BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0176
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607317|ref|NP_214690.1| mce associated transmembrane protei... 635 2e-180
gi|31791354|ref|NP_853847.1| mce associated transmembrane protei... 633 1e-179
gi|15839554|ref|NP_334591.1| hypothetical protein MT0185 [Mycoba... 632 2e-179
gi|121636088|ref|YP_976311.1| putative mce associated transmembr... 630 7e-179
gi|339630257|ref|YP_004721899.1| hypothetical protein MAF_01770 ... 630 9e-179
gi|289445707|ref|ZP_06435451.1| MCE-associated transmembrane pro... 629 2e-178
gi|289764292|ref|ZP_06523670.1| conserved hypothetical protein [... 627 6e-178
gi|340625213|ref|YP_004743665.1| putative MCE associated transme... 575 4e-162
gi|308231485|ref|ZP_07412603.2| MCE-associated transmembrane pro... 486 3e-135
gi|240172712|ref|ZP_04751371.1| Mce associated transmembrane pro... 378 6e-103
gi|183980450|ref|YP_001848741.1| Mce associated transmembrane pr... 358 6e-97
gi|118616802|ref|YP_905134.1| Mce associated transmembrane prote... 349 3e-94
gi|342859370|ref|ZP_08716024.1| hypothetical protein MCOL_10838 ... 343 2e-92
gi|296167389|ref|ZP_06849791.1| RDD domain protein [Mycobacteriu... 327 2e-87
gi|15828400|ref|NP_302663.1| hypothetical protein ML2596 [Mycoba... 319 3e-85
gi|41409709|ref|NP_962545.1| hypothetical protein MAP3611 [Mycob... 308 1e-81
gi|254777447|ref|ZP_05218963.1| RDD family protein [Mycobacteriu... 306 4e-81
gi|118463532|ref|YP_884128.1| RDD family protein [Mycobacterium ... 292 5e-77
gi|333988769|ref|YP_004521383.1| Mce associated transmembrane pr... 288 8e-76
gi|120401169|ref|YP_950998.1| RDD domain-containing protein [Myc... 263 2e-68
gi|145221299|ref|YP_001131977.1| RDD domain-containing protein [... 263 2e-68
gi|118468353|ref|YP_884557.1| mce associated transmembrane prote... 258 1e-66
gi|315441813|ref|YP_004074692.1| hypothetical protein Mspyr1_012... 253 3e-65
gi|108797105|ref|YP_637302.1| RDD domain-containing protein [Myc... 247 2e-63
gi|254821393|ref|ZP_05226394.1| hypothetical protein MintA_15759... 157 3e-36
gi|119718777|ref|YP_925742.1| RDD domain-containing protein [Noc... 83.6 4e-14
gi|297201861|ref|ZP_06919258.1| conserved hypothetical protein [... 79.3 8e-13
gi|284028931|ref|YP_003378862.1| RDD domain containing protein [... 78.6 1e-12
gi|300788454|ref|YP_003768745.1| RDD domain-containing protein [... 78.6 1e-12
gi|182436508|ref|YP_001824227.1| hypothetical protein SGR_2715 [... 76.3 6e-12
gi|239990166|ref|ZP_04710830.1| hypothetical protein SrosN1_2286... 76.3 6e-12
gi|291447177|ref|ZP_06586567.1| RDD domain containing protein [S... 76.3 7e-12
gi|312195036|ref|YP_004015097.1| hypothetical protein FraEuI1c_1... 75.9 7e-12
gi|342861669|ref|ZP_08718315.1| Pra [Mycobacterium colombiense C... 75.9 8e-12
gi|326329429|ref|ZP_08195753.1| proline-rich antigen [Nocardioid... 73.2 6e-11
gi|311744455|ref|ZP_07718256.1| proline-rich antigen [Aeromicrob... 72.4 8e-11
gi|302528831|ref|ZP_07281173.1| predicted protein [Streptomyces ... 72.4 9e-11
gi|317507687|ref|ZP_07965394.1| RDD family protein [Segniliparus... 71.6 2e-10
gi|336179278|ref|YP_004584653.1| serine/threonine protein kinase... 71.6 2e-10
gi|254820656|ref|ZP_05225657.1| Pra [Mycobacterium intracellular... 71.2 2e-10
gi|118463979|ref|YP_880448.1| Pra protein [Mycobacterium avium 1... 68.9 9e-10
gi|333989664|ref|YP_004522278.1| proline rich antigenic protein ... 67.8 2e-09
gi|336461454|gb|EGO40324.1| hypothetical protein MAPs_30340 [Myc... 67.8 2e-09
gi|296169942|ref|ZP_06851551.1| proline-rich antigen [Mycobacter... 67.8 2e-09
gi|41407123|ref|NP_959959.1| Pra [Mycobacterium avium subsp. par... 67.8 3e-09
gi|296392769|ref|YP_003657653.1| RDD domain-containing protein [... 67.4 3e-09
gi|118470060|ref|YP_889513.1| RDD family protein [Mycobacterium ... 67.0 4e-09
gi|240170812|ref|ZP_04749471.1| hypothetical protein MkanA1_1597... 63.5 4e-08
gi|256374850|ref|YP_003098510.1| hypothetical protein Amir_0701 ... 62.8 7e-08
gi|326329430|ref|ZP_08195754.1| proline-rich antigen [Nocardioid... 62.0 1e-07
>gi|15607317|ref|NP_214690.1| mce associated transmembrane protein [Mycobacterium tuberculosis
H37Rv]
gi|148821368|ref|YP_001286122.1| MCE associated membrane protein [Mycobacterium tuberculosis F11]
gi|167970297|ref|ZP_02552574.1| MCE associated membrane protein [Mycobacterium tuberculosis H37Ra]
20 more sequence titles
Length=322
Score = 635 bits (1639), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 321/322 (99%), Positives = 322/322 (100%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQPTGEK
Sbjct 301 RGQWRLDDLAVVMKPRQPTGEK 322
>gi|31791354|ref|NP_853847.1| mce associated transmembrane protein [Mycobacterium bovis AF2122/97]
gi|289441551|ref|ZP_06431295.1| MCE-associated transmembrane protein [Mycobacterium tuberculosis
T46]
gi|289568075|ref|ZP_06448302.1| MCE-associated transmembrane protein [Mycobacterium tuberculosis
T17]
9 more sequence titles
Length=322
Score = 633 bits (1632), Expect = 1e-179, Method: Compositional matrix adjust.
Identities = 319/322 (99%), Positives = 321/322 (99%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYI +TVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYISATVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQPTGEK
Sbjct 301 RGQWRLDDLAVVMKPRQPTGEK 322
>gi|15839554|ref|NP_334591.1| hypothetical protein MT0185 [Mycobacterium tuberculosis CDC1551]
gi|148659940|ref|YP_001281463.1| putative Mce associated transmembrane protein [Mycobacterium
tuberculosis H37Ra]
gi|253797098|ref|YP_003030099.1| hypothetical protein TBMG_00177 [Mycobacterium tuberculosis KZN
1435]
16 more sequence titles
Length=320
Score = 632 bits (1631), Expect = 2e-179, Method: Compositional matrix adjust.
Identities = 319/320 (99%), Positives = 320/320 (100%), Gaps = 0/320 (0%)
Query 3 VVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCA 62
+VVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCA
Sbjct 1 MVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCA 60
Query 63 CLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLS 122
CLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLS
Sbjct 61 CLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLS 120
Query 123 LFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVG 182
LFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVG
Sbjct 121 LFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVG 180
Query 183 AAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQ 242
AAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQ
Sbjct 181 AAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQ 240
Query 243 DSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKSRG 302
DSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKSRG
Sbjct 241 DSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKSRG 300
Query 303 QWRLDDLAVVMKPRQPTGEK 322
QWRLDDLAVVMKPRQPTGEK
Sbjct 301 QWRLDDLAVVMKPRQPTGEK 320
>gi|121636088|ref|YP_976311.1| putative mce associated transmembrane protein [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224988561|ref|YP_002643248.1| putative MCE associated transmembrane protein [Mycobacterium
bovis BCG str. Tokyo 172]
gi|121491735|emb|CAL70197.1| Probable conserved mce associated transmembrane protein [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224771674|dbj|BAH24480.1| putative MCE associated transmembrane protein [Mycobacterium
bovis BCG str. Tokyo 172]
gi|341600104|emb|CCC62773.1| probable conserved mce associated transmembrane protein [Mycobacterium
bovis BCG str. Moreau RDJ]
Length=322
Score = 630 bits (1626), Expect = 7e-179, Method: Compositional matrix adjust.
Identities = 318/322 (99%), Positives = 321/322 (99%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPP+QRYI +TVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPSQRYISATVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQPTGEK
Sbjct 301 RGQWRLDDLAVVMKPRQPTGEK 322
>gi|339630257|ref|YP_004721899.1| hypothetical protein MAF_01770 [Mycobacterium africanum GM041182]
gi|339329613|emb|CCC25249.1| putative conserved MCE associated transmembrane protein [Mycobacterium
africanum GM041182]
Length=322
Score = 630 bits (1625), Expect = 9e-179, Method: Compositional matrix adjust.
Identities = 318/322 (99%), Positives = 320/322 (99%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYI +TVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYISATVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQ TGEK
Sbjct 301 RGQWRLDDLAVVMKPRQSTGEK 322
>gi|289445707|ref|ZP_06435451.1| MCE-associated transmembrane protein [Mycobacterium tuberculosis
CPHL_A]
gi|289418665|gb|EFD15866.1| MCE-associated transmembrane protein [Mycobacterium tuberculosis
CPHL_A]
Length=322
Score = 629 bits (1623), Expect = 2e-178, Method: Compositional matrix adjust.
Identities = 318/322 (99%), Positives = 320/322 (99%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGT PNQRYI +TVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTLPNQRYISATVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQPTGEK
Sbjct 301 RGQWRLDDLAVVMKPRQPTGEK 322
>gi|289764292|ref|ZP_06523670.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289711798|gb|EFD75814.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=322
Score = 627 bits (1618), Expect = 6e-178, Method: Compositional matrix adjust.
Identities = 318/322 (99%), Positives = 319/322 (99%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
AVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 WALAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQPTGEK
Sbjct 301 RGQWRLDDLAVVMKPRQPTGEK 322
>gi|340625213|ref|YP_004743665.1| putative MCE associated transmembrane protein [Mycobacterium
canettii CIPT 140010059]
gi|340003403|emb|CCC42523.1| putative conserved MCE associated transmembrane protein [Mycobacterium
canettii CIPT 140010059]
Length=322
Score = 575 bits (1482), Expect = 4e-162, Method: Compositional matrix adjust.
Identities = 315/322 (98%), Positives = 319/322 (99%), Gaps = 0/322 (0%)
Query 1 VTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWL 60
+TVVVEKTPTTLPQATPNGAAPW VRAGAFAIDVLPGLAV ATMALTALTVPPGSAWRWL
Sbjct 1 MTVVVEKTPTTLPQATPNGAAPWRVRAGAFAIDVLPGLAVVATMALTALTVPPGSAWRWL 60
Query 61 CACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
CACLLGLTILLLAVNRL+LPT+TGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT
Sbjct 61 CACLLGLTILLLAVNRLVLPTVTGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDT 120
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA
Sbjct 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATA 180
Query 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI
Sbjct 181 VGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSI 240
Query 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKS 300
QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYI +TVRAIFQKS
Sbjct 241 QQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYISATVRAIFQKS 300
Query 301 RGQWRLDDLAVVMKPRQPTGEK 322
RGQWRLDDLAVVMKPRQPTGEK
Sbjct 301 RGQWRLDDLAVVMKPRQPTGEK 322
>gi|308231485|ref|ZP_07412603.2| MCE-associated transmembrane protein [Mycobacterium tuberculosis
SUMu001]
gi|308369325|ref|ZP_07417347.2| MCE-associated transmembrane protein [Mycobacterium tuberculosis
SUMu002]
gi|308370336|ref|ZP_07421120.2| MCE-associated transmembrane protein [Mycobacterium tuberculosis
SUMu003]
13 more sequence titles
Length=244
Score = 486 bits (1250), Expect = 3e-135, Method: Compositional matrix adjust.
Identities = 243/244 (99%), Positives = 244/244 (100%), Gaps = 0/244 (0%)
Query 79 LPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRT 138
+PTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRT
Sbjct 1 MPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRT 60
Query 139 FADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRA 198
FADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRA
Sbjct 61 FADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRA 120
Query 199 QLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVT 258
QLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVT
Sbjct 121 QLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVT 180
Query 259 DSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKSRGQWRLDDLAVVMKPRQP 318
DSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKSRGQWRLDDLAVVMKPRQP
Sbjct 181 DSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQKSRGQWRLDDLAVVMKPRQP 240
Query 319 TGEK 322
TGEK
Sbjct 241 TGEK 244
>gi|240172712|ref|ZP_04751371.1| Mce associated transmembrane protein [Mycobacterium kansasii
ATCC 12478]
Length=328
Score = 378 bits (971), Expect = 6e-103, Method: Compositional matrix adjust.
Identities = 193/327 (60%), Positives = 243/327 (75%), Gaps = 7/327 (2%)
Query 1 VTVVVE--KTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWR 58
+TVVVE +TP T+ APWH+R AFA+DV+PG+AV AT+AL + TVP S+W
Sbjct 1 MTVVVEEIQTPETVQALAEKALAPWHLRVAAFAVDVVPGIAVVATLALVSFTVPSDSSWW 60
Query 59 WLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSA---IGPWRLLVRDLA 115
W+C +L L LL++VNR L P +TGW+LGRAL GI VVR +G+A +GPWRL+VRDLA
Sbjct 61 WVCVAILALVTLLMSVNRWLAPALTGWTLGRALCGIAVVRHNGAAGDAVGPWRLMVRDLA 120
Query 116 HLVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGAC 175
HLVDT+ L VGWLWPLWD RRTFAD+LLRTEVR EPV+RPA +RR TA V + AAG C
Sbjct 121 HLVDTVPLVVGWLWPLWDPDRRTFADMLLRTEVRTAEPVERPAKVRRWTAVVLVTAAGLC 180
Query 176 ASATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYR 235
V AVVY + TD TRA+LAT+GPK+V +L+YDP+T++ DF RA+SL TDRYR
Sbjct 181 LGGAGVSYAVVYSYDKATDRTRAELATQGPKMVAQMLTYDPKTLREDFARAQSLTTDRYR 240
Query 236 PQLSIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRA 295
QL+ QQD+V + PV N+YWVT S++ SATP +ATMLLF+QG RGTPP+ RYI +TVR
Sbjct 241 GQLAAQQDTVAKGHPVLNEYWVTGSSIQSATPNRATMLLFIQGRRGTPPDIRYISATVRV 300
Query 296 IFQKSR-GQWRLDDLAVVMKPRQPTGE 321
F + R QWR+DDL V+ KP+ P G+
Sbjct 301 SFARDRDDQWRVDDLTVLTKPK-PRGD 326
>gi|183980450|ref|YP_001848741.1| Mce associated transmembrane protein [Mycobacterium marinum M]
gi|183173776|gb|ACC38886.1| conserved Mce associated transmembrane protein [Mycobacterium
marinum M]
Length=329
Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 196/332 (60%), Positives = 238/332 (72%), Gaps = 13/332 (3%)
Query 1 VTVVVEKTPTT-----LPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGS 55
+TVVV+K TT LPQ APWH+R GAFA+DVL G AV AT+ L A TVPP S
Sbjct 1 MTVVVDKIETTDVVAELPQKV---LAPWHLRLGAFAVDVLSGAAVVATLGLVAETVPPDS 57
Query 56 AWRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDG----SAIGPWRLLV 111
W W+C LL L +L++A NRLLLP I GWSLGRAL GI VVRRD A+GPW LLV
Sbjct 58 VWWWVCVSLLALVVLVMAANRLLLPPILGWSLGRALCGITVVRRDSHDGDDALGPWLLLV 117
Query 112 RDLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAA 171
RDLAHL+DTL L +GWLWPLWDSRRRTFADLLLRTEVR +P QRPA +R+ T A L A
Sbjct 118 RDLAHLLDTLPLLIGWLWPLWDSRRRTFADLLLRTEVRYRDPEQRPAHVRQWTVAALLTA 177
Query 172 AGACASATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLAT 231
A C +A+ +VY + TD TRA++AT+GPK+V +L+YDP T+Q DF RARSL T
Sbjct 178 AALCVGGSALSYGLVYARDQATDQTRAEIATQGPKIVAQMLTYDPSTLQEDFARARSLTT 237
Query 232 DRYRPQLSIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQS 291
D+YR QL++QQ++V + PV N+YWVTDS++ +ATP ATML+FMQG RG+PP RYI +
Sbjct 238 DKYREQLAVQQETVAKGHPVLNEYWVTDSSIQAATPDHATMLMFMQGRRGSPPEIRYISA 297
Query 292 TVRAIFQKS-RGQWRLDDLAVVMKPRQPTGEK 322
TVR F K QWR+DDL V+ KP+ P K
Sbjct 298 TVRVSFAKDGANQWRVDDLTVLTKPKPPGNGK 329
>gi|118616802|ref|YP_905134.1| Mce associated transmembrane protein [Mycobacterium ulcerans
Agy99]
gi|118568912|gb|ABL03663.1| conserved Mce associated transmembrane protein [Mycobacterium
ulcerans Agy99]
Length=329
Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 193/332 (59%), Positives = 235/332 (71%), Gaps = 13/332 (3%)
Query 1 VTVVVEKTPTT-----LPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGS 55
+TVVV+K TT LPQ APWH+R GAFA+DVL G AV AT+ L A TVPP S
Sbjct 1 MTVVVDKIETTDVVAELPQKV---LAPWHLRLGAFAVDVLSGAAVVATLGLVAETVPPDS 57
Query 56 AWRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDG----SAIGPWRLLV 111
W W+C LL L +L++A NRLLLP I GWSLGRAL GI VVRRD A+GPW LLV
Sbjct 58 VWWWVCVSLLALVVLVMAANRLLLPPILGWSLGRALCGITVVRRDSHDGDDALGPWLLLV 117
Query 112 RDLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAA 171
RDLAHL+DTL L +GWLWPLWDSRRRTFADLLLRTEVR +P QRPA +R+ T A L A
Sbjct 118 RDLAHLLDTLPLLIGWLWPLWDSRRRTFADLLLRTEVRYRDPEQRPAHVRQWTVAALLTA 177
Query 172 AGACASATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLAT 231
A C +A+ +VY + TD TRA++A +GPK+V +L+YD T+Q DF RARSL T
Sbjct 178 AALCVGGSALSYGLVYGRDQATDQTRAEIAAQGPKIVAQMLTYDASTLQEDFARARSLTT 237
Query 232 DRYRPQLSIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQS 291
D+YR QL++QQ++V + PV N+YWVTDS++ +ATP ATML+FMQG RG+PP RYI +
Sbjct 238 DKYREQLAVQQETVAKGHPVLNEYWVTDSSIQAATPDHATMLMFMQGRRGSPPEIRYISA 297
Query 292 TVRAIFQKS-RGQWRLDDLAVVMKPRQPTGEK 322
TVR K QWR+DDL V+ KP+ P K
Sbjct 298 TVRVSSAKDGANQWRVDDLTVLTKPKPPGNGK 329
>gi|342859370|ref|ZP_08716024.1| hypothetical protein MCOL_10838 [Mycobacterium colombiense CECT
3035]
gi|342133611|gb|EGT86814.1| hypothetical protein MCOL_10838 [Mycobacterium colombiense CECT
3035]
Length=323
Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/324 (59%), Positives = 231/324 (72%), Gaps = 3/324 (0%)
Query 1 VTVVVEKTPTTLPQATPNGA-APWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRW 59
+TVVVE+T T Q +P A APWH R GAFA+D LPG+AV TMAL ++TVP G W W
Sbjct 1 MTVVVEQTAPTATQESPREALAPWHSRVGAFAVDTLPGIAVITTMALVSVTVPAGGLWWW 60
Query 60 LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVD 119
C ++G+ L VNRLLL +TGWSLGR L GI VV R G A+GPW LL RDL HL+D
Sbjct 61 TCISVIGVVFTLTWVNRLLLHAVTGWSLGRGLLGIAVVGRSGEAVGPWWLLFRDLLHLLD 120
Query 120 TLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASAT 179
T+S+ VGWLWPLWDSRRRTFAD+L RTEVR +EP PA IRR AA +A C +
Sbjct 121 TVSI-VGWLWPLWDSRRRTFADMLARTEVRPLEPGTAPAHIRRWAAAAVSSAVALCLAGA 179
Query 180 AVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLS 239
A+ VVY + TD TRAQ+AT+GPK+V +L+YDP+++ DF RA SLATD+YRPQL+
Sbjct 180 AISFFVVYTTDRATDQTRAQIATQGPKIVAQMLTYDPKSLHDDFARALSLATDKYRPQLA 239
Query 240 IQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQK 299
QQD V++ PV N+YWVT+S++ SA+P +ATMLLFMQG RG P QRYI +TVR F
Sbjct 240 AQQDLVQKGHPVINEYWVTNSSIESASPHRATMLLFMQGRRGIGPEQRYISATVRVNFTN 299
Query 300 SRGQ-WRLDDLAVVMKPRQPTGEK 322
G WR+DDL V+ KP+QP G K
Sbjct 300 GGGNTWRVDDLNVLTKPKQPGGGK 323
>gi|296167389|ref|ZP_06849791.1| RDD domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897333|gb|EFG76937.1| RDD domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=322
Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 189/319 (60%), Positives = 231/319 (73%), Gaps = 2/319 (0%)
Query 1 VTVVVEKTPTTLPQATP-NGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRW 59
+TVVVEK P T Q +P N APWH+RAGA A+DVLP AV ATMAL TVPP S W W
Sbjct 1 MTVVVEKPPATAVQDSPRNALAPWHLRAGALAVDVLPAAAVVATMALACFTVPPRSVWWW 60
Query 60 LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVD 119
C ++G T+LL+ VNRLLLPTITG+S+GRAL GI VVRRDG IGPW LL+RDLAHL+D
Sbjct 61 PCVAVIGATVLLMLVNRLLLPTITGFSVGRALFGIAVVRRDGEPIGPWGLLLRDLAHLLD 120
Query 120 TLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASAT 179
T+S+ VGWLWPLWDS RRTFAD+LLRTEVRR EP + RR T V LAA C +
Sbjct 121 TVSV-VGWLWPLWDSGRRTFADVLLRTEVRRREPAEPEFGARRWTTVVVLAATVLCVAGA 179
Query 180 AVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLS 239
A+ AVV+ TD TRA+L +GPK+V +L+YDP+++ DF RA SLAT +YR QL+
Sbjct 180 AMSYAVVFGPNRATDRTRAELDIQGPKIVAQMLTYDPKSLHDDFARALSLATTKYRSQLA 239
Query 240 IQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQK 299
QQD V++ PV N+YWVTD A+ SA P +ATML+FMQG RG P++RYI +TVR F K
Sbjct 240 AQQDVVQKGNPVINEYWVTDHAIESAAPDRATMLMFMQGRRGAAPDERYISATVRVTFAK 299
Query 300 SRGQWRLDDLAVVMKPRQP 318
+W +DDL V+ KP+ P
Sbjct 300 DGDRWLVDDLTVLTKPKPP 318
>gi|15828400|ref|NP_302663.1| hypothetical protein ML2596 [Mycobacterium leprae TN]
gi|221230877|ref|YP_002504293.1| hypothetical protein MLBr_02596 [Mycobacterium leprae Br4923]
gi|13093830|emb|CAC32128.1| conserved membrane protein [Mycobacterium leprae]
gi|219933984|emb|CAR72696.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=325
Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 175/319 (55%), Positives = 223/319 (70%), Gaps = 3/319 (0%)
Query 1 VTVVVEKTPT--TLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWR 58
+TVVV K+ T +P+ N APWH+R A A+DVLPGL +TM L TVP SAW
Sbjct 1 MTVVVAKSQTAAVIPEPLSNRLAPWHLRLVALAVDVLPGLVAVSTMTLVVFTVPLRSAWW 60
Query 59 WLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLV 118
WLC + G+ IL + VNRLLLPTI GWSLGRAL GI V+ RDG AIGPWRLL+RDL HL+
Sbjct 61 WLCMAVGGIVILSMLVNRLLLPTIIGWSLGRALCGISVIMRDGVAIGPWRLLLRDLTHLL 120
Query 119 DTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASA 178
DT ++F GWLWPLWDSRRRTFAD+LLRTEVR V+ V+R IR + L AAG
Sbjct 121 DTAAVFAGWLWPLWDSRRRTFADILLRTEVRCVQAVERQRTIRWWASVALLTAAGVSLGG 180
Query 179 TAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQL 238
+V AVVY ++ D TR+++A +GPK+V +L+Y+P++++ DF A+SLA+D+YR QL
Sbjct 181 ASVSWAVVYSHDRAIDQTRSEIAIQGPKMVAQMLTYNPKSLRDDFTHAQSLASDKYRRQL 240
Query 239 SIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQ 298
+ QQD V++ PV N+YW T A+ SAT +ATMLLFMQG RG P +RYI +TVR F
Sbjct 241 AAQQDVVKKGHPVINEYWPTAGAIQSATRDRATMLLFMQGRRGAAPGERYISATVRVSFA 300
Query 299 K-SRGQWRLDDLAVVMKPR 316
K W +DDL V+ KP+
Sbjct 301 KGEHNHWLVDDLTVLTKPK 319
>gi|41409709|ref|NP_962545.1| hypothetical protein MAP3611 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398541|gb|AAS06161.1| hypothetical protein MAP_3611 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460082|gb|EGO38991.1| putative membrane domain-containing protein [Mycobacterium avium
subsp. paratuberculosis S397]
Length=323
Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 189/324 (59%), Positives = 226/324 (70%), Gaps = 3/324 (0%)
Query 1 VTVVVEKTPTT-LPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRW 59
+TV+VE+T TT P+ APWH R GAFAIDV PG AV ATMAL + TVP W W
Sbjct 1 MTVLVEQTATTGTPEPVREALAPWHSRVGAFAIDVAPGAAVIATMALVSFTVPARGVWWW 60
Query 60 LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVD 119
+ C+LG+ LL VNRLLLP ITGWSLGRAL GI V RR +A GPWRLL+RDLAHL+D
Sbjct 61 VGVCMLGVVTLLALVNRLLLPVITGWSLGRALAGIAVTRRTDAAPGPWRLLLRDLAHLLD 120
Query 120 TLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASAT 179
T S+ VGWLWPLWDSRRRTFAD+L TEVRR+ P Q P I R AA L AA C
Sbjct 121 TASI-VGWLWPLWDSRRRTFADMLAGTEVRRLAPEQVPPHISRWAAAAVLGAAAVCLGGA 179
Query 180 AVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLS 239
A+ VVY + D TRAQ+AT+GPK+V +L+YDP+++ DF RA+SLATDRYR QL
Sbjct 180 AMSYGVVYSADRAADQTRAQIATQGPKIVAQMLTYDPKSLHDDFARAQSLATDRYRRQLQ 239
Query 240 IQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQK 299
QQD V++ PV N+YWVT+S++ SA+ +ATMLLFMQG RG P RYI +TVR F K
Sbjct 240 TQQDVVQKGNPVINEYWVTNSSIESASRDRATMLLFMQGRRGAAPEVRYISATVRVSFAK 299
Query 300 -SRGQWRLDDLAVVMKPRQPTGEK 322
WR+DDL V+ KP+ P G K
Sbjct 300 VGENTWRVDDLTVLTKPKPPGGAK 323
>gi|254777447|ref|ZP_05218963.1| RDD family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=323
Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 187/324 (58%), Positives = 226/324 (70%), Gaps = 3/324 (0%)
Query 1 VTVVVEKTPTT-LPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRW 59
+TV+VE+ T P+ APWH R GAFAIDV PG AV ATMAL + TVP W W
Sbjct 1 MTVLVEQAATMGTPEPVREALAPWHSRVGAFAIDVAPGAAVIATMALVSFTVPARGVWWW 60
Query 60 LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVD 119
+ C+LG+ LL VNRLLLP ITGWSLGRAL GI V RR G+A GPWRLL+RDLAHL+D
Sbjct 61 VGVCVLGVVTLLALVNRLLLPVITGWSLGRALAGIAVTRRTGAAPGPWRLLLRDLAHLLD 120
Query 120 TLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASAT 179
T S+ VGWLWPLWDSRRRTFAD+L TEVRR+ P Q P I R AA L AA C
Sbjct 121 TASI-VGWLWPLWDSRRRTFADMLAGTEVRRLAPEQVPPHITRWAAAAVLGAAAVCLGGA 179
Query 180 AVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLS 239
A+ VVY + +D TRAQ+AT+GPK+V +L+YDP+++ DF RA+SLATD+YR QL
Sbjct 180 AMSYGVVYSADRASDQTRAQIATQGPKIVAQMLTYDPKSLHDDFARAQSLATDKYRRQLQ 239
Query 240 IQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQK 299
QQD V++ PV N+YWVT+S++ SA+ +ATMLLFMQG RG P RYI +TVR F K
Sbjct 240 TQQDVVQKGNPVINEYWVTNSSIESASRDRATMLLFMQGRRGAAPEVRYISATVRVSFAK 299
Query 300 -SRGQWRLDDLAVVMKPRQPTGEK 322
WR+DDL V+ KP+ P G K
Sbjct 300 VGENTWRVDDLTVLTKPKPPGGAK 323
>gi|118463532|ref|YP_884128.1| RDD family protein [Mycobacterium avium 104]
gi|118164819|gb|ABK65716.1| RDD family protein [Mycobacterium avium 104]
Length=323
Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 188/324 (59%), Positives = 228/324 (71%), Gaps = 3/324 (0%)
Query 1 VTVVVEKTPTT-LPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRW 59
+TV+VE+T TT P+ APWH R GAFAIDV PG AV ATMAL + TVP W W
Sbjct 1 MTVLVEQTATTGTPEPVREALAPWHSRVGAFAIDVAPGAAVIATMALVSFTVPARGVWWW 60
Query 60 LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVD 119
+ C+LG+ LL+ VNRLLLP ITGWSLGRAL GI V R G+A GPWRLL+RDLAHL+D
Sbjct 61 VGVCVLGVVTLLVLVNRLLLPVITGWSLGRALAGIAVTPRTGAAPGPWRLLLRDLAHLLD 120
Query 120 TLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASAT 179
T S+ VGWLWPLWDSRRRTFAD+L TEVRR+ P Q P I R AA L AA C
Sbjct 121 TASI-VGWLWPLWDSRRRTFADMLAGTEVRRLAPEQVPPHITRWAAAAVLGAAAVCLGGA 179
Query 180 AVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLS 239
A+ VVY + +D TRAQ+AT+GPK+V +L+YDP+++ DF RA+SLATD+YR QL
Sbjct 180 AMSYGVVYSADRASDQTRAQIATQGPKIVAQMLTYDPKSLHDDFARAQSLATDKYRRQLQ 239
Query 240 IQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQRYIQSTVRAIFQK 299
QQD V++ PV N+YWVT+S++ SA+ +ATMLLFMQG RG P RYI +TVR F K
Sbjct 240 TQQDVVQKGNPVINEYWVTNSSIESASRDRATMLLFMQGRRGAAPEVRYISATVRVSFAK 299
Query 300 -SRGQWRLDDLAVVMKPRQPTGEK 322
WR+DDL V+ KP+ P G K
Sbjct 300 VGENTWRVDDLTVLTKPKPPGGAK 323
>gi|333988769|ref|YP_004521383.1| Mce associated transmembrane protein [Mycobacterium sp. JDM601]
gi|333484737|gb|AEF34129.1| Mce associated transmembrane protein [Mycobacterium sp. JDM601]
Length=317
Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 152/288 (53%), Positives = 192/288 (67%), Gaps = 2/288 (0%)
Query 37 GLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRV 96
G V A MAL AL P G AW W+ + GL IL A NR LLP +TGW+LGRA GI V
Sbjct 30 GTIVTAAMALAALGFPAGGAWWWVAVSIAGLAILATAANRTLLPVLTGWTLGRAFAGIEV 89
Query 97 VRRDGSA--IGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPV 154
VR G+ +G RLL+R++AHL+DTL LF GWLWPL D R RTFAD+L RTEVR+
Sbjct 90 VRGGGTTEPVGVARLLLREVAHLLDTLPLFAGWLWPLRDKRGRTFADMLARTEVRQATTR 149
Query 155 QRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSY 214
+ P +R T AV +AAA A A G +V+ E ++ R +L+ +GPK+V D+LSY
Sbjct 150 RAPEGVRARTGAVFVAAAVLSVIAAAAGYLLVFQREHTSEVARGELSRQGPKIVADMLSY 209
Query 215 DPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLL 274
DP+T+Q DF RA+SLAT++YR QL QQD++R PV N Y V D+AVL+ATP + MLL
Sbjct 210 DPQTLQDDFARAQSLATEKYREQLVPQQDAIRNGAPVPNYYRVADAAVLNATPQRGAMLL 269
Query 275 FMQGERGTPPNQRYIQSTVRAIFQKSRGQWRLDDLAVVMKPRQPTGEK 322
F+QG+RGT +R I +TVR F K+ G WR+DDL VV KP GEK
Sbjct 270 FLQGQRGTAGKERLISATVRVTFAKAAGDWRVDDLTVVSKPLPAEGEK 317
>gi|120401169|ref|YP_950998.1| RDD domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119953987|gb|ABM10992.1| RDD domain containing protein [Mycobacterium vanbaalenii PYR-1]
Length=327
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/323 (51%), Positives = 212/323 (66%), Gaps = 9/323 (2%)
Query 1 VTVVVEKTPTTLPQ--ATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWR 58
+T V + TPT TP A W RAGA +D+LPGL V T AL ALT P R
Sbjct 1 MTAVFDTTPTASADDPTTPMPLASWPARAGAITVDILPGLGVIVTTALLALTAPADGWVR 60
Query 59 WLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLV 118
W+ L +T L+A NRL+LP TGW+LGRAL GI V R DG +G R+ R+LAHL+
Sbjct 61 WMFIVALAVTFFLMAANRLVLPVATGWTLGRALFGIAVRRADGRPVGVLRVTGRELAHLL 120
Query 119 DTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASA 178
DTL++FVGWLWPLWD RRRTFADLL TEV RVE QR +RR A V +AAA A +A
Sbjct 121 DTLAVFVGWLWPLWDRRRRTFADLLAGTEVYRVERPQRD--MRRAVATVLVAAAVASVAA 178
Query 179 TAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQL 238
+G A+VY +E D R Q+A +GP++V +LSY +T+ DF RA++L TD YRPQL
Sbjct 179 VGLGYALVYRHERAVDTAREQVAAQGPRIVEQMLSYGADTIVDDFARAQALTTDGYRPQL 238
Query 239 SIQQDSVRESGPVRNQYWVTDSAVLS---ATPAQATMLLFMQGERGTPPNQ-RYIQSTVR 294
QQ +V+++G N+YW +SAVL+ TP + +MLL MQG+RGT PN ++I +TVR
Sbjct 239 ISQQQAVQQAGATTNEYWAVNSAVLTDPPVTPDRVSMLLAMQGQRGTDPNDVKFITATVR 298
Query 295 AIFQKS-RGQWRLDDLAVVMKPR 316
F+KS GQWR+ +L V+ KP+
Sbjct 299 VDFEKSADGQWRVANLTVLKKPQ 321
>gi|145221299|ref|YP_001131977.1| RDD domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145213785|gb|ABP43189.1| RDD domain containing protein [Mycobacterium gilvum PYR-GCK]
Length=327
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/328 (47%), Positives = 210/328 (65%), Gaps = 11/328 (3%)
Query 1 VTVVVEKTPTTLPQATPNGA---APWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAW 57
+TVV++ T T + + P A W RAGA A+D+LP L V AT + ALT P
Sbjct 1 MTVVLDVTET-ISEPEPTAEVRPASWGARAGALALDILPALGVIATCVVLALTAPFDGWV 59
Query 58 RWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHL 117
RWL L + +L VNRL+LP + GW+LGRAL GI V R DG +G RL VR++AHL
Sbjct 60 RWLFTVLAAVVFVLTVVNRLVLPAVKGWTLGRALFGIAVRRDDGGTVGIGRLTVREVAHL 119
Query 118 VDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACAS 177
+DTLSLFVGWLWPLWDSRRRTFAD++ RT V RV +R +RR+ + V +A A +
Sbjct 120 LDTLSLFVGWLWPLWDSRRRTFADMVARTRVVRVASPRRD--MRRVVSGVLIATMVAAVA 177
Query 178 ATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQ 237
A +G A+++ + D R Q+A +GP++V +LSY +T+ DF RA++L TD YRPQ
Sbjct 178 AVGLGYALIFREQRALDSAREQVAEQGPRIVEQMLSYHVDTLVDDFARAQTLTTDGYRPQ 237
Query 238 LSIQQDSVRESGPVRNQYWVTDSAVLSATPAQA---TMLLFMQGERGT-PPNQRYIQSTV 293
L QQ +V+ +GPV N+YW +SAVL+ P A +MLL MQG+RGT + + I +TV
Sbjct 238 LIDQQQAVQGAGPVNNEYWAVNSAVLTDPPVTANRVSMLLAMQGQRGTNAEDMKLITATV 297
Query 294 RAIFQK-SRGQWRLDDLAVVMKPRQPTG 320
+ F+K + GQW++ +L V+ +P G
Sbjct 298 QVDFEKAADGQWKVANLTVLKRPMMNAG 325
>gi|118468353|ref|YP_884557.1| mce associated transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
gi|118169640|gb|ABK70536.1| probable conserved mce associated transmembrane protein [Mycobacterium
smegmatis str. MC2 155]
Length=322
Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/298 (50%), Positives = 195/298 (66%), Gaps = 5/298 (1%)
Query 21 APWHVRAGAFAIDVLPGLAVAATMALTALTVPP-GSAWRWLCACLLGLTILLLAVNRLLL 79
A W RAGAFAID+LPG + T+AL A T P G W W+ L + + NR+LL
Sbjct 22 ASWQARAGAFAIDMLPGAGIIVTLALLAWTAPLLGWVW-WVYTVAAVLVVGAVLANRVLL 80
Query 80 PTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTF 139
PT GW+LGRA+ GIRVV+ DG RLL+RDLAH++DTL++FVGWLWPLWD+R RTF
Sbjct 81 PTTRGWTLGRAVVGIRVVKADGGDAAMVRLLLRDLAHVLDTLAVFVGWLWPLWDARNRTF 140
Query 140 ADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRAQ 199
ADLL RTEV RV P +RRL V LAA CA A A+G V+ + R Q
Sbjct 141 ADLLTRTEVGRVTPA--AGDVRRLAGKVLLAAVAVCAVAVALGYFAVFRPQEAVHEAREQ 198
Query 200 LATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVTD 259
+A GP++V +LSY ++ D ++A++LATD YRP+L QQD +R++GP N+YW
Sbjct 199 IANEGPRIVEQMLSYGVDSFNEDLDKAQTLATDNYRPELVRQQDVIRKAGPTTNEYWAVT 258
Query 260 SAVLSATPAQATMLLFMQGERGTPPNQ-RYIQSTVRAIFQKSRGQWRLDDLAVVMKPR 316
SAVLSAT A+MLL +QG+RGT P +++ +TVR F+K+ W++D+L V+ KP
Sbjct 259 SAVLSATKNDASMLLALQGQRGTNPQDLKFLTATVRVDFRKTGDTWQVDNLTVLKKPN 316
>gi|315441813|ref|YP_004074692.1| hypothetical protein Mspyr1_01240 [Mycobacterium sp. Spyr1]
gi|315260116|gb|ADT96857.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=327
Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/305 (47%), Positives = 196/305 (65%), Gaps = 7/305 (2%)
Query 21 APWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLP 80
A W RAGA A+D+LP L V AT + ALT P RWL L + +L VNRL+LP
Sbjct 23 ASWGARAGALALDILPALGVIATCVVLALTAPFDGWVRWLFTALAAVVFVLTVVNRLVLP 82
Query 81 TITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTFA 140
+ GW+LGRAL GI V R DG +G RL VR++AHL+DTLSLFVGWLWPLWD RRRTFA
Sbjct 83 AVKGWTLGRALFGIAVRRDDGGTVGIGRLTVREVAHLLDTLSLFVGWLWPLWDRRRRTFA 142
Query 141 DLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRAQL 200
D++ T V RV +R +RR+ A V +A A + +G A+++ + D R Q+
Sbjct 143 DMVAGTRVVRVPRPRRD--MRRVVAGVLIATMVASGAVVGLGYALIFREQRALDSAREQV 200
Query 201 ATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVTDS 260
A +GP++V +LSY +T+ DF RA++L TD YRPQL QQ +V+ +GPV N+YW +S
Sbjct 201 AEQGPRIVEQMLSYHVDTLVDDFARAQTLTTDGYRPQLIDQQQAVQGAGPVNNEYWAVNS 260
Query 261 AVLSATPA---QATMLLFMQGERGT-PPNQRYIQSTVRAIFQK-SRGQWRLDDLAVVMKP 315
AVL+ P + +MLL MQG+RGT + + I +TV+ F+K + GQW++ +L V+ +P
Sbjct 261 AVLTDPPVTVNRVSMLLAMQGQRGTNAEDMKLITATVQVDFEKAADGQWKVANLTVLKRP 320
Query 316 RQPTG 320
G
Sbjct 321 MMNAG 325
>gi|108797105|ref|YP_637302.1| RDD domain-containing protein [Mycobacterium sp. MCS]
gi|119866190|ref|YP_936142.1| RDD domain-containing protein [Mycobacterium sp. KMS]
gi|126432728|ref|YP_001068419.1| RDD domain-containing protein [Mycobacterium sp. JLS]
gi|108767524|gb|ABG06246.1| RDD domain containing protein [Mycobacterium sp. MCS]
gi|119692279|gb|ABL89352.1| RDD domain containing protein [Mycobacterium sp. KMS]
gi|126232528|gb|ABN95928.1| RDD domain containing protein [Mycobacterium sp. JLS]
Length=323
Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/320 (49%), Positives = 201/320 (63%), Gaps = 9/320 (2%)
Query 1 VTVVVEKTPTTLPQATPNGAAP---WHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAW 57
+T VV+ P P A A P WHVRA A A+DVLPGLAV AT A L PG W
Sbjct 1 MTAVVDAPPDA-PAAETTPAEPLARWHVRAAALAVDVLPGLAVVATTAPWVLA-GPGIGW 58
Query 58 RW-LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAH 116
W + + + +L + VNR+LLP++ GW+LGRAL GIRV+RRDG RLL+R+LAH
Sbjct 59 SWWVLTAVAAVALLAVIVNRVLLPSLIGWTLGRALCGIRVLRRDGGEAALGRLLLRELAH 118
Query 117 LVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACA 176
++DT++LFVGWLWPLWD R RTFADLLLRTE R V R +RR TA V + A
Sbjct 119 VLDTVALFVGWLWPLWDRRNRTFADLLLRTEARVVARPDRD--MRRFTAKVLIGAVVVAV 176
Query 177 SATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRP 236
+A V VY E D RAQ+A +GP++V +LSY ET+ D RA++L T+ YRP
Sbjct 177 AAVGVTYLAVYRKEQGLDRARAQIAEQGPRIVEQMLSYGAETMDEDLNRAQTLTTEAYRP 236
Query 237 QLSIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTPPNQ-RYIQSTVRA 295
QL QQ++ R+ G N+YW SAVLS++ +A MLL MQG+RGT ++I +TVR
Sbjct 237 QLVAQQEAARKGGATTNEYWAVSSAVLSSSMDEAAMLLAMQGQRGTKAEDLKFITATVRV 296
Query 296 IFQKSRGQWRLDDLAVVMKP 315
F K WR+D+L V+ P
Sbjct 297 DFDKIGDNWRVDNLTVLKAP 316
>gi|254821393|ref|ZP_05226394.1| hypothetical protein MintA_15759 [Mycobacterium intracellulare
ATCC 13950]
Length=180
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/124 (64%), Positives = 98/124 (80%), Gaps = 1/124 (0%)
Query 34 VLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTG 93
+LPG+AV AT+AL +LTVP W W+ C++GL +L + VNRLLLPTI GWSLGRA+ G
Sbjct 1 MLPGVAVLATLALVSLTVPARGVWWWVSICVMGLAVLAMLVNRLLLPTILGWSLGRAVAG 60
Query 94 IRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEP 153
I V RR G A GPW LL+RD+AHL+DT ++ VGWLWPLWDSRRRTFAD++ RTE RR++P
Sbjct 61 IAVTRRGGEAAGPWTLLLRDVAHLLDTATV-VGWLWPLWDSRRRTFADMVARTEARRLQP 119
Query 154 VQRP 157
Q P
Sbjct 120 DQAP 123
>gi|119718777|ref|YP_925742.1| RDD domain-containing protein [Nocardioides sp. JS614]
gi|119539438|gb|ABL84055.1| RDD domain containing protein [Nocardioides sp. JS614]
Length=272
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/90 (47%), Positives = 57/90 (64%), Gaps = 1/90 (1%)
Query 60 LCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVV-RRDGSAIGPWRLLVRDLAHLV 118
L A L L + N L TG+SLG+ + GIR+V DG IG VR L H++
Sbjct 178 LGAVLFLLPLAFFIWNTCLRQGRTGYSLGKGIVGIRLVGESDGQPIGGGMSFVRYLLHML 237
Query 119 DTLSLFVGWLWPLWDSRRRTFADLLLRTEV 148
D+L+ ++GWLWPLWD++R+TFAD +LRT V
Sbjct 238 DSLACYLGWLWPLWDAKRQTFADKILRTVV 267
>gi|297201861|ref|ZP_06919258.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712771|gb|EDY56805.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=224
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/88 (44%), Positives = 57/88 (65%), Gaps = 1/88 (1%)
Query 66 GLTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLF 124
GL +L LA+ +L++ G +LG+ GIR+VR DG +G VR LAH +D+L+ +
Sbjct 137 GLALLGLAIYQLIIEGKNGQTLGKKALGIRLVRESDGQPLGVGMAFVRRLAHFLDSLACY 196
Query 125 VGWLWPLWDSRRRTFADLLLRTEVRRVE 152
+GWLWP WD++R+TFAD + + V R
Sbjct 197 LGWLWPAWDAKRQTFADKVCSSIVIRTN 224
>gi|284028931|ref|YP_003378862.1| RDD domain containing protein [Kribbella flavida DSM 17836]
gi|283808224|gb|ADB30063.1| RDD domain containing protein [Kribbella flavida DSM 17836]
Length=241
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/140 (35%), Positives = 78/140 (56%), Gaps = 6/140 (4%)
Query 15 ATPNGA-APWHVRAGAFAIDVLPGLAVAATMAL-TALTVPPGSAWRWLCACLLGLTILLL 72
P G A W VR GAF ID GL VA + + LT S R + L+ + + L
Sbjct 105 GNPGGELATWPVRVGAFLID---GLIVAVPNWIGSTLTATDNSGLRIVGYLLILVALGLW 161
Query 73 AVNRLLLPTITGWSLGRALTGIRVVRRD-GSAIGPWRLLVRDLAHLVDTLSLFVGWLWPL 131
NR++ TG S G+ G+++V D G +G + +R++ H++D+L ++G+LWPL
Sbjct 162 IYNRIIQQGKTGQSWGKKALGLKLVGADSGQTVGAGKAFLREICHILDSLPCYLGYLWPL 221
Query 132 WDSRRRTFADLLLRTEVRRV 151
WD +++TF+D + T V ++
Sbjct 222 WDEKKQTFSDKINSTYVVKL 241
>gi|300788454|ref|YP_003768745.1| RDD domain-containing protein [Amycolatopsis mediterranei U32]
gi|299797968|gb|ADJ48343.1| RDD domain-containing protein [Amycolatopsis mediterranei U32]
gi|340530058|gb|AEK45263.1| RDD domain-containing protein [Amycolatopsis mediterranei S699]
Length=366
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (39%), Positives = 70/139 (51%), Gaps = 5/139 (3%)
Query 13 PQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLT--IL 70
P P A W RA + ID P L + L + V G A L LG I
Sbjct 71 PFGPPRNYASWGQRALGWLIDFSPILVIYIVAGLFSAIV--GKAGPILAIGGLGWLAWIA 128
Query 71 LLAVNRLLLPTITGWSLGRALTGIRVVRRD-GSAIGPWRLLVRDLAHLVDTLSLFVGWLW 129
NR + TG SLG+ + I++VR D G +GP +RDLAH VD++ +VGWLW
Sbjct 129 WSIYNRWIQQGNTGQSLGKRIAKIKLVREDTGQPVGPGMAFLRDLAHAVDSVICYVGWLW 188
Query 130 PLWDSRRRTFADLLLRTEV 148
PLWD + +T AD ++ T V
Sbjct 189 PLWDDKSQTLADKIVGTVV 207
>gi|182436508|ref|YP_001824227.1| hypothetical protein SGR_2715 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777130|ref|ZP_08236395.1| RDD domain containing protein [Streptomyces cf. griseus XylebKG-1]
gi|178465024|dbj|BAG19544.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326657463|gb|EGE42309.1| RDD domain containing protein [Streptomyces griseus XylebKG-1]
Length=208
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/134 (34%), Positives = 73/134 (55%), Gaps = 5/134 (3%)
Query 21 APWHVRAGAFAIDVLPGLAVAA-TMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLL 79
A W +RAG ID GL V + L + G + + A L + ++ L + +L
Sbjct 78 AHWGLRAGGLIID---GLVVGVPYLILGGIGGAMGDSGGAIIALLGFVALIGLVIWQLYQ 134
Query 80 PTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRT 138
TG ++G+ GIR++R DG +G VR LAH +D+++ ++GWLWPLWD +++T
Sbjct 135 EGTTGQTIGKKAVGIRLLREADGRPLGFGMAFVRRLAHFLDSIACYIGWLWPLWDEKKQT 194
Query 139 FADLLLRTEVRRVE 152
FAD + + V +
Sbjct 195 FADKVCSSVVVKAN 208
>gi|239990166|ref|ZP_04710830.1| hypothetical protein SrosN1_22868 [Streptomyces roseosporus NRRL
11379]
Length=207
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/133 (32%), Positives = 72/133 (55%), Gaps = 4/133 (3%)
Query 21 APWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLP 80
A W +R G +D GL + L + G ++ + + L ++ +A+ +L
Sbjct 78 AHWGLRFGGLIVD---GLVMMVPYILVIIGGAVGDSFGAILGVIGFLGLIAVAIWQLYQE 134
Query 81 TITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTF 139
TG ++G+ GIR++R DG +G VR LAH +D+L+ ++GWLWPLWD +++TF
Sbjct 135 GTTGQTIGKKAVGIRLLREADGRPLGFGMAFVRRLAHFLDSLACYIGWLWPLWDEKKQTF 194
Query 140 ADLLLRTEVRRVE 152
AD + + V +
Sbjct 195 ADKVCSSVVVKAN 207
>gi|291447177|ref|ZP_06586567.1| RDD domain containing protein [Streptomyces roseosporus NRRL
15998]
gi|291350124|gb|EFE77028.1| RDD domain containing protein [Streptomyces roseosporus NRRL
15998]
Length=235
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/133 (32%), Positives = 72/133 (55%), Gaps = 4/133 (3%)
Query 21 APWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLP 80
A W +R G +D GL + L + G ++ + + L ++ +A+ +L
Sbjct 106 AHWGLRFGGLIVD---GLVMMVPYILVIIGGAVGDSFGAILGVIGFLGLIAVAIWQLYQE 162
Query 81 TITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTF 139
TG ++G+ GIR++R DG +G VR LAH +D+L+ ++GWLWPLWD +++TF
Sbjct 163 GTTGQTIGKKAVGIRLLREADGRPLGFGMAFVRRLAHFLDSLACYIGWLWPLWDEKKQTF 222
Query 140 ADLLLRTEVRRVE 152
AD + + V +
Sbjct 223 ADKVCSSVVVKAN 235
>gi|312195036|ref|YP_004015097.1| hypothetical protein FraEuI1c_1155 [Frankia sp. EuI1c]
gi|311226372|gb|ADP79227.1| RDD domain containing protein [Frankia sp. EuI1c]
Length=205
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/141 (40%), Positives = 70/141 (50%), Gaps = 18/141 (12%)
Query 15 ATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLA- 73
A P A W R GA+ IDVLP + V GS R LL IL LA
Sbjct 73 AGPGAYASWAQRVGAYLIDVLPQIVVLVLF---------GSILRGPAVVLL--VILWLAS 121
Query 74 -----VNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLFVGW 127
NR + TG SLGR IR+V G IGP RDL H VD++ ++G+
Sbjct 122 LGWIVYNRWIQAGRTGQSLGRKTLNIRLVSEVTGQPIGPAMAFARDLCHFVDSVICYIGY 181
Query 128 LWPLWDSRRRTFADLLLRTEV 148
L+PLWD +R+T AD +++T V
Sbjct 182 LFPLWDPKRQTLADKIVKTVV 202
>gi|342861669|ref|ZP_08718315.1| Pra [Mycobacterium colombiense CECT 3035]
gi|342130803|gb|EGT84099.1| Pra [Mycobacterium colombiense CECT 3035]
Length=240
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/162 (34%), Positives = 80/162 (50%), Gaps = 27/162 (16%)
Query 22 PWHVRAGAFAIDVLPGLAVAA-----------TMALTALT------------VPPGSAWR 58
PW RA AF ID+LP + V T +T +T G +
Sbjct 81 PWLTRALAFVIDILPYVVVHGIGTAILVATQQTACITDVTQYAVNQYCATQNSTTGMVAQ 140
Query 59 WLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHL 117
WL A ++GL L+ N TG S+G+++ +VV G IG +VR LAH
Sbjct 141 WL-ASIIGLFYLIW--NYGYRQGTTGSSVGKSVLKFKVVSEVTGQPIGFGMSVVRSLAHF 197
Query 118 VDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAV 159
VD + F+G+L+PLWDS+R+T AD ++ T ++ +RPAV
Sbjct 198 VDAVICFIGFLFPLWDSKRQTLADKIMTTVCLPIDGAERPAV 239
>gi|326329429|ref|ZP_08195753.1| proline-rich antigen [Nocardioidaceae bacterium Broad-1]
gi|325952755|gb|EGD44771.1| proline-rich antigen [Nocardioidaceae bacterium Broad-1]
Length=238
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/83 (40%), Positives = 53/83 (64%), Gaps = 1/83 (1%)
Query 67 LTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLFV 125
+++ L N L TG+++G+ + GI+VV+ DG +G W + R H +D L+ ++
Sbjct 150 VSLAFLFWNYGLKQGKTGYTIGKGVLGIKVVKEADGQVLGTWFSIGRFFVHYLDQLACYI 209
Query 126 GWLWPLWDSRRRTFADLLLRTEV 148
G+LWPLWD +R+TFAD +L T V
Sbjct 210 GYLWPLWDEKRQTFADKILSTIV 232
>gi|311744455|ref|ZP_07718256.1| proline-rich antigen [Aeromicrobium marinum DSM 15272]
gi|311312260|gb|EFQ82176.1| proline-rich antigen [Aeromicrobium marinum DSM 15272]
Length=156
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/139 (38%), Positives = 73/139 (53%), Gaps = 9/139 (6%)
Query 21 APWHVRAGAFAIDVLPGLAVAATMALTALTVPPG-SAWRWLCACLLGLTILLLAV----- 74
A W R GA ID++P L V A+ G ++ + A + + LLA
Sbjct 19 ASWGQRVGALIIDIIPQLVVFVVCAVLFGESETGDGSFSFQLAGVGAVLYYLLAFAWFGY 78
Query 75 NRLLLPTITGWSLGRALTGIRVVRRDGS--AIGPWRLLVRDLAHLVDTLSLFVGWLWPLW 132
N L L TG ++G+ GI V R G+ IGP VR LAH++D+L +G+L PL+
Sbjct 79 NWLYLQGTTGQTVGKKALGIGV-HRAGTREPIGPGLTFVRQLAHILDSLPCLIGYLVPLF 137
Query 133 DSRRRTFADLLLRTEVRRV 151
D RRTFAD+++ T V RV
Sbjct 138 DGERRTFADMIMSTRVHRV 156
>gi|302528831|ref|ZP_07281173.1| predicted protein [Streptomyces sp. AA4]
gi|302437726|gb|EFL09542.1| predicted protein [Streptomyces sp. AA4]
Length=328
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/125 (39%), Positives = 68/125 (55%), Gaps = 3/125 (2%)
Query 23 WHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLPTI 82
W RAGA+ ID P LA L ++ S +L A L T+ NR +
Sbjct 37 WGQRAGAYLIDFAPLLAGLLLALLVSMVSGVASTIVYLLAILG--TLAWTVFNRWINGGN 94
Query 83 TGWSLGRALTGIRVVRRD-GSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTFAD 141
TG SLG+ + GI++V G IG VRDLAH +D+++ +G+LWPLWD + +TF+D
Sbjct 95 TGQSLGKRIVGIKLVSEAAGEPIGAGTAFVRDLAHALDSMAFALGYLWPLWDDKAQTFSD 154
Query 142 LLLRT 146
+L T
Sbjct 155 KILGT 159
>gi|317507687|ref|ZP_07965394.1| RDD family protein [Segniliparus rugosus ATCC BAA-974]
gi|316254014|gb|EFV13377.1| RDD family protein [Segniliparus rugosus ATCC BAA-974]
Length=165
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/153 (34%), Positives = 79/153 (52%), Gaps = 14/153 (9%)
Query 9 PTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTA---------LTVPPGSAWRW 59
P ++ G A W R A ID L L + + P G+A
Sbjct 15 PADTRESQRKGYATWGSRVLASVIDSLLLLPFQVLIGVVGEHESSSSPYSGTPDGAA--- 71
Query 60 LCACLLGLTILLLAV-NRLLLPTITGWSLGRALTGIRVVRRD-GSAIGPWRLLVRDLAHL 117
+ + LL L L + V N ++ TG ++G+ IR+V+ G IGP + VR LAH+
Sbjct 72 VASMLLVLGALGVCVWNVIVKQGRTGQTVGKEALKIRLVQESTGRPIGPGVVFVRQLAHI 131
Query 118 VDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRR 150
+D +S +VG+LWPLWD++R+TFAD ++RT V +
Sbjct 132 LDVVSCYVGYLWPLWDAKRQTFADKVMRTVVVK 164
>gi|336179278|ref|YP_004584653.1| serine/threonine protein kinase [Frankia symbiont of Datisca
glomerata]
gi|334860258|gb|AEH10732.1| serine/threonine protein kinase [Frankia symbiont of Datisca
glomerata]
Length=554
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/86 (42%), Positives = 52/86 (61%), Gaps = 1/86 (1%)
Query 66 GLTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDTLSLF 124
GL + L +TG + GR + IR+VR DG +G R VR L H +D L +
Sbjct 467 GLIFFASIIIMCCLEGVTGQTPGRRIARIRLVRELDGRPLGLGRAFVRRLCHFLDALPFY 526
Query 125 VGWLWPLWDSRRRTFADLLLRTEVRR 150
VG+LWPLWD++R+TFAD ++++ V R
Sbjct 527 VGFLWPLWDAKRQTFADKIMKSVVIR 552
>gi|254820656|ref|ZP_05225657.1| Pra [Mycobacterium intracellulare ATCC 13950]
Length=244
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/162 (34%), Positives = 79/162 (49%), Gaps = 27/162 (16%)
Query 22 PWHVRAGAFAIDVLPG-----------LAVAATMALTALTVPP------------GSAWR 58
PW RA AF ID+LP LA T +T +T G +
Sbjct 85 PWLTRALAFVIDILPYVVVHGIGTAILLATQQTACITDVTQYAVNQYCATQNSTLGMVAQ 144
Query 59 WLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHL 117
WL A ++GL L+ N TG S+G+++ +VV G +G +VR LAH
Sbjct 145 WL-ASIVGLFYLIW--NYGYQQGTTGSSVGKSVMKFKVVSEITGQPLGFGLSVVRALAHF 201
Query 118 VDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAV 159
VD + F+G+L+PLWDS+R+T AD ++ T ++ +RP V
Sbjct 202 VDAIICFIGFLFPLWDSKRQTLADKIMTTVCLPIDGTERPPV 243
>gi|118463979|ref|YP_880448.1| Pra protein [Mycobacterium avium 104]
gi|118165266|gb|ABK66163.1| Pra protein [Mycobacterium avium 104]
Length=239
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/158 (35%), Positives = 75/158 (48%), Gaps = 21/158 (13%)
Query 21 APWHVRAGAFAIDVLPGLAV--------AATMALTALTVPPGSAWRWLCA---CLLGLTI 69
APW RA AF ID+LP + V AT +T A CA LGL
Sbjct 80 APWLTRALAFVIDILPYVVVHGIGTAILVATQQTACITDVTQYAVNQYCATQNSTLGLVA 139
Query 70 LLLAVNRLLLPTI---------TGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVD 119
LA L I TG S+G+++ +VV G +G +VR LAH VD
Sbjct 140 QWLASIVGLFYLIWNYGYRQGTTGSSVGKSVMKFKVVSEVTGQPVGFGMSVVRALAHFVD 199
Query 120 TLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRP 157
+ F+G+L+PLWDS+R+T AD ++ T ++ + P
Sbjct 200 AIICFIGFLFPLWDSKRQTLADKIMTTVCLPLDGSESP 237
>gi|333989664|ref|YP_004522278.1| proline rich antigenic protein [Mycobacterium sp. JDM601]
gi|333485632|gb|AEF35024.1| proline rich antigenic protein [Mycobacterium sp. JDM601]
Length=239
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/158 (34%), Positives = 75/158 (48%), Gaps = 32/158 (20%)
Query 12 LPQATPNGAAPWHVRAGAFAIDVLPGLAVAA----------------TMALTALTVPPGS 55
LPQ + PW R GA+ ID +P L + T A A TV P +
Sbjct 85 LPQES---YTPWLTRVGAYFIDSIPILLIYGIPAMVAGSTAQRECVTTSAGFACTVTPST 141
Query 56 A------WRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWR 108
A WL A G+ N TG S+G+++ +VV G IG
Sbjct 142 AGALLMFLGWLGAFGFGIW------NYGYRQGTTGSSIGKSVMKFKVVSEATGQPIGFGM 195
Query 109 LLVRDLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRT 146
+VR LAHL+D + LF+G+L+PLWD++R+T AD ++ T
Sbjct 196 SIVRQLAHLIDGIILFIGYLFPLWDAKRQTLADKIMTT 233
>gi|336461454|gb|EGO40324.1| hypothetical protein MAPs_30340 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=239
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/157 (34%), Positives = 74/157 (48%), Gaps = 21/157 (13%)
Query 22 PWHVRAGAFAIDVLPGLAV--------AATMALTALTVPPGSAWRWLCA---CLLGLTIL 70
PW RA AF ID+LP + V AT +T A CA LGL
Sbjct 81 PWLTRALAFVIDILPYVVVHGIGTAILVATQQTACITDVTQYAVNQYCATQNSTLGLVAQ 140
Query 71 LLAVNRLLLPTI---------TGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDT 120
LA L I TG S+G+++ +VV G +G +VR LAH VD
Sbjct 141 WLASIVGLFYLIWNYGYRQGTTGSSVGKSVMKFKVVSEVTGQPVGFGMSVVRALAHFVDA 200
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRP 157
+ F+G+L+PLWDS+R+T AD ++ T ++ + P
Sbjct 201 IICFIGFLFPLWDSKRQTLADKIMTTVCLPLDGSESP 237
>gi|296169942|ref|ZP_06851551.1| proline-rich antigen [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895406|gb|EFG75111.1| proline-rich antigen [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=166
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/149 (37%), Positives = 75/149 (51%), Gaps = 27/149 (18%)
Query 22 PWHVRAGAFAIDVLP---------GLAVAA--TMALTALTVPP------------GSAWR 58
PW R AF ID+LP G+ VA T +T +T G A +
Sbjct 8 PWLTRLAAFIIDILPYAVVHGIGTGILVATQQTSCITDVTQYSVNQYCVTQNSTLGLAAQ 67
Query 59 WLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHL 117
WL A L+GL L L N TG S+G+++ +VV G IG +VR LAH
Sbjct 68 WL-ASLIGL--LYLIWNYGYRQGTTGSSVGKSVMKFKVVSEVTGQPIGFGMSVVRALAHF 124
Query 118 VDTLSLFVGWLWPLWDSRRRTFADLLLRT 146
VD + F+G+L+PLWD++R+T AD ++ T
Sbjct 125 VDAIICFIGFLFPLWDAKRQTLADKIMTT 153
>gi|41407123|ref|NP_959959.1| Pra [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395474|gb|AAS03342.1| Pra [Mycobacterium avium subsp. paratuberculosis K-10]
Length=241
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/157 (34%), Positives = 74/157 (48%), Gaps = 21/157 (13%)
Query 22 PWHVRAGAFAIDVLPGLAV--------AATMALTALTVPPGSAWRWLCA---CLLGLTIL 70
PW RA AF ID+LP + V AT +T A CA LGL
Sbjct 83 PWLTRALAFVIDILPYVVVHGIGTAILVATQQTACITDVTQYAVNQYCATQNSTLGLVAQ 142
Query 71 LLAVNRLLLPTI---------TGWSLGRALTGIRVVRR-DGSAIGPWRLLVRDLAHLVDT 120
LA L I TG S+G+++ +VV G +G +VR LAH VD
Sbjct 143 WLASIVGLFYLIWNYGYRQGTTGSSVGKSVMKFKVVSEVTGQPVGFGMSVVRALAHFVDA 202
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRP 157
+ F+G+L+PLWDS+R+T AD ++ T ++ + P
Sbjct 203 IICFIGFLFPLWDSKRQTLADKIMTTVCLPLDGSESP 239
>gi|296392769|ref|YP_003657653.1| RDD domain-containing protein [Segniliparus rotundus DSM 44985]
gi|296179916|gb|ADG96822.1| RDD domain containing protein [Segniliparus rotundus DSM 44985]
Length=164
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/137 (38%), Positives = 70/137 (52%), Gaps = 10/137 (7%)
Query 21 APWHVRAGAFAIDVLPGL-------AVAATMALTALTVPPGSAWRWLCACLLGLTILLLA 73
A W RAGA ID L L V A MA + L S + + LL L ++++
Sbjct 26 ATWGQRAGACLIDFLILLPFVVLDEMVKAHMASSGLYAGT-SGGAAVASALLMLGLMVVW 84
Query 74 V-NRLLLPTITGWSLGRALTGIRVV-RRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPL 131
+ N ++ TG ++G+ IR+V G +G R R AHL+D L LF G+LWPL
Sbjct 85 IWNVVVQQGRTGQTVGKETMKIRLVGASSGEPVGKGRCFARQTAHLLDALPLFTGYLWPL 144
Query 132 WDSRRRTFADLLLRTEV 148
WD R+TFAD RT V
Sbjct 145 WDENRQTFADKAARTVV 161
>gi|118470060|ref|YP_889513.1| RDD family protein [Mycobacterium smegmatis str. MC2 155]
gi|118171347|gb|ABK72243.1| RDD family protein [Mycobacterium smegmatis str. MC2 155]
Length=245
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/154 (32%), Positives = 73/154 (48%), Gaps = 18/154 (11%)
Query 9 PTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWR---------- 58
P T+P P PW R AF ID LP V L + G++
Sbjct 47 PPTVP--NPQAYTPWFDRVIAFVIDQLPIAVVTVIGYLVVFGILAGASQGSSDGEITTGV 104
Query 59 WLCACLLGLTILLLAV-----NRLLLPTITGWSLGRALTGIRVV-RRDGSAIGPWRLLVR 112
+ A +L + L + N TG S+G+++ +VV + G IG LVR
Sbjct 105 GIVAAVLIFVLSLAPIAYGVWNMGYRQGTTGQSIGKSVMKFKVVSEQTGQPIGFLMSLVR 164
Query 113 DLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRT 146
+AH+VD L +VG+L+PLWD++R+T AD ++ T
Sbjct 165 QVAHIVDGLICYVGYLFPLWDAKRQTLADKIMTT 198
>gi|240170812|ref|ZP_04749471.1| hypothetical protein MkanA1_15972 [Mycobacterium kansasii ATCC
12478]
Length=296
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/178 (31%), Positives = 90/178 (51%), Gaps = 19/178 (10%)
Query 21 APWHVRAGAFAIDVLPGLAVAATMAL----TALTVPPGSAWRWLCACLLGLTILLLAV-N 75
A W R GA+ ID + G + T+ + TA V GS ++ + A ++ L +L V N
Sbjct 5 ASWIRRVGAYLIDYMLGFVIGVTLGIVGGVTATLVGGGSRFQGIVALIVNLALLAYWVWN 64
Query 76 RLLLPTITGWSLGRALTGIRVV-RRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDS 134
ITG ++G+++ +V+ R G+ IG + R AH +D ++ +G+L PL+ +
Sbjct 65 WGYRQGITGSTVGKSVLRFKVLGERTGAPIGVGSSIARYFAHFLDAITFGIGYLLPLFTA 124
Query 135 RRRTFADLLLRTEVRRVEP-------VQRPAVIRRLTAAVALAAAG-----ACASATA 180
+R+T AD+++ T EP RP +R + AV L A AC +AT+
Sbjct 125 KRQTIADMVMDTVCVLDEPPRALRSHTARPG-LRMVVGAVVLVIAAALTVLACLNATS 181
>gi|256374850|ref|YP_003098510.1| hypothetical protein Amir_0701 [Actinosynnema mirum DSM 43827]
gi|255919153|gb|ACU34664.1| RDD domain containing protein [Actinosynnema mirum DSM 43827]
Length=373
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/91 (35%), Positives = 51/91 (57%), Gaps = 1/91 (1%)
Query 62 ACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRD-GSAIGPWRLLVRDLAHLVDT 120
A +L L + L L TG S G+ + I+++ + G IG VR L H VD
Sbjct 203 AGVLYLAAIGWGFYNLYLMGTTGQSFGKKIAKIKLISEETGQVIGFGGAFVRGLCHFVDN 262
Query 121 LSLFVGWLWPLWDSRRRTFADLLLRTEVRRV 151
++ +G+L PLW+S+++T+AD +++T V V
Sbjct 263 IACGIGYLAPLWESKKQTWADKIVKTIVVNV 293
>gi|326329430|ref|ZP_08195754.1| proline-rich antigen [Nocardioidaceae bacterium Broad-1]
gi|325952756|gb|EGD44772.1| proline-rich antigen [Nocardioidaceae bacterium Broad-1]
Length=186
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (43%), Positives = 51/80 (64%), Gaps = 3/80 (3%)
Query 75 NRLLLPTITGWSLGRALTGIRVVRRDGSAI-GPWRLLVRDLAHLVDTLSLFVGWLWPLWD 133
N +L TG+++G+ + GI++VRRD A G L R H++D + +G+LWPLWD
Sbjct 107 NHVLKQGRTGYTIGKGVVGIKLVRRDSQATTGVPVALARQFLHVLDGFCM-IGYLWPLWD 165
Query 134 SRRRTFADLLLRTEVRRVEP 153
+R+TFAD ++ T V VEP
Sbjct 166 DKRQTFADKIVGTLV-VVEP 184
Lambda K H
0.322 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 567840616038
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40