BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0180c Length=452 Score E Sequences producing significant alignments: (Bits) Value gi|15607321|ref|NP_214694.1| transmembrane protein [Mycobacteriu... 898 0.0 gi|289568079|ref|ZP_06448306.1| conserved membrane protein [Myco... 896 0.0 gi|340625217|ref|YP_004743669.1| hypothetical protein MCAN_01861... 768 0.0 gi|183980454|ref|YP_001848745.1| transmembrane protein [Mycobact... 689 0.0 gi|15828403|ref|NP_302666.1| hypothetical protein ML2600 [Mycoba... 686 0.0 gi|118616805|ref|YP_905137.1| transmembrane protein [Mycobacteri... 673 0.0 gi|240172717|ref|ZP_04751376.1| transmembrane protein [Mycobacte... 667 0.0 gi|296167394|ref|ZP_06849796.1| transmembrane protein [Mycobacte... 652 0.0 gi|254777442|ref|ZP_05218958.1| ABC-2 type transporter family pr... 645 0.0 gi|336460077|gb|EGO38986.1| putative membrane protein [Mycobacte... 645 0.0 gi|41409714|ref|NP_962550.1| hypothetical protein MAP3616c [Myco... 644 0.0 gi|118465577|ref|YP_884123.1| ABC transporter [Mycobacterium avi... 642 0.0 gi|342859365|ref|ZP_08716019.1| hypothetical protein MCOL_10813 ... 639 0.0 gi|254821398|ref|ZP_05226399.1| hypothetical protein MintA_15784... 632 4e-179 gi|289441555|ref|ZP_06431299.1| transmembrane protein [Mycobacte... 486 3e-135 gi|240170633|ref|ZP_04749292.1| ABC-2 type transporter family pr... 422 8e-116 gi|229489063|ref|ZP_04382929.1| conserved hypothetical protein [... 380 3e-103 gi|226361455|ref|YP_002779233.1| hypothetical protein ROP_20410 ... 380 3e-103 gi|226308712|ref|YP_002768672.1| hypothetical protein RER_52250 ... 379 5e-103 gi|111019315|ref|YP_702287.1| hypothetical protein RHA1_ro02323 ... 374 2e-101 gi|289445711|ref|ZP_06435455.1| ABC transporter subunit [Mycobac... 350 2e-94 gi|240171078|ref|ZP_04749737.1| hypothetical protein MkanA1_1733... 343 3e-92 gi|326382783|ref|ZP_08204473.1| hypothetical protein SCNU_07588 ... 339 5e-91 gi|54022545|ref|YP_116787.1| hypothetical protein nfa5780 [Nocar... 325 9e-87 gi|343924054|ref|ZP_08763617.1| hypothetical protein GOALK_002_0... 323 3e-86 gi|262203044|ref|YP_003274252.1| hypothetical protein Gbro_3154 ... 315 8e-84 gi|226359556|ref|YP_002777334.1| hypothetical protein ROP_01420 ... 287 2e-75 gi|328886573|emb|CCA59812.1| hypothetical protein SVEN_6526 [Str... 256 7e-66 gi|254386341|ref|ZP_05001648.1| ABC-2 type transporter protein [... 254 2e-65 gi|256394941|ref|YP_003116505.1| hypothetical protein Caci_5806 ... 251 3e-64 gi|311899700|dbj|BAJ32108.1| hypothetical protein KSE_63490 [Kit... 249 5e-64 gi|345003442|ref|YP_004806296.1| hypothetical protein SACTE_5972... 248 1e-63 gi|158317967|ref|YP_001510475.1| hypothetical protein Franean1_6... 242 1e-61 gi|254380837|ref|ZP_04996203.1| ABC-2 type transporter protein [... 241 2e-61 gi|302538523|ref|ZP_07290865.1| ABC-2 type transporter [Streptom... 238 2e-60 gi|184201766|ref|YP_001855973.1| hypothetical protein KRH_21200 ... 231 1e-58 gi|291455578|ref|ZP_06594968.1| conserved hypothetical protein [... 229 7e-58 gi|302546783|ref|ZP_07299125.1| YhgE/Pip domain-containing prote... 228 2e-57 gi|29826684|ref|NP_821318.1| hypothetical protein SAV_144 [Strep... 221 3e-55 gi|297202962|ref|ZP_06920359.1| ABC-2 type transporter [Streptom... 216 5e-54 gi|319948233|ref|ZP_08022389.1| hypothetical membrane protein [D... 202 7e-50 gi|111020087|ref|YP_703059.1| hypothetical protein RHA1_ro03098 ... 194 2e-47 gi|326330243|ref|ZP_08196554.1| putative Tat (twin-arginine tran... 193 6e-47 gi|288919491|ref|ZP_06413822.1| membrane protein-like protein [F... 105 1e-20 gi|226359555|ref|YP_002777333.1| hypothetical protein ROP_01410 ... 105 2e-20 gi|295705827|ref|YP_003598902.1| ABC transporter family protein ... 98.2 3e-18 gi|260905229|ref|ZP_05913551.1| hypothetical protein BlinB_07845... 72.8 1e-10 gi|333996802|ref|YP_004529414.1| phage infection protein [Trepon... 68.9 2e-09 gi|148545100|ref|YP_001272470.1| hypothetical protein Lreu_1896 ... 66.6 8e-09 gi|30263062|ref|NP_845439.1| hypothetical protein BA_3114 [Bacil... 66.2 1e-08 >gi|15607321|ref|NP_214694.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15839558|ref|NP_334595.1| hypothetical protein MT0189 [Mycobacterium tuberculosis CDC1551] gi|31791358|ref|NP_853851.1| transmembrane protein [Mycobacterium bovis AF2122/97] 68 more sequence titles Length=452 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/452 (100%), Positives = 452/452 (100%), Gaps = 0/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI Sbjct 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL Sbjct 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ Sbjct 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL Sbjct 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR Sbjct 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH Sbjct 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP Sbjct 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 >gi|289568079|ref|ZP_06448306.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289748656|ref|ZP_06508034.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289756245|ref|ZP_06515623.1| transmembrane protein [Mycobacterium tuberculosis EAS054] gi|289541832|gb|EFD45481.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289689243|gb|EFD56672.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289696832|gb|EFD64261.1| transmembrane protein [Mycobacterium tuberculosis EAS054] Length=452 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/452 (99%), Positives = 451/452 (99%), Gaps = 0/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI Sbjct 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 ALVNEDAGPAGQQIVDGLVSGLDKN FDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL Sbjct 61 ALVNEDAGPAGQQIVDGLVSGLDKNNFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ Sbjct 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL Sbjct 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR Sbjct 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH Sbjct 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP Sbjct 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 >gi|340625217|ref|YP_004743669.1| hypothetical protein MCAN_01861 [Mycobacterium canettii CIPT 140010059] gi|340003407|emb|CCC42527.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=452 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/452 (98%), Positives = 444/452 (99%), Gaps = 0/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIA TLALMSALAALYLGGILNPMTNLRHFPI Sbjct 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIAITLALMSALAALYLGGILNPMTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL Sbjct 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDFGASAVTPTRTDRP ITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ Sbjct 121 RDFGASAVTPTRTDRPTITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGGVALAGAAA GLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGVALAGAAATGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL Sbjct 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 G +VWLYGVFAI+AVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVP FF Sbjct 301 GGEVWLYGVFAIMAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPPFFG 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH Sbjct 361 WLAEFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAVEMAIA EHQAQYQAR SARES+S+QP Sbjct 421 RIPGAVEMAIAAEHQAQYQARHSARESASKQP 452 >gi|183980454|ref|YP_001848745.1| transmembrane protein [Mycobacterium marinum M] gi|183173780|gb|ACC38890.1| conserved transmembrane protein [Mycobacterium marinum M] Length=457 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/456 (82%), Positives = 409/456 (90%), Gaps = 5/456 (1%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQ+QPR AAPNPKR++K++RTVRFW AP+ TLALMSALAALYLGGILNP TNLR FPI Sbjct 1 MSQSQPRHAAPNPKRSIKSLRTVRFWTAPVVITLALMSALAALYLGGILNPTTNLRQFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 ALVNEDAGPAG+QIVDG+V+GLDKNKFD+RVV ++A+RLLD A VYGSA+IPPTFSSQL Sbjct 61 ALVNEDAGPAGKQIVDGIVAGLDKNKFDVRVVDHEQAQRLLDRAQVYGSAVIPPTFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDF SAV P TDRP ITISTNPRAGTL ASIAGQTLT+A+ N KVGER+TAEVAAQ Sbjct 121 RDFAVSAVQPGSTDRPVITISTNPRAGTLGASIAGQTLTQAMAAANSKVGERVTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L+GA+A GLASPIDVK+T YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLSGASALGLASPIDVKTTVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DS+LGYVPAEFGPVYRFAEQVNISRFRTLL+KW +M VLALLTS VY+AIAHGLGMPIP Sbjct 241 DSLLGYVPAEFGPVYRFAEQVNISRFRTLLLKWGLMTVLALLTSAVYMAIAHGLGMPIPA 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GW++WLYGVFAI AVGVTSSSLIAVLGSMGLL SML+FVILGLPSAGATVPLEAVP FFR Sbjct 301 GWKLWLYGVFAITAVGVTSSSLIAVLGSMGLLASMLVFVILGLPSAGATVPLEAVPPFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLGVRSLLYLNG ++GLS AL MT+IGL+IGLLLGG THLYDR FH Sbjct 361 WLAKFEPMHQVFLGVRSLLYLNGQPESGLSHALLMTAIGLVIGLLLGGLTTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSAR-----ESSSEQ 451 RIPGAVEMAIA EHQAQ+QA++ AR ESSSE+ Sbjct 421 RIPGAVEMAIAAEHQAQHQAKERARDRDSTESSSEE 456 >gi|15828403|ref|NP_302666.1| hypothetical protein ML2600 [Mycobacterium leprae TN] gi|221230880|ref|YP_002504296.1| hypothetical protein MLBr_02600 [Mycobacterium leprae Br4923] gi|13093833|emb|CAC32132.1| probable conserved membrane protein [Mycobacterium leprae] gi|219933987|emb|CAR72700.1| probable conserved membrane protein [Mycobacterium leprae Br4923] Length=465 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/450 (77%), Positives = 388/450 (87%), Gaps = 0/450 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQ QPR A P R+ KAIRTVRFW +PI TL+LMSALAALYLGGILNP TNL+HFP+ Sbjct 1 MSQPQPRHAPFAPTRDAKAIRTVRFWASPIVITLSLMSALAALYLGGILNPTTNLQHFPL 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGPAG QIV+GL++GLDKNKFD+RVVS EA++LLD+A VYGSA+IPP+FSSQL Sbjct 61 AVVNEDAGPAGAQIVEGLLAGLDKNKFDVRVVSCREAQQLLDSAGVYGSAVIPPSFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDFG SAV PT DRP I +STNPRAG L +SIAGQTLT+A+T+VN K G+RLTAEVAAQ Sbjct 121 RDFGTSAVLPTHADRPVIMVSTNPRAGALGSSIAGQTLTQAITMVNSKAGQRLTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L GAAA GL SPID+K YNPLPNGTGNGLSAFYYALLLLL GFTGSIVVSTLV Sbjct 181 TGGAHLTGAAALGLTSPIDIKLAIYNPLPNGTGNGLSAFYYALLLLLTGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DSMLGY+P E GPVY +AEQ+NISRF TL+VKW +MVVLAL+TS VYLAIAHGLGMPIPL Sbjct 241 DSMLGYIPTEVGPVYHYAEQINISRFHTLVVKWGLMVVLALITSAVYLAIAHGLGMPIPL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GWQ+WLYGVFAI AVG+TSSSLIA LGSMGLLVSM IF+ILGLPSAGATVPLEAVP FFR Sbjct 301 GWQLWLYGVFAISAVGITSSSLIAGLGSMGLLVSMFIFMILGLPSAGATVPLEAVPPFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WL++FEP+HQ+FLGVRSLLYL G+AD+G+SQAL MT++G+ IGLLLGG +T +YDR H Sbjct 361 WLSEFEPLHQLFLGVRSLLYLKGHADSGMSQALFMTALGMAIGLLLGGVVTRIYDRGGCH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSE 450 RIPGAV MAIA HQAQ+QAR +S Sbjct 421 RIPGAVGMAIAEWHQAQHQARLRPNKSGKR 450 >gi|118616805|ref|YP_905137.1| transmembrane protein [Mycobacterium ulcerans Agy99] gi|118568915|gb|ABL03666.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99] Length=457 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/456 (81%), Positives = 402/456 (89%), Gaps = 5/456 (1%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQ+QPR AAPNPKR++K++RTVRFW AP+ LALMSALAALYLGGILNP TNLR FPI Sbjct 1 MSQSQPRHAAPNPKRSIKSLRTVRFWTAPVVIILALMSALAALYLGGILNPTTNLRQFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 ALVNEDAGPAG+QIVDG+V+GLDKNKFD+RVV ++A+RLLD A VYGSA++PPTFSSQL Sbjct 61 ALVNEDAGPAGKQIVDGIVAGLDKNKFDVRVVDHEQAQRLLDRAQVYGSAVVPPTFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDF SAV P TDRP ITI TN RAGTL ASIAGQTLT+A+ N KVGER+TAEVAAQ Sbjct 121 RDFAVSAVQPGSTDRPVITIFTNSRAGTLGASIAGQTLTQAMAAANSKVGERVTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L+GA+A GLASPIDVK+T YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLSGASALGLASPIDVKTTVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DS+LGYVPAEFGPVY FAEQVNISRFRTLL+KW +M VLALLTS VY+AIAH LGMPIP Sbjct 241 DSLLGYVPAEFGPVYHFAEQVNISRFRTLLLKWGLMTVLALLTSAVYMAIAHELGMPIPA 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GW++WLYGVFAI AVGVTSSSLIAVLGSMGLL SML+FV LGLPSAGATVPLEAVP FFR Sbjct 301 GWKLWLYGVFAITAVGVTSSSLIAVLGSMGLLASMLVFVTLGLPSAGATVPLEAVPPFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLGVRSLLYLNG ++GLS AL MT+IGL+IGLLLGG THLYDR FH Sbjct 361 WLAKFEPMHQVFLGVRSLLYLNGQPESGLSHALLMTAIGLVIGLLLGGLTTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSAR-----ESSSEQ 451 RIPGAVEMAIA EHQAQ+ A++ AR ESSSE+ Sbjct 421 RIPGAVEMAIAAEHQAQHHAKERARDRDSTESSSEE 456 >gi|240172717|ref|ZP_04751376.1| transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=460 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/456 (83%), Positives = 408/456 (90%), Gaps = 4/456 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQ+ PR AAPNPKR++K++RTVRFW API TLALMSALAALYLGGILNP TNLRHFPI Sbjct 1 MSQSHPRHAAPNPKRSIKSVRTVRFWAAPILITLALMSALAALYLGGILNPATNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VN+DAGP G+QIV+GLV+GLDK+K+D+RVVS DEA+RLLD A VYGSA+IPPTFSS L Sbjct 61 AVVNQDAGPTGKQIVEGLVAGLDKDKYDLRVVSHDEAKRLLDRAEVYGSAVIPPTFSSAL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RD+ SAV PT DRP ITISTNPRAGTL +SIA QTLT+A+ VVN KVG+RLTA+VAAQ Sbjct 121 RDYAMSAVQPTHADRPTITISTNPRAGTLGSSIAAQTLTQAMAVVNSKVGQRLTADVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG LAGAAA GL +PIDVKST YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLAGAAALGLTNPIDVKSTVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 DSMLGYVPAEFGPVYRF EQV ISRFRTLL+KW +M VLALLTS VYLAIAHGLGMP+ L Sbjct 241 DSMLGYVPAEFGPVYRFGEQVRISRFRTLLLKWGLMTVLALLTSAVYLAIAHGLGMPVSL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GWQ+WLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVI GLPSAGATVPLEAVP FFR Sbjct 301 GWQLWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVIFGLPSAGATVPLEAVPPFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA FEPMHQVFLGVRSLLYL+G+ADAGLS AL MTSIGL+IGLLLGG ITHLYDR FH Sbjct 361 WLATFEPMHQVFLGVRSLLYLDGHADAGLSHALAMTSIGLVIGLLLGGIITHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSAR----ESSSEQP 452 RIPGAVE+AIA EHQAQ+QAR+ AR E +SE P Sbjct 421 RIPGAVELAIAAEHQAQHQARERARAGAVEGTSENP 456 >gi|296167394|ref|ZP_06849796.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897338|gb|EFG76942.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=465 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/448 (76%), Positives = 387/448 (87%), Gaps = 0/448 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQ++P+ AAPNP RN+KA+RTVRFW AP+ TLALMSAL ALYLGGILNPMTNLRHFPI Sbjct 1 MSQSRPQHAAPNPNRNIKAVRTVRFWAAPLVITLALMSALCALYLGGILNPMTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGPAG ++ LV+GLDKNK+D+RV++ AR LDT VYGS LIPP+FSS+L Sbjct 61 AVVNEDAGPAGAELAGRLVNGLDKNKYDVRVLTRAAARHQLDTGHVYGSVLIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RD G SA+ P +RP I ISTNPRAGTL ASIA QTL A+ V NG+VGERL A+V AQ Sbjct 121 RDLGTSAMLPGPAERPVIRISTNPRAGTLGASIAAQTLNMAMGVANGEVGERLLAQVKAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG LAGAA GL+SPI+++ST YNPLP+GTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLAGAAEEGLSSPIEIESTVYNPLPDGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+MV+L L TSG Y+AIAHGLGMPI L Sbjct 241 DALLGYVPAEFGPVYRFAEQVKISRFQTLLLKWAIMVLLGLFTSGAYVAIAHGLGMPIDL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 GWQ+W YGVFAI AVG+TSSSL++VLG+ GLLVS+LIFVILGLPSAGATVPLEA P FF+ Sbjct 301 GWQLWAYGVFAIAAVGITSSSLLSVLGTGGLLVSLLIFVILGLPSAGATVPLEATPPFFQ 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLG RSLLY G+AD G+SQAL MT+IGL+IGLLLGG +THLYDR FH Sbjct 361 WLAEFEPMHQVFLGARSLLYFKGHADTGISQALIMTTIGLVIGLLLGGIVTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESS 448 RIPGAVEMAIA EHQAQ++ARQS E + Sbjct 421 RIPGAVEMAIATEHQAQHKARQSKHERT 448 >gi|254777442|ref|ZP_05218958.1| ABC-2 type transporter family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=488 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/452 (74%), Positives = 381/452 (85%), Gaps = 0/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M+++ P+ AAPNP RN+KA+RTVRFW AP+ TLALMSAL ALYLGGILNP TNLRHFPI Sbjct 1 MARSHPQHAAPNPNRNIKAVRTVRFWAAPLVITLALMSALCALYLGGILNPTTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGP G QIVD L +GLD+NKFDIRV+S DEA+ LDT VYGS LIPP+FSS+L Sbjct 61 AVVNEDAGPGGAQIVDRLATGLDRNKFDIRVLSRDEAKHQLDTGRVYGSLLIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDF SAV+P R D+P+IT+STNPRAGTL ASIAGQTL A+ NG +R+ AEV AQ Sbjct 121 RDFATSAVSPARPDKPSITVSTNPRAGTLGASIAGQTLNSAMGTANGIAAQRVMAEVTAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L GA AGL+SPI+++S YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLPGATQAGLSSPIEIQSVVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+MV+L LLTS VYLAIA+GLGMPI L Sbjct 241 DALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMVLLGLLTSAVYLAIANGLGMPIDL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 W++W YGVFAI AVG+TSSSL++VLG+ G+LVSML+FVI GLPSAGATVPLEA P FR Sbjct 301 SWELWAYGVFAIAAVGITSSSLLSVLGTAGMLVSMLVFVIFGLPSAGATVPLEATPPLFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLG RSLLY G DAGLSQALTMTS GL+IGLLLGG +THLYDR FH Sbjct 361 WLAEFEPMHQVFLGTRSLLYFGGRGDAGLSQALTMTSAGLVIGLLLGGIVTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAVE AIA +HQAQ+QAR+ + P Sbjct 421 RIPGAVEFAIAQDHQAQHQARRGKSTQPPDSP 452 >gi|336460077|gb|EGO38986.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=467 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/452 (74%), Positives = 383/452 (85%), Gaps = 0/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M+++ P+ AAPNP RN+KA+RTVRFW AP+ TLALMSAL ALYLGGILNP TNLRHFPI Sbjct 1 MARSHPQHAAPNPNRNIKAVRTVRFWAAPLVITLALMSALCALYLGGILNPTTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGP G QIVD L +GLD+NKFDIRV+S DEA+ LDT VYGS LIPP+FSS+L Sbjct 61 AVVNEDAGPGGAQIVDRLATGLDRNKFDIRVLSRDEAKHQLDTGRVYGSLLIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDF SAV+P R D+P+IT+STNPRAGTL ASIAGQTL A+ NG +R+ AEV AQ Sbjct 121 RDFATSAVSPARPDKPSITVSTNPRAGTLGASIAGQTLNSAMGTANGIAAQRVMAEVTAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L GA AGL+SPI+++S YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLPGATQAGLSSPIEIQSVVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+M++L LLTS VYLAIA GLGMPI L Sbjct 241 DALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMLLLGLLTSAVYLAIADGLGMPIDL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 W++W YGVFAI AVG+TSSSL++VLG+ G+LVSML+FVI GLPSAGATVPLEA P FR Sbjct 301 SWELWAYGVFAIAAVGITSSSLLSVLGTAGMLVSMLVFVIFGLPSAGATVPLEATPPLFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLG RSLLY G DAGLSQALTMTS GL+IGLLLGG +TH+YDR FH Sbjct 361 WLAEFEPMHQVFLGTRSLLYFGGRGDAGLSQALTMTSAGLVIGLLLGGIVTHVYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAVE AIA +HQAQ+QAR+ S++ QP Sbjct 421 RIPGAVEFAIAQDHQAQHQARRGKSHSAAGQP 452 >gi|41409714|ref|NP_962550.1| hypothetical protein MAP3616c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398546|gb|AAS06166.1| hypothetical protein MAP_3616c [Mycobacterium avium subsp. paratuberculosis K-10] Length=474 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/452 (75%), Positives = 383/452 (85%), Gaps = 3/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M+++ P+ AAPNP RN+KA+RTVRFW AP+ TLALMSAL ALYLGGILNP TNLRHFPI Sbjct 1 MARSHPQHAAPNPNRNIKAVRTVRFWAAPLVITLALMSALCALYLGGILNPTTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGP G QIVD L +GLD+NKFDIRV+S DEA+ LDT VYGS LIPP+FSS+L Sbjct 61 AVVNEDAGPGGAQIVDRLATGLDRNKFDIRVLSRDEAKHQLDTGRVYGSLLIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDF SAV+P R D+P+IT+STNPRAGTL ASIAGQTL A+ NG +R+ AEV AQ Sbjct 121 RDFATSAVSPARPDKPSITVSTNPRAGTLGASIAGQTLNSAMGTANGIAAQRVMAEVTAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L GA AGL+SPI+++S YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLPGATQAGLSSPIEIQSVVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+M++L LLTS VYLAIA GLGMPI L Sbjct 241 DALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMLLLGLLTSAVYLAIADGLGMPIDL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 W++W YGVFAI AVG+TSSSL++VLG+ G+LVSML+FVI GLPSAGATVPLEA P FR Sbjct 301 SWELWAYGVFAIAAVGITSSSLLSVLGTAGMLVSMLVFVIFGLPSAGATVPLEATPPLFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLG RSLLY G DAGLSQALTMTS GL+IGLLLGG +TH+YDR FH Sbjct 361 WLAEFEPMHQVFLGTRSLLYFGGRGDAGLSQALTMTSAGLVIGLLLGGIVTHVYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAVE AIA +HQAQ+QAR R S++QP Sbjct 421 RIPGAVEFAIAQDHQAQHQAR---RGKSTQQP 449 >gi|118465577|ref|YP_884123.1| ABC transporter [Mycobacterium avium 104] gi|118166864|gb|ABK67761.1| ABC-2 type transporter family protein [Mycobacterium avium 104] Length=474 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/452 (74%), Positives = 380/452 (85%), Gaps = 0/452 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M+++ P+ AAPNP RN+KA+RTVRFW AP+ TLALMSAL ALYLGGILNP TNLRHFPI Sbjct 1 MARSHPQHAAPNPNRNIKAVRTVRFWAAPLVITLALMSALCALYLGGILNPTTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGP G QIVD L +GLD+NKFDIRV+S DEA+ LDT VYGS LIPP+FSS+L Sbjct 61 AVVNEDAGPGGAQIVDRLATGLDRNKFDIRVLSRDEAKHQLDTGRVYGSLLIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDF SAV+P R D+P+IT+STNPRAGTL ASIAGQTL A+ NG +R+ AEV AQ Sbjct 121 RDFATSAVSPARPDKPSITVSTNPRAGTLGASIAGQTLNSAMGTANGIAAQRVMAEVTAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L GA AGL+SPI+++S YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGTPLPGATQAGLSSPIEIQSVVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+MV+L LLTS VYLAIA+GLGMPI L Sbjct 241 DALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMVLLGLLTSAVYLAIANGLGMPIDL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 W++W YGVFAI AVG+TSSSL++VLG+ G+LVSML+FVI GLPSAGATVPLEA P FR Sbjct 301 SWELWAYGVFAIAAVGITSSSLLSVLGTAGMLVSMLVFVIFGLPSAGATVPLEATPPLFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLG RSLLY G DAGLSQALTMTS GL+IGLLLGG +THLYDR FH Sbjct 361 WLAEFEPMHQVFLGTRSLLYFGGRGDAGLSQALTMTSAGLVIGLLLGGIVTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSARESSSEQP 452 RIPGAV AIA +HQAQ+QAR+ + P Sbjct 421 RIPGAVGFAIAQDHQAQHQARRGKSTQPPDSP 452 >gi|342859365|ref|ZP_08716019.1| hypothetical protein MCOL_10813 [Mycobacterium colombiense CECT 3035] gi|342133606|gb|EGT86809.1| hypothetical protein MCOL_10813 [Mycobacterium colombiense CECT 3035] Length=477 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/442 (75%), Positives = 380/442 (86%), Gaps = 0/442 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M + P+ AAPNP RN+KAIRTVRFW AP+ T+ALMSAL ALYLGGILNP TNLRHFPI Sbjct 1 MPSSHPQHAAPNPDRNIKAIRTVRFWAAPLVITVALMSALCALYLGGILNPTTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGP G QI D LV+GLDKNKFD+RV+S EAR LDT VYG LIPP+FSS+L Sbjct 61 AVVNEDAGPGGAQIADRLVNGLDKNKFDVRVLSRGEARHQLDTGRVYGQVLIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RD +SAV P R DRP+IT+STNPRAGTL ASIA QTL+ A+ + NG G+R+ AEVAAQ Sbjct 121 RDLPSSAVLPGRVDRPSITVSTNPRAGTLGASIAAQTLSTAMGIANGMAGQRVIAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG LAGA GL++PID+++ YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLAGAVQVGLSAPIDIQANVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+MV+L LLTS VYLAIA GLGMPI Sbjct 241 DALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMVLLGLLTSAVYLAIADGLGMPIDH 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 WQ+W +GVFAI AVG+TSSSL++VLG+ G+LVS+LIFVILGLPSAGATVPLEA P+FFR Sbjct 301 SWQLWAFGVFAIAAVGITSSSLLSVLGTAGMLVSLLIFVILGLPSAGATVPLEATPSFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA FEPMHQVFLG RSLLY G+ DAGL+Q+LTMT+IGL++GLLLGG +THLYDR FH Sbjct 361 WLAAFEPMHQVFLGTRSLLYFGGHGDAGLTQSLTMTTIGLVVGLLLGGIVTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQ 442 RIPGAVE+AIA EHQAQ+QAR+ Sbjct 421 RIPGAVELAIAQEHQAQHQARR 442 >gi|254821398|ref|ZP_05226399.1| hypothetical protein MintA_15784 [Mycobacterium intracellulare ATCC 13950] Length=474 Score = 632 bits (1630), Expect = 4e-179, Method: Compositional matrix adjust. Identities = 333/445 (75%), Positives = 381/445 (86%), Gaps = 0/445 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M Q+ + AAPNPK N+KAIRTVRFW AP+ TLALMSAL ALYLGGILNP TNL HFPI Sbjct 1 MPQSHAQHAAPNPKHNIKAIRTVRFWAAPLIITLALMSALCALYLGGILNPSTNLHHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 A+VNEDAGP G QI D LV+GLDKNKFD+RV+S EA+R LDT VYGS +IPP+FSS+L Sbjct 61 AVVNEDAGPGGAQITDRLVNGLDKNKFDVRVLSRGEAKRQLDTGRVYGSVVIPPSFSSKL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDFG SAV P R +RP+IT+STNPRAGTL ASIAGQTL+ A+ + NG G+R+TAEVAAQ Sbjct 121 RDFGTSAVAPIRAERPSITVSTNPRAGTLGASIAGQTLSTAMGMANGIAGQRVTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 TGG L GAA GLA+PI+++S YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV Sbjct 181 TGGAPLPGAAQVGLAAPIEIQSVVYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D++LGYVPAEFGPVYRFAEQV ISRF+TLL+KWA+MV+L LLTS VY+ IA LGMPI L Sbjct 241 DALLGYVPAEFGPVYRFAEQVRISRFQTLLLKWAMMVLLGLLTSAVYVWIADALGMPIDL 300 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 WQ+W +GVFAI AVG+TSSSL++VLG+ G+LVSMLIFVILGLPSAGATVPLEA P+FFR Sbjct 301 SWQLWAFGVFAIAAVGITSSSLLSVLGTAGMLVSMLIFVILGLPSAGATVPLEATPSFFR 360 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WLA+FEPMHQVFLG RSLLY G DAGLSQALTMTS+GL+IGLLLGG +THLYDR FH Sbjct 361 WLAEFEPMHQVFLGARSLLYFGGRGDAGLSQALTMTSVGLVIGLLLGGIVTHLYDRKGFH 420 Query 421 RIPGAVEMAIAVEHQAQYQARQSAR 445 RI GA +A+A EHQAQ++AR+ R Sbjct 421 RIQGAAALALAQEHQAQHKARRGKR 445 >gi|289441555|ref|ZP_06431299.1| transmembrane protein [Mycobacterium tuberculosis T46] gi|289414474|gb|EFD11714.1| transmembrane protein [Mycobacterium tuberculosis T46] Length=245 Score = 486 bits (1251), Expect = 3e-135, Method: Compositional matrix adjust. Identities = 244/245 (99%), Positives = 245/245 (100%), Gaps = 0/245 (0%) Query 208 LPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFR 267 +PNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFR Sbjct 1 MPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFR 60 Query 268 TLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLG 327 TLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLG Sbjct 61 TLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLG 120 Query 328 SMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADA 387 SMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADA Sbjct 121 SMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADA 180 Query 388 GLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRIPGAVEMAIAVEHQAQYQARQSARES 447 GLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRIPGAVEMAIAVEHQAQYQARQSARES Sbjct 181 GLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRIPGAVEMAIAVEHQAQYQARQSARES 240 Query 448 SSEQP 452 SSEQP Sbjct 241 SSEQP 245 >gi|240170633|ref|ZP_04749292.1| ABC-2 type transporter family protein [Mycobacterium kansasii ATCC 12478] Length=469 Score = 422 bits (1084), Expect = 8e-116, Method: Compositional matrix adjust. Identities = 211/425 (50%), Positives = 292/425 (69%), Gaps = 11/425 (2%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 + Q P P P+P +RTVRFW+API TLA+++ L+ L+ G LNP N +FPI Sbjct 7 LRQTTPYPL-PHP------LRTVRFWLAPIVVTLAVLAGLSWLFFGSSLNPKKNFHNFPI 59 Query 61 ALVNEDAGPA--GQQIVDGLVSGLDK-NKFDIRVVSPDEARRLLDTAAVYGSALIPPTFS 117 A+VNED G A G +I D L + L++ +KFDIR+++ +EA DT +YG+ +IPP FS Sbjct 60 AIVNEDTGSAQAGAKITDALKTKLEEGHKFDIRLLTSEEANHQFDTGRIYGALVIPPDFS 119 Query 118 SQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEV 177 +L + P +P ITI TNPRA + A IA L +A+ N K G++LT + Sbjct 120 DKLLGLLQTVSKPGELTKPVITIETNPRASAMGAGIAESVLKKAMVDYNTKAGKKLT-DA 178 Query 178 AAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVS 237 AA GG L+ +AA LA+P+DV+ N LP+GTG GLS+++Y L+LL+ G TG++VVS Sbjct 179 AAAGGGDQLSASAAWVLANPLDVRVEQRNELPDGTGIGLSSYFYTLMLLIGGVTGALVVS 238 Query 238 TLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMP 297 LV++MLGY PAEFGP+YR A++V +S FRTLL+KW ++ V++L +S VYL +A GMP Sbjct 239 MLVEAMLGYSPAEFGPMYRLADRVRVSWFRTLLLKWMLVAVVSLFSSAVYLWVAKAFGMP 298 Query 298 IPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPA 357 +P W +WL+GVF ++ VGV S+SLI LG++G+L ++ IF LGLPS GAT+PLEA P Sbjct 299 VPHPWALWLFGVFIMLTVGVASTSLITALGTLGILTALFIFNFLGLPSTGATIPLEAEPK 358 Query 358 FFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRS 417 F WLA FEPM QVF+G R+LLY +G DAGL ++LT+T IGL+IG++ G +T +YDR Sbjct 359 IFSWLANFEPMRQVFIGTRALLYFDGRLDAGLGRSLTLTVIGLVIGVVFGAVLTWIYDRK 418 Query 418 SFHRI 422 HRI Sbjct 419 GIHRI 423 >gi|229489063|ref|ZP_04382929.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229324567|gb|EEN90322.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=484 Score = 380 bits (976), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 197/418 (48%), Positives = 279/418 (67%), Gaps = 16/418 (3%) Query 20 IRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAG-------PA-- 70 + T RFW+ P+ LMSALAALY+GGIL+P +L FPIALVN+D G PA Sbjct 60 MHTPRFWLTPLIVVTLLMSALAALYMGGILDPKKHLDQFPIALVNQDEGDTLPGGDPADR 119 Query 71 ---GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASA 127 G IV GL +G+D K D++ + EA+ L++ +YG+ +IP F+ + ++ Sbjct 120 KNFGNDIVAGLENGIDHQKIDLQQIGIAEAQSRLNSGTLYGAIVIPSDFTKRTIILAEAS 179 Query 128 VTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTG----G 183 V ++P ITI TNPRAG+++AS+ T AL VN +GE+LTA V AQ G Sbjct 180 VVAGDVEQPIITIYTNPRAGSVSASLVQSIGTTALASVNKNMGEQLTALVTAQLEAGGTG 239 Query 184 VALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSM 243 ++GA+ L +P++V + A++PLP+GTG GL AFY+ALLL+LAGFTG+ VV++LVD M Sbjct 240 TQISGASRLLLENPVNVLTVAHDPLPDGTGFGLVAFYFALLLVLAGFTGATVVNSLVDGM 299 Query 244 LGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQ 303 LGY P EFGP++ + V I+RFRTLLVKWA M+VL+ + S ++ I+ LGMP+ G Sbjct 300 LGYAPTEFGPLFVQNDVVGINRFRTLLVKWAFMIVLSGIVSALFQWISRALGMPVTHGLA 359 Query 304 VWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLA 363 +W YG I AVG+T+ S++A GS+G+L+++ +FVIL LPS+G T+PLEA P + WLA Sbjct 360 LWEYGALVITAVGITAMSVMAAFGSLGMLINLFVFVILALPSSGGTIPLEASPRLYAWLA 419 Query 364 QFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHR 421 QFEPMHQ+++G RS+L+ +AGL A+ MT +GL+IG++LG T YDR + R Sbjct 420 QFEPMHQIYMGTRSILFFGARGEAGLLHAVWMTLVGLLIGVVLGIVTTRFYDRKGYER 477 >gi|226361455|ref|YP_002779233.1| hypothetical protein ROP_20410 [Rhodococcus opacus B4] gi|226239940|dbj|BAH50288.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=447 Score = 380 bits (975), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 201/422 (48%), Positives = 280/422 (67%), Gaps = 16/422 (3%) Query 16 NVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA----- 70 + +RT RFW+AP+ +MS LAALY+GG+LNP +L HFPIALV++D G Sbjct 10 KMSVLRTPRFWIAPVVLVSVVMSLLAALYMGGMLNPPEHLNHFPIALVDQDEGDTLPNSD 69 Query 71 -------GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDF 123 G QI GLV G+D +K ++R + +A+ LD +YG+ +IP F+ + Sbjct 70 PPQQQNFGNQIAAGLVEGVDPDKIELRQIGIAQAQSALDNGEIYGAIVIPSDFTKRTLIL 129 Query 124 GASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGG 183 ++V P +RP ITI TNPRAGT++A++ A+ N +GE+LT +V Q Sbjct 130 AQASVIPGDVERPVITIYTNPRAGTISANLVQNIGETAMDKANQTMGEQLTTQVTQQLQA 189 Query 184 VA----LAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTL 239 A L+GA+ L PIDV+ A+NPLP+GTG GL+AFYYALL++LAGFTG+ + STL Sbjct 190 TAPDLQLSGASRLVLDDPIDVRVVAHNPLPDGTGFGLAAFYYALLIVLAGFTGATIASTL 249 Query 240 VDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIP 299 +D MLG+ P E GP+Y E V ISRF TLL+KWAVMV LA++ SG+YL I+ LG+PI Sbjct 250 IDGMLGFTPTEVGPLYLHNEAVPISRFNTLLIKWAVMVALAMIVSGLYLWISSALGLPIT 309 Query 300 LGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFF 359 +W YG FAI AVG+T+ S++A G++GLL+++L+FV+L LPS+G T+PLEA P + Sbjct 310 DPLALWEYGAFAIAAVGITAMSVMAAFGNLGLLINLLVFVVLALPSSGGTIPLEAAPRLY 369 Query 360 RWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSF 419 WL +FEPMHQ+++GVR++++ + DAGL A+ MT GL+IGL+ G IT YDR Sbjct 370 TWLGEFEPMHQIYIGVRAIMFFGASGDAGLIHAVWMTLAGLLIGLVFGAVITRFYDRKGL 429 Query 420 HR 421 HR Sbjct 430 HR 431 >gi|226308712|ref|YP_002768672.1| hypothetical protein RER_52250 [Rhodococcus erythropolis PR4] gi|226187829|dbj|BAH35933.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=437 Score = 379 bits (973), Expect = 5e-103, Method: Compositional matrix adjust. Identities = 197/429 (46%), Positives = 283/429 (66%), Gaps = 17/429 (3%) Query 10 APNPKRNVKAI-RTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAG 68 + NP+ + + + T RFW+ P+ LMSALAALY+GGIL+P +L FPIALVN+D G Sbjct 2 SKNPEPSARTVMHTPRFWLTPLIVVTLLMSALAALYMGGILDPKKHLDQFPIALVNQDEG 61 Query 69 -------PA-----GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTF 116 PA G IV GL +G+D K D++ + EA+ L++ +YG+ +IP F Sbjct 62 DTLPGGDPADRKNFGNDIVAGLENGIDHQKIDLQQIGIAEAQSRLNSGTLYGAIVIPSDF 121 Query 117 SSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAE 176 + + ++V ++P ITI TNPRAG+++AS+ T AL VN +GE+LT Sbjct 122 TKRTIILAEASVVAGDVEQPIITIYTNPRAGSVSASLVQSIGTTALASVNKNMGEQLTTL 181 Query 177 VAAQTG----GVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTG 232 V Q G ++GA+ L +P++V + A++PLP+GTG GL AFY+ALLL+LAGFTG Sbjct 182 VTQQLEAGGTGTQISGASRLLLENPVNVLTVAHDPLPDGTGFGLVAFYFALLLVLAGFTG 241 Query 233 SIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAH 292 + VV++LVD MLGY P EFGP++ + V I+RFRTLLVKWA M+VL+ + S ++ I+ Sbjct 242 ATVVNSLVDGMLGYAPTEFGPLFVQNDVVGINRFRTLLVKWAFMIVLSGIVSALFQWISR 301 Query 293 GLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPL 352 LGMP+ G +W YG I AVG+T+ S++A GS+G+L+++ +FVIL LPS+G T+PL Sbjct 302 ALGMPVTHGLALWEYGALVITAVGITAMSVMAAFGSLGMLINLFVFVILALPSSGGTIPL 361 Query 353 EAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITH 412 EA P + WLAQFEPMHQ+++G RS+L+ +AGL A+ MT +GL+IG++LG T Sbjct 362 EASPRLYAWLAQFEPMHQIYMGTRSILFFGARGEAGLLHAVWMTLVGLLIGVVLGIVTTR 421 Query 413 LYDRSSFHR 421 YDR + R Sbjct 422 FYDRKGYER 430 >gi|111019315|ref|YP_702287.1| hypothetical protein RHA1_ro02323 [Rhodococcus jostii RHA1] gi|110818845|gb|ABG94129.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=447 Score = 374 bits (959), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 203/421 (49%), Positives = 279/421 (67%), Gaps = 16/421 (3%) Query 17 VKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA------ 70 + +RT RFW+AP+ +MS LAALY+GG+LNP +L HFPIALVN+D G Sbjct 11 MSVLRTPRFWIAPLLLVSVVMSLLAALYMGGMLNPTKHLNHFPIALVNQDEGDTTPNSNP 70 Query 71 ------GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFG 124 G QI GLV G+D +K ++R + +A+ LD +YG+ +IP F+ + Sbjct 71 PQQQNFGDQIAAGLVEGVDPDKVELRQIGIAQAQSALDNGEIYGAIVIPSDFTKRTFILA 130 Query 125 ASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGV 184 + V P +RP ITI TNPRAGT++A++ AL N +G++LT +V Q Sbjct 131 QAGVIPGDVERPVITIYTNPRAGTISANLVQNIGEMALDKANQTMGQQLTTQVTQQLQAT 190 Query 185 A----LAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLV 240 A L+GA+ L PIDV+ A+NPLP+GTG GL+AFYYALL++LAGFTG+ + STL+ Sbjct 191 APDLQLSGASRLVLDDPIDVRVVAHNPLPDGTGFGLAAFYYALLIVLAGFTGATIASTLI 250 Query 241 DSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPL 300 D MLG+ P E GP+Y E V ISRF TLL+KWAVMVVLA++ SG+YL I+ LG+PI Sbjct 251 DGMLGFTPTEVGPLYLHNEAVPISRFNTLLIKWAVMVVLAMIVSGLYLWISSALGLPITD 310 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 +W YG FAI AVG+T+ S++A G++GLL+++L+FV+L LPS+G T+PLEA P + Sbjct 311 PLALWEYGAFAIAAVGITAMSVMAAFGNLGLLINLLVFVVLALPSSGGTIPLEAAPRLYT 370 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 WL +FEPMHQ+++GVR++++ DAGL A+ MT GL+IGL+ G IT YDR H Sbjct 371 WLGEFEPMHQIYIGVRAIMFFGAAGDAGLIHAVWMTLAGLLIGLVFGAVITRFYDRKGLH 430 Query 421 R 421 R Sbjct 431 R 431 >gi|289445711|ref|ZP_06435455.1| ABC transporter subunit [Mycobacterium tuberculosis CPHL_A] gi|289418669|gb|EFD15870.1| ABC transporter subunit [Mycobacterium tuberculosis CPHL_A] Length=235 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 193/219 (89%), Positives = 193/219 (89%), Gaps = 0/219 (0%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI Sbjct 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 Query 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL Sbjct 61 ALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQL 120 Query 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ Sbjct 121 RDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQ 180 Query 181 TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAF 219 TGGVALAG G P P G F Sbjct 181 TGGVALAGRRRPGWPVPSMSNPPPITHCPTAPATGCRRF 219 >gi|240171078|ref|ZP_04749737.1| hypothetical protein MkanA1_17336 [Mycobacterium kansasii ATCC 12478] Length=402 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 184/398 (47%), Positives = 254/398 (64%), Gaps = 2/398 (0%) Query 25 FWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPAGQQIVDGLVSGLDK 84 W+ PI +ALM L Y+GG LNP NLRHFPIA+VN+D G G+ I DGL + +D+ Sbjct 1 MWLGPIIVAVALMYGLGLFYVGGALNPGANLRHFPIAIVNQDTGMTGRLIADGLAANMDR 60 Query 85 NKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVTPTRTDRPAITISTNP 144 N+FDIRV+ D+AR L+T VY L+P S +L + + P + +P ITIST Sbjct 61 NQFDIRVLPADQARDQLETGKVYAQVLLPWDLSQRLFALPDATLQPGQPLKPVITISTGQ 120 Query 145 RAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAGAAAAGLASPIDVKSTA 204 R+G +AA IA + + +AL VVN + G LTA++ Q+ G + G A LASPIDV + Sbjct 121 RSGAVAAVIAEKAMRKALAVVNARAGTMLTAQLRRQSDGAPVPGGALMVLASPIDVDTIG 180 Query 205 YNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNIS 264 P P+G G+G+S Y +LLL++ G T ++VVS ++L P G R A+++ +S Sbjct 181 AEP-PDG-GSGVSVLYCSLLLVIGGVTAAVVVSLTAGALLRSAPVNHGRWQRLADRIRVS 238 Query 265 RFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIA 324 R + LLV+W ++ +LAL TS V L IA LGMP P VWL+G F + VGV SSSLIA Sbjct 239 RLQALLVEWTLLSLLALPTSAVCLGIAVALGMPAPQLLAVWLFGAFIVATVGVMSSSLIA 298 Query 325 VLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGN 384 LG+ G L+S+ +F+ LG+PSAGAT+PLEA P F WLA+FEP+ Q FLG RSLLY +G Sbjct 299 ALGTWGALISVFVFIFLGIPSAGATIPLEASPRFVAWLAEFEPVRQAFLGCRSLLYSDGA 358 Query 385 ADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRI 422 A L +++T+ ++GL I L G +T++ DR RI Sbjct 359 GGAELIRSVTVCALGLGIALSAGALVTYIRDRDRLPRI 396 >gi|326382783|ref|ZP_08204473.1| hypothetical protein SCNU_07588 [Gordonia neofelifaecis NRRL B-59395] gi|326198373|gb|EGD55557.1| hypothetical protein SCNU_07588 [Gordonia neofelifaecis NRRL B-59395] Length=454 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 181/435 (42%), Positives = 267/435 (62%), Gaps = 14/435 (3%) Query 1 MSQAQPRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPI 60 M + P+ ++ +A+R+ R W++P+ +MSA+AALYL IL+P NLR FPI Sbjct 1 MDEEHSEPSESTSEKG-RALRSWRLWLSPVILVTLVMSAMAALYLSSILDPNHNLRAFPI 59 Query 61 ALVNEDAG---PAGQQIVDG------LVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSAL 111 A+VNED G P G + G + S +D + + +S DE + +YG+ Sbjct 60 AVVNEDVGATDPTGAHVNFGDEMQTTVESKVDATQVRLENLSRDEMTSRMRDGKLYGAIT 119 Query 112 IPPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGE 171 +P F+++ +++ P+ RP +T+ TNPR+GTL +S+ + AL +N +G Sbjct 120 VPADFTAKTMALAQASLGPSGAQRPQVTVLTNPRSGTLGSSLVTSMSSAALAEMNKTLGA 179 Query 172 RLTAEV----AAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLL 227 RLT V A Q ++GAAA LA PID+ + + PLP TG GLSAFYYALL+LL Sbjct 180 RLTESVNGLAAQQRPPAQVSGAAAMVLAQPIDIVTVPFEPLPAHTGLGLSAFYYALLVLL 239 Query 228 AGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVY 287 AGFTG+++V+TLVD LG+V +E GP + ++R + LL+KW VMV +++ S Y Sbjct 240 AGFTGAMLVNTLVDGSLGFVASEIGPRMILRRSLGLNRLQALLIKWGVMVATSVVVSTAY 299 Query 288 LAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAG 347 L IA L MP+ +W Y AIIAVG+T+ S+++ G +G+L++M +FV LGLPSAG Sbjct 300 LGIASALDMPVEHRSTLWAYSTLAIIAVGITALSVVSAFGGIGMLINMFVFVFLGLPSAG 359 Query 348 ATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLG 407 AT+PLEA P F WL+ FEP+HQV+LGVR++LY + AGL+ A+ MT IGL +G+ +G Sbjct 360 ATIPLEAAPRAFAWLSSFEPLHQVYLGVRAILYFDARGSAGLTHAVIMTLIGLAVGVAMG 419 Query 408 GFITHLYDRSSFHRI 422 + Y+R R+ Sbjct 420 LGTAYYYERKGLPRL 434 >gi|54022545|ref|YP_116787.1| hypothetical protein nfa5780 [Nocardia farcinica IFM 10152] gi|54014053|dbj|BAD55423.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=452 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 185/432 (43%), Positives = 263/432 (61%), Gaps = 18/432 (4%) Query 8 PAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDA 67 P A P + +R + P+ L + L +YL + +P NL FPIALVN D Sbjct 14 PTARGPLQPPVTHPVLRIVVFPVVVLALLTTLLGYMYLAYVADPQENLHDFPIALVNLDV 73 Query 68 GPA------------GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPT 115 G G Q+ DG+ + K++ D+RV+ +EA++ + T VYG+ +IP Sbjct 74 GETLGTPEQPRQVNFGTQVADGIREAVPKDQIDLRVLGINEAQQQMRTGQVYGAIIIPGD 133 Query 116 FSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTA 175 FS +L G +V P ++P +T+ TNPR G A +I + + VN +VG++LT Sbjct 134 FSKRLGILGVGSVIPGEIEQPILTVQTNPRVGPYATAIVTRMADQMFPQVNEQVGKQLTE 193 Query 176 EVAAQ----TGG--VALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAG 229 +V AQ GG L+GA L SP+ + + PLP+GTG GL+AF+YALLLLL G Sbjct 194 QVQAQLTPPEGGQPTELSGATRLSLDSPLRLVVEEFRPLPSGTGQGLTAFFYALLLLLVG 253 Query 230 FTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLA 289 G++ + T+VD+ LG+VP E+GP Y ISRFRTLL+KW V ++A + +G++L Sbjct 254 VVGAMTIHTMVDAALGFVPTEYGPWYVHYPPTPISRFRTLLIKWGVFALMAAIVAGIFLL 313 Query 290 IAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGAT 349 +A L MP+ ++LY FA+IAVGVT S +A +GS GLLV++++FV+LGLPS+G T Sbjct 314 VAKALDMPLEHPLALYLYSAFAMIAVGVTGLSTLAAIGSAGLLVNLILFVVLGLPSSGGT 373 Query 350 VPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGF 409 VP+EA P +F WLA FEPMHQVFL VR++LY N + AGL++ L MT +GL+IGL+ G Sbjct 374 VPIEATPHYFGWLATFEPMHQVFLAVRAILYFNADFSAGLTRGLLMTILGLVIGLVFGVV 433 Query 410 ITHLYDRSSFHR 421 IT YD HR Sbjct 434 ITRYYDYKGLHR 445 >gi|343924054|ref|ZP_08763617.1| hypothetical protein GOALK_002_00080 [Gordonia alkanivorans NBRC 16433] gi|343765859|dbj|GAA10543.1| hypothetical protein GOALK_002_00080 [Gordonia alkanivorans NBRC 16433] Length=468 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 179/438 (41%), Positives = 264/438 (61%), Gaps = 15/438 (3%) Query 6 PRPAAPNPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNE 65 P P + + + RFW+AP+ L S +AALY+ +++P +L FPIALVNE Sbjct 20 PEVEEPTGRTIAGVLGSPRFWLAPLILVAVLFSLMAALYMSAVVDPQRHLHDFPIALVNE 79 Query 66 DAGPA-------------GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALI 112 D+G G Q+ DG++S N +R A L++ VYG +I Sbjct 80 DSGGEVTGADGKATEQNFGDQVADGIISSAADNGIVVRRTDRSTALGELNSGKVYGVVII 139 Query 113 PPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGER 172 F+++ G S V P + RPAI I N +G A+SI + T VN +VG++ Sbjct 140 GSNFTNRAVALGRSTVLPAQPTRPAIDIFINRGSGAFASSITTTFAEQVTTRVNAEVGQQ 199 Query 173 LTAEVAAQ--TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGF 230 LTA+V Q V GAA LASP+ V + PLP G GNGLSAFY LLL+LAGF Sbjct 200 LTAQVREQLDRNDVTFTGAAQLALASPVSVSVSEPTPLPQGAGNGLSAFYLTLLLVLAGF 259 Query 231 TGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAI 290 TG+++VS +VD MLG P E+GP Y+ E++ ISR+ TL KW +M +++++ S +++A+ Sbjct 260 TGAMMVSIVVDGMLGQTPIEYGPFYQLRERLAISRWATLAAKWTIMFLVSVVLSTLFIAV 319 Query 291 AHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATV 350 +G +P + +WL + AI AVGV++S+++AV G+ GLL +++ FV+ GLPS+G T+ Sbjct 320 GSWVGTSLPNAFVLWLISILAIFAVGVSASAMMAVFGNAGLLFNLVFFVVFGLPSSGGTL 379 Query 351 PLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFI 410 PLEA P FF W+A EPMH ++LGVRS+LY + + AGL++++ IGL++G+LLG Sbjct 380 PLEASPRFFEWIAAIEPMHVIYLGVRSVLYFDADLSAGLARSVVQCFIGLLLGVLLGLLG 439 Query 411 THLYDRSSFHRIPGAVEM 428 T YDR +HR PG + + Sbjct 440 TKYYDRKGWHRYPGGMTL 457 >gi|262203044|ref|YP_003274252.1| hypothetical protein Gbro_3154 [Gordonia bronchialis DSM 43247] gi|262086391|gb|ACY22359.1| membrane protein-like protein [Gordonia bronchialis DSM 43247] Length=470 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 175/438 (40%), Positives = 252/438 (58%), Gaps = 22/438 (5%) Query 13 PKRNVKAIRTV-------RFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNE 65 P+ +A RT+ RFW+ P A +AL +AALY+ + NP +L FPIALVNE Sbjct 23 PETEAEAGRTIAGVVGSPRFWLLPTALVVALFCLMAALYMAAVANPEEHLHDFPIALVNE 82 Query 66 DAGPA-------------GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALI 112 D G G Q+ DG++S K+ I A L T VYG +I Sbjct 83 DTGGQLDNGDGTKTPQNFGNQVADGIISSAAKSGIVIHRTDRTTALNELGTGKVYGVVII 142 Query 113 PPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGER 172 F+ + G + V + P+I I N +G A+++ R VN + G + Sbjct 143 ETGFTDKAISLGQATVLTNKPSSPSIGIYINRGSGAFASAVTTTFADRVRNQVNEEFGAQ 202 Query 173 LTAEVAAQ--TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGF 230 LT+ V AQ V GAA LA+P+ V PLP G GNGLSAFY+ LLL+LAGF Sbjct 203 LTSTVRAQLIKLDVPFTGAAQVALATPVQVSVIEPTPLPGGAGNGLSAFYFTLLLILAGF 262 Query 231 TGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAI 290 TG+++VS LVD MLG P EFGP Y+ ++ ISR+ TL KW +M++++ + S +++A+ Sbjct 263 TGAMMVSILVDGMLGQTPIEFGPFYQLRARLPISRWGTLAAKWTIMLLVSFVQSALFIAV 322 Query 291 AHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATV 350 +G +P + +W + V AI AVGV++SS++AV G+ GL+ +++ FV+ GLPS+G + Sbjct 323 CAAVGTSLPNAFALWAFSVLAIFAVGVSASSMMAVFGNPGLIFNLIFFVVFGLPSSGGPL 382 Query 351 PLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFI 410 PLEA P F W+A EPMH V+LGVRS+LY + + AGL++A + +GLI+G LLG Sbjct 383 PLEASPRIFAWIAAVEPMHVVYLGVRSILYFDADLSAGLARATIQSFVGLILGALLGWAG 442 Query 411 THLYDRSSFHRIPGAVEM 428 YDR +HR GA+ + Sbjct 443 AKYYDRKGWHRYAGAMTL 460 >gi|226359556|ref|YP_002777334.1| hypothetical protein ROP_01420 [Rhodococcus opacus B4] gi|226238041|dbj|BAH48389.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=356 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 157/329 (48%), Positives = 210/329 (64%), Gaps = 16/329 (4%) Query 20 IRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA--------- 70 +RT R MAP+ +MS LA LY+G +L+P +L HFPIALV++D G Sbjct 22 LRTPRLVMAPVVLVCIVMSLLAVLYMGAMLDPTKHLHHFPIALVDQDEGDTVPGSDPPVQ 81 Query 71 ---GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASA 127 G QI GL+ G+D K R + EAR LLD +YG+ IP F+ + ++ Sbjct 82 RKLGDQIAAGLIDGVDPEKIQFRRMGIVEARSLLDDGKIYGAIGIPSDFTKRTFVLAQAS 141 Query 128 VTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEV----AAQTGG 183 V P DRP IT+ TNPRAGT++A+I AL N +GE+LTA+V AA GG Sbjct 142 VVPGDVDRPVITVYTNPRAGTISANIVRAVGATALDEANRALGEQLTAQVNEQLAAGGGG 201 Query 184 VALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSM 243 L+GA+ LA PIDV++ A+NPLP GTG GL+AFYYALLL+LAGFTG+ +V+ LVD M Sbjct 202 TQLSGASRLVLADPIDVRTVAHNPLPFGTGFGLAAFYYALLLVLAGFTGANLVNALVDGM 261 Query 244 LGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQ 303 LG+ P E GP+Y + V ISRF TLLVKWA++V L ++ SG+YL I LG+P+ Sbjct 262 LGFTPTEVGPLYLYRAAVPISRFHTLLVKWAIVVALGMIVSGLYLGIGSALGLPVTDPLA 321 Query 304 VWLYGVFAIIAVGVTSSSLIAVLGSMGLL 332 +W YG FAI AVG+T+ S++A +G++GLL Sbjct 322 LWGYGAFAIAAVGITAVSVVAAIGNLGLL 350 >gi|328886573|emb|CCA59812.1| hypothetical protein SVEN_6526 [Streptomyces venezuelae ATCC 10712] Length=428 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/435 (38%), Positives = 243/435 (56%), Gaps = 25/435 (5%) Query 1 MSQAQP--RPAAPNPKRNVKAI-RTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRH 57 M+ A P P+ P+ A+ R + W+ P + + LA LY+GGILNP NL Sbjct 1 MTSAIPPNTPSTQGPQVRAAALARNPKLWLVPTVLSAIVAVGLALLYMGGILNPNENLHR 60 Query 58 FPIALVNEDAGPA--------GQQIVDGLV-SGLDKNKFDIRVVSPDEARRLLDTAAVYG 108 P+ALV+ED G G+QI D +V SG KN D R + EA+ L + V+G Sbjct 61 LPVALVDEDRGAPLPGQRENLGKQITDAIVASGPSKNAVDWRRLDRAEAQDALASGKVFG 120 Query 109 SALIPPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGK 168 + ++P F++ + A+ T T RP +T+ TNP G+L +S+ Q RA + Sbjct 121 ALVVPADFTASV----AALTTDRATVRPTLTVLTNPGLGSLGSSLTAQINQRAAHQASLT 176 Query 169 VGERLTAEVAAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLA 228 +G++L+A T + L P+ V + +P+ +G GL+AFYY LLL+L Sbjct 177 IGKQLSATTDLATTRLLLT--------DPVAVTTEVGHPIGRHSGLGLTAFYYTLLLVLG 228 Query 229 GFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSG-VY 287 GF G +V++ VD+ LGY +E GP + V ISR +TL++K + +++LT+ V Sbjct 229 GFIGGNLVNSGVDTALGYADSEIGPWHSRHPTVPISRTQTLILKMLMTAGISVLTTTLVM 288 Query 288 LAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAG 347 +A LGM +W++ A +AVG+ ++ A G +G LVSM +F+ L LPS+G Sbjct 289 VATIAILGMDASHLPMLWIFSYCATVAVGLGVQAINAAFGGIGQLVSMFVFIALALPSSG 348 Query 348 ATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLG 407 ATVPLEA P F+R+L FEPMHQ+ GVRS+LY + ADAGL++ M ++G+ + L G Sbjct 349 ATVPLEATPGFYRFLGVFEPMHQLSSGVRSILYFDARADAGLARGWIMIAVGVALALAFG 408 Query 408 GFITHLYDRSSFHRI 422 +TH YDR R+ Sbjct 409 LAMTHYYDRRGLRRL 423 >gi|254386341|ref|ZP_05001648.1| ABC-2 type transporter protein [Streptomyces sp. Mg1] gi|194345193|gb|EDX26159.1| ABC-2 type transporter protein [Streptomyces sp. Mg1] Length=441 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 159/417 (39%), Positives = 237/417 (57%), Gaps = 24/417 (5%) Query 18 KAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAG--PAGQQ-- 73 K +R + W+ P T L L+ LY+GGI+NP L PIA+VN+D G P GQQ Sbjct 32 KLLRRPQLWLVPTVLTGLLALLLSLLYMGGIVNPNWELHDLPIAVVNDDTGKPPPGQQEN 91 Query 74 ----IVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVT 129 + + + D R ++ +A+ LD+ VYG+ ++P F+ + S T Sbjct 92 LGAQVTAAIAADTGGGTADWRTLTRAQAQDQLDSGKVYGALVVPAGFTDSVTALTTSGAT 151 Query 130 PTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAGA 189 +P I + TNP G+L +S+AGQ T+A + +G++LTA QT + Sbjct 152 ----RQPTIVVLTNPGKGSLGSSLAGQITTKAAHQASQNIGKQLTAAAGEQT-----SPT 202 Query 190 AAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPA 249 L P+ V + +P+ +G GL+AFYY LLL+LAGF G V+S VD+ LGY Sbjct 203 VKTLLTDPVKVVTQVGHPIGANSGLGLTAFYYTLLLVLAGFMGGNVISNGVDTALGYADN 262 Query 250 EFGPVYRFAEQVNISRFRTLLVKWAVMVVLALL-TSGVYLAIAHGLGMP---IPLGWQVW 305 E GP + V I+R +TLL+K + + LL TS V +A LGM +PL +W Sbjct 263 EIGPWHTRRPTVPINRTQTLLLKMVMTAGITLLSTSLVLVACVAVLGMDASHLPL---LW 319 Query 306 LYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQF 365 +Y A +AVG+ ++ A G +G LVSM +F++LGLPS+GATVPL+AVP F+R+L+ F Sbjct 320 VYSYCAALAVGLGVQAINAAFGGIGQLVSMFVFIVLGLPSSGATVPLQAVPGFYRFLSHF 379 Query 366 EPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRI 422 EPM Q+ GVR++LY + DAGL+++ M +IG ++ L+ G +T YDR+ R+ Sbjct 380 EPMRQLSDGVRAILYFDARGDAGLTRSWIMIAIGTVLALVFGFAMTAYYDRAGHKRL 436 >gi|256394941|ref|YP_003116505.1| hypothetical protein Caci_5806 [Catenulispora acidiphila DSM 44928] gi|256361167|gb|ACU74664.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length=442 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/420 (40%), Positives = 238/420 (57%), Gaps = 33/420 (7%) Query 20 IRTVRFWMAP--IATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAG--PAGQ--- 72 +R + W+ P +AT +AL L+ LY+GGIL+P NL H PIALV+ D G P GQ Sbjct 29 VRRPKLWLIPAVLATLVALF--LSLLYMGGILDPNGNLHHLPIALVDADTGAPPPGQPQN 86 Query 73 ---QIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVT 129 Q+ +V+G +FD + V EA+ +L + VYG+ IP DF AS V Sbjct 87 LGAQVAQAVVTGAPTGQFDWKRVDRAEAQDMLASGKVYGAFEIP-------ADFTASVVA 139 Query 130 PTR---TDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVAL 186 T T RP IT+ TNP G+L +SIA Q A + +G++LTA A A Sbjct 140 LTTGQGTVRPTITVLTNPGLGSLGSSIASQVTQNAAHQASLSIGKQLTASPATS----AA 195 Query 187 AGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGY 246 A P+ V + +P+ +G GLSAFYYALLL+L+GF G ++ VD+ LGY Sbjct 196 DPTTRLLFADPVAVTTQIGHPIGRHSGLGLSAFYYALLLVLSGFIGGNLIHAGVDTALGY 255 Query 247 VPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLT-SGVYLAIAHGLGMP---IPLGW 302 +E GP + V I+R +TLL+K + +ALLT S V +A LGM IPL Sbjct 256 ADSEMGPWHTRRPTVPITRTQTLLLKMLMTAGIALLTVSMVIVACIVALGMDATHIPL-- 313 Query 303 QVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWL 362 +W++ A +A+G+ ++ A G +G LVSM +F+ L LPS+GATVPL+A P FR+L Sbjct 314 -LWIFSYCACLAIGLGVQAINAAFGGIGQLVSMFVFIALALPSSGATVPLQAAPPLFRFL 372 Query 363 AQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRI 422 FEPM Q+ GVR+++Y + DAGLS+A M ++G++ L+ G +T YDR R+ Sbjct 373 GTFEPMRQLAGGVRAIIYFDARGDAGLSRAWLMIAVGVVGALVFGFAMTRYYDRKGLRRL 432 >gi|311899700|dbj|BAJ32108.1| hypothetical protein KSE_63490 [Kitasatospora setae KM-6054] Length=425 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 153/424 (37%), Positives = 226/424 (54%), Gaps = 24/424 (5%) Query 13 PKRNVKAIRTV---RFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGP 69 P R A R + + W+ P+ + + L+ LY+G IL P +L H PIALV+ DAGP Sbjct 11 PDRTADAGRVLGRWKNWLTPVVLSALVALGLSLLYMGNILTPQKHLDHMPIALVDSDAGP 70 Query 70 A--------GQQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLR 121 G ++ + +V+G + D VS EA+R L + VYG+ ++P FS + Sbjct 71 PLPGQTRPLGAEVAEQVVAGSPPGEIDWHRVSRAEAQRQLSSGKVYGALVVPEDFSRAV- 129 Query 122 DFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQT 181 A+ T RP I + TNP G+L + IA Q +N ++ + + Q Sbjct 130 ---AALTTADAPARPRIQVLTNPGTGSLGSGIASQ--------INQAAAQKASLAIGGQL 178 Query 182 GGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVD 241 A G A LA P++V +P+ +GNGL AFY+ LLLLLAGF +V +D Sbjct 179 TAAAPTGTAKVFLADPVEVAVEVGHPIGEKSGNGLGAFYFTLLLLLAGFMTGNIVHAGLD 238 Query 242 SMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSG-VYLAIAHGLGMPIPL 300 +G+ AE GP + + ISR + LL K + ++L+++ V LA LGM P Sbjct 239 VSMGFADAEIGPFHLREPTLRISRTQVLLAKMGMAAGVSLVSASLVMLAAITILGMDAPH 298 Query 301 GWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFR 360 WQ+WLY A+ V + ++IA G++G LV+M +F+ LP++GATVPL A P F+R Sbjct 299 AWQLWLYSYCAVTTVSLGVLAIIAAFGNVGQLVAMFVFIAFDLPASGATVPLSASPGFYR 358 Query 361 WLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFH 420 +LA FEPM Q+ VRS+LY + A AGL + M +G+++ LL G +T YDR Sbjct 359 FLAVFEPMRQMVDAVRSILYFDAQAGAGLVRGWLMLPLGVVVALLFGFGMTRYYDRRGMR 418 Query 421 RIPG 424 PG Sbjct 419 FEPG 422 >gi|345003442|ref|YP_004806296.1| hypothetical protein SACTE_5972 [Streptomyces sp. SirexAA-E] gi|344319068|gb|AEN13756.1| conserved hypothetical protein [Streptomyces sp. SirexAA-E] Length=434 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/416 (38%), Positives = 233/416 (57%), Gaps = 21/416 (5%) Query 18 KAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAG--PAGQ--- 72 + +R + W+ P A + + L+ LY+GGIL P +L PIALV+ D G P G+ Sbjct 24 RVLRRWKLWIVPAALSALVALVLSLLYMGGILTPTGSLHRLPIALVDADTGAPPPGRGEN 83 Query 73 ---QIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVT 129 ++ +VS ++ R +S R L + V+G+ +IP F++ + T Sbjct 84 LGARVSAAVVSSTPDDQVRWRRMSQGRMRGELASGKVFGALVIPSGFTADVDRL----TT 139 Query 130 PTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAA--QTGGVALA 187 T+RPA+T+ TNP G+L +S+A + RA + +G LT AA Q G L Sbjct 140 GEATERPALTVLTNPGMGSLGSSLAQRITQRAANEASASIGRELTGSQAAAGQPPGFRLL 199 Query 188 GAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYV 247 LA P+ V+ A +P+ +G GLSAFYY LLL+LAGF + VV VD+ LGY Sbjct 200 ------LADPVAVRVQAGHPIGGHSGLGLSAFYYTLLLVLAGFISANVVHNGVDTSLGYA 253 Query 248 PAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHG-LGMPIPLGWQVWL 306 +E GP + V I R RTLLVK + L++LT+ + + G LGM P +W+ Sbjct 254 DSEIGPWHTRRPTVPIDRTRTLLVKMGMTAGLSVLTTTLIMVATIGVLGMDAPHLVLLWM 313 Query 307 YGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFE 366 + A + VG+ ++ A G +G LV+M +F+ L LPS+GATVPLEAVP F+R+L FE Sbjct 314 FSFCACLTVGLGVQAVNAAFGGIGQLVAMFVFIALALPSSGATVPLEAVPGFYRFLGTFE 373 Query 367 PMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRI 422 P+ QV GVR++LY + DAGL++ TM ++G ++ L+ G +T YDR HR+ Sbjct 374 PIRQVADGVRAILYFDARGDAGLARGWTMIAVGFVVALVFGFAMTRYYDRKGLHRM 429 >gi|158317967|ref|YP_001510475.1| hypothetical protein Franean1_6227 [Frankia sp. EAN1pec] gi|158113372|gb|ABW15569.1| conserved hypothetical protein [Frankia sp. EAN1pec] Length=465 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 160/453 (36%), Positives = 242/453 (54%), Gaps = 26/453 (5%) Query 13 PKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA-- 70 P R +R W+ P+ +++++ ALYL +NP+ ++R P+ +VN D G Sbjct 19 PVRVRDLLRQRAVWVLPLVLASVVVASMTALYLASAVNPLAHVRGLPVEVVNSDRGATLG 78 Query 71 ------GQQIVDGL-VSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRD- 122 G++I GL S + + V+ EA R ++ Y + +IPP F++ L Sbjct 79 TEHLDIGRRIETGLRASPAVSGRLRLEPVTRSEAERAMNRGRAYATVVIPPDFTASLLTQ 138 Query 123 -----FGASAVTPTRTDRP---AITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLT 174 G+SA P AI + TNPRAGTL S+A L A+ + + +LT Sbjct 139 AGLPPAGSSAAGPPSAGTAGAGAIQLLTNPRAGTLGVSLATGILQPAVATASRTISGQLT 198 Query 175 AEVAAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSI 234 A A A A LA+P+ V ++ ++P P + GLSAFY ALL L+ GF Sbjct 199 AVAGAGPHD----AATKAFLANPVTVTTSQFHPPPENSALGLSAFYLALLTLMCGFLAGT 254 Query 235 VVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHG- 293 ++ VD+ LGY +E GP + + ISR+RTLL+KWA+ VL + +G+ LA+A G Sbjct 255 ILHATVDAALGYGTSEVGPRWTQLQPKAISRWRTLLIKWAMAAVLTAVVTGLMLAVAAGA 314 Query 294 LGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLE 353 +GM P +WLY +V + L A LG+ G LV++L+FV GL SAG TVP+E Sbjct 315 VGMDAPHPLLLWLYAWLCSASVAAGTIVLFAALGTPGQLVAILLFVYAGLASAGGTVPVE 374 Query 354 AVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHL 413 A+P FFR L++ EP+ Q+ G R++LY ADAGL++ + +IGL+ L+ G I Sbjct 375 ALPDFFRLLSEAEPLRQILAGDRAILYFGAQADAGLTRGVVAAAIGLLCWLVAGTLIVRW 434 Query 414 YDRSSFHRIPGAVEMAIAVEHQAQ-YQARQSAR 445 YDR + HR+ E+ V+ Q Y+A++ A Sbjct 435 YDRRAMHRL--TPELLAYVDRAVQDYRAQERAE 465 >gi|254380837|ref|ZP_04996203.1| ABC-2 type transporter protein [Streptomyces sp. Mg1] gi|194339748|gb|EDX20714.1| ABC-2 type transporter protein [Streptomyces sp. Mg1] Length=445 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 160/440 (37%), Positives = 248/440 (57%), Gaps = 41/440 (9%) Query 6 PRPAAPNPKRNVKAIRTVRFWMAP--IATTLALMSALAALYLGGILNPMTNLRHFPIALV 63 P+P P+ +R R W+ IA ++++ AL LY+GG +NP NLR P+ALV Sbjct 2 PQPTPPS------VLRRPRLWIGTGLIAAVVSILFAL--LYVGGNVNPKGNLRDLPVALV 53 Query 64 NEDAGPA--------GQQIVDGLVSGLDKNK-FDIRVVSPDEARRLLDTAAVYGSALIPP 114 N D+G G+QIV G+ +K D +VVS +EA + L V+G+ +IP Sbjct 54 NADSGADAGGRHVNLGEQIVSGIQKAAKGDKSIDWQVVSREEADKRLGRGKVFGALVIPK 113 Query 115 TFSSQLRDFGASAVTPTRTDR---PAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGE 171 FS+ + G +A P + P +T+ TN AG++ +S++ Q +A + ++G+ Sbjct 114 DFSATVT--GLTAPQPPAQGKATPPTLTVLTNQAAGSIGSSMSSQAAQKAAHAASAQLGQ 171 Query 172 RLTAEVAAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFT 231 L + AQ L AA LA P+ V +PL + + GLSAFYYAL+L++ G Sbjct 172 ELLKQAGAQK--TPLPTAAQLKLADPVTVNVADGHPLGSRSAMGLSAFYYALVLVVCGML 229 Query 232 GSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALL--------T 283 G+ VV++ VD+ LGY+ ++GP+ + + SR RTL + A+M+ L+L+ T Sbjct 230 GANVVNSQVDTALGYLHTDYGPIRKREPVQHTSRVRTLAIGMALMLGLSLVMGTLVEVAT 289 Query 284 SGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGL 343 G+ A LG+ +WLY V I VG+ S +L A G+ G+L++ ++FV + + Sbjct 290 VGILDMDASHLGL-------LWLYSVATIAVVGIGSLALFAAFGTPGMLLATIVFVAMAV 342 Query 344 PSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIG 403 PS+GATVP++A+P FFR LA+FEP+ Q+ G+RSLLY ADAGL++A + + Sbjct 343 PSSGATVPVQALPGFFRALAEFEPLRQLTEGLRSLLYYGAQADAGLARAWASMGVAFVAA 402 Query 404 LLLGGFITHLYDRSSFHRIP 423 L+ G +T +YDR HRIP Sbjct 403 LVFGFAVTRVYDRRGLHRIP 422 >gi|302538523|ref|ZP_07290865.1| ABC-2 type transporter [Streptomyces sp. C] gi|302447418|gb|EFL19234.1| ABC-2 type transporter [Streptomyces sp. C] Length=436 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/426 (37%), Positives = 244/426 (58%), Gaps = 35/426 (8%) Query 20 IRTVRFWMAP--IATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA------- 70 +R + W+ IA ++++ AL LY+GG +NP NLR P+ALVN DAG Sbjct 2 LRRPQLWIGTGLIAAVVSMLFAL--LYVGGNVNPRGNLRDLPVALVNADAGADAGGRRVN 59 Query 71 -GQQIVDGLVSGLDKNK-FDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAV 128 G+Q+V G+ + +K D ++VS +EA L + V+G+ +IP FS+ + A Sbjct 60 LGEQVVSGIEKAAEGDKSIDWQLVSREEADERLGSGKVFGALVIPREFSATVTALAAP-- 117 Query 129 TPTRTDRPA---ITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVA 185 P +PA IT+ TN AG++ +S++ Q +A + ++G+ L + AAQ Sbjct 118 QPPAQGKPAPPVITVLTNQSAGSIGSSMSSQAAQKAAHAASAQIGQELLKQAAAQK--TP 175 Query 186 LAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLG 245 L AA LA P+ V +P+ + + GLSAFYYAL+L++ G G+ +V++ +D+ LG Sbjct 176 LPTAAQLKLADPVTVTVADGHPVGSRSAMGLSAFYYALVLVVCGMLGANLVNSQIDTALG 235 Query 246 YVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALL--------TSGVYLAIAHGLGMP 297 Y+ ++GPV + + SR RTL V A+M+ ++++ T G+ A LG+ Sbjct 236 YLHTDYGPVRKREPVQHTSRVRTLAVGIALMLGMSVIMGTLVEVATVGILDMDASHLGL- 294 Query 298 IPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPA 357 +WLY V I VG+ +L A G+ G+L++ ++F+ + +PS+GATVPL+A+P Sbjct 295 ------LWLYSVATIAVVGIGGLALFAAFGTPGMLLATIVFIAMAVPSSGATVPLQALPG 348 Query 358 FFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRS 417 FFR LA+FEP+ Q+ G+RS+L+ ADAGL++A I L+ LL G +T LYDR Sbjct 349 FFRGLAEFEPLRQITEGLRSILFYGAQADAGLTRAWAAMGIALVAALLFGFAVTRLYDRR 408 Query 418 SFHRIP 423 HRIP Sbjct 409 GLHRIP 414 >gi|184201766|ref|YP_001855973.1| hypothetical protein KRH_21200 [Kocuria rhizophila DC2201] gi|183581996|dbj|BAG30467.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length=524 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/460 (32%), Positives = 231/460 (51%), Gaps = 68/460 (14%) Query 25 FWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA-------------G 71 FW+ P+ +A+ ALYLGG+ +P + + FPIA++N+D G G Sbjct 24 FWLLPMLAIIAVGVIGTALYLGGLSSPDKHFKEFPIAVINQDKGAEVPQADGKATQENLG 83 Query 72 QQIVDGLVS-GLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVTP 130 + +V +++K D+R +S DEA+ LD +Y + ++P +FS ++T Sbjct 84 KDLVQKFADKAAEEDKIDLRQLSMDEAKEQLDRGELYAAVVVPESFSEDTVSLIEGSLTR 143 Query 131 TRTDRPAITISTNPRAGTLAASIA---------------GQTLTRALTVVNGKV------ 169 RP +T+ T+P+AG+L +A G+ LT ++ + Sbjct 144 GNAARPEVTLYTDPQAGSLGTRLATGAVEPGVREASKKLGEQLTESVAPAEDRAYNQVLQ 203 Query 170 ---------------------------------GERLTAEVAAQTGGVALAGAAAAGLAS 196 + +AE A+ ++ A L Sbjct 204 QLQQSQQQQSQQLQRQAAQGGPEVQQFAQQVQKSQEGSAEQIAKELSPTVSSVAKDTLKD 263 Query 197 PIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYR 256 P+++ S AYN LP GT G+SAFYY++LLL+ GF+GS+ ++ L+D+ +G P E GP ++ Sbjct 264 PVNMVSKAYNDLPEGTALGMSAFYYSILLLVVGFSGSVALNLLMDARMGMAPFEMGPFFK 323 Query 257 FAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVG 316 E+ + R L+KW VV A S + + +A +GMP+P G+ V+L G A+ V Sbjct 324 DYERAVLPRPVGFLMKWLTFVVAAAPASALMMWVASAVGMPVPHGFLVFLLGWLAMSTVS 383 Query 317 VTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVR 376 +LI+V GS+G+L+ ++ V +GLPSAGA VPLEAVP FFR +A EP+H +F VR Sbjct 384 AIVLALISVGGSVGMLLCLVYLVFMGLPSAGAVVPLEAVPGFFRAIAPIEPLHHIFTSVR 443 Query 377 SLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDR 416 S L+ + +AGL+ L + L + LL+G YD+ Sbjct 444 SALFFDAIPEAGLTTGLIGLFVMLAVALLVGVLGGWGYDK 483 >gi|291455578|ref|ZP_06594968.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291358527|gb|EFE85429.1| conserved hypothetical protein [Streptomyces albus J1074] Length=427 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 150/412 (37%), Positives = 222/412 (54%), Gaps = 18/412 (4%) Query 20 IRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA--------G 71 +R + W+ P A + + L+ LY+GGIL P +L P+ALV+ D G G Sbjct 20 LRRRKLWVFPAALSGLVALLLSLLYMGGILTPDGSLHRLPVALVDADDGRPLPGERQNLG 79 Query 72 QQIVDGLVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVTPT 131 Q +VS + R ++ EA+ L VYG+ ++PP F+ +R T Sbjct 80 AQFSSAIVSSSPGDDVRWRRLTRAEAQDQLAAGKVYGALVVPPGFTDSVRALAEG----T 135 Query 132 RTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAGAAA 191 RP +T+ TNP G+L +++A Q RA + ++G RLT ++ G A Sbjct 136 AEKRPTLTVLTNPGMGSLGSALADQISERAAAEASQELGRRLT-----ESAGGDATPAQR 190 Query 192 AGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEF 251 L P+ V + +P+ + +G GLSAFYY LLL+LAGF ++ VD+ LGY +E Sbjct 191 LLLRDPVAVTTEVGHPIGSRSGLGLSAFYYTLLLVLAGFLAGNIIHNGVDTGLGYADSEL 250 Query 252 GPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHG-LGMPIPLGWQVWLYGVF 310 GP + V +SR TL+VK + L +LT+ + + G LGM P + ++ Sbjct 251 GPWHSRRPTVPVSRTSTLVVKMGMTAGLTVLTTALIMVATIGILGMDAPHLPLLAVFSYC 310 Query 311 AIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQ 370 A +AVG+ ++ A G +G LV+M +F+ L LPS+GATVPLEAVP F+R L FEPM Q Sbjct 311 ASLAVGLGVQAINAAFGGIGQLVAMFVFIALALPSSGATVPLEAVPEFYRVLGIFEPMRQ 370 Query 371 VFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRI 422 + GVRS+LY + ADAGL++A M +IG+ L G + YDR HR+ Sbjct 371 LASGVRSILYFDARADAGLARAWIMIAIGVAAALAFGFAMARYYDRKGLHRM 422 >gi|302546783|ref|ZP_07299125.1| YhgE/Pip domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302464401|gb|EFL27494.1| YhgE/Pip domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length=432 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 148/419 (36%), Positives = 232/419 (56%), Gaps = 19/419 (4%) Query 18 KAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA--GQQIV 75 + +R W+ T L Y+G ++P+ +++ P+ LVN D G A G+Q+ Sbjct 8 RVLRAKPLWIVNGVITGVLALLFTVFYVGANIDPVDHMKKLPVGLVNVDTGAAVGGKQVN 67 Query 76 DG--LVSGLDK-----NKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAV 128 G + + K +K D RV+ EA+ L +YG+ ++P F+S + +A Sbjct 68 LGARITESIKKSTTSGDKIDWRVMDEKEAKEELGEGKLYGALVVPDNFTSSVTALTGTAA 127 Query 129 TPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAG 188 T + RP + + TN AG+L +S+A T A + +VG+ LTA+ A G L Sbjct 128 TKSPV-RPTLKVLTNQSAGSLGSSLARTASTAAAESASLQVGKELTAQNGA--GQAKLPA 184 Query 189 AAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVP 248 AA LA P V +PL + +G GL+AFYYAL+L++ G + V+S D LGY Sbjct 185 AARVLLADPAAVTVEDGHPLHSHSGLGLTAFYYALVLVVCGMLSANVISGQADHALGYTH 244 Query 249 AEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHG-LGMP---IPLGWQV 304 + GP+ + +R +TL + +M+ L+LL + + A G +GM +PL + Sbjct 245 NDMGPLRLHRPLIRATRVQTLAISSTLMIGLSLLMGTLVMVGAVGIMGMDASHLPL---L 301 Query 305 WLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQ 364 WLY V AI G+ + +L+AV G+ G+LV L+F+ + +P+AGAT P+EA+P F+R+LA+ Sbjct 302 WLYSVCAIAVSGIGALALLAVFGTPGMLVVTLVFIGMAVPTAGATTPIEALPGFYRFLAE 361 Query 365 FEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRIP 423 FEP+ Q+ GVRS+LY + ADAGL++ M + GL++ L G +T YDR HRIP Sbjct 362 FEPLRQIADGVRSILYYDAQADAGLARGWVMMAAGLVVAALFGFGVTGWYDRKGLHRIP 420 >gi|29826684|ref|NP_821318.1| hypothetical protein SAV_144 [Streptomyces avermitilis MA-4680] gi|29603780|dbj|BAC67853.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length=432 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 148/423 (35%), Positives = 233/423 (56%), Gaps = 19/423 (4%) Query 18 KAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPA--GQQIV 75 + +R W+A T L Y+G ++P+ ++++ P+ LVN D G A G+Q+ Sbjct 8 RVLRAKPLWIANGVITGVLALLFTVFYVGANIDPVDHMKNLPVGLVNADKGAAVGGEQVN 67 Query 76 DG--LVSGLDKN-----KFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAV 128 G + + K+ K D +V+ E + L +YG+ ++P F+S +A Sbjct 68 LGARITESIKKSTASGGKIDWKVMDEKEMKEELGKGKLYGALVVPADFTSATTALTGAAT 127 Query 129 TPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAG 188 T T RP +T+ TN AG++ +S+A T+A + +VG+ LT + TG L Sbjct 128 TGVPT-RPTLTVLTNQSAGSVGSSLARTATTQAAENASLQVGKELTPQ--GGTGQAKLPA 184 Query 189 AAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVP 248 AA LA P V +PL + +G GL+AFYYAL+L++ G + V+S VD LGY Sbjct 185 AARVLLADPAAVAVEDGHPLDSHSGLGLTAFYYALVLVVVGMLSANVISGQVDHALGYTH 244 Query 249 AEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGL-GMP---IPLGWQV 304 + GP+ + +R +TL + +M L+LL + + A GL GM +PL + Sbjct 245 NDMGPLRLHRPLIRATRVQTLAISSTLMAGLSLLMGTLVMVGAIGLMGMDAAHLPL---L 301 Query 305 WLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQ 364 WL+ V AI G+ + +L+AV G+ G+LV L+F+ + +P+AGAT PL+A+P F+R+LA+ Sbjct 302 WLFSVCAIAVSGIGALTLLAVFGTPGMLVVTLVFIGMAVPTAGATTPLQALPGFYRFLAE 361 Query 365 FEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHRIPG 424 FEP+ Q+ G+RS+LY + ADAGL++ M ++GL L G +T YDR HRIP Sbjct 362 FEPLRQITGGIRSILYYDAQADAGLTRGWVMMAVGLTAAALFGFGMTGWYDRKGLHRIPA 421 Query 425 AVE 427 E Sbjct 422 ETE 424 >gi|297202962|ref|ZP_06920359.1| ABC-2 type transporter [Streptomyces sviceus ATCC 29083] gi|197711955|gb|EDY55989.1| ABC-2 type transporter [Streptomyces sviceus ATCC 29083] Length=450 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 144/425 (34%), Positives = 227/425 (54%), Gaps = 19/425 (4%) Query 12 NPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAGP-- 69 P + +R WMA T L A Y+G ++P +L P+ LV+ D G Sbjct 20 TPVPPFRVLRAKPLWMANGVITGVLALLFAVFYVGANIDPADHLTKLPVGLVDADKGATV 79 Query 70 AGQQIVDG--LVSGLDKN-----KFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRD 122 G+Q+ G + + K+ + D +V+ E + L ++G+ ++P F+S Sbjct 80 GGKQVDLGARITESIKKSTASGGRIDWKVMDEREMKEELGKGKLFGALVVPADFTSSATA 139 Query 123 FGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTG 182 +A T T RP +T+ TN AG++ + +A TRA + ++G+ LTA++ T Sbjct 140 LTGTAPTATPA-RPTLTVLTNQSAGSIGSGLARTATTRAAENASLQLGKELTAQIG--TA 196 Query 183 GVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDS 242 L AA LA P V +PL + +G GL+AFYYAL L++ G + V+S VD Sbjct 197 QARLPAAARVLLADPAAVTVEDGHPLGSHSGLGLTAFYYALTLVVVGMLAANVISGQVDH 256 Query 243 MLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHG-LGMP---I 298 LGY + GP + +R +TL + +M L+LL + +A A G +GM + Sbjct 257 ALGYTHNDMGPRRLHRPLIRATRVQTLAISGTLMAGLSLLMGTLVMAGAVGIMGMDASHL 316 Query 299 PLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAF 358 PL +WLY V A+ G+ + +L+AV G+ G+L+ L+F+ + +P++GAT PLEA+P F Sbjct 317 PL---LWLYSVCAVAVTGIGALTLLAVFGTPGMLLVTLVFIGMAVPTSGATTPLEALPGF 373 Query 359 FRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSS 418 +R+LA+FEP+ Q+ GVRS+LY + DAGL++ M + GL+ L G + YDR Sbjct 374 YRFLAEFEPLRQITGGVRSILYYDAQGDAGLTRGWVMMAAGLVAAALFGFGVLGWYDRKG 433 Query 419 FHRIP 423 HRIP Sbjct 434 LHRIP 438 >gi|319948233|ref|ZP_08022389.1| hypothetical membrane protein [Dietzia cinnamea P4] gi|319438108|gb|EFV93072.1| hypothetical membrane protein [Dietzia cinnamea P4] Length=480 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 135/414 (33%), Positives = 221/414 (54%), Gaps = 25/414 (6%) Query 30 IATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDA--------GP----AGQQIVDG 77 +A L LA +Y+GG +P + RH P+A+VNED GP G +I G Sbjct 23 VAVVCGLFFLLAFMYIGGTADPQAHARHIPVAVVNEDQAATLETPIGPRRIDVGTRITAG 82 Query 78 LVSGLDKNKFDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVTPTRT---- 133 L+ D + +V P A L +G+ IP S ++ +A T + Sbjct 83 LIQNNDWGTVRLHMVDPATAEAGLRDGTYFGALRIPADLSRRVVGLVEAAATESGRSGPV 142 Query 134 -DRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLT--AEVAAQTGGVALAGAA 190 DR + + +PR ++ + R +VG L A++ A+ G A+ AA Sbjct 143 PDRARVELEYSPRVSIVSGQVMNTMADRMRESFRERVGPGLVEDAQLLAEAEGGAVDAAA 202 Query 191 AAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAE 250 L PI V A+NPLP G N +YAL+++LAGFTG++++S L+D+ LG++P E Sbjct 203 ELALGDPIRVDVAAWNPLPAGVSNASLPMFYALVVILAGFTGAMIISALLDARLGFIPLE 262 Query 251 FGPVYRFAEQVNIS---RFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLY 307 GP FA V+++ R +TL+ KWAV +V A L S + L +A LG+ W ++ + Sbjct 263 IGP---FAHHVHVAPFGRVQTLVRKWAVTLVTAPLVSALCLWVADILGISGYDPWHMFWF 319 Query 308 GVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEP 367 I+AVGV + ++IA +G+ GLLV++++FV+LG+P++G P + +P F + +P Sbjct 320 SNLVIVAVGVCAHTIIAAIGNAGLLVNLVLFVVLGIPTSGGATPTQMLPPVFVAIGDLQP 379 Query 368 MHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLLLGGFITHLYDRSSFHR 421 MHQ +LG+RS+++ + +AGL A+ + + GL++G +T +Y+R R Sbjct 380 MHQAYLGLRSIMFFDSGWEAGLGHAVWVLGAWTVGGLVMGIAVTLVYERMGMRR 433 >gi|111020087|ref|YP_703059.1| hypothetical protein RHA1_ro03098 [Rhodococcus jostii RHA1] gi|110819617|gb|ABG94901.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=457 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 146/448 (33%), Positives = 227/448 (51%), Gaps = 41/448 (9%) Query 4 AQPRPAAPNPKRNVKAIR--------TVRF------WMAPIATTLALMSALAALYLGGIL 49 ++P PAA K V + T RF W+A + + L L A+YLGG + Sbjct 2 SEPSPAARTTKHAVPEVSPSVVAEPVTRRFLWHPRTWIASVTILILLGLTLPAVYLGGTI 61 Query 50 NPMTNLRHFPIALVNED-------AGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRLLD 102 +P +L+ P+ALV E A PA + DG+ +D NK + +S DEA + Sbjct 62 DPQGDLKDLPVALVVEPQTVQLGAASPA-DAVADGIEQHVDDNKITLMAMSTDEADHQMR 120 Query 103 TAAVYGSALIPPTFSSQLRDFGA-SAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTRA 161 + G IP F++Q+ GA + P P + + T R+G + A + + Sbjct 121 NGHIVGIIRIPNDFNAQV---GALTRPGPGAPTHPVVHLDTTSRSGAMTAGLFTGNVGPV 177 Query 162 LTVVNGKVGERLTAEVAAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYY 221 + V +G +L A TGG + A A LA+P + +PLP+ TG G S FY Sbjct 178 VEGVRTALGRQLMA-----TGGAPVDTATATALATPFAIAIAPLDPLPSHTGLGTSVFYL 232 Query 222 ALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLAL 281 A++L++ F G+ V L+D+++G++P E GP R ++SR R L++KW VM+ Sbjct 233 AIVLIIVAFIGASAVHPLIDTVIGFIPQETGPRVRRNPYRHLSRTRALILKWLVMLAATP 292 Query 282 LTSGVYLAIA-HGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVI 340 T+ L +A LGMP+ +WL+ + AVGV ++ A+ GS G LV+ FV Sbjct 293 PTTAAILLVAGPWLGMPLVSPLTLWLFATATVAAVGVGGLTVFALFGSFGPLVNTFFFVA 352 Query 341 LGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQA----LTMT 396 L + S+G +PL+A P FFR +A FEPM V G+RS+LY + +G+ A L + Sbjct 353 LAMTSSGGAIPLQATPDFFRAIAPFEPMRAVVNGLRSILYFDSTPGSGMEPAWWYLLVLA 412 Query 397 SIGLIIGLLLGGFITHLYDR-SSFHRIP 423 +I + GL+ T ++DR +F R+P Sbjct 413 AISIATGLI----ATRVFDRFPAFTRLP 436 >gi|326330243|ref|ZP_08196554.1| putative Tat (twin-arginine translocation) pathway signal sequence [Nocardioidaceae bacterium Broad-1] gi|325952056|gb|EGD44085.1| putative Tat (twin-arginine translocation) pathway signal sequence [Nocardioidaceae bacterium Broad-1] Length=434 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 141/386 (37%), Positives = 200/386 (52%), Gaps = 15/386 (3%) Query 12 NPKRNVKAIRTVRFWMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNE-DAGPA 70 N +R + A T W+API + L + L A+YL G ++P NLR+ P+ LV E G A Sbjct 2 NARRPLAARGT---WLAPILLIVCLAAVLPAVYLAGTVDPRGNLRNLPVGLVIEPQTGMA 58 Query 71 GQQIVDGLVSGLDKNK---FDIRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASA 127 + + +G++ + +S DE + V G+ +IP F + A Sbjct 59 EVGAAESVATGIEDGAGVALAVTRMSHDELATAIREDRVAGAVVIPADFDHSIASLLPGA 118 Query 128 VTPTRTDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALA 187 V+ T P +TI TN G L+ + TLT L +G++L A A Sbjct 119 VS---TTVPTVTILTNAGDGGLSNGLLVGTLTPVLHRAADALGDQLLDRDTAT----APP 171 Query 188 GAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYV 247 A A L+ P D+ S Y PLP+ G G SAFYY+L+L+L GF G+ +V LVDS LG++ Sbjct 172 AANVALLSQPFDIVSRPYEPLPDHAGMGTSAFYYSLILVLLGFIGASLVGPLVDSALGFI 231 Query 248 PAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLY 307 P+E GP+ ISR T L K A++V A L + +A LG+ P +WLY Sbjct 232 PSEIGPLVARRPYTAISRRSTFLGKTAILVTAAPLAAAAVQLVAALLGVTAPDWITLWLY 291 Query 308 GVFAIIAVGVTSSSLIAVLG-SMGLLVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFE 366 I A+G ++ ++ A LG G LV+ L FV L + S+G TVPLEA PAFF W ++ Sbjct 292 STAVIAAIGTSALAVFAALGPGFGALVNTLFFVALAMVSSGGTVPLEATPAFFGWFSEIS 351 Query 367 PMHQVFLGVRSLLYLNGNADAGLSQA 392 P + G RSLLY +G+A AGL A Sbjct 352 PFRHIIDGTRSLLYFDGDATAGLRSA 377 >gi|288919491|ref|ZP_06413822.1| membrane protein-like protein [Frankia sp. EUN1f] gi|288349094|gb|EFC83340.1| membrane protein-like protein [Frankia sp. EUN1f] Length=225 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/153 (38%), Positives = 92/153 (61%), Gaps = 1/153 (0%) Query 227 LAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSGV 286 + GF ++ + VD+ LGY +E GP + + ISR+RTLL+KW + L + +G+ Sbjct 1 MCGFLVGTLLHSTVDAALGYGTSEVGPRWTQLQPKAISRWRTLLIKWVMAAALTAVVTGL 60 Query 287 YLAIAHG-LGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPS 345 +A+ G +GM P +W++ +V + L A LG+ G LV++L+FV GL S Sbjct 61 MIAVGAGAVGMDAPHPLLLWVFSWLCAASVAAGTIVLFAALGTPGQLVALLLFVYAGLAS 120 Query 346 AGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSL 378 AG TVP+EA+P FFR L++ EP+ Q+ G R++ Sbjct 121 AGGTVPIEALPGFFRLLSEAEPLRQILAGDRAI 153 >gi|226359555|ref|YP_002777333.1| hypothetical protein ROP_01410 [Rhodococcus opacus B4] gi|226238040|dbj|BAH48388.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=99 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/85 (53%), Positives = 62/85 (73%), Gaps = 0/85 (0%) Query 337 IFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMT 396 +FV+LGLPS+G T+PLEA P+ +RWL FEPMHQ++ GVR++++ + AGL A+ MT Sbjct 1 MFVMLGLPSSGGTIPLEATPSLYRWLGGFEPMHQIYRGVRAIIFFGASGAAGLIHAVWMT 60 Query 397 SIGLIIGLLLGGFITHLYDRSSFHR 421 GL+IGL++G IT YDR HR Sbjct 61 FAGLVIGLVVGAVITRFYDRKGLHR 85 >gi|295705827|ref|YP_003598902.1| ABC transporter family protein [Bacillus megaterium DSM 319] gi|294803486|gb|ADF40552.1| ABC-2 type transporter family protein [Bacillus megaterium DSM 319] Length=432 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 103/410 (26%), Positives = 181/410 (45%), Gaps = 41/410 (10%) Query 59 PIALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSPDEARRL----LDTAAVYGSALIPP 114 P+ +VNED G G I+ L+ + N F V D++R+ + YG+ +IP Sbjct 5 PLIVVNEDKGKVGDAILLNLIEKQNGNSFKWEV---DKSRKQAFTDIRNNKAYGALIIPS 61 Query 115 TFSSQLRDFGASAVTPTRTDRPA-ITISTNPRAGTLAASIAGQTL-TRALTVVNGKVGER 172 +S L + ++ D+PA + I N G A+ IA TL T ALT G + + Sbjct 62 DYSKNLGRVHDTLISGLTNDKPADLEILLNEGIGQTASMIASNTLQTVALTASKG-ISSQ 120 Query 173 LTAEVAAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNGLSAFYYALLLLLAGFTG 232 L E+ + G+ +A A+ L +P+ V S LP G++ F AL+ + G G Sbjct 121 LKNELLQK--GMKVAPENASLLENPVQVVSKNVLRLPVNLNKGMTPFVMALISSITGMLG 178 Query 233 SIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRT------LLVKWAVMVVLALLTSGV 286 + ++ GY+ G + + ++ S T +++ + V + + L G+ Sbjct 179 ANMIH-------GYLLRSNGILKKRGSALSESEVLTSEIIFGIILTFCVSIFIQLGVFGI 231 Query 287 YLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPSA 346 + AH + W ++L+ F+ + + ++ LG G+LV M +G+ S+ Sbjct 232 F-GSAHASNI-----WTIFLFTFFSCTTMFLLFKTIAVFLGGWGMLV-MFPVNFMGIFSS 284 Query 347 GATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGL-L 405 G PL +P R + P + G+R+LLY +G +AGL AL SI ++ L + Sbjct 285 GGAFPLSTLPTVHRLFSYILPTRYIVDGIRALLYYDGRLEAGLGPALLALSIYFVLTLAI 344 Query 406 LGGFI--THLYDRSSFHRIPGAVEMAIAVE------HQAQYQARQSARES 447 L FI T Y + +E+ + E Q ++R + + Sbjct 345 LIVFINLTKKYKEAVVDESGKKIEVEVGNEIPDEPPTHEQRKSRHTGEKD 394 >gi|260905229|ref|ZP_05913551.1| hypothetical protein BlinB_07845 [Brevibacterium linens BL2] Length=832 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/318 (23%), Positives = 137/318 (44%), Gaps = 51/318 (16%) Query 129 TPTRTDRPAITISTNPRAGTLAASIAG--------QTLTRALTVVNGKVGERLTAEVAAQ 180 +P+ D P + ++ +A + ++ G T+ A T +A V + Sbjct 90 SPSANDMPVVVAGSDSKAADIKFALDGAEPDALDVDTVEDAHTAREMVYDREASAAVVIE 149 Query 181 TGGVALAGAAAAGLASP---------------IDVKSTAYNPLPNGTGNGLSAFYYALLL 225 L A AG+ +DV + LP+ +GL A + + Sbjct 150 GDKATLYTAGGAGVQQQTTVTGLVMPALQEEGLDVATEDIASLPDNDPSGLGAMFLMTAI 209 Query 226 LLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAVMVVLALLTSG 285 ++AG+ V+ + +L + R +L WA ++ + T Sbjct 210 VMAGYLPFSVLRSNSPELLKF-----------------KRIVPILGAWAAVIAGLVWTVV 252 Query 286 VYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGLLVSMLIFVILGLPS 345 + + +P+ WL GVFAI + + + ++G++G++V + ++LG+PS Sbjct 253 CPILDIVDVKDTVPVLGIAWL-GVFAISCMQLF---ITRIVGALGVIVGIFFLMVLGMPS 308 Query 346 AGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGNADAGLSQALTMTSIGLIIGLL 405 + + P+ +PAF+R+ + PM + +RS+LY +G AG+++ L + +IG ++GLL Sbjct 309 SNLSYPVYTMPAFYRFTHEILPMPAIGEALRSVLYFDG---AGVTEHLLVLAIGAVVGLL 365 Query 406 LGGFITHLYDRSSFHRIP 423 L T YD S R P Sbjct 366 L----TKAYDFISHRRNP 379 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 81/353 (23%), Positives = 136/353 (39%), Gaps = 77/353 (21%) Query 34 LALMSALAALYLGGILNPMTNLRHFPIALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVS 93 LA+++ + LG + +P + P+ +V A I D L + KN FD S Sbjct 412 LAMVTMMLTFMLGAMGSPTP--KDMPVTVVGSSTEQAKDTIAD-LEKSMGKNMFDFTATS 468 Query 94 PDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASI 153 E R + RD A+ V PT+ N G L A+ Sbjct 469 DKEEARA----------------QVEDRDEVAALVLPTQK---------NAEFG-LIANE 502 Query 154 AGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAGAAAAGLASPIDVKSTAYNPLPNGTG 213 AG A VVN R+ +VA+ +DV + A PLP+ Sbjct 503 AGNN--SAYQVVN-----RIFDQVASAQD-------------MELDVDNVA--PLPDRDK 540 Query 214 NGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKW 273 NG+ Y A+ +LAGF M+ V A P R + R L + Sbjct 541 NGVVVMYIAMGWILAGF------------MVVIVGANANPWSR-----PLKRMIPLTAVY 583 Query 274 A--VMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLGSMGL 331 A + +V+AL+ + A+ Q+W G+ AI + + + ++G + + Sbjct 584 APFMSLVVALIAGPITGAVDGHFA-------QLWGAGIIAIFCIAMFAMVFERLIGMLAI 636 Query 332 LVSMLIFVILGLPSAGATVPLEAVPAFFRWLAQFEPMHQVFLGVRSLLYLNGN 384 + + + G+P++ + +P+FF L F PM +RS++Y + + Sbjct 637 IPVIGTLMFAGMPASNGAISEYMIPSFFTTLHDFLPMAAAVETIRSIIYFDSD 689 >gi|333996802|ref|YP_004529414.1| phage infection protein [Treponema primitia ZAS-2] gi|333740488|gb|AEF85978.1| phage infection protein [Treponema primitia ZAS-2] Length=391 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 84/322 (27%), Positives = 137/322 (43%), Gaps = 59/322 (18%) Query 43 LYLGGILNPMTNLRHFPIALVNEDAGPAGQQIVDGLVSGLDKNKFDIRVVSP--DEARRL 100 +L NP N+ + P+A VNED+G G + L +N D++ P A Sbjct 37 FWLQAFWNPYANIGNLPVAFVNEDSGVYGAGLEQQL-----RNSIDVKWSFPGRKSADSG 91 Query 101 LDTAAVYGSALIPPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAGTLAASIAGQTLTR 160 L Y +IP FS + +N R + + G+ Sbjct 92 LKDKTYYAVFVIPENFSQSI---------------------SNVRTANIETYVNGKNNFM 130 Query 161 ALTVVNGKVGERLTAEVAAQ-----TGGVALAGAAAAGLASPIDVKSTAYNPLPNGTGNG 215 A T++ ++ +RL +++AQ TG + AA A+PI+ K NP+ N TG G Sbjct 131 A-TLLASQIEKRLEEQISAQIVQNVTGKLPGGDMVAAFAANPIEGKQIDINPVAN-TGTG 188 Query 216 LSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFRTLLVKWAV 275 + ++ +L L + S+V+ VD P + VN++ R LL A Sbjct 189 FAPYFSSLALWIGALLISLVLGRRVDKSKLLSP----------DGVNLTLGRFLLFACAG 238 Query 276 MVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTS----SSLIAVLGSMGL 331 +V LLT AI + L + + G L + A+ +TS S+LI++ G G Sbjct 239 LVQAVLLT-----AIIYALRIDVQSG----LLTLAALAVSALTSIALVSTLISIFGMFGQ 289 Query 332 LVSMLIFVILGLPSAGATVPLE 353 ++SM + +I L ++G T P E Sbjct 290 MLSMFL-LIFQLTASGGTFPTE 310 >gi|148545100|ref|YP_001272470.1| hypothetical protein Lreu_1896 [Lactobacillus reuteri DSM 20016] gi|184154433|ref|YP_001842774.1| hypothetical protein LAR_1778 [Lactobacillus reuteri JCM 1112] gi|227364255|ref|ZP_03848349.1| membrane protein [Lactobacillus reuteri MM2-3] gi|325683457|ref|ZP_08162973.1| membrane protein [Lactobacillus reuteri MM4-1A] gi|148532134|gb|ABQ84133.1| membrane protein-like protein [Lactobacillus reuteri DSM 20016] gi|183225777|dbj|BAG26294.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070689|gb|EEI09018.1| membrane protein [Lactobacillus reuteri MM2-3] gi|324977807|gb|EGC14758.1| membrane protein [Lactobacillus reuteri MM4-1A] Length=380 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 85/373 (23%), Positives = 163/373 (44%), Gaps = 74/373 (19%) Query 40 LAALYLGGILN----PMTNLR--HFPIALVNEDAGPAGQQIVDGLVSG---LDKNKFDIR 90 + AL++G + P T+++ PIA+VNED+G G+ + + + + I+ Sbjct 15 IVALFIGAYFSITAIPSTHVKVNDLPIAIVNEDSGVTGENLAKQITEATSSSNSSAMSIK 74 Query 91 VVSPDEARRLL---DTAAVYGSALIPPTFSSQLRDFGASAVTPTRTDRPAITISTNPRAG 147 D ++LL + YG+ +IP FS +L+ ++T + + I N G Sbjct 75 WTVFDSEKKLLKDMNREKYYGAIVIPKDFSEKLQ-----SLTAPNAQKAELKIIINQGMG 129 Query 148 TLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAGAAAAGLASPIDVKSTAYNP 207 T + LT+ T +N K+ L VA ++ ++ A L++P+ +K N Sbjct 130 TTVTTQVNTALTQMTTQLNNKLSTNLLQNVANRS--TSIPATMALNLSNPLTIKKEKVNK 187 Query 208 LPNGTGNGLSAFYYALLLLLAGFTGSIVVSTLVDSMLGYVPAEFGPVYRFAEQVNISRFR 267 + NG + F+ ++ L GS+ S L LG+ ++ RF+ Sbjct 188 TGD-LANGGAHFFQSVWL------GSLGTSML----LGFAFSKI-------------RFK 223 Query 268 TLLVKWAVMVVLALLTSGVYLAIAHGLGMPIPLGWQVWLYGVFAIIAVGVTSSSLIAVLG 327 +L K++ + V L+ +G+ A+ G G+P W I+ V + + + + + Sbjct 224 SLKEKFSALFV-QLIAAGIS-ALVIGYGVPALQSW---------ILDVNIPNFTELGLFM 272 Query 328 SMGLLVSMLIFV--------ILGLP----------SAGATVPLEAVPAFFRWLAQFEPMH 369 S+ + +IF+ I+ +P VP E++ F+ LA + PM Sbjct 273 SLCAF-AFIIFINGVESWVGIISIPVFMLLLFFAAPLLTAVP-ESLNGFYSTLADWLPMS 330 Query 370 QVFLGVRSLLYLN 382 ++ GV+S++Y N Sbjct 331 YMYRGVKSIMYFN 343 >gi|30263062|ref|NP_845439.1| hypothetical protein BA_3114 [Bacillus anthracis str. Ames] gi|47528405|ref|YP_019754.1| hypothetical protein GBAA_3114 [Bacillus anthracis str. 'Ames Ancestor'] gi|49185903|ref|YP_029155.1| hypothetical protein BAS2897 [Bacillus anthracis str. Sterne] 28 more sequence titles Length=393 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/205 (28%), Positives = 94/205 (46%), Gaps = 24/205 (11%) Query 26 WMAPIATTLALMSALAALYLGGILNPMTNLRHFPIALVNEDAG---------PAGQQIVD 76 W++P+ L + + +L L + P N ++ PIA+VNED G GQ IVD Sbjct 8 WLSPVVALLVVF--IFSLTLFPTVQP--NPKNLPIAIVNEDQGVEIPNQPKMNMGQTIVD 63 Query 77 GLVSGLDKNKFD----IRVVSPDEARRLLDTAAVYGSALIPPTFSSQLRDFGASAVTPTR 132 + K + V + + ++ L+ Y + +IP FS++ AS TP + Sbjct 64 NMKKTSKSEKEPAIKWVEVKNKESVQKGLNKQEYYAALVIPKDFSTK----QASLRTP-Q 118 Query 133 TDRPAITISTNPRAGTLAASIAGQTLTRALTVVNGKVGERLTAEVAAQTGGVALAGAAAA 192 + P + I N T A+++AGQ L + +N V +++ + A+ G L AA Sbjct 119 SSSPEVEIFINQGMNTAASTMAGQILNSVVDNMNNNVRKQILEGLKAK--GATLTTDQAA 176 Query 193 GLASPIDVKSTAYNPLPNGTGNGLS 217 L +PI K T N + + NG S Sbjct 177 KLVTPITKKVTNVNEIGKNSANGNS 201 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 939989406426 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40