +L F  SV  G+ +L+ A+  Q+   N V  FGYSQSA I +  +  
Sbjct  200  TPEELYPIT-GVKSLPFQTSVQLGLQILDGAIWEQINAGNHVTVFGYSQSAVIASLEMQH  258

Query  241  LMAMG--SPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIY  298
            L+++G  +P+P  ++F++IG+  NP GG+LAR PG  +  L +PF GATP N PYPT  Y
Sbjct  259  LISLGPNAPSPSQLNFILIGNEMNPNGGILARIPGLNVTTLGLPFYGATPDN-PYPTTTY  317

Query  299  TAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQY  358
            T +YDG A  P++PL +LSDINA  G   VH TY +L   Q+ +A  LPT  G T NT Y
Sbjct  318  TLEYDGFADFPRYPLNVLSDINAVFGILTVHTTYADLTPAQIASATQLPTQ-GTTSNT-Y  375

Query  359  YMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGPGGNYADIPTPAGL  416
            Y+  T+ LPLL P+R IP  GPP+A L +P L V+V+LGY D  +G   + A++PTP GL
Sbjct  376  YIIETEHLPLLAPLRAIPVIGPPLAALVEPNLEVIVNLGYGDPRFGYSTSPANVPTPFGL  435

Query  417  FSIPNPFAVTYYLIKGSLQAPYGAIVEI  444
            F       V   L+ G+ Q     +VE+
Sbjct  436  FPDVPASVVADALVAGTQQGVNDFMVEL  463


>gi|340626444|ref|YP_004744896.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004634|emb|CCC43778.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=528

 Score =  260 bits (665),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 187/431 (44%), Positives = 252/431 (59%), Gaps = 45/431 (10%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS +   P+M+A  A+ +  + + L  A AAAA PT  +LAAA DEVSAA A LF A+G+
Sbjct  1    MSFVFAVPEMVAATASDLASLGAALSEATAAAAIPTTQVLAAAADEVSAAIAELFGAHGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E+QA+  QA+AFH  F R L AA   Y  AEAANAA V  A                   
Sbjct  61   EFQALSAQASAFHDRFVRALSAAAGWYVDAEAANAALVDTA------------------A  102

Query  121  NGSS--GAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQG  178
             G+S  G+GG             TALI+G T  P P  +Y+  +   +I   + G    G
Sbjct  103  TGASELGSGGR------------TALILGSTGTPRPPFDYMQQVYDRYIAPHYLGYAFSG  150

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIIN---  235
            L+TP QF P T  + +LT++QSV EG   L+TA+  Q+A  N VV  G+SQ A++     
Sbjct  151  LYTPAQFQPWT-GIPSLTYDQSVAEGAGYLHTAIMQQVAAGNDVVVLGFSQGASVATLEM  209

Query  236  NYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPT  295
             ++ SL A  +P+PD +SFV++G+ NNP GG+LARFPG Y+  L + FNGATP ++ Y T
Sbjct  210  RHLASLPAGVAPSPDQLSFVLLGNPNNPNGGILARFPGLYLQSLGLTFNGATP-DTDYAT  268

Query  296  HIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGN  355
             IYT QYDG A  P++PL IL+D+NA +G +Y H+ Y  L   QV + + LP S   T N
Sbjct  269  TIYTTQYDGFADFPKYPLNILADVNALLGIYYSHSLYYGLTPEQVASGIVLPVSSPDT-N  327

Query  356  TQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAG  415
            T Y +   +DLPLLQP+R I     P+ DL +P LR +++LGY   G    YAD+PTPA 
Sbjct  328  TTYILLPNEDLPLLQPLRGI--VPEPLLDLIEPDLRAIIELGYDRTG----YADVPTPAA  381

Query  416  LFSIP-NPFAV  425
            LF +  +P AV
Sbjct  382  LFPVRIDPIAV  392


>gi|15840887|ref|NP_335924.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792624|ref|NP_855117.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116862|ref|YP_177810.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 71 more sequence titles
 Length=528

 Score =  260 bits (664),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 187/431 (44%), Positives = 252/431 (59%), Gaps = 45/431 (10%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MS +   P+M+A  A+ +  + + L  A AAAA PT  +LAAA DEVSAA A LF A+G+
Sbjct  1    MSFVFAVPEMVAATASDLASLGAALSEATAAAAIPTTQVLAAAADEVSAAIAELFGAHGQ  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            E+QA+  QA+AFH  F R L AA   Y  AEAANAA V  A                   
Sbjct  61   EFQALSAQASAFHDRFVRALSAAAGWYVDAEAANAALVDTA------------------A  102

Query  121  NGSS--GAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDINKAFIQTLFPGAVSQG  178
             G+S  G+GG             TALI+G T  P P  +Y+  +   +I   + G    G
Sbjct  103  TGASELGSGGR------------TALILGSTGTPRPPFDYMQQVYDRYIAPHYLGYAFSG  150

Query  179  LFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALDNKVVAFGYSQSATIIN---  235
            L+TP QF P T  + +LT++QSV EG   L+TA+  Q+A  N VV  G+SQ A++     
Sbjct  151  LYTPAQFQPWT-GIPSLTYDQSVAEGAGYLHTAIMQQVAAGNDVVVLGFSQGASVATLEM  209

Query  236  NYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPT  295
             ++ SL A  +P+PD +SFV++G+ NNP GG+LARFPG Y+  L + FNGATP ++ Y T
Sbjct  210  RHLASLPAGVAPSPDQLSFVLLGNPNNPNGGILARFPGLYLQSLGLTFNGATP-DTDYAT  268

Query  296  HIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGN  355
             IYT QYDG A  P++PL IL+D+NA +G +Y H+ Y  L   QV + + LP S   T N
Sbjct  269  TIYTTQYDGFADFPKYPLNILADVNALLGIYYSHSLYYGLTPEQVASGIVLPVSSPDT-N  327

Query  356  TQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAG  415
            T Y +   +DLPLLQP+R I     P+ DL +P LR +++LGY   G    YAD+PTPA 
Sbjct  328  TTYILLPNEDLPLLQPLRGI--VPEPLLDLIEPDLRAIIELGYDRTG----YADVPTPAA  381

Query  416  LFSIP-NPFAV  425
            LF +  +P AV
Sbjct  382  LFPVHIDPIAV  392


>gi|183983451|ref|YP_001851742.1| PE family protein [Mycobacterium marinum M]
 gi|183176777|gb|ACC41887.1| PE family protein [Mycobacterium marinum M]
Length=575

 Score =  258 bits (658),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 177/465 (39%), Positives = 251/465 (54%), Gaps = 42/465 (9%)

Query  1    MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGR  60
            MSHLVT P ++  AA  +  I +++  A+ A  G T  L AAA DEVSAA A +FS +G 
Sbjct  1    MSHLVTQPQLMTAAAEDLVGIQTSIAEASIAVGGRTTGLAAAAADEVSAAIADVFSVFGE  60

Query  61   EYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSP  120
            +YQA  +Q  A+H+ F +TL A+ NAY HAEA   A +S                     
Sbjct  61   DYQAFARQVEAYHNAFVQTLTASANAYGHAEADAQALLS---------------------  99

Query  121  NGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPDPEYVTDI----NKAFIQTLFPGAVS  176
             GS+ A G    AQ   +      ++GG+ NP+P   YV  +    N+AF   + P   +
Sbjct  100  -GSTAASGGAPSAQATLQGTTFGWMIGGSGNPIPSQTYVNKVLPYVNEAF--GVLP-ENA  155

Query  177  QGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQLALD--NKVVAFGYSQSATI-  233
            + LFTPE   P+   + +L  N SV +GV +L+  + + LA    + V   GYSQSA I 
Sbjct  156  KALFTPEGLQPIYTGIKSLPLNTSVDQGVQILDQTIKSTLAAHPGDSVAVLGYSQSAIIS  215

Query  234  ---INNYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPAN  290
               + + +N  +    P P ++ F ++G+  NP GGLL+RF G  +P L + F G+TP +
Sbjct  216  SLEMRDLMNPALNPTPPLPTELGFTLLGNPMNPNGGLLSRFVGLNVPSLGLDFYGSTPPD  275

Query  291  SPYPTHIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSP  350
            +PYPT+IYT QYDG A  P++PL +LSD+NAF+G   +H  YP+L    +     + T P
Sbjct  276  TPYPTNIYTLQYDGFASFPRYPLNLLSDLNAFLGIQTIHGQYPDLDPANLPPGYEMVTLP  335

Query  351  GYT-----GNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYAD--YGP  403
            G       G T YYM    +LP+  P+R IP  G P+ADL +P +R+LV+LGY D  YG 
Sbjct  336  GSASLTGQGQTNYYMITHPNLPITAPLRAIPVIGDPLADLIEPNMRILVNLGYGDPNYGY  395

Query  404  GGNYADIPTPAGLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEA  448
              + A++PTP GLF   N   V   L  G+ Q     I +I   A
Sbjct  396  STSPANVPTPFGLFPDVNYLEVAGMLADGTQQGGNAFIADISAMA  440



Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1083597119368




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40