BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0182c
Length=370
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607323|ref|NP_214696.1| RNA polymerase factor sigma-70 [Myc... 749 0.0
gi|289748659|ref|ZP_06508037.1| alternative RNA polymerase sigma... 747 0.0
gi|289747950|ref|ZP_06507328.1| alternative RNA polymerase sigma... 743 0.0
gi|340625219|ref|YP_004743671.1| putative alternative RNA polyme... 741 0.0
gi|308231486|ref|ZP_07412609.2| alternative RNA polymerase sigma... 675 0.0
gi|308378571|ref|ZP_07483035.2| alternative RNA polymerase sigma... 671 0.0
gi|339293247|gb|AEJ45358.1| RNA polymerase factor sigma-70 [Myco... 668 0.0
gi|240172721|ref|ZP_04751380.1| RNA polymerase factor sigma-70 [... 561 5e-158
gi|41409719|ref|NP_962555.1| RNA polymerase factor sigma-70 [Myc... 549 2e-154
gi|118616807|ref|YP_905139.1| RNA polymerase factor sigma-70 [My... 546 2e-153
gi|336460072|gb|EGO38981.1| RNA polymerase sigma-70 factor, TIGR... 545 7e-153
gi|342859360|ref|ZP_08716014.1| RNA polymerase factor sigma-70 [... 542 4e-152
gi|254777437|ref|ZP_05218953.1| RNA polymerase factor sigma-70 [... 540 1e-151
gi|118464903|ref|YP_884118.1| RNA polymerase factor sigma-70 [My... 540 2e-151
gi|183980457|ref|YP_001848748.1| alternative RNA polymerase sigm... 537 1e-150
gi|254821403|ref|ZP_05226404.1| RNA polymerase factor sigma-70 [... 530 1e-148
gi|296167399|ref|ZP_06849801.1| RNA polymerase factor sigma-70 [... 520 2e-145
gi|118473080|ref|YP_884634.1| RNA polymerase factor sigma-70 [My... 470 2e-130
gi|108797119|ref|YP_637316.1| RNA polymerase factor sigma-70 [My... 448 6e-124
gi|126432742|ref|YP_001068433.1| RNA polymerase factor sigma-70 ... 447 1e-123
gi|145221122|ref|YP_001131800.1| RNA polymerase factor sigma-70 ... 444 1e-122
gi|315441915|ref|YP_004074794.1| RNA polymerase sigma-70 factor,... 443 2e-122
gi|120401177|ref|YP_951006.1| RNA polymerase factor sigma-70 [My... 441 9e-122
gi|169631627|ref|YP_001705276.1| RNA polymerase factor sigma-70 ... 433 2e-119
gi|111022327|ref|YP_705299.1| RNA polymerase factor sigma-70 [Rh... 425 6e-117
gi|226364867|ref|YP_002782649.1| RNA polymerase factor sigma-70 ... 422 4e-116
gi|312141532|ref|YP_004008868.1| sigma-70 factor sigg [Rhodococc... 419 5e-115
gi|325677252|ref|ZP_08156918.1| RNA polymerase sigma-70 factor [... 416 4e-114
gi|226307561|ref|YP_002767521.1| RNA polymerase ECF-type sigma f... 407 2e-111
gi|229493784|ref|ZP_04387562.1| RNA polymerase sigma-70 factor f... 406 3e-111
gi|262204332|ref|YP_003275540.1| RNA polymerase sigma-70 factor ... 382 7e-104
gi|343925371|ref|ZP_08764891.1| RNA polymerase ECF-type sigma fa... 380 2e-103
gi|297560233|ref|YP_003679207.1| ECF subfamily RNA polymerase si... 375 6e-102
gi|269127990|ref|YP_003301360.1| ECF subfamily RNA polymerase si... 364 2e-98
gi|296130084|ref|YP_003637334.1| RNA polymerase, sigma-24 subuni... 348 7e-94
gi|159035752|ref|YP_001535005.1| RNA polymerase factor sigma-70 ... 341 1e-91
gi|119718810|ref|YP_925775.1| RNA polymerase factor sigma-70 [No... 340 2e-91
gi|332670897|ref|YP_004453905.1| ECF subfamily RNA polymerase si... 336 3e-90
gi|333919055|ref|YP_004492636.1| putative RNA polymerase ECF-typ... 333 2e-89
gi|300785510|ref|YP_003765801.1| RNA polymerase sigma-70 factor,... 314 2e-83
gi|256395507|ref|YP_003117071.1| RNA polymerase factor sigma-70 ... 303 4e-80
gi|326384048|ref|ZP_08205731.1| RNA polymerase factor sigma-70 [... 300 3e-79
gi|284033120|ref|YP_003383051.1| ECF subfamily RNA polymerase si... 292 7e-77
gi|284029123|ref|YP_003379054.1| ECF subfamily RNA polymerase si... 291 1e-76
gi|256392827|ref|YP_003114391.1| RNA polymerase factor sigma-70 ... 288 8e-76
gi|284028516|ref|YP_003378447.1| ECF subfamily RNA polymerase si... 283 3e-74
gi|256392324|ref|YP_003113888.1| RNA polymerase factor sigma-70 ... 283 5e-74
gi|291301754|ref|YP_003513032.1| ECF subfamily RNA polymerase si... 277 2e-72
gi|256391713|ref|YP_003113277.1| RNA polymerase factor sigma-70 ... 276 5e-72
gi|296140930|ref|YP_003648173.1| ECF subfamily RNA polymerase si... 275 8e-72
>gi|15607323|ref|NP_214696.1| RNA polymerase factor sigma-70 [Mycobacterium tuberculosis H37Rv]
gi|15839560|ref|NP_334597.1| RNA polymerase factor sigma-70 [Mycobacterium tuberculosis CDC1551]
gi|31791360|ref|NP_853853.1| RNA polymerase factor sigma-70 [Mycobacterium bovis AF2122/97]
47 more sequence titles
Length=370
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/370 (100%), Positives = 370/370 (100%), Gaps = 0/370 (0%)
Query 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA
Sbjct 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
Query 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL
Sbjct 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
Query 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL
Sbjct 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
Query 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
Sbjct 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
Query 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH 300
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH
Sbjct 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH 300
Query 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL
Sbjct 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
Query 361 FPKFGLPDSL 370
FPKFGLPDSL
Sbjct 361 FPKFGLPDSL 370
>gi|289748659|ref|ZP_06508037.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
T92]
gi|289689246|gb|EFD56675.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
T92]
Length=370
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/370 (99%), Positives = 369/370 (99%), Gaps = 0/370 (0%)
Query 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA
Sbjct 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
Query 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL
Sbjct 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
Query 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL
Sbjct 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
Query 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
AFVAALQHLSPRQRAVLLLRD LQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
Sbjct 181 AFVAALQHLSPRQRAVLLLRDALQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
Query 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH 300
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH
Sbjct 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH 300
Query 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL
Sbjct 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
Query 361 FPKFGLPDSL 370
FPKFGLPDSL
Sbjct 361 FPKFGLPDSL 370
>gi|289747950|ref|ZP_06507328.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
02_1987]
gi|289760285|ref|ZP_06519663.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis T85]
gi|294994655|ref|ZP_06800346.1| RNA polymerase factor sigma-70 [Mycobacterium tuberculosis 210]
gi|289688478|gb|EFD55966.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
02_1987]
gi|289715849|gb|EFD79861.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis T85]
gi|326905938|gb|EGE52871.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
W-148]
Length=370
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/370 (99%), Positives = 368/370 (99%), Gaps = 0/370 (0%)
Query 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA
Sbjct 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
Query 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL
Sbjct 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
Query 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL
Sbjct 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
Query 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
Sbjct 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
Query 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH 300
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYT WYQGAQAIVTLIH
Sbjct 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTDWYQGAQAIVTLIH 300
Query 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
QQCPAYSPGDMRLISLIANGQPAAAMYMRAG VHLPFQLHVLDMAADRVSHVVAFLDTTL
Sbjct 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGYVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
Query 361 FPKFGLPDSL 370
FPKFGLPDSL
Sbjct 361 FPKFGLPDSL 370
>gi|340625219|ref|YP_004743671.1| putative alternative RNA polymerase sigma factor SIGG [Mycobacterium
canettii CIPT 140010059]
gi|340003409|emb|CCC42529.1| putative alternative RNA polymerase sigma factor SIGG (RNA polymerase
ECF type sigma factor) [Mycobacterium canettii CIPT
140010059]
Length=370
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/370 (99%), Positives = 367/370 (99%), Gaps = 0/370 (0%)
Query 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA
Sbjct 1 MRTSPMPAKFRSVRVVVITGSVTAAPVRVSETLRRLIDVSVLAENSGREPADERRGDFSA 60
Query 61 HTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
HTEPYRR LLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL
Sbjct 61 HTEPYRRALLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCL 120
Query 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL
Sbjct 121 TALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRL 180
Query 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA
Sbjct 181 AFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAA 240
Query 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIH 300
DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPY GWYQGAQAIVTLIH
Sbjct 241 DRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYIGWYQGAQAIVTLIH 300
Query 301 QQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
QQCPA SPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL
Sbjct 301 QQCPADSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTL 360
Query 361 FPKFGLPDSL 370
FPKFGLPDSL
Sbjct 361 FPKFGLPDSL 370
>gi|308231486|ref|ZP_07412609.2| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu001]
gi|308369326|ref|ZP_07417353.2| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu002]
gi|308370337|ref|ZP_07421126.2| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu003]
14 more sequence titles
Length=332
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/332 (99%), Positives = 332/332 (100%), Gaps = 0/332 (0%)
Query 39 VSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY 98
+SVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY
Sbjct 1 MSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY 60
Query 99 EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL 158
EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL
Sbjct 61 EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL 120
Query 159 PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST 218
PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST
Sbjct 121 PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST 180
Query 219 VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA 278
VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA
Sbjct 181 VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA 240
Query 279 IWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQ 338
IWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQ
Sbjct 241 IWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQ 300
Query 339 LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL
Sbjct 301 LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 332
>gi|308378571|ref|ZP_07483035.2| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu009]
gi|308380918|ref|ZP_07491485.2| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu011]
gi|308352060|gb|EFP40911.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu009]
gi|308359965|gb|EFP48816.1| alternative RNA polymerase sigma factor sigG [Mycobacterium tuberculosis
SUMu011]
Length=330
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/330 (99%), Positives = 330/330 (100%), Gaps = 0/330 (0%)
Query 41 VLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEG 100
+LAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEG
Sbjct 1 MLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEG 60
Query 101 FAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD 160
FAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD
Sbjct 61 FAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD 120
Query 161 VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVA 220
VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVA
Sbjct 121 VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVA 180
Query 221 VNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIW 280
VNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIW
Sbjct 181 VNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIW 240
Query 281 EMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLH 340
EMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLH
Sbjct 241 EMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLH 300
Query 341 VLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
VLDMAADRVSHVVAFLDTTLFPKFGLPDSL
Sbjct 301 VLDMAADRVSHVVAFLDTTLFPKFGLPDSL 330
>gi|339293247|gb|AEJ45358.1| RNA polymerase factor sigma-70 [Mycobacterium tuberculosis CCDC5079]
gi|339296893|gb|AEJ49003.1| RNA polymerase factor sigma-70 [Mycobacterium tuberculosis CCDC5180]
Length=332
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/332 (99%), Positives = 330/332 (99%), Gaps = 0/332 (0%)
Query 39 VSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY 98
+SVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY
Sbjct 1 MSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY 60
Query 99 EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL 158
EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL
Sbjct 61 EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL 120
Query 159 PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST 218
PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST
Sbjct 121 PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST 180
Query 219 VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA 278
VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA
Sbjct 181 VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA 240
Query 279 IWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQ 338
IWEMPPYT WYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAG VHLPFQ
Sbjct 241 IWEMPPYTDWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGYVHLPFQ 300
Query 339 LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL
Sbjct 301 LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 332
>gi|240172721|ref|ZP_04751380.1| RNA polymerase factor sigma-70 [Mycobacterium kansasii ATCC 12478]
Length=326
Score = 561 bits (1447), Expect = 5e-158, Method: Compositional matrix adjust.
Identities = 273/315 (87%), Positives = 291/315 (93%), Gaps = 0/315 (0%)
Query 56 GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIA 115
GDFSA EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY+ F GKSS+RTWLHRIA
Sbjct 12 GDFSARAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGKSSIRTWLHRIA 71
Query 116 TNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNR 175
TNTCL+ALEGR+RRPLPTGLG SADP+ ELVER EV WLEPLP+ TDDPADPS IVG+R
Sbjct 72 TNTCLSALEGRQRRPLPTGLGTSSADPTAELVERGEVPWLEPLPEPTDDPADPSVIVGSR 131
Query 176 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTV 235
ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVA+AIGT+TVAVNSLLQRARSQL+TV
Sbjct 132 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVAEAIGTTTVAVNSLLQRARSQLETV 191
Query 236 RPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAI 295
RPSA DRLSAPDSP+AQDLLARYIAAFE YDIDRLVELFTAEAIWEMPPY GWY+GAQ I
Sbjct 192 RPSAEDRLSAPDSPQAQDLLARYIAAFETYDIDRLVELFTAEAIWEMPPYVGWYRGAQDI 251
Query 296 VTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAF 355
+TLIHQQCPA SPGDMR++ L+ANGQPAAAMYMRAG H+PFQLHVLDM RVSHVVAF
Sbjct 252 ITLIHQQCPAESPGDMRMLPLVANGQPAAAMYMRAGQRHVPFQLHVLDMVDGRVSHVVAF 311
Query 356 LDTTLFPKFGLPDSL 370
LD +LFPKFGLP SL
Sbjct 312 LDGSLFPKFGLPPSL 326
>gi|41409719|ref|NP_962555.1| RNA polymerase factor sigma-70 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398551|gb|AAS06171.1| SigG [Mycobacterium avium subsp. paratuberculosis K-10]
Length=366
Score = 549 bits (1415), Expect = 2e-154, Method: Compositional matrix adjust.
Identities = 273/340 (81%), Positives = 299/340 (88%), Gaps = 2/340 (0%)
Query 31 ETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQET 90
+TLR L+ VS+LA+ E DF+AH EPYRRELLAHCYRMTGSLHDAEDLVQET
Sbjct 20 QTLRTLMRVSLLAQTP--EGDSVVGADFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQET 77
Query 91 LLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERR 150
LLRAWKAY+ F GKSS+RTWLHRIATNTCL+ALEGR+RRPLP GLG PSADP+ ELVERR
Sbjct 78 LLRAWKAYDRFEGKSSVRTWLHRIATNTCLSALEGRQRRPLPVGLGAPSADPTAELVERR 137
Query 151 EVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEV 210
EV WLEPLP +TDDPADPS IVG+RESVRLAFVAALQ+LSPRQRAVLLLRDVL W++AEV
Sbjct 138 EVPWLEPLPALTDDPADPSVIVGSRESVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEV 197
Query 211 ADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRL 270
A+AIGT+T AVNSLLQRAR+QL V PSA D+L+ PDS E QDLLARYIAAFE+YDIDRL
Sbjct 198 AEAIGTTTAAVNSLLQRARAQLDAVGPSADDQLAQPDSAETQDLLARYIAAFESYDIDRL 257
Query 271 VELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRA 330
VELFTAEAIWEMPPYTGWYQGA+ IVTLIHQQCPA GDMRL+ LIANGQPAAAMYMRA
Sbjct 258 VELFTAEAIWEMPPYTGWYQGARTIVTLIHQQCPAEGAGDMRLLPLIANGQPAAAMYMRA 317
Query 331 GDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
GDVHLPFQLHVLD+ DRVSHVVAFLD +LF KFGLP +L
Sbjct 318 GDVHLPFQLHVLDVRGDRVSHVVAFLDDSLFAKFGLPAAL 357
>gi|118616807|ref|YP_905139.1| RNA polymerase factor sigma-70 [Mycobacterium ulcerans Agy99]
gi|118568917|gb|ABL03668.1| alternative RNA polymerase sigma factor SigG [Mycobacterium ulcerans
Agy99]
Length=353
Score = 546 bits (1408), Expect = 2e-153, Method: Compositional matrix adjust.
Identities = 273/353 (78%), Positives = 299/353 (85%), Gaps = 11/353 (3%)
Query 29 VSETLRRLIDVSVLAENSGRE-------PADERR---GD-FSAHTEPYRRELLAHCYRMT 77
+S TLRRLIDVS LA NS + P ER GD F+ H EPYRRELLAHCYRMT
Sbjct 1 MSATLRRLIDVSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMT 60
Query 78 GSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGR 137
GS+HDAEDLVQETLLRAWK+Y F GKSSLRTWLHRIATNTC++ALEGR+RRPLPTGL
Sbjct 61 GSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCMSALEGRQRRPLPTGLAA 120
Query 138 PSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVL 197
+DP+ LVER EV WLEPLPD+ DPADPS IVG+RESVRLAFVAALQHLSPRQRAVL
Sbjct 121 SGSDPTAPLVERAEVPWLEPLPDLMADPADPSVIVGSRESVRLAFVAALQHLSPRQRAVL 180
Query 198 LLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLAR 257
LLRDVLQWK+AEVA AIGT+TVAVNSLLQRAR+QL+TV+PSA D L APDSPEAQDLL R
Sbjct 181 LLRDVLQWKAAEVAQAIGTTTVAVNSLLQRARAQLETVQPSADDGLVAPDSPEAQDLLTR 240
Query 258 YIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLI 317
YIAAFEA+DIDRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA PGDMRLI L+
Sbjct 241 YIAAFEAHDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLV 300
Query 318 ANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
ANGQPAAAMYMRAG+ +PF LHVLDM RVSHV AFLD +LFPKFGLP S+
Sbjct 301 ANGQPAAAMYMRAGETRVPFLLHVLDMVEGRVSHVTAFLDGSLFPKFGLPASI 353
>gi|336460072|gb|EGO38981.1| RNA polymerase sigma-70 factor, TIGR02960 family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=341
Score = 545 bits (1403), Expect = 7e-153, Method: Compositional matrix adjust.
Identities = 264/314 (85%), Positives = 286/314 (92%), Gaps = 0/314 (0%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF+AH EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY+ F GKSS+RTWLHRIAT
Sbjct 19 DFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGKSSVRTWLHRIAT 78
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
NTCL+ALEGR+RRPLP GLG PSADP+ ELVERREV WLEPLP +TDDPADPS IVG+RE
Sbjct 79 NTCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPWLEPLPALTDDPADPSVIVGSRE 138
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVR 236
SVRLAFVAALQ+LSPRQRAVLLLRDVL W++AEVA+AIGT+T AVNSLLQRAR+QL V
Sbjct 139 SVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAIGTTTAAVNSLLQRARAQLDAVG 198
Query 237 PSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIV 296
PSA D+L+ PDS E QDLLARYIAAFE+YDIDRLVELFTAEAIWEMPPYTGWYQGA+ IV
Sbjct 199 PSADDQLAQPDSAETQDLLARYIAAFESYDIDRLVELFTAEAIWEMPPYTGWYQGARTIV 258
Query 297 TLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFL 356
TLIHQQCPA GDMRL+ LIANGQPAAAMYMRAGDVHLPFQLHVLD+ DRVSHVVAFL
Sbjct 259 TLIHQQCPAEGAGDMRLLPLIANGQPAAAMYMRAGDVHLPFQLHVLDVRGDRVSHVVAFL 318
Query 357 DTTLFPKFGLPDSL 370
D +LF KFGLP +L
Sbjct 319 DDSLFAKFGLPAAL 332
>gi|342859360|ref|ZP_08716014.1| RNA polymerase factor sigma-70 [Mycobacterium colombiense CECT
3035]
gi|342133601|gb|EGT86804.1| RNA polymerase factor sigma-70 [Mycobacterium colombiense CECT
3035]
Length=337
Score = 542 bits (1396), Expect = 4e-152, Method: Compositional matrix adjust.
Identities = 265/332 (80%), Positives = 293/332 (89%), Gaps = 2/332 (0%)
Query 39 VSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY 98
+S+LA+NS +PA DFSAH EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY
Sbjct 3 MSLLAQNSEGDPAAGT--DFSAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY 60
Query 99 EGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPL 158
+ F GKSS+RTWLHRIATNTCLTALEGR+RRPLP GLG PS+DP+ ELVERREV WLEPL
Sbjct 61 DRFEGKSSMRTWLHRIATNTCLTALEGRQRRPLPVGLGGPSSDPTAELVERREVPWLEPL 120
Query 159 PDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTST 218
P++++ PADPS +VG+RESVRLAFVAALQ+L PRQRAVLLLRDVL W+SAEVADA+GT+T
Sbjct 121 PELSEHPADPSVVVGSRESVRLAFVAALQYLPPRQRAVLLLRDVLGWRSAEVADAVGTTT 180
Query 219 VAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEA 278
AVNSLLQRARSQL+ PS+ D L PDS EAQDLLARYIAAFE YDIDRLV+LFTAEA
Sbjct 181 TAVNSLLQRARSQLEAAGPSSEDPLVQPDSAEAQDLLARYIAAFETYDIDRLVDLFTAEA 240
Query 279 IWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQ 338
IWEMPPYTGWYQGA AIVTLIHQQCPA GDMR++ LIANGQPAAAMYMRAGDVH+PFQ
Sbjct 241 IWEMPPYTGWYQGAGAIVTLIHQQCPAEGSGDMRMLPLIANGQPAAAMYMRAGDVHVPFQ 300
Query 339 LHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
LHVLD+ +VSHVVAFLD +LF KFGLP SL
Sbjct 301 LHVLDVRGGKVSHVVAFLDDSLFAKFGLPGSL 332
>gi|254777437|ref|ZP_05218953.1| RNA polymerase factor sigma-70 [Mycobacterium avium subsp. avium
ATCC 25291]
Length=341
Score = 540 bits (1391), Expect = 1e-151, Method: Compositional matrix adjust.
Identities = 262/314 (84%), Positives = 285/314 (91%), Gaps = 0/314 (0%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF+AH EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY+ F GKSS+RTWLHRIAT
Sbjct 19 DFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGKSSVRTWLHRIAT 78
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
NTCL+ALEGR+RRPLP GLG PSADP+ ELVERREV WLEPLP ++DDPADPS IVG+RE
Sbjct 79 NTCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPWLEPLPALSDDPADPSVIVGSRE 138
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVR 236
SVRLAFVAALQ+LSPRQRAVLLLRDVL W++AEVA+AIGT+T AVNSLLQRAR+QL V
Sbjct 139 SVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAIGTTTAAVNSLLQRARAQLDAVG 198
Query 237 PSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIV 296
PSA D+ + PDS E QDLLARYIAAFE+YDIDRLVELFTAEAIWEMPPYTGWYQGA+ IV
Sbjct 199 PSADDQPAQPDSAETQDLLARYIAAFESYDIDRLVELFTAEAIWEMPPYTGWYQGARTIV 258
Query 297 TLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFL 356
TLIHQQCPA GDMRL+ LIANGQPAAAMYMRAGDVHLPFQLHVLD+ DRVSHVVAFL
Sbjct 259 TLIHQQCPAEGAGDMRLLPLIANGQPAAAMYMRAGDVHLPFQLHVLDVRGDRVSHVVAFL 318
Query 357 DTTLFPKFGLPDSL 370
D +LF KFGLP +L
Sbjct 319 DDSLFAKFGLPAAL 332
>gi|118464903|ref|YP_884118.1| RNA polymerase factor sigma-70 [Mycobacterium avium 104]
gi|118166190|gb|ABK67087.1| RNA polymerase sigma-70 factor, family protein [Mycobacterium
avium 104]
Length=327
Score = 540 bits (1390), Expect = 2e-151, Method: Compositional matrix adjust.
Identities = 262/314 (84%), Positives = 285/314 (91%), Gaps = 0/314 (0%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF+AH EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAY+ F GKSS+RTWLHRIAT
Sbjct 5 DFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGKSSVRTWLHRIAT 64
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
NTCL+ALEGR+RRPLP GLG PSADP+ ELVERREV WLEPLP ++DDPADPS IVG+RE
Sbjct 65 NTCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPWLEPLPALSDDPADPSVIVGSRE 124
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVR 236
SVRLAFVAALQ+LSPRQRAVLLLRDVL W++AEVA+AIGT+T AVNSLLQRAR+QL V
Sbjct 125 SVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAIGTTTAAVNSLLQRARAQLDAVG 184
Query 237 PSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIV 296
PSA D+ + PDS E QDLLARYIAAFE+YDIDRLVELFTAEAIWEMPPYTGWYQGA+ IV
Sbjct 185 PSADDQPAQPDSAETQDLLARYIAAFESYDIDRLVELFTAEAIWEMPPYTGWYQGARTIV 244
Query 297 TLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFL 356
TLIHQQCPA GDMRL+ LIANGQPAAAMYMRAGDVHLPFQLHVLD+ DRVSHVVAFL
Sbjct 245 TLIHQQCPAEGAGDMRLLPLIANGQPAAAMYMRAGDVHLPFQLHVLDVRGDRVSHVVAFL 304
Query 357 DTTLFPKFGLPDSL 370
D +LF KFGLP +L
Sbjct 305 DDSLFAKFGLPAAL 318
>gi|183980457|ref|YP_001848748.1| alternative RNA polymerase sigma factor SigG [Mycobacterium marinum
M]
gi|183173783|gb|ACC38893.1| alternative RNA polymerase sigma factor SigG [Mycobacterium marinum
M]
Length=343
Score = 537 bits (1383), Expect = 1e-150, Method: Compositional matrix adjust.
Identities = 266/343 (78%), Positives = 291/343 (85%), Gaps = 11/343 (3%)
Query 39 VSVLAENSGRE-------PADERR---GD-FSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87
+S LA NS + P ER GD F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct 1 MSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
Query 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147
QETLLRAWK+Y F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL +DP+ LV
Sbjct 61 QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
Query 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207
ER EV WLEPLPD+ DPADPS IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct 121 ERAEVPWLEPLPDLMADPADPSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
Query 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267
AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
Query 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327
DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA PGDMRLI L+ANGQPAAAMY
Sbjct 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
Query 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
MRAG+ H+PFQLHVLDM RVSHV AFLD +LFPKFGLP S+
Sbjct 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
>gi|254821403|ref|ZP_05226404.1| RNA polymerase factor sigma-70 [Mycobacterium intracellulare
ATCC 13950]
Length=323
Score = 530 bits (1366), Expect = 1e-148, Method: Compositional matrix adjust.
Identities = 257/314 (82%), Positives = 282/314 (90%), Gaps = 0/314 (0%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DFSA EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWK+Y+ F GKSSLRTWLHRIAT
Sbjct 5 DFSAQAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKSYDRFEGKSSLRTWLHRIAT 64
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
NTCL+ALEG+ RR LP GLG PS+DP+ ELVERREV WLEPLP++TD PADPS +VG+RE
Sbjct 65 NTCLSALEGKGRRALPVGLGAPSSDPTAELVERREVPWLEPLPELTDHPADPSVVVGSRE 124
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVR 236
SVRLAFVAALQ+L PRQRAVLLLRDVLQW+SAEVA+A+GT+T AVNSLLQRARSQL V
Sbjct 125 SVRLAFVAALQYLPPRQRAVLLLRDVLQWRSAEVAEAVGTTTTAVNSLLQRARSQLDAVG 184
Query 237 PSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIV 296
PSA D+L+ PDSPEAQDLLARYIAAFE YDIDRLVELFTAEAIWEMPPY GWY+GA IV
Sbjct 185 PSADDQLAPPDSPEAQDLLARYIAAFETYDIDRLVELFTAEAIWEMPPYAGWYRGAADIV 244
Query 297 TLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAFL 356
TLIHQQCPA + GDMRL+ L+ANGQ AAAMYMRAGDVH+PFQLHVLD+ ++VSHVVAFL
Sbjct 245 TLIHQQCPAEAGGDMRLLPLVANGQLAAAMYMRAGDVHVPFQLHVLDVHGEKVSHVVAFL 304
Query 357 DTTLFPKFGLPDSL 370
D TLF KFGLP SL
Sbjct 305 DETLFTKFGLPGSL 318
>gi|296167399|ref|ZP_06849801.1| RNA polymerase factor sigma-70 [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897343|gb|EFG76947.1| RNA polymerase factor sigma-70 [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=335
Score = 520 bits (1339), Expect = 2e-145, Method: Compositional matrix adjust.
Identities = 265/335 (80%), Positives = 291/335 (87%), Gaps = 3/335 (0%)
Query 39 VSVLAENSGRE---PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAW 95
+ +LA+N+ PA DFSAH EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAW
Sbjct 1 MGLLAQNAATADPGPAVGVDKDFSAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAW 60
Query 96 KAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWL 155
+AY+ F GKSS+RTWLHRIATNTCL+ALEGR+RRPLPTGLG PS+DP+ ELVERREV WL
Sbjct 61 RAYDRFEGKSSMRTWLHRIATNTCLSALEGRQRRPLPTGLGAPSSDPTAELVERREVPWL 120
Query 156 EPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIG 215
EPLPD+ +DPADPS IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+AEVA AIG
Sbjct 121 EPLPDLANDPADPSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAAAIG 180
Query 216 TSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFT 275
T+T AVNSLLQRARSQL A DRL+AP+SPEA+DLLARYIAAFEAYDI+RLVELFT
Sbjct 181 TTTTAVNSLLQRARSQLDAAGADAGDRLAAPESPEARDLLARYIAAFEAYDIERLVELFT 240
Query 276 AEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHL 335
AEAIWEMPPY GWY+GA+ IVTLIHQQCPA PGDMRL+ L+ANGQP AAMYMRAGD H+
Sbjct 241 AEAIWEMPPYAGWYRGARDIVTLIHQQCPAEHPGDMRLLPLVANGQPGAAMYMRAGDRHV 300
Query 336 PFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
PFQLHVLD+ D VS VVAFLD LF KFGLP SL
Sbjct 301 PFQLHVLDVRDDGVSRVVAFLDDALFAKFGLPGSL 335
>gi|118473080|ref|YP_884634.1| RNA polymerase factor sigma-70 [Mycobacterium smegmatis str.
MC2 155]
gi|118174367|gb|ABK75263.1| RNA polymerase sigma-70 factor, family protein [Mycobacterium
smegmatis str. MC2 155]
Length=340
Score = 470 bits (1209), Expect = 2e-130, Method: Compositional matrix adjust.
Identities = 235/345 (69%), Positives = 271/345 (79%), Gaps = 8/345 (2%)
Query 29 VSETLRRLIDVSVLAEN-SGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87
+S LR+L V+VLA PAD F A + YRRELLAHCYRMTGSLHDAEDLV
Sbjct 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56
Query 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147
QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++
Sbjct 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116
Query 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207
E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+
Sbjct 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175
Query 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267
+EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI
Sbjct 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235
Query 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327
D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY
Sbjct 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295
Query 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L
Sbjct 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340
>gi|108797119|ref|YP_637316.1| RNA polymerase factor sigma-70 [Mycobacterium sp. MCS]
gi|119866204|ref|YP_936156.1| RNA polymerase factor sigma-70 [Mycobacterium sp. KMS]
gi|108767538|gb|ABG06260.1| RNA polymerase, sigma-24 subunit, RpoE [Mycobacterium sp. MCS]
gi|119692293|gb|ABL89366.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium sp.
KMS]
Length=337
Score = 448 bits (1153), Expect = 6e-124, Method: Compositional matrix adjust.
Identities = 231/344 (68%), Positives = 267/344 (78%), Gaps = 9/344 (2%)
Query 29 VSETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQ 88
+S +R+L V+VLA P ++ F A + YRRELLAHCYRMTGSLHDAEDLVQ
Sbjct 1 MSAIVRKLASVTVLARTVDDGPDEDA---FLADAQKYRRELLAHCYRMTGSLHDAEDLVQ 57
Query 89 ETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVE 148
ET LRAWK+Y+GF GKSS+RTWL+RIATNT LTAL+GR RRPLPTGLG PS+DP ++ E
Sbjct 58 ETYLRAWKSYKGFQGKSSVRTWLYRIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHE 117
Query 149 RREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSA 208
R EV WL+PLPD D DPS+IVG+RESVRLAF+AALQHLSPRQRAVL+LR+VLQWK+A
Sbjct 118 RAEVPWLQPLPD---DAGDPSSIVGSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAA 174
Query 209 EVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDID 268
EVADA+GTST AVNSLLQRAR+QL + PS D L P+SPEA+DLL RYIAAFE YD+D
Sbjct 175 EVADALGTSTAAVNSLLQRARAQLDAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVD 234
Query 269 RLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYM 328
RL +LFTAEA+WEMPP+ GWYQG IV L CPA GDM+LI ANGQ AAA+YM
Sbjct 235 RLADLFTAEAVWEMPPFDGWYQGPHDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYM 294
Query 329 R--AGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
R A H FQLHVLD+ AD +SHVVAF TT P FGL D+L
Sbjct 295 RNPATGRHEAFQLHVLDVTADGISHVVAFHATTFAP-FGLADTL 337
>gi|126432742|ref|YP_001068433.1| RNA polymerase factor sigma-70 [Mycobacterium sp. JLS]
gi|126232542|gb|ABN95942.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium sp.
JLS]
Length=337
Score = 447 bits (1151), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 230/344 (67%), Positives = 267/344 (78%), Gaps = 9/344 (2%)
Query 29 VSETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQ 88
+S +R+L V+VLA P ++ F A + YRRELLAHCYRMTGSLHDAEDLVQ
Sbjct 1 MSAIVRKLASVTVLARTVDDGPDEDA---FLADAQKYRRELLAHCYRMTGSLHDAEDLVQ 57
Query 89 ETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVE 148
ET LRAWK+Y+GF GKSS+RTWL+RIATNT LTAL+GR RRPLPTGLG PS+DP ++ E
Sbjct 58 ETYLRAWKSYKGFQGKSSVRTWLYRIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHE 117
Query 149 RREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSA 208
R EV WL+PLPD D DPS+IVG+RESVRLAF+AALQHLSPRQRAVL+LR+VLQWK+A
Sbjct 118 RAEVPWLQPLPD---DAGDPSSIVGSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAA 174
Query 209 EVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDID 268
EVADA+GTST AVNSLLQRAR+QL + PS D L P+SPEA+DLL RYIAAFE YD+D
Sbjct 175 EVADALGTSTAAVNSLLQRARAQLDAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVD 234
Query 269 RLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYM 328
+L +LFTAEA+WEMPP+ GWYQG IV L CPA GDM+LI ANGQ AAA+YM
Sbjct 235 KLADLFTAEAVWEMPPFDGWYQGPHDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYM 294
Query 329 R--AGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
R A H FQLHVLD+ AD +SHVVAF TT P FGL D+L
Sbjct 295 RNPATGRHEAFQLHVLDVTADGISHVVAFHATTFAP-FGLADTL 337
>gi|145221122|ref|YP_001131800.1| RNA polymerase factor sigma-70 [Mycobacterium gilvum PYR-GCK]
gi|145213608|gb|ABP43012.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium gilvum
PYR-GCK]
Length=340
Score = 444 bits (1142), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 220/345 (64%), Positives = 268/345 (78%), Gaps = 8/345 (2%)
Query 29 VSETLRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQ 88
+S +R+L+ V+VLA + G + F A + YRRELLAHCYRMTGSLHDAEDLVQ
Sbjct 1 MSHPMRKLLFVTVLALDEGGA-----KDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQ 55
Query 89 ETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVE 148
ET LRAWK+Y+ F GKSS+RTWL+RIATNTCLTAL+GR+RRPLP+GLG PSADP +L E
Sbjct 56 ETYLRAWKSYDRFEGKSSVRTWLYRIATNTCLTALDGRKRRPLPSGLGGPSADPYADLTE 115
Query 149 RREVSWLEPLPD-VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207
R E++WLEP+PD +DPADPS I +RESVRLA +AALQHLSPRQRAVL+LR+VLQWK+
Sbjct 116 RHEIAWLEPIPDDPHEDPADPSVIAESRESVRLALIAALQHLSPRQRAVLVLREVLQWKA 175
Query 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267
AEV + IG ST AVNSLLQRAR+QL V PS D+ +P+SP+A + LA+YIAAFE YD+
Sbjct 176 AEVGEVIGASTAAVNSLLQRARAQLDEVAPSRDDQPVSPESPQAAEALAKYIAAFEDYDM 235
Query 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327
DRLVELFTA+A+WEMPP+ GWY G I+ L CPA GDMR + ANGQP AA+Y
Sbjct 236 DRLVELFTADAVWEMPPFDGWYSGPADIIALSKYHCPAAGAGDMRFLRTTANGQPVAALY 295
Query 328 MR--AGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
MR +VH FQLHVLD+ ++HVVAF+D +LF KFGLP++L
Sbjct 296 MRNPETNVHEAFQLHVLDLRTRGIAHVVAFMDVSLFRKFGLPETL 340
>gi|315441915|ref|YP_004074794.1| RNA polymerase sigma-70 factor, TIGR02960 family [Mycobacterium
sp. Spyr1]
gi|315260218|gb|ADT96959.1| RNA polymerase sigma-70 factor, TIGR02960 family [Mycobacterium
sp. Spyr1]
Length=336
Score = 443 bits (1139), Expect = 2e-122, Method: Compositional matrix adjust.
Identities = 219/341 (65%), Positives = 266/341 (79%), Gaps = 8/341 (2%)
Query 33 LRRLIDVSVLAENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLL 92
+R+L+ V+VLA + G + F A + YRRELLAHCYRMTGSLHDAEDLVQET L
Sbjct 1 MRKLLFVTVLALDEGGA-----KDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETYL 55
Query 93 RAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREV 152
RAWK+Y+ F GKSS+RTWL+RIATNTCLTAL+GR+RRPLP+GLG PSADP +L ER E+
Sbjct 56 RAWKSYDRFEGKSSVRTWLYRIATNTCLTALDGRKRRPLPSGLGGPSADPYADLTERHEI 115
Query 153 SWLEPLPD-VTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVA 211
+WLEP+PD +DPADPS I +RESVRLA +AALQHLSPRQRAVL+LR+VLQWK+AEV
Sbjct 116 AWLEPIPDDPHEDPADPSVIAESRESVRLALIAALQHLSPRQRAVLVLREVLQWKAAEVG 175
Query 212 DAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLV 271
+ IG ST AVNSLLQRAR+QL V PS D+ +P+SP+A + LA+YIAAFE YD+DRLV
Sbjct 176 EVIGASTAAVNSLLQRARAQLDEVAPSRDDQPVSPESPQAAEALAKYIAAFEDYDMDRLV 235
Query 272 ELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMR-- 329
ELFTA+A+WEMPP+ GWY G I+ L CPA GDMR + ANGQP AA+YMR
Sbjct 236 ELFTADAVWEMPPFDGWYSGPADIIALSKYHCPAAGAGDMRFLRTTANGQPVAALYMRNP 295
Query 330 AGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
+VH FQLHVLD+ ++HVVAF+D +LF KFGLP++L
Sbjct 296 ETNVHEAFQLHVLDLRTRGIAHVVAFMDVSLFRKFGLPETL 336
>gi|120401177|ref|YP_951006.1| RNA polymerase factor sigma-70 [Mycobacterium vanbaalenii PYR-1]
gi|119953995|gb|ABM11000.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium vanbaalenii
PYR-1]
Length=340
Score = 441 bits (1134), Expect = 9e-122, Method: Compositional matrix adjust.
Identities = 222/346 (65%), Positives = 269/346 (78%), Gaps = 10/346 (2%)
Query 29 VSETLRRLIDVSVLA-ENSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87
+S+ +R+L V+V A ++S E A F A + YRRELLAHCYRMTGSLHDAEDLV
Sbjct 1 MSQPVRKLHFVTVTALDDSSAEDA------FLADAQRYRRELLAHCYRMTGSLHDAEDLV 54
Query 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147
QET LRAWK+++GF GKSS+RTWL+RIATNTCLTAL+G +RR LP+GLG+P++DP+GEL
Sbjct 55 QETYLRAWKSFKGFQGKSSVRTWLYRIATNTCLTALDGNKRRALPSGLGQPASDPAGELF 114
Query 148 ERREVSWLEPLPDVT-DDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWK 206
R EV+WLEPLPD +DP+DPS I +RESVRLAF+AALQHL PRQRAVL+LR+VLQWK
Sbjct 115 VRPEVTWLEPLPDAPREDPSDPSVIAESRESVRLAFIAALQHLPPRQRAVLVLREVLQWK 174
Query 207 SAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYD 266
+AEV +A+GTST AVNSLLQRAR+QL + PS D P+SPEA +LL +YIAAFE YD
Sbjct 175 AAEVGEAVGTSTAAVNSLLQRARAQLDEISPSRDDEPVPPESPEAAELLDKYIAAFEDYD 234
Query 267 IDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAM 326
+DRLVELFT +A+WEMPP+ GWYQG IVTL QCPA GDMR + ANGQP AA+
Sbjct 235 MDRLVELFTDDAVWEMPPFDGWYQGPANIVTLSKVQCPAEKAGDMRFLRTTANGQPVAAL 294
Query 327 YMRAGD--VHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
YMR + VH FQLHVLD ++HVVAF + LF +FGLPD+L
Sbjct 295 YMRNPETGVHEAFQLHVLDAGKAGITHVVAFKENDLFARFGLPDTL 340
>gi|169631627|ref|YP_001705276.1| RNA polymerase factor sigma-70 [Mycobacterium abscessus ATCC
19977]
gi|169243594|emb|CAM64622.1| Probable alternative RNA polymerase sigma factor SigG [Mycobacterium
abscessus]
Length=321
Score = 433 bits (1114), Expect = 2e-119, Method: Compositional matrix adjust.
Identities = 210/315 (67%), Positives = 248/315 (79%), Gaps = 5/315 (1%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
+F +HTE YRRE+LAHCYRMTGS+HDAEDLVQET LR WKAY F GKSS+RTWL+RIAT
Sbjct 9 EFLSHTEQYRREILAHCYRMTGSIHDAEDLVQETYLRGWKAYARFEGKSSVRTWLYRIAT 68
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
NTCLTALEG++RRPLPTGLG PSADP EL ER E+ WLEPLP DD DP++IVG RE
Sbjct 69 NTCLTALEGKQRRPLPTGLGAPSADPLDELDERSEIPWLEPLP---DDATDPASIVGARE 125
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVR 236
SVRLAFVAALQHL +QRAVL+LR+VLQWK+ EVA+AIG++T AVNSLLQRAR+QL V
Sbjct 126 SVRLAFVAALQHLPAKQRAVLVLREVLQWKAQEVAEAIGSTTAAVNSLLQRARAQLHEVS 185
Query 237 PSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIV 296
P + L P+ P ++ L +YI AFE YD++ + ++FT EAIWEMPP+TGWYQG +I
Sbjct 186 PH-EETLLEPEDPMLREQLRQYINAFERYDVEAIAKMFTTEAIWEMPPFTGWYQGGPSIA 244
Query 297 TLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHVVAF 355
LI +QCPA GDMRL+ ANGQPA +YMR GD VH PFQ+HVLD+ D V+HVV F
Sbjct 245 ALIKEQCPAEHAGDMRLVETSANGQPAIGLYMREGDGVHRPFQMHVLDVTQDGVAHVVCF 304
Query 356 LDTTLFPKFGLPDSL 370
D +LF KFGLP L
Sbjct 305 FDISLFEKFGLPAEL 319
>gi|111022327|ref|YP_705299.1| RNA polymerase factor sigma-70 [Rhodococcus jostii RHA1]
gi|110821857|gb|ABG97141.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii
RHA1]
Length=327
Score = 425 bits (1093), Expect = 6e-117, Method: Compositional matrix adjust.
Identities = 210/317 (67%), Positives = 255/317 (81%), Gaps = 4/317 (1%)
Query 56 GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIA 115
GDF A +PYRRELLAHCYRM GSLHDAED +QET +RAW+ Y+G+ ++SLRTWL++IA
Sbjct 9 GDFLALADPYRRELLAHCYRMMGSLHDAEDQMQETFIRAWRGYDGYQQQASLRTWLYKIA 68
Query 116 TNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD--VTDDPADPSTIVG 173
TNTCLTAL+ + +RPLP+GLG P +DP+ +LVER EV WLEPLP+ + DD DP+T+V
Sbjct 69 TNTCLTALQSKSKRPLPSGLGAPDSDPTADLVERHEVPWLEPLPNRLIDDDANDPATVVT 128
Query 174 NRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQ 233
+RESVRLAF+AALQHL RQRAVL+LRDVLQWK++EVA A+GT+T AVNSLLQRAR+QL+
Sbjct 129 SRESVRLAFIAALQHLPARQRAVLVLRDVLQWKASEVAAALGTTTTAVNSLLQRARAQLE 188
Query 234 TVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQ 293
P+ AD L P+SPE +DLL RY+AAFE YDID +VELFT +A+WEMPP+ GWY+G
Sbjct 189 LATPT-ADTLVEPESPEERDLLDRYVAAFENYDIDAIVELFTKDAVWEMPPFDGWYRGGP 247
Query 294 AIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHV 352
+I TLI CPA +PGDMRL+ ANGQPA +YMR D VH PFQLHVLD+ AD VSHV
Sbjct 248 SIGTLIRGNCPANAPGDMRLVPTAANGQPALGLYMRGEDGVHRPFQLHVLDVTADGVSHV 307
Query 353 VAFLDTTLFPKFGLPDS 369
V F D LF KFGLPD+
Sbjct 308 VCFFDVDLFEKFGLPDT 324
>gi|226364867|ref|YP_002782649.1| RNA polymerase factor sigma-70 [Rhodococcus opacus B4]
gi|226243356|dbj|BAH53704.1| RNA polymerase ECF-type sigma factor SigG [Rhodococcus opacus
B4]
Length=327
Score = 422 bits (1085), Expect = 4e-116, Method: Compositional matrix adjust.
Identities = 207/317 (66%), Positives = 258/317 (82%), Gaps = 4/317 (1%)
Query 56 GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIA 115
G+F A +PYRRELLAHCYRM GSLHDAED +QET +RAW+ Y+G+ ++SLRTWL++IA
Sbjct 9 GEFLALADPYRRELLAHCYRMMGSLHDAEDQMQETFIRAWRGYDGYQQQASLRTWLYKIA 68
Query 116 TNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD--VTDDPADPSTIVG 173
TNTCLTAL+ R +RPLP+GLG P +DP+ ELVER EV WL PLP+ + DD +DP+T+V
Sbjct 69 TNTCLTALQNRSKRPLPSGLGAPDSDPTAELVERHEVPWLGPLPNRLIDDDASDPATVVT 128
Query 174 NRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQ 233
+RESVRLAF+AALQHL RQRAVL+LRDVLQWK++EVA A+GT+T AVNSLLQRAR+QL+
Sbjct 129 SRESVRLAFIAALQHLPARQRAVLVLRDVLQWKASEVATALGTTTTAVNSLLQRARTQLE 188
Query 234 TVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQ 293
PS AD L P+SPE ++LL RY+AAFE YDID +VELFT +A+WEMPP+ GWY+G
Sbjct 189 LATPS-ADTLVEPESPEERELLDRYVAAFENYDIDGIVELFTKDAVWEMPPFEGWYRGGT 247
Query 294 AIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHV 352
AI TLI ++CPA + GDM+L+S ++NGQPA +YMR D VH PFQLHVLD+ A+ VSHV
Sbjct 248 AIGTLISEKCPAKAAGDMQLVSTVSNGQPALGLYMRGEDGVHRPFQLHVLDVTAEGVSHV 307
Query 353 VAFLDTTLFPKFGLPDS 369
V F D LF KFGLP++
Sbjct 308 VCFFDVDLFEKFGLPET 324
>gi|312141532|ref|YP_004008868.1| sigma-70 factor sigg [Rhodococcus equi 103S]
gi|311890871|emb|CBH50190.1| sigma-70 factor SigG [Rhodococcus equi 103S]
Length=380
Score = 419 bits (1076), Expect = 5e-115, Method: Compositional matrix adjust.
Identities = 209/320 (66%), Positives = 245/320 (77%), Gaps = 8/320 (2%)
Query 58 FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATN 117
F +PYRRELLAHCYRM GS+HDAEDL+QET++RAW+ Y F G+SS+RTWLHRIATN
Sbjct 62 FLTAADPYRRELLAHCYRMMGSIHDAEDLLQETMVRAWRGYGKFDGRSSVRTWLHRIATN 121
Query 118 TCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD--VTDDPA----DPSTI 171
TCLTALEGR RRPLPTGLG PS+DPS EL+ERREV WLEP+PD V D DP+T+
Sbjct 122 TCLTALEGRERRPLPTGLGAPSSDPSDELIERREVPWLEPIPDSMVWGDSGWGADDPATV 181
Query 172 VGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQ 231
V RESVRLAFVAALQHLS RQRAVL+LRDVLQWK+AEVA+A+GTST AVNSLLQRAR+Q
Sbjct 182 VAARESVRLAFVAALQHLSARQRAVLVLRDVLQWKAAEVAEALGTSTAAVNSLLQRARAQ 241
Query 232 LQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQG 291
L P+ D L P+S +A++LL RY+ FE YDID LV+LFT +A+WEMPP+ GWY G
Sbjct 242 LSEATPN-PDALVEPESDDARELLRRYVDGFERYDIDGLVDLFTQDAVWEMPPFVGWYVG 300
Query 292 AQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVS 350
I LI ++CP+ PGDMRL+ NGQPA +YMR D VH PFQLHVLD+ V+
Sbjct 301 GADIARLIKEKCPSEGPGDMRLLPASGNGQPALGLYMREPDGVHRPFQLHVLDITERGVA 360
Query 351 HVVAFLDTTLFPKFGLPDSL 370
HV F D LF +FGLP L
Sbjct 361 HVTCFFDVDLFERFGLPPQL 380
>gi|325677252|ref|ZP_08156918.1| RNA polymerase sigma-70 factor [Rhodococcus equi ATCC 33707]
gi|325551949|gb|EGD21645.1| RNA polymerase sigma-70 factor [Rhodococcus equi ATCC 33707]
Length=329
Score = 416 bits (1068), Expect = 4e-114, Method: Compositional matrix adjust.
Identities = 208/320 (65%), Positives = 243/320 (76%), Gaps = 8/320 (2%)
Query 58 FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATN 117
F +PYRRELLAHCYRM GS+HDAEDL+QET++RAW+ Y F G+SS+RTWLHRIATN
Sbjct 11 FLTAADPYRRELLAHCYRMMGSIHDAEDLLQETMVRAWRGYGKFDGRSSVRTWLHRIATN 70
Query 118 TCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD--VTDDPA----DPSTI 171
TCLTALEGR RRPLPTGLG PS+ PS EL+ERREV WLEP+PD V D DP+T+
Sbjct 71 TCLTALEGRERRPLPTGLGAPSSAPSDELIERREVPWLEPIPDSMVWGDSGWGADDPATV 130
Query 172 VGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQ 231
V RESVRLAFVAALQHLS RQRAVL+LRDVLQWK+AEVA+A+GTST AVNSLLQRAR+Q
Sbjct 131 VAARESVRLAFVAALQHLSARQRAVLVLRDVLQWKAAEVAEALGTSTAAVNSLLQRARAQ 190
Query 232 LQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQG 291
L P+ D L P S +A++LL RY+ FE YDID LV+LFT +A+WEMPP+ GWY G
Sbjct 191 LSEATPN-PDALVEPGSDDARELLRRYVDGFERYDIDGLVDLFTQDAVWEMPPFVGWYVG 249
Query 292 AQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVS 350
I LI ++CP+ PGDMRL+ NGQPA +YMR D VH PFQLHVLD+ V+
Sbjct 250 GADIARLIKEKCPSEGPGDMRLLPASGNGQPALGLYMREPDGVHRPFQLHVLDITERGVA 309
Query 351 HVVAFLDTTLFPKFGLPDSL 370
HV F D LF +FGLP L
Sbjct 310 HVTCFFDVDLFERFGLPPQL 329
>gi|226307561|ref|YP_002767521.1| RNA polymerase ECF-type sigma factor SigG [Rhodococcus erythropolis
PR4]
gi|226186678|dbj|BAH34782.1| putative RNA polymerase ECF-type sigma factor SigG [Rhodococcus
erythropolis PR4]
Length=324
Score = 407 bits (1045), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 197/316 (63%), Positives = 243/316 (77%), Gaps = 3/316 (0%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF +PYRRELLAHCYRM GS+HDAED VQET +RAW+ ++G+ G+SSLRTWL+RIAT
Sbjct 10 DFLTLADPYRRELLAHCYRMMGSIHDAEDQVQETFIRAWRGFDGYKGQSSLRTWLYRIAT 69
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD-VTDDPADPSTIVGNR 175
NTCLTALEGR RRPLPTGLG PS+DP+ +L+ER E++WLEP+ D D DP+ +V NR
Sbjct 70 NTCLTALEGRSRRPLPTGLGAPSSDPADDLIERNEIAWLEPIADSALGDVNDPAVMVVNR 129
Query 176 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTV 235
+SVRLA VAALQHLS RQRAVL+LRDVLQWK++EVA+A+ T+T AVNSLLQRAR+Q+ +
Sbjct 130 DSVRLALVAALQHLSARQRAVLVLRDVLQWKASEVAEALDTTTTAVNSLLQRARAQINHI 189
Query 236 RPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAI 295
P+ D L P + A+ LL Y+ +FE+YD++ +VELFT EAIWEMPP+ GWYQG +AI
Sbjct 190 GPT-EDDLVEPSTEAARKLLRDYVHSFESYDVEAIVELFTREAIWEMPPFEGWYQGPEAI 248
Query 296 VTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHVVA 354
LI +CPA PG MRL+ ANGQPA +YMR D VH FQLHVLD+ +SHV
Sbjct 249 GQLIGTKCPADGPGAMRLLPTAANGQPAFGLYMREPDGVHRAFQLHVLDVTESGISHVTC 308
Query 355 FLDTTLFPKFGLPDSL 370
F D +LF +FGLP L
Sbjct 309 FFDLSLFARFGLPAEL 324
>gi|229493784|ref|ZP_04387562.1| RNA polymerase sigma-70 factor family protein [Rhodococcus erythropolis
SK121]
gi|229319283|gb|EEN85126.1| RNA polymerase sigma-70 factor family protein [Rhodococcus erythropolis
SK121]
Length=324
Score = 406 bits (1044), Expect = 3e-111, Method: Compositional matrix adjust.
Identities = 197/316 (63%), Positives = 243/316 (77%), Gaps = 3/316 (0%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF +PYRRELLAHCYRM GS+HDAED VQET +RAW+ ++G+ G+SSLRTWL+RIAT
Sbjct 10 DFLTLADPYRRELLAHCYRMMGSIHDAEDQVQETFIRAWRGFDGYKGQSSLRTWLYRIAT 69
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD-VTDDPADPSTIVGNR 175
NTCLTALEGR RRPLPTGLG PS+DP+ +L+ER E++WLEP+ D D DP+ +V NR
Sbjct 70 NTCLTALEGRSRRPLPTGLGAPSSDPADDLIERNEIAWLEPIADSALGDVNDPAVMVVNR 129
Query 176 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTV 235
+SVRLA VAALQHLS RQRAVL+LRDVLQWK++EVA+A+ T+T AVNSLLQRAR+Q+ +
Sbjct 130 DSVRLALVAALQHLSARQRAVLVLRDVLQWKASEVAEALDTTTTAVNSLLQRARAQINHI 189
Query 236 RPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAI 295
P+ D L P + A+ LL Y+ +FE+YD++ +VELFT EAIWEMPP+ GWYQG +AI
Sbjct 190 GPT-EDDLVEPTTEAARKLLRDYVHSFESYDVEAIVELFTREAIWEMPPFEGWYQGPEAI 248
Query 296 VTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHVVA 354
LI +CPA PG MRL+ ANGQPA +YMR D VH FQLHVLD+ +SHV
Sbjct 249 GQLIGTKCPADGPGAMRLLPTAANGQPAFGLYMREPDGVHRAFQLHVLDVTESGISHVTC 308
Query 355 FLDTTLFPKFGLPDSL 370
F D +LF +FGLP L
Sbjct 309 FFDLSLFARFGLPAEL 324
>gi|262204332|ref|YP_003275540.1| RNA polymerase sigma-70 factor [Gordonia bronchialis DSM 43247]
gi|262087679|gb|ACY23647.1| RNA polymerase sigma-70 factor [Gordonia bronchialis DSM 43247]
Length=348
Score = 382 bits (980), Expect = 7e-104, Method: Compositional matrix adjust.
Identities = 191/321 (60%), Positives = 238/321 (75%), Gaps = 11/321 (3%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
+F TEP+RRE++AHCYRM GS HDAEDL Q+T LRAW+ Y F +SS+RTWLH+IAT
Sbjct 13 EFLQVTEPFRREIVAHCYRMMGSHHDAEDLTQDTYLRAWRGYSKFDHRSSVRTWLHKIAT 72
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTD-----DPADPSTI 171
NTCLTAL+ R+RRPLP+GLG + DP+ +L++ EV WLEP D D ADP+ +
Sbjct 73 NTCLTALQSRQRRPLPSGLGGDAFDPTDDLLQDHEVPWLEPFTGTVDDVSPGDDADPAYV 132
Query 172 VGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQ 231
VG RESVRLAF+AALQHL RQRAVL+LRDVLQWK+AEVAD +G +T VNSLLQRAR Q
Sbjct 133 VGARESVRLAFIAALQHLPERQRAVLILRDVLQWKAAEVADTLGVTTATVNSLLQRAREQ 192
Query 232 LQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQG 291
L++ RP+ + S D + LLA+Y++AFE YD+D +VELFT +AIWEMPP+TGWYQG
Sbjct 193 LKSSRPT-QETSSTLDDEAQRALLAKYVSAFERYDVDAIVELFTDKAIWEMPPFTGWYQG 251
Query 292 AQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDM-AADRV 349
A+ I TLI + CPA PGD L+ +ANGQPA +YMR D VH PFQL VLD+ + +V
Sbjct 252 AEQIGTLIRRNCPAEGPGDQILLPAVANGQPAFGLYMREPDGVHRPFQLQVLDLDPSGKV 311
Query 350 SHVVAFLDTTL---FPKFGLP 367
+VVAF T+ F +FGLP
Sbjct 312 QYVVAFFSDTMEEDFARFGLP 332
>gi|343925371|ref|ZP_08764891.1| RNA polymerase ECF-type sigma factor SigG [Gordonia alkanivorans
NBRC 16433]
gi|343764637|dbj|GAA11817.1| RNA polymerase ECF-type sigma factor SigG [Gordonia alkanivorans
NBRC 16433]
Length=353
Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 191/326 (59%), Positives = 236/326 (73%), Gaps = 14/326 (4%)
Query 56 GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIA 115
+F EP+RRE++AHCYRM GS HDAEDL QET LRAW+ Y F +SS+RTWLH+IA
Sbjct 12 AEFLEIAEPFRREIIAHCYRMMGSHHDAEDLAQETFLRAWRGYAKFDHRSSVRTWLHKIA 71
Query 116 TNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTD-----DPADPST 170
TNTCLTAL+ +RRPLP+GLG + DP+ +L++ EV WLEP D D ADP+
Sbjct 72 TNTCLTALQSSQRRPLPSGLGGDAFDPTDDLLQNHEVPWLEPYAGTVDEITPGDAADPAF 131
Query 171 IVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARS 230
+VG RESVRLAF+AALQH+ RQRAVL+LRDVLQW++AEVAD IG +T VNSLLQRAR
Sbjct 132 VVGARESVRLAFIAALQHIPERQRAVLILRDVLQWRAAEVADTIGVTTATVNSLLQRARE 191
Query 231 QLQTVRP---SAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTG 287
QL+T RP SA+ S D ++LLARY++AFE YD+D + E+FT +AIWEMPP+TG
Sbjct 192 QLKTARPQAESASADSSVLDDDAKRELLARYVSAFERYDVDAIAEMFTDKAIWEMPPFTG 251
Query 288 WYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDM-- 344
WYQG +AI TLI + CPA GD L+ +ANGQPA +YMR D VH PFQL VLD+
Sbjct 252 WYQGPEAIGTLIRKNCPAEKAGDQILLPTVANGQPAFGLYMREPDGVHRPFQLQVLDIDA 311
Query 345 AADRVSHVVAFLDTTL---FPKFGLP 367
A +V +VVAF T+ F +FGLP
Sbjct 312 QAKKVGYVVAFFSDTMEEDFARFGLP 337
>gi|297560233|ref|YP_003679207.1| ECF subfamily RNA polymerase sigma-24 subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844681|gb|ADH66701.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length=330
Score = 375 bits (963), Expect = 6e-102, Method: Compositional matrix adjust.
Identities = 196/317 (62%), Positives = 234/317 (74%), Gaps = 5/317 (1%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF + +PYRREL AHCYRM GS+HDAEDLVQET LRAWKAY+ F G+SSLRTWLHRIAT
Sbjct 12 DFMSAADPYRRELFAHCYRMLGSVHDAEDLVQETYLRAWKAYDRFEGRSSLRTWLHRIAT 71
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
CLTAL+ RRRRPLPTGLG P+A+P GEL +R E+ WLEP+PD DP T+V RE
Sbjct 72 TACLTALDRRRRRPLPTGLGGPAAEPEGELADRPELPWLEPVPDALVGADDPGTVVAARE 131
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVR 236
SVRLA VAALQHL PRQRAVL+LRDVL++ +AEVAD +G S AVNSLLQRAR+QL V
Sbjct 132 SVRLALVAALQHLRPRQRAVLILRDVLRYSAAEVADTLGVSVPAVNSLLQRARAQLARVT 191
Query 237 PSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIV 296
P A+ A PE +++L RY+ AFE+YDI + E+FTA+A++EMPP+ W +GA I
Sbjct 192 P--AEEEVAEPRPEQREVLDRYVDAFESYDISAITEVFTADAVFEMPPFATWVRGAGHIG 249
Query 297 TLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMA--ADRVSHVV 353
LI CPA PGDM L+ ANGQPA A+YMR GD VH F + VL++A D V+H V
Sbjct 250 RLIAAHCPASGPGDMALVPTGANGQPAFALYMRGGDGVHRAFGIQVLELAPGGDAVAHAV 309
Query 354 AFLDTTLFPKFGLPDSL 370
F DT+LF FGLP L
Sbjct 310 MFFDTSLFRHFGLPAVL 326
>gi|269127990|ref|YP_003301360.1| ECF subfamily RNA polymerase sigma-24 subunit [Thermomonospora
curvata DSM 43183]
gi|268312948|gb|ACY99322.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermomonospora
curvata DSM 43183]
Length=332
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 189/318 (60%), Positives = 236/318 (75%), Gaps = 6/318 (1%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
+F+ +P+RREL+AHCYRM GS+HDAEDLVQET LRAW+AY+ F G+S+LRTWL+RIAT
Sbjct 12 EFARLADPFRRELMAHCYRMLGSVHDAEDLVQETYLRAWRAYDRFEGRSALRTWLYRIAT 71
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD--VTDDPADPSTIVGN 174
CLTALE R RRP+P GLG PSADP+G+LVER EV WLEP+PD V D ADP+ +V +
Sbjct 72 RACLTALESRARRPMPAGLGAPSADPAGDLVERPEVPWLEPVPDELVGADDADPAAVVVS 131
Query 175 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQT 234
RES+RLAFVAALQHL PRQRAVLLLR+VL W++AEVA+ +G ST AVNS+LQRAR++L+
Sbjct 132 RESIRLAFVAALQHLPPRQRAVLLLREVLGWRAAEVAETVGVSTAAVNSMLQRARARLRR 191
Query 235 VRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQA 294
P D + P + +DLL RY+ AFEA D+ +V L T +A+WEMPP+ WY+G A
Sbjct 192 AAPG-RDGTAGPLTAGQRDLLDRYVRAFEAKDVPAIVALLTDDAVWEMPPFPAWYRGPAA 250
Query 295 IVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYM--RAGDVHLPFQLHVLDMAADRVSHV 352
I + +CPA PG +R++ + ANGQPA A Y+ RA + PF L VL + DRVSHV
Sbjct 251 IGHHLAHRCPA-GPGGLRIVPVAANGQPALAQYLRDRADGAYRPFNLQVLTLTGDRVSHV 309
Query 353 VAFLDTTLFPKFGLPDSL 370
FLDT LF FGLP L
Sbjct 310 ANFLDTALFAVFGLPPQL 327
>gi|296130084|ref|YP_003637334.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cellulomonas
flavigena DSM 20109]
gi|296021899|gb|ADG75135.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cellulomonas
flavigena DSM 20109]
Length=335
Score = 348 bits (894), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 179/317 (57%), Positives = 214/317 (68%), Gaps = 7/317 (2%)
Query 58 FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATN 117
F P RRE+LAHCYRMTGS+HDAED++QET LRAW+A GF +SSLRTW+ RIATN
Sbjct 21 FEQRLAPMRREILAHCYRMTGSVHDAEDMLQETYLRAWRAMRGFENRSSLRTWVFRIATN 80
Query 118 TCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDV---TDDPADPSTIVGN 174
CLT LEGRRRRPLPTGLG P+ADP E E WLEPLPD P DP+ +
Sbjct 81 ACLTHLEGRRRRPLPTGLGAPAADPRHEPREDHGTPWLEPLPDALVWAQPPVDPAETAVH 140
Query 175 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQT 234
R+SVRLAFVAALQHL+ +QRAVLLLRDVL W +AEVADA+ S A NS LQRAR+ +
Sbjct 141 RDSVRLAFVAALQHLTAQQRAVLLLRDVLAWSAAEVADALDLSVAAANSTLQRARAHMAN 200
Query 235 VRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQA 294
V+ P P Q+LLARY+AAFEAYD+ +VEL + +WEMPP+ GWY G QA
Sbjct 201 VKDVTP---LEPTDPRHQELLARYVAAFEAYDVAAIVELLATDVVWEMPPFPGWYAGPQA 257
Query 295 IVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDV-HLPFQLHVLDMAADRVSHVV 353
+ LI CPA PGDMR++ ANG PA A+YMR + H FQ+ + + AD V HV
Sbjct 258 VGELIGTWCPAQVPGDMRMVPTRANGLPAFALYMRGEEGRHRAFQVQQVTVTADGVEHVT 317
Query 354 AFLDTTLFPKFGLPDSL 370
+ LF +FGLP L
Sbjct 318 VWFGEDLFTRFGLPVEL 334
>gi|159035752|ref|YP_001535005.1| RNA polymerase factor sigma-70 [Salinispora arenicola CNS-205]
gi|157914587|gb|ABV96014.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Salinispora
arenicola CNS-205]
Length=338
Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 178/319 (56%), Positives = 219/319 (69%), Gaps = 5/319 (1%)
Query 55 RGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRI 114
R DFS P RRELL HCYRM GS+HDAEDLVQET LRAW++Y+GF G+SSLRTWL+RI
Sbjct 8 RADFSQLAAPLRRELLVHCYRMLGSMHDAEDLVQETYLRAWRSYDGFEGRSSLRTWLYRI 67
Query 115 ATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPD--VTDDPADPSTIV 172
AT CL A+E R RRPLP GLG P ADP + E WLEPLPD + + DP+ IV
Sbjct 68 ATTVCLRAMENRGRRPLPVGLGAPGADPEERPIHDGETPWLEPLPDALLRREREDPAAIV 127
Query 173 GNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQL 232
R+SVRLAFVAALQHL PRQRAVL+LRDVLQW++ EVAD +G S AVNSLLQRAR+ L
Sbjct 128 SARQSVRLAFVAALQHLPPRQRAVLILRDVLQWRAVEVADLLGGSPAAVNSLLQRARATL 187
Query 233 QTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGA 292
+ P DR++ P + ++LL RY+ AFEA DI LV LF ++A+WEMPPYT WY+G
Sbjct 188 GHLSPR-EDRVTEPTTAAERELLDRYVTAFEAKDIAGLVRLFASDAVWEMPPYTSWYRGP 246
Query 293 QAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPF-QLHVLDMAADRVSH 351
+ I + +C A +PG +RL+ ANGQPA A Y+ AG L VL + + ++
Sbjct 247 RDIGRHLALRCLA-TPGPVRLVPTAANGQPALAGYVAAGGSTFALTNLQVLSVTSTAITR 305
Query 352 VVAFLDTTLFPKFGLPDSL 370
+ F D LF FGLP S+
Sbjct 306 ITVFSDPRLFTAFGLPASV 324
>gi|119718810|ref|YP_925775.1| RNA polymerase factor sigma-70 [Nocardioides sp. JS614]
gi|119539471|gb|ABL84088.1| RNA polymerase, sigma subunit, ECF family [Nocardioides sp. JS614]
Length=365
Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 178/323 (56%), Positives = 217/323 (68%), Gaps = 24/323 (7%)
Query 56 GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIA 115
GDF T+ Y+RELLAHCYRM+GS+ +AEDLVQET LRAWKA F G+SS+RTWL+RIA
Sbjct 31 GDFPTLTQRYQRELLAHCYRMSGSVQEAEDLVQETFLRAWKASADFQGRSSVRTWLYRIA 90
Query 116 TNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNR 175
TN CLT LEGR RRPLP GLG P A L E E++WLEP+PD + +V R
Sbjct 91 TNVCLTNLEGRPRRPLPAGLGTPDAMAGDALEENHEIAWLEPVPDA-------AVVVAER 143
Query 176 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQL--- 232
+S+RLAFVAALQHL RQRAVL+LRDVL+W +AEVA+A+ T++ AVNS LQRA +QL
Sbjct 144 DSIRLAFVAALQHLPARQRAVLILRDVLRWSAAEVAEALDTTSAAVNSALQRAHAQLAGR 203
Query 233 ----QTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGW 288
+TV P +P Q LL RY+ AF D+D +V L T+EA+WEMPP+T W
Sbjct 204 GLTEETVEPDL--------TPAQQQLLERYVDAFWRKDVDAIVSLLTSEAVWEMPPFTNW 255
Query 289 YQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHL-PFQLHVLDMAAD 347
+ G I LI + CP DM ++ ANGQPA +YMR D PFQL VL++
Sbjct 256 FVGPDNIGELIDKHCPG-GWNDMPMLRTSANGQPAFGLYMRMADGGFTPFQLQVLELDGS 314
Query 348 RVSHVVAFLDTTLFPKFGLPDSL 370
RV+HV AF DT LF KFGLPD L
Sbjct 315 RVAHVHAFFDTALFAKFGLPDRL 337
>gi|332670897|ref|YP_004453905.1| ECF subfamily RNA polymerase sigma-24 subunit [Cellulomonas fimi
ATCC 484]
gi|332339935|gb|AEE46518.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cellulomonas
fimi ATCC 484]
Length=332
Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/304 (57%), Positives = 212/304 (70%), Gaps = 7/304 (2%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF+ EP RRELLAHCYRMTGSLHDAED +QET LRAW+A + F +SS+RTW++RIAT
Sbjct 9 DFTTLVEPLRRELLAHCYRMTGSLHDAEDALQETYLRAWRAIDRFEARSSVRTWMYRIAT 68
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDV---TDDPADPSTIVG 173
NTCLT LEGR RRPLPTGLG P+ADP+ E + R V+WLEPLPD + P+DP+
Sbjct 69 NTCLTHLEGRSRRPLPTGLGAPAADPAHEPLPERSVAWLEPLPDAVVWSGPPSDPAAEAV 128
Query 174 NRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQ 233
R+SVRLAFVAALQHL+ +QRAVLLLRDVL+W +AE A A+G + VNS LQRAR+ +
Sbjct 129 TRDSVRLAFVAALQHLTAQQRAVLLLRDVLEWSAAETAQALGLTVAGVNSTLQRARAHVG 188
Query 234 TVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQ 293
P DR + D + LL Y+ AFE+YDID +V L T + +WEMPPY WY+G
Sbjct 189 RRDP---DRQDSLDDERRRRLLDAYVDAFESYDIDGIVALMTQDVVWEMPPYPQWYRGRA 245
Query 294 AIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHV 352
+ LI CPA PG MRL+ ANGQPA +Y+R D VH FQL VLD+ A+ ++H
Sbjct 246 DVAALIGTWCPAKGPGAMRLLPTAANGQPAFGVYLRGDDGVHRAFQLAVLDLGAEAITHA 305
Query 353 VAFL 356
+
Sbjct 306 TVWF 309
>gi|333919055|ref|YP_004492636.1| putative RNA polymerase ECF-type sigma factor SigG [Amycolicicoccus
subflavus DQS3-9A1]
gi|333481276|gb|AEF39836.1| Putative RNA polymerase ECF-type sigma factor SigG [Amycolicicoccus
subflavus DQS3-9A1]
Length=346
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/331 (52%), Positives = 219/331 (67%), Gaps = 13/331 (3%)
Query 45 NSGREPADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGK 104
GR A+ DF P R E++AHCYRM GS HDA+D VQET LRAW+A+ F G+
Sbjct 12 GDGRSAAE---ADFETLFTPMRSEIMAHCYRMLGSAHDADDAVQETYLRAWRAFSDFEGR 68
Query 105 SSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDV--- 161
SS+RTWL+RIATN CLTALEGR RR +P+GLG+ +DP L ER E+ WLEP+PD
Sbjct 69 SSIRTWLYRIATNVCLTALEGRGRRAMPSGLGQERSDPRATLEERHEIPWLEPVPDAWLP 128
Query 162 -TDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVA 220
DDPA T+ + SVRLA +AALQHL P+QRA LL+++VLQW+S+E+ADA+G++T +
Sbjct 129 REDDPA---TVATGKSSVRLALIAALQHLPPKQRAALLMKEVLQWQSSEIADALGSTTAS 185
Query 221 VNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIW 280
VNS LQRAR+QL + P D + P + + LL RY A E DI +V+LFTA+A+W
Sbjct 186 VNSSLQRARAQLDKLSPREED-FAEPAESDKRQLLDRYARALEQKDIATIVQLFTADAVW 244
Query 281 EMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQL 339
EMPP+TGWYQG I LI QCPA PG++ + L NGQPA +Y+ + FQL
Sbjct 245 EMPPFTGWYQGPADIGALIDTQCPA-GPGELATVPLRGNGQPAFGVYILTPEGTWEAFQL 303
Query 340 HVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370
VLD++ + H F D LF FGL +L
Sbjct 304 QVLDISGGGIRHAATFFDLALFGAFGLSQTL 334
>gi|300785510|ref|YP_003765801.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis
mediterranei U32]
gi|299795024|gb|ADJ45399.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis
mediterranei U32]
gi|340526957|gb|AEK42162.1| RNA polymerase factor sigma-70 [Amycolatopsis mediterranei S699]
Length=317
Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/314 (53%), Positives = 211/314 (68%), Gaps = 10/314 (3%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF +EP+RRELLA+CYR+ GS+ +AE++VQ+ L AW+AY GF G+SSLRTWL+RIAT
Sbjct 10 DFGRLSEPFRRELLAYCYRVLGSIDEAEEVVQDVYLDAWRAYGGFEGRSSLRTWLYRIAT 69
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVE-RREVSWLEPLPDV--TDDPADPSTIVG 173
C ALE RRRPLP LG P A P LVE EV WL+P PD+ PADP+T+V
Sbjct 70 RACFKALEKSRRRPLPADLGAPEARPEARLVEPTSEVPWLQPAPDLLFATTPADPATVVV 129
Query 174 NRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQ 233
R ++RLA + ALQ L PRQRAVL+LRDVLQW++AEVA+ + +T AVNS LQRAR+Q+
Sbjct 130 QRHTMRLALIGALQQLPPRQRAVLILRDVLQWRTAEVAELLEMTTAAVNSALQRARAQV- 188
Query 234 TVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQ 293
P D L+ P P + LL RY+ AFE D+D+LV + T +A WEMPP + W++G
Sbjct 189 ---PLEEDDLTEPAEPRQRALLDRYVTAFETADVDQLVAVLTQDARWEMPPISTWFEGRD 245
Query 294 AIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGD-VHLPFQLHVLDMAADRVSHV 352
I+ + +Q P P + L++ ANGQPA A+Y R D P LHVL M A+ VS +
Sbjct 246 TILAFLARQMPIIGPAE--LVATAANGQPAFAVYARGHDGARRPHALHVLTMTAEGVSRI 303
Query 353 VAFLDTTLFPKFGL 366
VAF + LFP FGL
Sbjct 304 VAFHGSALFPLFGL 317
>gi|256395507|ref|YP_003117071.1| RNA polymerase factor sigma-70 [Catenulispora acidiphila DSM
44928]
gi|256361733|gb|ACU75230.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
Length=351
Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 170/325 (53%), Positives = 211/325 (65%), Gaps = 9/325 (2%)
Query 50 PADERRGD-FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLR 108
PA R D F EPYRRELL HCYRM GS+HDAEDLVQET LRAW+ Y+ F G+SSLR
Sbjct 21 PATPRDDDEFVRLVEPYRRELLVHCYRMLGSVHDAEDLVQETYLRAWRGYDRFEGRSSLR 80
Query 109 TWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPS--GELVERREVSWLEPLPDVTDDPA 166
WL+RIAT+ CLTALE R R+ LPTGLG P A+ + G EV WL+PLPD+ +
Sbjct 81 IWLYRIATSACLTALEHRSRKVLPTGLGGPDAEANRPGPTPGTGEVEWLQPLPDLPGN-- 138
Query 167 DPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQ 226
DP+ IV R+SVRLAF+AALQHLS +QRAVL+LRDV+ W +AEVAD + T+T+AVNS L+
Sbjct 139 DPAAIVAVRDSVRLAFIAALQHLSAKQRAVLILRDVMDWHAAEVADLLDTTTIAVNSALR 198
Query 227 RARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYT 286
RAR+QL+ PS D L+ PD P +L +Y AFE D+ LV L E + EMPP
Sbjct 199 RARAQLEKAAPS-DDELTEPDDPRRLAMLEQYTTAFENADVPGLVRLLRDEVVLEMPPNL 257
Query 287 GWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHL-PFQLHVLDMA 345
W++G + + + P M IS ANGQPAAA Y+ D +HVL M
Sbjct 258 FWFEGRGNVTRFLDTRVLGGRPFAMLRIS--ANGQPAAAGYLAGTDGRWHAHAIHVLTMT 315
Query 346 ADRVSHVVAFLDTTLFPKFGLPDSL 370
+SH+V+F D +LF FGLP L
Sbjct 316 VTGISHIVSFNDPSLFDGFGLPAVL 340
>gi|326384048|ref|ZP_08205731.1| RNA polymerase factor sigma-70 [Gordonia neofelifaecis NRRL B-59395]
gi|326197208|gb|EGD54399.1| RNA polymerase factor sigma-70 [Gordonia neofelifaecis NRRL B-59395]
Length=316
Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 155/315 (50%), Positives = 203/315 (65%), Gaps = 5/315 (1%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
+F A T R ELL HCY M GS DAED++QE LRAW+A+ GF +SS+RTW++RIAT
Sbjct 6 EFEAATSALRAELLVHCYHMLGSATDAEDVLQEVYLRAWRAFHGFEARSSVRTWMYRIAT 65
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRE 176
NTCL ALEG RRP+PTGLG ++DP ++ E+ WL+PLPD DP+ V E
Sbjct 66 NTCLNALEGAARRPMPTGLGTEASDPREPVIANNEILWLQPLPD--GALGDPAARVTASE 123
Query 177 SVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQL-QTV 235
SV LA VAA+Q L RQRA L++RDVL + +AE A+A+ + A NS L RAR + +
Sbjct 124 SVGLAMVAAMQELPARQRAALIMRDVLAFSAAETAEALDMTVAAANSALSRARKTVGEGT 183
Query 236 RPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAI 295
R R +A + + + + AAFE +DI +VE+ A+AIWEMPP+ GWY GA+ I
Sbjct 184 RRDG--RRAAELTEHEKRVWDEFCAAFERHDIPGVVEVLAADAIWEMPPFPGWYVGAEEI 241
Query 296 VTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHVVAF 355
L QCPA PGD++++ NG+PAA MYMR GDV FQL VL + RV+HV AF
Sbjct 242 GVLTDTQCPAARPGDIKMVKTTCNGRPAAGMYMRDGDVWRRFQLDVLSIVDGRVAHVGAF 301
Query 356 LDTTLFPKFGLPDSL 370
+ LF GLP++L
Sbjct 302 FEPALFTLAGLPETL 316
>gi|284033120|ref|YP_003383051.1| ECF subfamily RNA polymerase sigma-24 subunit [Kribbella flavida
DSM 17836]
gi|283812413|gb|ADB34252.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kribbella flavida
DSM 17836]
Length=314
Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 161/315 (52%), Positives = 206/315 (66%), Gaps = 10/315 (3%)
Query 55 RGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGF-AGKSSLRTWLHR 113
R DF T YRRELLAHCYRM GS+HDAEDLVQET LRAW++Y+ + G++SLRTWL+R
Sbjct 2 RTDFVDRTGSYRRELLAHCYRMLGSIHDAEDLVQETYLRAWRSYDAYDPGRASLRTWLYR 61
Query 114 IATNTCLTALEGRRRRPLPTGLGRPSADPSGEL-VERREVSWLEPLPDVTDDPADPSTIV 172
IATN CLTAL+ R RR LP+ LG P +DP G L + EV+WLEP PD+ +DP+ I
Sbjct 62 IATNACLTALDQRSRRALPSALGSPGSDPEGHLSADLPEVTWLEPWPDIAT--SDPAAIT 119
Query 173 GNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQL 232
+RES+RLA VAALQ+L RQR +LLLRDVL W ++EV++ G S AV+S ++RAR+QL
Sbjct 120 ESRESLRLALVAALQYLPARQRGILLLRDVLGWPASEVSELTGLSVPAVHSAVRRARAQL 179
Query 233 QTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGA 292
+ V P+ D A E Q LL RY AFE DI+ L+ L T +A WEMPP W+ G
Sbjct 180 ERVMPT-DDGPPALSDTEQQQLLNRYARAFETADIETLLRLLTVDATWEMPPVPDWFSGR 238
Query 293 QAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHV 352
+AI LI QC A + G R++ ANGQPA A+Y+ + L VL + ++
Sbjct 239 EAIGRLIVAQCGAMNGGG-RMVRTSANGQPAFALYVNG----RAYSLQVLTLTGAGIAKA 293
Query 353 VAFLDTTLFPKFGLP 367
F D +F FGLP
Sbjct 294 NDFHDLRVFAPFGLP 308
>gi|284029123|ref|YP_003379054.1| ECF subfamily RNA polymerase sigma-24 subunit [Kribbella flavida
DSM 17836]
gi|283808416|gb|ADB30255.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kribbella flavida
DSM 17836]
Length=335
Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 165/310 (54%), Positives = 197/310 (64%), Gaps = 4/310 (1%)
Query 63 EPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTA 122
E YRREL AHCYRMTGS+HDAEDLVQET LRAW+ GF G+SSLRTWL+RIATN CLTA
Sbjct 24 EGYRRELFAHCYRMTGSVHDAEDLVQETFLRAWRGSAGFDGRSSLRTWLYRIATNACLTA 83
Query 123 LEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPAD-PSTIVGNRESVRLA 181
L+ RRRR LP G G PS DP V+W+EPLPD + P +IV R+SVRLA
Sbjct 84 LDQRRRRFLPAGTGAPSNDPDEPPRPAESVAWVEPLPDALLRANETPESIVVERDSVRLA 143
Query 182 FVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAAD 241
VAALQ+L PRQRAVLLLR+VL W +AEVA+ +G S AV SLLQRAR ++ + P D
Sbjct 144 LVAALQYLQPRQRAVLLLREVLAWPAAEVAEVMGISVAAVKSLLQRARGRIAELEPEPED 203
Query 242 RLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQ 301
RL D P+AQ+LL RYI AFE D+ L L +A E+PP T W+QG Q + + +
Sbjct 204 RLQL-DDPQAQELLRRYITAFETADVAELGRLLCEDASIEVPPSTTWFQGIQVCLPYLGR 262
Query 302 QCPAYSPGDMRLISLIANGQPAAAMYMRAGDV-HLPFQLHVLDMAADRVSHVVAFLDTTL 360
G RL+ NGQPAAA Y R D + + V M A +S VV F D L
Sbjct 263 HV-LEDVGTWRLVGTEVNGQPAAAAYHREPDGRYTAAVVGVFTMTARGISRVVVFPDAGL 321
Query 361 FPKFGLPDSL 370
GLP +L
Sbjct 322 TAAAGLPAAL 331
>gi|256392827|ref|YP_003114391.1| RNA polymerase factor sigma-70 [Catenulispora acidiphila DSM
44928]
gi|256359053|gb|ACU72550.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
Length=355
Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 161/322 (50%), Positives = 201/322 (63%), Gaps = 7/322 (2%)
Query 49 EPADERRGD-FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSL 107
+PA R D F +PYRRELL HCYRM GS+HDAEDLVQET LRAW+ Y+ F G+SSL
Sbjct 20 DPAAPRDDDEFVRRADPYRRELLVHCYRMLGSVHDAEDLVQETFLRAWRGYDRFEGRSSL 79
Query 108 RTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGEL--VERREVSWLEPLPDVTDDP 165
R WL+RIAT+ CLTALE R RR LPTGLG P D L V EV WL+PLPD
Sbjct 80 RIWLYRIATSACLTALENRSRRVLPTGLGAPEKDAERPLLTVAGSEVQWLQPLPDAL--A 137
Query 166 ADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLL 225
+DP+ IV R+SVRLAF+AALQHLS +QRAVL+LRDV+ W +AEVAD + T+T+AVNS L
Sbjct 138 SDPAAIVAVRDSVRLAFIAALQHLSAKQRAVLILRDVMDWHAAEVADLLDTTTIAVNSAL 197
Query 226 QRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPY 285
+RAR+QL+ PS D L+ PD P +DLL +Y AFE D+ L+ L + + EMPP
Sbjct 198 RRARAQLEKAAPS-HDELTEPDDPRRRDLLHQYTTAFENADVPGLLRLLRDDVVLEMPPN 256
Query 286 TGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMA 345
W+ G A+ T + M + A + R G H + VL
Sbjct 257 LAWFDGRTAVGTFLGANVLGRRAFTMVTTAANGQAAAAGYLAGRDGRRH-AHAIQVLTAT 315
Query 346 ADRVSHVVAFLDTTLFPKFGLP 367
+ +SH+V+F D LF FGLP
Sbjct 316 SSGISHIVSFNDPGLFAAFGLP 337
>gi|284028516|ref|YP_003378447.1| ECF subfamily RNA polymerase sigma-24 subunit [Kribbella flavida
DSM 17836]
gi|283807809|gb|ADB29648.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kribbella flavida
DSM 17836]
Length=314
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/304 (51%), Positives = 197/304 (65%), Gaps = 7/304 (2%)
Query 65 YRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALE 124
YR LLAHCYRM GSLHDAED VQET LRAWK F G+SS++TWL+RIATN CL+AL+
Sbjct 10 YRSGLLAHCYRMLGSLHDAEDAVQETYLRAWKGMAAFEGRSSVKTWLYRIATNVCLSALQ 69
Query 125 GRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVA 184
RR +P+ LG P DP + E SWLEP PD+ DP+ +VGNR+++RLA VA
Sbjct 70 HSSRRVIPSALGAPGNDPDNLEAQALETSWLEPWPDLL----DPALVVGNRQTLRLAMVA 125
Query 185 ALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLS 244
ALQHL RQRAVL+LR+VL W +AEVAD + T+T AVNS LQRAR++L + P A ++ S
Sbjct 126 ALQHLPARQRAVLILREVLAWPAAEVADLLDTTTAAVNSALQRARAELARLSP-AEEQFS 184
Query 245 APDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCP 304
PD P + LL +Y AFE D+ L L TA+ WEMPP W+ G ++ L+ + P
Sbjct 185 EPDEPVRRALLDQYAVAFEQGDLVALEGLLTADTRWEMPPIPTWFSGRDDVLRLLAAKLP 244
Query 305 AYSPGDMRLISLIANGQPAAAMYMRAGDVHL-PFQLHVLDMAADRVSHVVAFLDTTLFPK 363
G ++ ANGQPA A+Y+R D + + VL++ +S V+AF LFP
Sbjct 245 P-GAGKRLMVETGANGQPAFAVYLRGRDGAFHGYAIQVLELNKAGISGVLAFHRPDLFPL 303
Query 364 FGLP 367
FGLP
Sbjct 304 FGLP 307
>gi|256392324|ref|YP_003113888.1| RNA polymerase factor sigma-70 [Catenulispora acidiphila DSM
44928]
gi|256358550|gb|ACU72047.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
Length=363
Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 157/321 (49%), Positives = 209/321 (66%), Gaps = 13/321 (4%)
Query 57 DFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIAT 116
DF +P+R E+LAHCYRM GS+HDAEDLVQET LRAW++YEGF G++SLRTWL+RIAT
Sbjct 37 DFVRLADPFRPEILAHCYRMLGSIHDAEDLVQETYLRAWRSYEGFEGRASLRTWLYRIAT 96
Query 117 NTCLTALEGRRRRPLPTGLGRPSADPSGELVE-RREVSWLEPLPDVTDDP-------ADP 168
N CLTALE R RRPLP G+G P DP G+L E++WL+P PDV D ADP
Sbjct 97 NACLTALEHRARRPLPAGIGTPHTDPEGDLSAIPPEITWLQPFPDVLLDTGVSAAAGADP 156
Query 169 STIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRA 228
+++V R +RLA VAALQ+L PRQRAVL+LRDVL W+SAEVA + + AVNSLL+RA
Sbjct 157 ASVVAARSGLRLALVAALQYLPPRQRAVLILRDVLGWRSAEVAALLDLTVAAVNSLLKRA 216
Query 229 RSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGW 288
R++L V P D ++ P E +++L R+ AF D+D L++L T +A++EMPP W
Sbjct 217 RARLAEVAPDVED-VAEPTQAEQREILDRWAKAFVEADVDTLMKLLTEDAVYEMPPQPMW 275
Query 289 YQGAQAIVTLIHQQCPAYSPGDMR-LISLIANGQPAAAMYMRAGDVHLPFQ-LHVLDMAA 346
++GA + L+ + + G R +I + ANGQPA A+Y D L + + VL +
Sbjct 276 FRGAPFLRRLLTFRLGMH--GKYRKMIPIRANGQPAFAVYSGDDDRLLAAESVQVLTLRG 333
Query 347 DRVSHVVAFLDTTLFPKFGLP 367
+V+ V F L G P
Sbjct 334 GKVARVTTFRTPGLVAVAGFP 354
>gi|291301754|ref|YP_003513032.1| ECF subfamily RNA polymerase sigma-24 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290570974|gb|ADD43939.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Stackebrandtia
nassauensis DSM 44728]
Length=322
Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/315 (49%), Positives = 203/315 (65%), Gaps = 10/315 (3%)
Query 54 RRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHR 113
R +F+ EP R ELL CYRM GS+H+AED++Q+ LLRAW+A+ F +SSLRTWL+R
Sbjct 6 REDEFARRAEPLRPELLGFCYRMLGSVHEAEDVLQDALLRAWRAFPRFEDRSSLRTWLYR 65
Query 114 IATNTCLTALEGRRRRPLPTGLGRPSADPSGEL-VERREVSWLEPLPDVTDDPADPSTIV 172
I TN CL ALE +RRPLP+G G SADP + + +V WL+P PD DP+++V
Sbjct 66 ITTNACLRALERAKRRPLPSGWGDASADPEAPVPSQTSDVPWLQPFPD------DPASVV 119
Query 173 GNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQL 232
RES+RLA VAALQ L PR+R VL+LRDVL+W++ EVA+ + T+ AVNSLLQ ARSQL
Sbjct 120 EGRESMRLALVAALQLLPPRRRVVLILRDVLEWRAGEVAEFLDTTPAAVNSLLQHARSQL 179
Query 233 QTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGA 292
+ P A R P + ++ + RY AF D+D L +A+A+WEMPPY W+ G
Sbjct 180 RRANPKAV-REVGPLTARQREFVDRYAKAFAEADLDALTAALSADAVWEMPPYPTWFAGR 238
Query 293 QAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAGDVHLPFQLHVLDMAADRVSHV 352
+V + + G R + + ANGQPA A+Y+R GD + +HVLD+ V HV
Sbjct 239 DHVVRFLATKL--GDGGGRRFVRVSANGQPALALYLRDGDGFAAYAVHVLDVGEAGVEHV 296
Query 353 VAFLDTTLFPKFGLP 367
VAF+D LF FGLP
Sbjct 297 VAFMDPGLFAGFGLP 311
>gi|256391713|ref|YP_003113277.1| RNA polymerase factor sigma-70 [Catenulispora acidiphila DSM
44928]
gi|256357939|gb|ACU71436.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
Length=360
Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/321 (49%), Positives = 210/321 (66%), Gaps = 12/321 (3%)
Query 58 FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATN 117
F+ TEPYRREL AHCYRM GS+ DAEDLVQET LRAW+ Y+ F G+SS+RTWL++IATN
Sbjct 7 FATETEPYRRELFAHCYRMLGSVLDAEDLVQETYLRAWRHYDKFEGRSSVRTWLYQIATN 66
Query 118 TCLTALEGRR---RRPLPTGLGRPSADPSGELVE-RREVSWLEPLPD--VTDDPADPSTI 171
CLTAL RR RR LP+GLG P + ++E R V W++P+PD + + DP+ +
Sbjct 67 GCLTALAKRRDAERRVLPSGLGPPEDNTEAAVLEPDRRVRWVQPVPDALIAPESGDPAAV 126
Query 172 VGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQ 231
V RE VRLA VA+LQHL RQRAVL+LR+VL ++EVA+ + TST +V S LQRAR+
Sbjct 127 VAAREGVRLALVASLQHLPARQRAVLVLREVLALPASEVAEILQTSTASVKSALQRARAT 186
Query 232 LQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQG 291
L+ P A DR+S P +P+A+ +L RYI AFE D D L +L +A E PP W+QG
Sbjct 187 LREQAP-AEDRISEPKAPQARAVLERYIKAFENADADALQQLLVQDATIEAPPMRAWFQG 245
Query 292 AQAIVTLIHQQCPAYSPGDMRLISLI--ANGQPAAAMYMRAGDV-HLPFQLHVLDMAADR 348
Q V ++ PG R++ + ANG PAAA Y+R D + P+ + VLD+ DR
Sbjct 246 VQKCVPVLRHVMG--EPGQWRMLPITGGANGSPAAAGYLRDEDGRYRPYGVVVLDVVGDR 303
Query 349 VSHVVAFLDTTLFPKFGLPDS 369
++ + +F D L P FG ++
Sbjct 304 IARITSFGDPALLPVFGFENA 324
>gi|296140930|ref|YP_003648173.1| ECF subfamily RNA polymerase sigma-24 subunit [Tsukamurella paurometabola
DSM 20162]
gi|296029064|gb|ADG79834.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Tsukamurella
paurometabola DSM 20162]
Length=324
Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 161/316 (51%), Positives = 200/316 (64%), Gaps = 8/316 (2%)
Query 58 FSAHTEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATN 117
F T P R ELLAHCYRM+GS DAEDLVQET LRAWKA+ F G+SS+RTW++RIATN
Sbjct 8 FDELTAPLRAELLAHCYRMSGSASDAEDLVQETYLRAWKAFHRFEGRSSVRTWMYRIATN 67
Query 118 TCLTALEGRRRRPLPTGLGRPSADPSGELVERREVSWLEPLPDVTDDPADPSTIVGNRES 177
CLTA + RR LP GLG ADP + EV WL+PLPD DP + RES
Sbjct 68 VCLTA--SQTRRVLPVGLGGEPADPLEPVAPSTEVLWLQPLPDAA--LGDPGESIIVRES 123
Query 178 VRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQTVRP 237
+ LA VAALQ L +QRA L+LRDVL + +AE A A+ T+ + NS LQRAR+ + P
Sbjct 124 IGLAMVAALQGLPAKQRAALILRDVLDFSAAETAAALETTVASANSALQRARASIGAGAP 183
Query 238 SAADRLSAPDSPEAQDLLARYIAAFEAYDIDRLVELFTAEAIWEMPPYTGWYQGAQAIVT 297
+ + D E + + + AAFE +DID +V + A+A WEMPP GWY+GA+ I
Sbjct 184 QEGRKAAELDDRE-RAVWQEFCAAFERHDIDGVVRVLAADATWEMPPIPGWYRGAEEIGM 242
Query 298 LIHQQCPAYSPGDMRLISLIANGQPAAAMYMRAG--DVHLPFQLHVLDMAADRVSHVVAF 355
L QCPA + GD+R+I + NG P+AAMY+R G DV PFQL VL ++HV AF
Sbjct 243 LSRTQCPAQAAGDLRMIPTVCNGLPSAAMYLRDGGSDVWRPFQLDVLTFTDGALTHVSAF 302
Query 356 LD-TTLFPKFGLPDSL 370
LD LF GLP SL
Sbjct 303 LDPAELFVLAGLPASL 318
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 703601480950
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40