BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0201c Length=167 Score E Sequences producing significant alignments: (Bits) Value gi|15607342|ref|NP_214715.1| hypothetical protein Rv0201c [Mycob... 330 3e-89 gi|15839581|ref|NP_334618.1| hypothetical protein MT0211 [Mycoba... 327 3e-88 gi|340625238|ref|YP_004743690.1| hypothetical protein MCAN_02071... 324 3e-87 gi|183980472|ref|YP_001848763.1| hypothetical protein MMAR_0441 ... 233 5e-60 gi|296167418|ref|ZP_06849819.1| conserved hypothetical protein [... 233 7e-60 gi|118616820|ref|YP_905152.1| hypothetical protein MUL_1091 [Myc... 232 1e-59 gi|240172087|ref|ZP_04750746.1| hypothetical protein MkanA1_2241... 222 1e-56 gi|118464758|ref|YP_884095.1| hypothetical protein MAV_4974 [Myc... 222 1e-56 gi|254819015|ref|ZP_05224016.1| hypothetical protein MintA_03766... 216 7e-55 gi|342859343|ref|ZP_08715997.1| hypothetical protein MCOL_10703 ... 214 3e-54 gi|15828412|ref|NP_302675.1| hypothetical protein ML2616 [Mycoba... 190 6e-47 gi|333988804|ref|YP_004521418.1| hypothetical protein JDM601_016... 187 4e-46 gi|145221069|ref|YP_001131747.1| hypothetical protein Mflv_0465 ... 182 1e-44 gi|120401214|ref|YP_951043.1| hypothetical protein Mvan_0187 [My... 181 4e-44 gi|118473090|ref|YP_884655.1| hypothetical protein MSMEG_0240 [M... 167 5e-40 gi|126432764|ref|YP_001068455.1| hypothetical protein Mjls_0151 ... 165 2e-39 gi|108797141|ref|YP_637338.1| hypothetical protein Mmcs_0161 [My... 165 2e-39 gi|169631604|ref|YP_001705253.1| hypothetical protein MAB_4530 [... 128 3e-28 gi|336118181|ref|YP_004572950.1| putative DNA-binding protein [M... 85.5 2e-15 gi|343180418|dbj|BAK58757.1| phage transcription repressor [Lact... 39.3 0.20 gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxi... 37.4 0.68 gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 ... 36.6 1.3 gi|332678777|gb|AEE87906.1| DNA gyrase subunit A [Francisella cf... 36.6 1.3 gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella... 36.6 1.4 gi|149174410|ref|ZP_01853036.1| transciptional regulator [Planct... 35.8 1.9 gi|326333176|ref|ZP_08199423.1| LigA [Nocardioidaceae bacterium ... 35.8 2.2 gi|3114671|gb|AAC15841.1| ubiquitin-protein ligase E3 [Kluyverom... 35.8 2.2 gi|50311487|ref|XP_455768.1| hypothetical protein [Kluyveromyces... 35.8 2.2 gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein... 35.8 2.3 gi|339290156|gb|AEJ44266.1| transcriptional regulator of molybda... 35.0 3.2 gi|294792928|ref|ZP_06758074.1| toxin-antitoxin system, antitoxi... 35.0 3.4 gi|269797511|ref|YP_003311411.1| XRE family transcriptional regu... 35.0 3.5 gi|294795099|ref|ZP_06760234.1| toxin-antitoxin system, antitoxi... 35.0 3.6 gi|312887092|ref|ZP_07746696.1| DSBA oxidoreductase [Mucilaginib... 34.7 4.3 gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella ... 34.7 5.0 gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator... 34.7 5.0 gi|329130718|gb|AEB77795.1| olfactory receptor family C subfamil... 34.3 6.1 gi|320007401|gb|ADW02251.1| helix-turn-helix domain protein [Str... 34.3 6.1 gi|196249402|ref|ZP_03148100.1| flagellar hook-associated protei... 34.3 6.5 gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francise... 34.3 6.8 gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francise... 33.9 7.2 gi|119962969|ref|YP_947773.1| hypothetical protein AAur_2028 [Ar... 33.9 8.2 gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein... 33.9 8.3 gi|317121314|ref|YP_004101317.1| XRE family transcriptional regu... 33.9 8.7 gi|224826199|ref|ZP_03699302.1| multi-sensor signal transduction... 33.9 9.0 gi|330825702|ref|YP_004389005.1| hypothetical protein Alide2_314... 33.9 9.0 gi|319762447|ref|YP_004126384.1| hypothetical protein Alide_1744... 33.5 9.8 >gi|15607342|ref|NP_214715.1| hypothetical protein Rv0201c [Mycobacterium tuberculosis H37Rv] gi|31791379|ref|NP_853872.1| hypothetical protein Mb0207c [Mycobacterium bovis AF2122/97] gi|121636113|ref|YP_976336.1| hypothetical protein BCG_0238c [Mycobacterium bovis BCG str. Pasteur 1173P2] 63 more sequence titles Length=167 Score = 330 bits (847), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/167 (99%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 1 VTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPY 60 +TLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPY Sbjct 1 MTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPY 60 Query 61 GRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF 120 GRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF Sbjct 61 GRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF 120 Query 121 ASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 ASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS Sbjct 121 ASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 >gi|15839581|ref|NP_334618.1| hypothetical protein MT0211 [Mycobacterium tuberculosis CDC1551] gi|148821394|ref|YP_001286148.1| hypothetical protein TBFG_10203 [Mycobacterium tuberculosis F11] gi|253797123|ref|YP_003030124.1| hypothetical protein TBMG_00202 [Mycobacterium tuberculosis KZN 1435] 12 more sequence titles Length=165 Score = 327 bits (839), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 164/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGR 62 +AAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGR Sbjct 1 MAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGR 60 Query 63 TARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFAS 122 TARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFAS Sbjct 61 TARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFAS 120 Query 123 RIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 RIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS Sbjct 121 RIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 165 >gi|340625238|ref|YP_004743690.1| hypothetical protein MCAN_02071 [Mycobacterium canettii CIPT 140010059] gi|340003428|emb|CCC42548.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=167 Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 163/167 (98%), Positives = 164/167 (99%), Gaps = 0/167 (0%) Query 1 VTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPY 60 +TLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALES DIATWQRIAAALKRDPY Sbjct 1 MTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESADIATWQRIAAALKRDPY 60 Query 61 GRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF 120 GRTARQVEEVLEG PATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF Sbjct 61 GRTARQVEEVLEGAPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF 120 Query 121 ASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 ASRIGVTAQDLTAYLDG VSPSASLMIRMRRLSDRFVRAKSVRAADS Sbjct 121 ASRIGVTAQDLTAYLDGSVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 >gi|183980472|ref|YP_001848763.1| hypothetical protein MMAR_0441 [Mycobacterium marinum M] gi|183173798|gb|ACC38908.1| conserved hypothetical protein [Mycobacterium marinum M] Length=179 Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 120/157 (77%), Positives = 131/157 (84%), Gaps = 0/157 (0%) Query 11 PPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEV 70 PP +P E VD+ VEFWPT AIRSAL+SGDIATW+RIAAALKRDPYGRTARQVEEV Sbjct 15 PPHRPDGDNREHFVDQPVEFWPTAAIRSALQSGDIATWKRIAAALKRDPYGRTARQVEEV 74 Query 71 LEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQD 130 L G GI+ A WEVLDRAR HL+ANERAEVAR V LL+DRSGL +QEFASRIGV+ +D Sbjct 75 LGGARPIGISKALWEVLDRARAHLEANERAEVARHVKLLMDRSGLGQQEFASRIGVSPED 134 Query 131 LTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 L AYLDG VSPSASLMIRMRRLSDRFVR K+ RAADS Sbjct 135 LAAYLDGSVSPSASLMIRMRRLSDRFVRVKNTRAADS 171 >gi|296167418|ref|ZP_06849819.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897227|gb|EFG76832.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=173 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 121/172 (71%), Positives = 143/172 (84%), Gaps = 5/172 (2%) Query 1 VTLAAEPHPAPPQ----QPTVAWSE-PDVDRRVEFWPTVAIRSALESGDIATWQRIAAAL 55 +TLA + PAPPQ +P ++ PD ++ VEFWPT AIR+AL+ GDIATW+RIAAAL Sbjct 1 MTLAPDRRPAPPQRRAAEPRGREAQVPDPEQPVEFWPTSAIRAALQGGDIATWKRIAAAL 60 Query 56 KRDPYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGL 115 KRDPYGRTARQVEEVLEG GI+ A WEV++RARTHL+ANERAEVAR VGLL+DRSGL Sbjct 61 KRDPYGRTARQVEEVLEGTRPYGISKALWEVMERARTHLEANERAEVARHVGLLIDRSGL 120 Query 116 QRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 ++EFASRIGVTA++L AYLDG SPSASLMIRMRRLSDRFV+ KS R+A+S Sbjct 121 AQKEFASRIGVTAEELAAYLDGSTSPSASLMIRMRRLSDRFVKVKSSRSAES 172 >gi|118616820|ref|YP_905152.1| hypothetical protein MUL_1091 [Mycobacterium ulcerans Agy99] gi|118568930|gb|ABL03681.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=179 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/157 (76%), Positives = 130/157 (83%), Gaps = 0/157 (0%) Query 11 PPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEV 70 PP +P E VD+ VEFWPT IRSAL+SGDIATW+RIAAALKRDPYGRTARQVEEV Sbjct 15 PPHRPDGDNREHFVDQPVEFWPTATIRSALQSGDIATWKRIAAALKRDPYGRTARQVEEV 74 Query 71 LEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQD 130 L G GI+ A WEVLDRAR HL+ANERAEVAR V LL+DRSGL +QEFASRIGV+ +D Sbjct 75 LGGARPIGISKALWEVLDRARAHLEANERAEVARHVKLLMDRSGLGQQEFASRIGVSPED 134 Query 131 LTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 L AYLDG VSPSASLMIRMRRLSDRFVR K+ RAADS Sbjct 135 LAAYLDGSVSPSASLMIRMRRLSDRFVRVKNTRAADS 171 >gi|240172087|ref|ZP_04750746.1| hypothetical protein MkanA1_22415 [Mycobacterium kansasii ATCC 12478] Length=172 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/148 (77%), Positives = 125/148 (85%), Gaps = 0/148 (0%) Query 20 SEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGI 79 SEP D+ VEFW T AIR+ALE GDIATW+RIAAALKRDPYGRTARQVEEVL G+ GI Sbjct 24 SEPGTDQPVEFWSTAAIRAALEGGDIATWKRIAAALKRDPYGRTARQVEEVLGGVRPYGI 83 Query 80 ANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIV 139 + A EVLDRAR L+ANERAEVAR V LL+DRSGL +QEFASRIGV +DLTAYLDG V Sbjct 84 SKALSEVLDRARIQLEANERAEVARHVKLLMDRSGLGQQEFASRIGVQVEDLTAYLDGSV 143 Query 140 SPSASLMIRMRRLSDRFVRAKSVRAADS 167 SPSASLMIRMRRLSDRFVR ++ RAAD+ Sbjct 144 SPSASLMIRMRRLSDRFVRVRNTRAADT 171 >gi|118464758|ref|YP_884095.1| hypothetical protein MAV_4974 [Mycobacterium avium 104] gi|254777413|ref|ZP_05218929.1| hypothetical protein MaviaA2_22481 [Mycobacterium avium subsp. avium ATCC 25291] gi|118166045|gb|ABK66942.1| conserved hypothetical protein [Mycobacterium avium 104] Length=179 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/169 (69%), Positives = 136/169 (81%), Gaps = 5/169 (2%) Query 4 AAEPH-PAPPQQPTVAWSE----PDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRD 58 A+ PH PAP Q PD+D+ VEFWPT AIRSAL+SGDIATW+RIA ALKRD Sbjct 10 ASPPHRPAPGDQRNRGGGPSAPLPDLDQPVEFWPTAAIRSALQSGDIATWKRIAGALKRD 69 Query 59 PYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQ 118 PYGRTARQVEEVL+G GIA A WEVL+RAR HL+ANERAEVAR V LL+DRSGL +Q Sbjct 70 PYGRTARQVEEVLDGTRPYGIAKALWEVLERARAHLEANERAEVARHVRLLIDRSGLGQQ 129 Query 119 EFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS 167 EFASRIGV+A++L +YLDG SP+A+LMIR+RRLSDRFV+ KS R+A+S Sbjct 130 EFASRIGVSAEELGSYLDGSTSPTAALMIRIRRLSDRFVKVKSARSAES 178 >gi|254819015|ref|ZP_05224016.1| hypothetical protein MintA_03766 [Mycobacterium intracellulare ATCC 13950] Length=182 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 108/146 (74%), Positives = 124/146 (85%), Gaps = 0/146 (0%) Query 22 PDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIAN 81 PD+D+ VEFWPT AIRSAL+ GDIATW+RIA ALKRDPYGRTARQVEEVL G GIA Sbjct 36 PDLDQPVEFWPTAAIRSALQGGDIATWKRIAGALKRDPYGRTARQVEEVLGGTRPYGIAK 95 Query 82 AFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSP 141 A WEVL+RARTHLDANERAEVAR V LL+DRSGL +QEFASRIGV+ ++L YLDG SP Sbjct 96 ALWEVLERARTHLDANERAEVARHVRLLIDRSGLAQQEFASRIGVSPEELGGYLDGSTSP 155 Query 142 SASLMIRMRRLSDRFVRAKSVRAADS 167 +A+LMIR+RRLSDRFV+ KS +A+S Sbjct 156 TAALMIRIRRLSDRFVKVKSGPSAES 181 >gi|342859343|ref|ZP_08715997.1| hypothetical protein MCOL_10703 [Mycobacterium colombiense CECT 3035] gi|342133584|gb|EGT86787.1| hypothetical protein MCOL_10703 [Mycobacterium colombiense CECT 3035] Length=141 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 106/140 (76%), Positives = 121/140 (87%), Gaps = 0/140 (0%) Query 28 VEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVL 87 +EFWPT AIRSAL+ GDIATW+RIA ALKRDPYGRTARQVEEVLEG GIA A WEVL Sbjct 1 MEFWPTAAIRSALQGGDIATWKRIAGALKRDPYGRTARQVEEVLEGTRPYGIAKALWEVL 60 Query 88 DRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMI 147 +RARTHL+ANERAEVAR V LL+DRSGL QEFASRIGVTA++L YLDG SP+A+LMI Sbjct 61 ERARTHLEANERAEVARHVRLLIDRSGLAPQEFASRIGVTAEELDGYLDGSTSPTAALMI 120 Query 148 RMRRLSDRFVRAKSVRAADS 167 R+RRLSDRFV+ KS R+A++ Sbjct 121 RIRRLSDRFVKVKSARSAEA 140 >gi|15828412|ref|NP_302675.1| hypothetical protein ML2616 [Mycobacterium leprae TN] gi|221230889|ref|YP_002504305.1| hypothetical protein MLBr_02616 [Mycobacterium leprae Br4923] gi|2104603|emb|CAB08811.1| unknown [Mycobacterium leprae] gi|13093842|emb|CAC32148.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933996|emb|CAR72716.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=170 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 96/145 (67%), Positives = 111/145 (77%), Gaps = 0/145 (0%) Query 23 DVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANA 82 D D+ VEFW T AIRSAL +G I W+ I AA+K DPYGRTA QVEEVLEG GI A Sbjct 25 DPDQPVEFWSTAAIRSALHAGSIEIWKLITAAVKHDPYGRTAHQVEEVLEGTRPYGICKA 84 Query 83 FWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPS 142 EVL RARTHL+ NERAEVAR V LL+DRSGL QEFASRIGV + L +YLDG SPS Sbjct 85 LGEVLQRARTHLEINERAEVARHVRLLIDRSGLGHQEFASRIGVAPEGLASYLDGSTSPS 144 Query 143 ASLMIRMRRLSDRFVRAKSVRAADS 167 A+LM+RMRR+SDRFV+ K+ R+A+S Sbjct 145 AALMVRMRRVSDRFVKVKAARSANS 169 >gi|333988804|ref|YP_004521418.1| hypothetical protein JDM601_0164 [Mycobacterium sp. JDM601] gi|333484772|gb|AEF34164.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=163 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 105/166 (64%), Positives = 121/166 (73%), Gaps = 5/166 (3%) Query 1 VTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPY 60 +TLA + AP QP + S DR VEFW T AIR+AL++GDIATWQ I ALKRDPY Sbjct 1 MTLAPDRRRAP--QPPRSGS---TDRPVEFWSTSAIRAALQTGDIATWQLIVVALKRDPY 55 Query 61 GRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEF 120 GRTARQVEEVL G GI+ A EVL RAR HL+ANERAEVAR V +L++RSGL ++EF Sbjct 56 GRTARQVEEVLAGTGPYGISKALSEVLTRARAHLEANERAEVARHVRVLIERSGLSQEEF 115 Query 121 ASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAAD 166 SR GV A L YLDG VSP ASLMIRMRRLSDRFV+ ++ A D Sbjct 116 CSRAGVPADTLREYLDGTVSPPASLMIRMRRLSDRFVKLQTRGAPD 161 >gi|145221069|ref|YP_001131747.1| hypothetical protein Mflv_0465 [Mycobacterium gilvum PYR-GCK] gi|315441960|ref|YP_004074839.1| hypothetical protein Mspyr1_02900 [Mycobacterium sp. Spyr1] gi|145213555|gb|ABP42959.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260263|gb|ADT97004.1| hypothetical protein Mspyr1_02900 [Mycobacterium sp. Spyr1] Length=168 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/142 (67%), Positives = 106/142 (75%), Gaps = 0/142 (0%) Query 22 PDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIAN 81 P R VEFWPT AIR+ALES D++ WQRI A+KRDPYGRTARQVEEVLE G++ Sbjct 24 PADTRPVEFWPTAAIRAALESDDLSVWQRIVVAIKRDPYGRTARQVEEVLETARPYGVSK 83 Query 82 AFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSP 141 A EVL R R HL+ANE AEVAR V LLL+RSGL QEFASRIGV A D YL G VSP Sbjct 84 AMAEVLTRTREHLEANECAEVARHVRLLLERSGLGEQEFASRIGVPADDFATYLQGSVSP 143 Query 142 SASLMIRMRRLSDRFVRAKSVR 163 +ASLMIRM RLSDRF R ++ R Sbjct 144 AASLMIRMGRLSDRFARMRAQR 165 >gi|120401214|ref|YP_951043.1| hypothetical protein Mvan_0187 [Mycobacterium vanbaalenii PYR-1] gi|119954032|gb|ABM11037.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=164 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/145 (66%), Positives = 107/145 (74%), Gaps = 0/145 (0%) Query 22 PDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIAN 81 P DR VEFWPT AIR+ALE+ D+A WQRI A+KRDP+GRTARQVEEVLE G++ Sbjct 20 PADDRPVEFWPTAAIRAALENDDLAVWQRIVVAIKRDPFGRTARQVEEVLETARPYGVSR 79 Query 82 AFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSP 141 A EVL R R HL+ANE AEVAR V LLL+RSGL EFASRIGV A D AYL G VSP Sbjct 80 AMSEVLTRTREHLEANECAEVARHVHLLLERSGLGEHEFASRIGVPADDFAAYLRGSVSP 139 Query 142 SASLMIRMRRLSDRFVRAKSVRAAD 166 ASLMIRM RLSDRF + ++ R D Sbjct 140 PASLMIRMGRLSDRFAKMRAQRPRD 164 >gi|118473090|ref|YP_884655.1| hypothetical protein MSMEG_0240 [Mycobacterium smegmatis str. MC2 155] gi|118174377|gb|ABK75273.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=202 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 83/141 (59%), Positives = 106/141 (76%), Gaps = 0/141 (0%) Query 25 DRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFW 84 DR VE+WPT AIR+ALE+ D+ WQRI AA+KRDPYGRTARQVEEVLE G++ A Sbjct 61 DRPVEYWPTAAIRAALETDDLTVWQRIVAAIKRDPYGRTARQVEEVLETARPYGVSKALS 120 Query 85 EVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSAS 144 EVL R R HL+A+ERAEVA+Q+ +L RS L EFASR+GV+ ++ YL+G VSP AS Sbjct 121 EVLVRTRDHLEASERAEVAKQIQAMLRRSKLAPPEFASRVGVSNEEFATYLEGSVSPRAS 180 Query 145 LMIRMRRLSDRFVRAKSVRAA 165 L++RM+RLSDRF + + R+ Sbjct 181 LLLRMQRLSDRFAKIAAQRSG 201 >gi|126432764|ref|YP_001068455.1| hypothetical protein Mjls_0151 [Mycobacterium sp. JLS] gi|126232564|gb|ABN95964.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=176 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/142 (61%), Positives = 101/142 (72%), Gaps = 0/142 (0%) Query 25 DRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFW 84 DR VEFW T AIR ALE+ D+ WQRI A+KRDPYGRTARQVEEVLE G++ A Sbjct 33 DRPVEFWSTAAIRDALETDDLTVWQRIVTAIKRDPYGRTARQVEEVLEKAKPYGVSKALA 92 Query 85 EVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSAS 144 EVL R R + A ERAEV V LLL+RSGL EFASRIGV + +Y+DG VSPSAS Sbjct 93 EVLVRTREQMAAAERAEVGHHVQLLLNRSGLGAPEFASRIGVEVDEFQSYIDGEVSPSAS 152 Query 145 LMIRMRRLSDRFVRAKSVRAAD 166 LMIRM RLS+RF + ++ RA + Sbjct 153 LMIRMGRLSERFAKIRAQRANN 174 >gi|108797141|ref|YP_637338.1| hypothetical protein Mmcs_0161 [Mycobacterium sp. MCS] gi|119866226|ref|YP_936178.1| hypothetical protein Mkms_0170 [Mycobacterium sp. KMS] gi|108767560|gb|ABG06282.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692315|gb|ABL89388.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=176 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/142 (61%), Positives = 101/142 (72%), Gaps = 0/142 (0%) Query 25 DRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFW 84 DR VEFW T AIR ALE+ D+ WQRI A+KRDPYGRTARQVEEVLE G++ A Sbjct 33 DRPVEFWSTAAIRDALETDDLTVWQRIVTAIKRDPYGRTARQVEEVLEKAKPYGVSKALA 92 Query 85 EVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSAS 144 EVL R R + A ERAEV V LLL+RSGL EFASRIGV + +Y+DG VSPSAS Sbjct 93 EVLVRTREQMAAAERAEVGHHVQLLLNRSGLGAPEFASRIGVGVDEFQSYIDGEVSPSAS 152 Query 145 LMIRMRRLSDRFVRAKSVRAAD 166 LMIRM RLS+RF + ++ RA + Sbjct 153 LMIRMGRLSERFAKIRAQRANN 174 >gi|169631604|ref|YP_001705253.1| hypothetical protein MAB_4530 [Mycobacterium abscessus ATCC 19977] gi|169243571|emb|CAM64599.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=173 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/136 (53%), Positives = 92/136 (68%), Gaps = 0/136 (0%) Query 25 DRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFW 84 D+ V W T I AL+SGD++ WQ I ALKRDP+GRTARQVEEV+ GI+ A Sbjct 35 DKPVTHWTTAEILGALQSGDLSDWQAIVHALKRDPFGRTARQVEEVVSADELYGISTALQ 94 Query 85 EVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSAS 144 EVL RAR L A ER E A ++ LL + SGL+ EFASRIGV+ +L+AYL G PS + Sbjct 95 EVLIRARDDLAAAERREAANEINLLFEASGLREAEFASRIGVSGSELSAYLAGSTIPSVA 154 Query 145 LMIRMRRLSDRFVRAK 160 +++RMRR++ RF R + Sbjct 155 MLVRMRRVARRFGRTR 170 >gi|336118181|ref|YP_004572950.1| putative DNA-binding protein [Microlunatus phosphovorus NM-1] gi|334685962|dbj|BAK35547.1| putative DNA-binding protein [Microlunatus phosphovorus NM-1] Length=149 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/127 (39%), Positives = 74/127 (59%), Gaps = 0/127 (0%) Query 28 VEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVL 87 VE W + +A++ G +A W+RI AA++ DPYG A + EVLE G+ A + Sbjct 16 VENWGFEGLLAAVDRGSLAEWRRIIAAVRADPYGDVAETLAEVLELAQDPGVVAAMRLAV 75 Query 88 DRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMI 147 + AR +R VA ++ L+D+SGL + FA RIG + L YL G V+PSA++++ Sbjct 76 EHAREDSVERDRRIVASRMSELVDKSGLDQGTFARRIGTSRTRLNTYLSGKVTPSAAVLV 135 Query 148 RMRRLSD 154 R RL+D Sbjct 136 RAERLAD 142 >gi|343180418|dbj|BAK58757.1| phage transcription repressor [Lactococcus garvieae ATCC 49156] gi|343182387|dbj|BAK60725.1| phage transcription repressor [Lactococcus garvieae Lg2] Length=117 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/57 (34%), Positives = 36/57 (64%), Gaps = 1/57 (1%) Query 94 LDANE-RAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRM 149 +D E RA +A + L SG+++++FAS+IG+ L+ YL+ ++PS ++ +M Sbjct 1 MDTQEHRAIIAANIKKYLQMSGIKQKDFASKIGIVPSTLSDYLNMRITPSQGVIQKM 57 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length=164 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 16/44 (37%), Positives = 28/44 (64%), Gaps = 0/44 (0%) Query 111 DRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSD 154 +RSG++R+E A ++G+T Q T Y G P S +I++ ++ D Sbjct 21 ERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFD 64 >gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp. novicida GA99-3549] gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549] Length=868 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 43/170 (26%), Positives = 75/170 (45%), Gaps = 29/170 (17%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAA----LKRD 58 + A P PA ++ +A S W ++S LE D+ +++ A ++ D Sbjct 397 IKASPSPADAKESMLARS----------WNGSMVKSMLEGVDVKMYRKETLASHYGIQVD 446 Query 59 P-YGRTARQVEEVLE-------GIPATGIANAFWEVLDRARTHL----DANERAEVAR-Q 105 Y T Q + +L G+ I N F E++DR + + D NE V + + Sbjct 447 SSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYLISILSDINELIRVVKDE 506 Query 106 VGLLLDRSGLQRQE--FASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLS 153 + + D G QR+ SR+ +T +DL A D +V+ S ++ + LS Sbjct 507 LVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGYVKTQPLS 556 >gi|332678777|gb|AEE87906.1| DNA gyrase subunit A [Francisella cf. novicida Fx1] Length=868 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 43/170 (26%), Positives = 75/170 (45%), Gaps = 29/170 (17%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAA----LKRD 58 + A P PA ++ +A S W ++S LE D+ +++ A ++ D Sbjct 397 IKASPSPADAKESMLARS----------WNGSMVKSMLEGVDVKMYRKETLASHYGIQVD 446 Query 59 P-YGRTARQVEEVLE-------GIPATGIANAFWEVLDRARTHL----DANERAEVAR-Q 105 Y T Q + +L G+ I N F E++DR + + D NE V + + Sbjct 447 SSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYLISILSDINELIRVVKDE 506 Query 106 VGLLLDRSGLQRQE--FASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLS 153 + + D G QR+ SR+ +T +DL A D +V+ S ++ + LS Sbjct 507 LVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGYVKTQPLS 556 >gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112] gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG] gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548] gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112] gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548] gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG] Length=868 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 43/170 (26%), Positives = 75/170 (45%), Gaps = 29/170 (17%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAA----LKRD 58 + A P PA ++ +A S W ++S LE D+ +++ A ++ D Sbjct 397 IKASPSPADAKESMLARS----------WNGSMVKSMLEGVDVKMYRKETLASHYGIQVD 446 Query 59 P-YGRTARQVEEVLE-------GIPATGIANAFWEVLDRARTHL----DANERAEVAR-Q 105 Y T Q + +L G+ I N F E++DR + + D NE V + + Sbjct 447 SSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYLISILSDINELIRVVKDE 506 Query 106 VGLLLDRSGLQRQE--FASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLS 153 + + D G QR+ SR+ +T +DL A D +V+ S ++ + LS Sbjct 507 LVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGYVKTQPLS 556 >gi|149174410|ref|ZP_01853036.1| transciptional regulator [Planctomyces maris DSM 8797] gi|148846520|gb|EDL60857.1| transciptional regulator [Planctomyces maris DSM 8797] Length=75 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/60 (37%), Positives = 32/60 (54%), Gaps = 1/60 (1%) Query 96 ANERAEVARQVGLL-LDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSD 154 A ERAE+ Q+ + + +Q AS +GVT Q + A G SPS +L +R+ R D Sbjct 3 ARERAELTNQIRRFRFEHDEMTQQMLASHVGVTRQTIIALESGKYSPSLALALRIARTFD 62 >gi|326333176|ref|ZP_08199423.1| LigA [Nocardioidaceae bacterium Broad-1] gi|325948820|gb|EGD40913.1| LigA [Nocardioidaceae bacterium Broad-1] Length=249 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/46 (37%), Positives = 29/46 (64%), Gaps = 0/46 (0%) Query 101 EVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLM 146 +V R V ++RSGL ++ A+R GV+A + ++G+VSPS + Sbjct 4 DVGRLVAECIERSGLSARQVAARAGVSASTVHRIVNGVVSPSVDTL 49 >gi|3114671|gb|AAC15841.1| ubiquitin-protein ligase E3 [Kluyveromyces lactis] Length=1941 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 24/95 (26%), Positives = 46/95 (49%), Gaps = 10/95 (10%) Query 14 QPTVAWSEPDVDRRVEFWP---TVAIRSALESGDIATW----QRIAAALKRDPYGRTARQ 66 +P + + +PDV+ R+ P + IR E GDI + Q + ++ D G Sbjct 1816 RPDLRFRQPDVELRINGGPFGGDIPIRLPTERGDIHDFFEFVQNMRGGMQGD--GADIPT 1873 Query 67 VEEVLEGIPATGIANAFWEVLDRARTHLDANERAE 101 E+++E + + N F+ DR R H + N++++ Sbjct 1874 TEDIIEQLQGNAM-NGFFGRADRNREHFELNDQSD 1907 >gi|50311487|ref|XP_455768.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|54042062|sp|O60014.2|UBR1_KLULA RecName: Full=E3 ubiquitin-protein ligase UBR1; AltName: Full=N-end-recognizing protein; AltName: Full=N-recognin-1 gi|49644904|emb|CAG98476.1| KLLA0F15334p [Kluyveromyces lactis] Length=1945 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 24/95 (26%), Positives = 46/95 (49%), Gaps = 10/95 (10%) Query 14 QPTVAWSEPDVDRRVEFWP---TVAIRSALESGDIATW----QRIAAALKRDPYGRTARQ 66 +P + + +PDV+ R+ P + IR E GDI + Q + ++ D G Sbjct 1816 RPDLRFRQPDVELRINGGPFGGDIPIRLPTERGDIHDFFEFVQNMRGGMQGD--GADIPT 1873 Query 67 VEEVLEGIPATGIANAFWEVLDRARTHLDANERAE 101 E+++E + + N F+ DR R H + N++++ Sbjct 1874 TEDIIEQLQGNAM-NGFFGRADRNREHFELNDQSD 1907 >gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4] gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4] Length=349 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/55 (31%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query 99 RAEVARQVGLLLDRS----GLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRM 149 + E ARQ+GL + + GL + A ++GV+AQ ++ Y G+ P + +++R+ Sbjct 4 KGEAARQIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDIPGSGVLLRL 58 >gi|339290156|gb|AEJ44266.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1] Length=371 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/51 (40%), Positives = 27/51 (53%), Gaps = 0/51 (0%) Query 99 RAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRM 149 R + V LL + +GL R E A R G+T Q L G VSPS + +R+ Sbjct 17 RMKFPNAVRLLREMAGLSRSELARRAGITPQALGLIEQGKVSPSTHVALRL 67 >gi|294792928|ref|ZP_06758074.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294455873|gb|EFG24237.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length=275 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/42 (36%), Positives = 26/42 (62%), Gaps = 0/42 (0%) Query 108 LLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRM 149 +LLD LQ+++ A IGV+A +T Y G+ PS +++ + Sbjct 27 ILLDEFQLQKKDLAKEIGVSAVAITKYTKGVTLPSFEVLVSI 68 >gi|269797511|ref|YP_003311411.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269094140|gb|ACZ24131.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length=265 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/48 (30%), Positives = 30/48 (63%), Gaps = 0/48 (0%) Query 99 RAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLM 146 ++E + ++ +L+ GLQ+++ A +GV+A +T Y G+ PS ++ Sbjct 4 KSEFSNRLEILIREFGLQKKQLAKELGVSAVAITKYAKGLSMPSFEII 51 >gi|294795099|ref|ZP_06760234.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454461|gb|EFG22835.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length=265 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 14/48 (30%), Positives = 30/48 (63%), Gaps = 0/48 (0%) Query 99 RAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLM 146 ++E + ++ +L+ GLQ+++ A +GV+A +T Y G+ PS ++ Sbjct 4 KSEFSNRLEILIREFGLQKKQLAKELGVSAVAITKYAKGLSMPSFEII 51 >gi|312887092|ref|ZP_07746696.1| DSBA oxidoreductase [Mucilaginibacter paludis DSM 18603] gi|311300404|gb|EFQ77469.1| DSBA oxidoreductase [Mucilaginibacter paludis DSM 18603] Length=174 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/49 (39%), Positives = 28/49 (58%), Gaps = 5/49 (10%) Query 81 NAFWEVLD---RARTHLDANERAEVARQVGLLLDRSG--LQRQEFASRI 124 N FWE+ D + + +L NE AR++GL +DR G +Q Q S+I Sbjct 84 NKFWEMYDLLFQNQAYLSENELFSYARRIGLDMDRFGQDIQSQALISKI 132 >gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] 6 more sequence titles Length=868 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 42/170 (25%), Positives = 74/170 (44%), Gaps = 29/170 (17%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAA----LKRD 58 + A P PA ++ +A S W ++S LE D+ +++ A ++ D Sbjct 397 IKASPSPADAKESMLARS----------WNGSMVKSMLEGVDVKMYRKETLASHYGIQVD 446 Query 59 P-YGRTARQVEEVLE-------GIPATGIANAFWEVLDRARTHL----DANERAEVAR-Q 105 Y T Q + +L G+ I N F E++DR + + D E V + + Sbjct 447 SSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRVKYLISILSDIKELIRVVKDE 506 Query 106 VGLLLDRSGLQRQE--FASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLS 153 + + D G QR+ SR+ +T +DL A D +V+ S ++ + LS Sbjct 507 LVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGYVKTQPLS 556 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891 = ATCC 33934] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891 = ATCC 33934] gi|342816503|gb|EGU51400.1| DNA-binding transcriptional repressor PuuR [Vibrio orientalis CIP 102891 = ATCC 33934] Length=185 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/49 (33%), Positives = 29/49 (60%), Gaps = 0/49 (0%) Query 101 EVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRM 149 E+ + + LL GL ++E A R G+T +++ +G VSPS S + ++ Sbjct 5 EIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKI 53 >gi|329130718|gb|AEB77795.1| olfactory receptor family C subfamily 15 member 1 [Salmo salar] Length=845 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/57 (37%), Positives = 28/57 (50%), Gaps = 2/57 (3%) Query 48 WQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVAR 104 W + A + YGR A QV E E I TG+ AF+E L+RA D A+ + Sbjct 218 WTWVGAVAVDNDYGRLAIQVFE--EEIRGTGVCLAFFETLNRANLVRDVKRAADTVQ 272 >gi|320007401|gb|ADW02251.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length=294 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/52 (37%), Positives = 28/52 (54%), Gaps = 0/52 (0%) Query 103 ARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSD 154 RQ+ LL R+GL R EF SR+G AQ + ++ G P + + R+ D Sbjct 39 GRQLKLLRVRAGLDRVEFGSRVGYAAQSVASFEQGRRIPQPEFIDKADRVLD 90 >gi|196249402|ref|ZP_03148100.1| flagellar hook-associated protein FlgK [Geobacillus sp. G11MC16] gi|196211159|gb|EDY05920.1| flagellar hook-associated protein FlgK [Geobacillus sp. G11MC16] Length=528 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 39/160 (25%), Positives = 64/160 (40%), Gaps = 29/160 (18%) Query 4 AAEPHPAP-------PQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALK 56 A P P P P Q V+R E++ + R E+ + W+ A A+ Sbjct 46 ATTPFPTPGLNRPNIPGQMGTGVEAASVERVREYFLDIQYRG--ENSKLGYWEARADAVA 103 Query 57 RDPYGRTARQVEEVLEGIPATGIA---NAFWEVLDRARTHLDANERAEVARQVGL----- 108 + +E+++ +G+A + FW+ L TH + V RQ GL Sbjct 104 K---------MEDIMNEPSDSGLAKTMDQFWQALQDLSTHPENEGARSVVRQRGLAVVET 154 Query 109 --LLDRSGLQ-RQEFASRIGVTAQDLTAYLDGIVSPSASL 145 L S Q R + ++IGVT + + LD I +A + Sbjct 155 FHYLSNSLTQIRTDIGTQIGVTVTKINSILDQISKLNAQI 194 >gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis WY96-3418] gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis WY96-3418] Length=868 Score = 34.3 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 42/170 (25%), Positives = 74/170 (44%), Gaps = 29/170 (17%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAA----LKRD 58 + A P PA ++ +A S W ++S LE D+ +++ A ++ D Sbjct 397 IKASPSPADAKESMLARS----------WNGSMVKSMLEGVDVKMYRKETLASHYGIQVD 446 Query 59 P-YGRTARQVEEVLE-------GIPATGIANAFWEVLDRARTHL----DANERAEVAR-Q 105 Y T Q + +L G+ I N F E++DR + + D E V + + Sbjct 447 SSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYLISILSDIKELIRVVKDE 506 Query 106 VGLLLDRSGLQRQE--FASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLS 153 + + D G QR+ SR+ +T +DL A D +V+ S ++ + LS Sbjct 507 LVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGYVKTQPLS 556 >gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] Length=868 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 42/170 (25%), Positives = 74/170 (44%), Gaps = 29/170 (17%) Query 3 LAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAA----LKRD 58 + A P PA ++ +A S W ++S LE D+ +++ A ++ D Sbjct 397 IKASPSPADAKESMLARS----------WNGSMVKSMLEGVDVKMYRKETLASHYGIQVD 446 Query 59 P-YGRTARQVEEVLE-------GIPATGIANAFWEVLDRARTHL----DANERAEVAR-Q 105 Y T Q + +L G+ I N F E++DR + + D E V + + Sbjct 447 SSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYLISILSDIKELIRVVKDE 506 Query 106 VGLLLDRSGLQRQE--FASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLS 153 + + D G QR+ SR+ +T +DL A D +V+ S ++ + LS Sbjct 507 LVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGYVKTQPLS 556 >gi|119962969|ref|YP_947773.1| hypothetical protein AAur_2028 [Arthrobacter aurescens TC1] gi|119949828|gb|ABM08739.1| conserved hypothetical protein [Arthrobacter aurescens TC1] Length=767 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 32/110 (30%), Positives = 47/110 (43%), Gaps = 11/110 (10%) Query 52 AAALKRDPYGRTARQVEEVLEGI---PATGIANAFWEVLDRARTHLDANERAEVARQVGL 108 A L D G R ++ +G+ P + + W A H D A R L Sbjct 581 CAGLDDDAAGAMRRAIDSAQDGLTLLPELPMDD--WHTALGAVAHSDQIHGAVAGRATRL 638 Query 109 LLDRSGLQRQEFASR------IGVTAQDLTAYLDGIVSPSASLMIRMRRL 152 LLD + + A+R I A + A+LDG++S A+L+I RRL Sbjct 639 LLDAGLVDGDDIAARLSRRLSIATPAPEAAAWLDGLLSGDATLLIHDRRL 688 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length=347 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 13/43 (31%), Positives = 26/43 (61%), Gaps = 0/43 (0%) Query 112 RSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSD 154 R GL ++ A +GV+ ++ Y G+++P + ++IR+ R D Sbjct 13 RQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALD 55 >gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter marianensis DSM 12885] Length=464 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 25/40 (63%), Gaps = 0/40 (0%) Query 112 RSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRR 151 R GL +QE A+R GVT Q ++A G +PS + +R+ R Sbjct 38 RLGLSQQELAARAGVTRQAVSAIEGGQAAPSLGVALRLAR 77 >gi|224826199|ref|ZP_03699302.1| multi-sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] gi|224601836|gb|EEG08016.1| multi-sensor signal transduction histidine kinase [Lutiella nitroferrum 2002] Length=702 Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 42/91 (47%), Gaps = 6/91 (6%) Query 24 VDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAF 83 + R +E W V + SAL+ G R A GR AR V++ ++ +P +G+ Sbjct 98 LSRSIESWFDVRVESALDRG--LELGRNALGYVLQDVGRKARVVQDDIDALPDSGLPAR- 154 Query 84 WEVLDRARTHLDANERAEVARQVGLLLDRSG 114 L+R R L NE A RQ LL SG Sbjct 155 ---LERLREQLGLNEVAIFNRQGQLLAFASG 182 >gi|330825702|ref|YP_004389005.1| hypothetical protein Alide2_3148 [Alicycliphilus denitrificans K601] gi|329311074|gb|AEB85489.1| hypothetical protein Alide2_3148 [Alicycliphilus denitrificans K601] Length=280 Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust. Identities = 24/51 (48%), Positives = 30/51 (59%), Gaps = 8/51 (15%) Query 33 TVAIRSALESGDIATWQRIAAALKRDPYGR-------TARQVEEVLEGIPA 76 T AIRSALE G A W AALKR P GR T+ ++ EV++G+ A Sbjct 220 TPAIRSALELGQ-AQWLFFDAALKRQPDGRGLEEVATTSERLLEVMDGLTA 269 >gi|319762447|ref|YP_004126384.1| hypothetical protein Alide_1744 [Alicycliphilus denitrificans BC] gi|317117008|gb|ADU99496.1| hypothetical protein Alide_1744 [Alicycliphilus denitrificans BC] Length=292 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 24/51 (48%), Positives = 30/51 (59%), Gaps = 8/51 (15%) Query 33 TVAIRSALESGDIATWQRIAAALKRDPYGR-------TARQVEEVLEGIPA 76 T AIRSALE G A W AALKR P GR T+ ++ EV++G+ A Sbjct 232 TPAIRSALELGQ-AQWLFFDAALKRQPDGRGLEEVATTSERLLEVMDGLTA 281 Lambda K H 0.319 0.131 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127548590676 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40