BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0209
Length=361
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607350|ref|NP_214723.1| hypothetical protein Rv0209 [Mycoba... 700 0.0
gi|31791387|ref|NP_853880.1| hypothetical protein Mb0215 [Mycoba... 699 0.0
gi|340625246|ref|YP_004743698.1| hypothetical protein MCAN_02151... 697 0.0
gi|289756274|ref|ZP_06515652.1| conserved hypothetical protein [... 696 0.0
gi|289760313|ref|ZP_06519691.1| conserved hypothetical protein [... 688 0.0
gi|289568112|ref|ZP_06448339.1| hypothetical protein TBJG_03244 ... 533 1e-149
gi|289441585|ref|ZP_06431329.1| conserved hypothetical protein [... 533 2e-149
gi|289748685|ref|ZP_06508063.1| hypothetical protein TBDG_00573 ... 387 2e-105
gi|342859335|ref|ZP_08715989.1| hypothetical protein MCOL_10663 ... 353 3e-95
gi|41409742|ref|NP_962578.1| hypothetical protein MAP3644 [Mycob... 336 3e-90
gi|254777404|ref|ZP_05218920.1| hypothetical protein MaviaA2_224... 334 2e-89
gi|118462452|ref|YP_884086.1| hypothetical protein MAV_4965 [Myc... 332 6e-89
gi|240168415|ref|ZP_04747074.1| hypothetical protein MkanA1_0383... 309 4e-82
gi|183980480|ref|YP_001848771.1| hypothetical protein MMAR_0449 ... 263 4e-68
gi|118616827|ref|YP_905159.1| hypothetical protein MUL_1099 [Myc... 262 7e-68
gi|296167432|ref|ZP_06849831.1| conserved hypothetical protein [... 237 2e-60
gi|108797154|ref|YP_637351.1| hypothetical protein Mmcs_0174 [My... 182 7e-44
gi|126432776|ref|YP_001068467.1| hypothetical protein Mjls_0163 ... 174 2e-41
gi|120401226|ref|YP_951055.1| hypothetical protein Mvan_0199 [My... 163 4e-38
gi|169631579|ref|YP_001705228.1| hypothetical protein MAB_4505c ... 162 6e-38
gi|254822118|ref|ZP_05227119.1| hypothetical protein MintA_19442... 161 2e-37
gi|315441972|ref|YP_004074851.1| hypothetical protein Mspyr1_030... 153 3e-35
gi|145221057|ref|YP_001131735.1| hypothetical protein Mflv_0453 ... 151 2e-34
gi|118467866|ref|YP_884668.1| hypothetical protein MSMEG_0253 [M... 139 7e-31
gi|333988812|ref|YP_004521426.1| hypothetical protein JDM601_017... 137 2e-30
gi|296167430|ref|ZP_06849830.1| conserved hypothetical protein [... 70.5 4e-10
gi|296395210|ref|YP_003660094.1| hypothetical protein Srot_2832 ... 66.2 7e-09
gi|317509186|ref|ZP_07966810.1| UbiD family decarboxylase [Segni... 61.6 2e-07
gi|254818289|ref|ZP_05223290.1| hypothetical protein MintA_00095... 55.5 1e-05
gi|262204296|ref|YP_003275504.1| hypothetical protein Gbro_4478 ... 51.2 3e-04
gi|300791057|ref|YP_003771348.1| isoniazid inducible gene protei... 47.8 0.003
gi|302531263|ref|ZP_07283605.1| isoniazid inducible protein IniC... 43.9 0.044
gi|291004777|ref|ZP_06562750.1| isoniazid inductible gene protei... 43.5 0.058
gi|134103688|ref|YP_001109349.1| isoniazid inductible gene prote... 43.5 0.062
gi|257057849|ref|YP_003135681.1| GTPase [Saccharomonospora virid... 42.4 0.13
gi|333921787|ref|YP_004495368.1| hypothetical protein AS9A_4134 ... 39.7 0.74
gi|343924439|ref|ZP_08763988.1| hypothetical protein GOALK_016_0... 38.9 1.2
gi|296138108|ref|YP_003645351.1| hypothetical protein Tpau_0369 ... 38.1 2.1
gi|54027455|ref|YP_121697.1| hypothetical protein nfa54810 [Noca... 38.1 2.5
gi|268597693|ref|ZP_06131860.1| LOW QUALITY PROTEIN: glutamate-a... 37.4 4.4
gi|331696084|ref|YP_004332323.1| von Willebrand factor type A [P... 37.0 5.8
gi|293398116|ref|ZP_06642321.1| glutamate-ammonia-ligase adenyly... 36.6 6.7
gi|317165454|gb|ADV08995.1| bifunctional glutamine-synthetase ad... 36.6 6.8
gi|240015008|ref|ZP_04721921.1| GlnE [Neisseria gonorrhoeae DGI1... 36.6 6.8
gi|59802079|ref|YP_208791.1| GlnE [Neisseria gonorrhoeae FA 1090... 36.6 6.8
gi|268593864|ref|ZP_06128031.1| glutamate-ammonia-ligase adenyly... 36.6 6.9
gi|194100010|ref|YP_002003149.1| bifunctional glutamine-syntheta... 36.6 6.9
gi|268682998|ref|ZP_06149860.1| glutamate-ammonia-ligase adenyly... 36.6 7.0
gi|302548025|ref|ZP_07300367.1| polyketide synthase [Streptomyce... 36.6 7.4
gi|154244371|ref|YP_001415329.1| GntR family transcriptional reg... 36.2 7.8
>gi|15607350|ref|NP_214723.1| hypothetical protein Rv0209 [Mycobacterium tuberculosis H37Rv]
gi|15839589|ref|NP_334626.1| hypothetical protein MT0219 [Mycobacterium tuberculosis CDC1551]
gi|148659973|ref|YP_001281496.1| hypothetical protein MRA_0217 [Mycobacterium tuberculosis H37Ra]
43 more sequence titles
Length=361
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/361 (100%), Positives = 361/361 (100%), Gaps = 0/361 (0%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV
Sbjct 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
Query 361 S 361
S
Sbjct 361 S 361
>gi|31791387|ref|NP_853880.1| hypothetical protein Mb0215 [Mycobacterium bovis AF2122/97]
gi|121636121|ref|YP_976344.1| hypothetical protein BCG_0246 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224988594|ref|YP_002643281.1| hypothetical protein JTY_0215 [Mycobacterium bovis BCG str. Tokyo
172]
18 more sequence titles
Length=361
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/361 (99%), Positives = 360/361 (99%), Gaps = 0/361 (0%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRA LRALAAHPDGFDALDRAV
Sbjct 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAALRALAAHPDGFDALDRAV 180
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
Query 361 S 361
S
Sbjct 361 S 361
>gi|340625246|ref|YP_004743698.1| hypothetical protein MCAN_02151 [Mycobacterium canettii CIPT
140010059]
gi|340003436|emb|CCC42556.1| hypothetical protein MCAN_02151 [Mycobacterium canettii CIPT
140010059]
Length=361
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/361 (99%), Positives = 360/361 (99%), Gaps = 0/361 (0%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTL+GVPMESMIGLLAVAALDDLDDTLRA LRALAAHPDGFDALDRAV
Sbjct 121 PIVMAQARCAQFSTLIGVPMESMIGLLAVAALDDLDDTLRAALRALAAHPDGFDALDRAV 180
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
Query 361 S 361
S
Sbjct 361 S 361
>gi|289756274|ref|ZP_06515652.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289696861|gb|EFD64290.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=361
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/361 (99%), Positives = 359/361 (99%), Gaps = 0/361 (0%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRA LRALAAHPDGFDALDRAV
Sbjct 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAALRALAAHPDGFDALDRAV 180
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWH YSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 301 GLDVGPLDDPAAHLPRAVRWHHYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
Query 361 S 361
S
Sbjct 361 S 361
>gi|289760313|ref|ZP_06519691.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289715877|gb|EFD79889.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=361
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/361 (99%), Positives = 356/361 (99%), Gaps = 0/361 (0%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVA AAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVANGAAAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRA LRALAAHPDGFDALDRAV
Sbjct 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAALRALAAHPDGFDALDRAV 180
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
Query 361 S 361
S
Sbjct 361 S 361
>gi|289568112|ref|ZP_06448339.1| hypothetical protein TBJG_03244 [Mycobacterium tuberculosis T17]
gi|289541865|gb|EFD45514.1| hypothetical protein TBJG_03244 [Mycobacterium tuberculosis T17]
Length=334
Score = 533 bits (1374), Expect = 1e-149, Method: Compositional matrix adjust.
Identities = 326/361 (91%), Positives = 326/361 (91%), Gaps = 35/361 (9%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 9 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 68
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 69 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 128
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLD
Sbjct 129 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLD------------------------ 164
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
TEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 165 -----------TEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 213
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 214 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 273
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 274 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 333
Query 361 S 361
S
Sbjct 334 S 334
>gi|289441585|ref|ZP_06431329.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289414504|gb|EFD11744.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=326
Score = 533 bits (1373), Expect = 2e-149, Method: Compositional matrix adjust.
Identities = 326/361 (91%), Positives = 326/361 (91%), Gaps = 35/361 (9%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLD
Sbjct 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLD------------------------ 156
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
TEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 157 -----------TEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 205
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 300
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV
Sbjct 206 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAV 265
Query 301 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 360
GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS
Sbjct 266 GLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRTCGADIARGSLRLWSLAGGMPLHRYRKS 325
Query 361 S 361
S
Sbjct 326 S 326
>gi|289748685|ref|ZP_06508063.1| hypothetical protein TBDG_00573 [Mycobacterium tuberculosis T92]
gi|289689272|gb|EFD56701.1| hypothetical protein TBDG_00573 [Mycobacterium tuberculosis T92]
Length=248
Score = 387 bits (993), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 244/279 (88%), Positives = 244/279 (88%), Gaps = 35/279 (12%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS
Sbjct 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG
Sbjct 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAG 120
Query 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAV 180
PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLD
Sbjct 121 PIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLD------------------------ 156
Query 181 AGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 240
TEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI
Sbjct 157 -----------TEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVI 205
Query 241 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEF 279
DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEF
Sbjct 206 DKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEF 244
>gi|342859335|ref|ZP_08715989.1| hypothetical protein MCOL_10663 [Mycobacterium colombiense CECT
3035]
gi|342133576|gb|EGT86779.1| hypothetical protein MCOL_10663 [Mycobacterium colombiense CECT
3035]
Length=364
Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 230/363 (64%), Positives = 262/363 (73%), Gaps = 18/363 (4%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQ FVDELARFA AD R+ AIA+R+A PLRVAVRGR GVGC TV RAL GAG
Sbjct 1 MRGQGHQSFVDELARFAAGHADPRLTAIARRSAAPLRVAVRGRRGVGCHTVRRALDGAGR 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIA---ATRRPVVAVLNKADLAGPLS 117
++G+ V + ++ D D VVYV EVVKPED +AIA A RPV+AVLNKADLAG LS
Sbjct 61 AAGIAV--EGPGSERDADAVVYVLTEVVKPEDTQAIAQDSAAGRPVLAVLNKADLAGSLS 118
Query 118 GA--GPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDA 175
G GPI A+ARC + S L+GVP+E M GLLAVAALDDLD L ALAAHP G
Sbjct 119 GRGDGPIAAARARCTELSALIGVPLEPMTGLLAVAALDDLDSAQWTALSALAAHP-GTAC 177
Query 176 LDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSG 235
D + A FLAA PVPTEVR RLLDTLDLFG AL +AAFR G RTPAQ+ LL R+SG
Sbjct 178 FDGSFAAFLAADAPVPTEVRRRLLDTLDLFGTALAVAAFRQG---RTPAQVLALLHRMSG 234
Query 236 VDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVD 295
VDAV+ + A G+E RY+R+LDAVAELEALAA + I FL DDTV+ARMAAAVD
Sbjct 235 VDAVLATIGALGAEARYQRVLDAVAELEALAAAGGRLAERISGFLSRDDTVVARMAAAVD 294
Query 296 VALAVGLDVG---PLD---DPAAHLPRAVRWHRYSLDN-GDMHRTCGADIARGSLRLWSL 348
+A A GL+ G LD DP+AHLPRAVRW RYS + ++HR CGADIARGSLRLWS
Sbjct 295 LAEAAGLEPGDPQHLDAHRDPSAHLPRAVRWQRYSRASASELHRACGADIARGSLRLWSQ 354
Query 349 AGG 351
A G
Sbjct 355 ACG 357
>gi|41409742|ref|NP_962578.1| hypothetical protein MAP3644 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398574|gb|AAS06194.1| hypothetical protein MAP_3644 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460050|gb|EGO38959.1| hypothetical protein MAPs_44320 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=364
Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 222/371 (60%), Positives = 256/371 (70%), Gaps = 26/371 (7%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFA + AD RV AIAQRAA PLRV VRGR GVG RT+ARAL AG
Sbjct 1 MRGQGHQIFVDELARFAAAEADPRVTAIAQRAAAPLRVVVRGRRGVGRRTLARALDRAGR 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATR---RPVVAVLNKADLAGPLS 117
++G+ VT A D+VV+VT EV KPED +AI+ R PV+AVL+KADL G LS
Sbjct 61 ATGIAVTTDA------ADVVVHVTAEVAKPEDTQAISTARAAGHPVLAVLSKADLVGSLS 114
Query 118 GA---GPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFD 174
G GPI A+ARCA S L+GVP+ IGLLAVAALDDL D L A LR LAA P
Sbjct 115 GRGGDGPIAAARARCADLSALIGVPIRPAIGLLAVAALDDLGDDLWAALRTLAADPAA-- 172
Query 175 ALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVS 234
LD ++ GFL A + VP R RLLDTLDLFG AL +AA R G PAQLRTLLRR+S
Sbjct 173 CLDGSITGFLGAGVDVPAAARERLLDTLDLFGTALAIAAIRRG---AGPAQLRTLLRRIS 229
Query 235 GVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAV 294
GVDAV+ ++ A G+EVRYRR+L AVAELEALA +G I FL DDTV+ARMAAA+
Sbjct 230 GVDAVLAEIGALGAEVRYRRVLGAVAELEALAVGGAALGERISGFLSRDDTVVARMAAAL 289
Query 295 DVALAVGLDVGPLD---DPAAHLPRAVRWHRYSLDNG-DMHRTCGADIARGSLRLWS--- 347
D+A + +V DP+ HL RAVRW RYS +G D+HR CGADIARGSLRLWS
Sbjct 290 DMAGDMAGEVAGETAPGDPSGHLARAVRWQRYSRASGSDLHRACGADIARGSLRLWSQAC 349
Query 348 --LAGGMPLHR 356
L G P+ R
Sbjct 350 ATLPGERPVER 360
>gi|254777404|ref|ZP_05218920.1| hypothetical protein MaviaA2_22436 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=368
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 218/359 (61%), Positives = 252/359 (71%), Gaps = 21/359 (5%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFA + AD RV AIAQRAA PLRV VRGR GVG RT+ARAL AG
Sbjct 1 MRGQGHQIFVDELARFAAAEADPRVTAIAQRAAAPLRVVVRGRRGVGRRTLARALDRAGR 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATR---RPVVAVLNKADLAGPLS 117
++G+ VT A D+VV+VT EV KPED +AI+ R PV+AVL+KADL G LS
Sbjct 61 ATGIAVTTDA------ADVVVHVTAEVAKPEDTQAISTARAAGHPVLAVLSKADLVGSLS 114
Query 118 GA---GPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFD 174
G GPI A+ARCA S L+GVP+ IGLLAVAALDDL D L A LR LAA P
Sbjct 115 GRGGDGPIAAARARCADLSALIGVPIRPAIGLLAVAALDDLGDDLWAALRTLAADPAA-- 172
Query 175 ALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVS 234
LD ++ GFL A + VP R RLLDTLDLFG AL +AA R G PAQLRT+LRR+S
Sbjct 173 CLDGSITGFLDAGVDVPAAARERLLDTLDLFGTALAIAAIRRG---AGPAQLRTMLRRIS 229
Query 235 GVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAV 294
GVDAV+ ++ A G+EVRYRR+L AVAELEALA +G I FL DDTV+ARMAAA+
Sbjct 230 GVDAVLAEIGALGAEVRYRRVLGAVAELEALAVGGAALGERISGFLSRDDTVVARMAAAL 289
Query 295 DVALAVGLDV---GPLDDPAAHLPRAVRWHRYSLDNG-DMHRTCGADIARGSLRLWSLA 349
D+A + +V DP+ HL RAVRW RYS +G D+HR CGADIARGSLRLWS A
Sbjct 290 DMAGDMAGEVAGEAAPGDPSGHLARAVRWQRYSRASGSDLHRACGADIARGSLRLWSQA 348
>gi|118462452|ref|YP_884086.1| hypothetical protein MAV_4965 [Mycobacterium avium 104]
gi|118163739|gb|ABK64636.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=368
Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 217/359 (61%), Positives = 251/359 (70%), Gaps = 21/359 (5%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDELARFA + AD RV AIAQRAA PLRV VRGR GVG RT+ARAL AG
Sbjct 1 MRGQGHQIFVDELARFAAAEADPRVTAIAQRAAAPLRVVVRGRRGVGRRTLARALDRAGR 60
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATR---RPVVAVLNKADLAGPLS 117
++G+ VT A D+VV+VT EV KPED +AI+ R PV+AVL+KADL G LS
Sbjct 61 ATGIAVTTDA------ADVVVHVTAEVAKPEDTQAISTARAAGHPVLAVLSKADLVGSLS 114
Query 118 GA---GPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFD 174
G GPI A+ARCA S L+GVP+ IGLLAVAALDDL D L A LR LAA P
Sbjct 115 GRGGDGPIAAARARCADLSALIGVPIRPAIGLLAVAALDDLGDDLWAALRTLAADPAA-- 172
Query 175 ALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVS 234
LD ++ GFL A + VP R RLLDTLDLFG AL +AA R G PAQLRT+LRR+S
Sbjct 173 CLDGSITGFLDAGVDVPAAARERLLDTLDLFGTALAIAAIRRG---AGPAQLRTMLRRIS 229
Query 235 GVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAV 294
GVDAV+ ++ A G+EVRYRR+L AVAELEALA +G I FL DD V+ARMAAA+
Sbjct 230 GVDAVLAEIGALGAEVRYRRVLGAVAELEALAVGGAALGERISGFLSRDDAVVARMAAAL 289
Query 295 DVALAVGLDV---GPLDDPAAHLPRAVRWHRYSLDNG-DMHRTCGADIARGSLRLWSLA 349
D+A + +V DP+ HL RAVRW RYS +G D+HR CGADIARGSLRLWS A
Sbjct 290 DMAGDMAGEVAGEAAPGDPSGHLARAVRWQRYSRASGSDLHRACGADIARGSLRLWSQA 348
>gi|240168415|ref|ZP_04747074.1| hypothetical protein MkanA1_03832 [Mycobacterium kansasii ATCC
12478]
Length=355
Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 195/360 (55%), Positives = 236/360 (66%), Gaps = 22/360 (6%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
M G+G+++F+DEL R A + DQRV IA R AEP RVAVRGRPG GCRTVA AL GAG
Sbjct 1 MTGRGYRLFLDELTRLAGRTGDQRVPPIAARVAEPPRVAVRGRPGAGCRTVAHALNGAG- 59
Query 61 SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATR---RPVVAVLNKADLAGPLS 117
+TV A +A S D+ +YV E +KPEDR+AIAA R +P+V VLNKADL+G
Sbjct 60 ---LTVVSSAFSA-SVADVQLYVLAEALKPEDRDAIAAVRDARQPLVIVLNKADLSG-FG 114
Query 118 GAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALD 177
GAGP+ AQ RCA FS L+G+P+ MIGLLA AA D LD+T LRALAAHP+G LD
Sbjct 115 GAGPMAAAQTRCAHFSALVGLPVVPMIGLLAAAAFDFLDETCWLALRALAAHPEGLTCLD 174
Query 178 RAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVD 237
+ GFLAA L V +RLRLL+ LDLFGIALG+AA R G PA++R LL R SGVD
Sbjct 175 GSFDGFLAAELTVSMPMRLRLLEALDLFGIALGVAAVRRG---AGPAEVRALLHRASGVD 231
Query 238 AVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVA 297
AV+ + AA RYRR+L+AV LEA+A + I L D+ VLARM+AA+D
Sbjct 232 AVVAQAMAARGPARYRRILEAVTALEAMAVADER----IARCLSGDNMVLARMSAALDAV 287
Query 298 LAVGLDVGPL--DDPAAHLPRAVRWHRYSLDNGD----MHRTCGADIARGSLRLWSLAGG 351
A+ L+ + DD AA L RAVRW + G + CGADI RGSLRLWS AGG
Sbjct 288 SALHLEPEDIATDDMAALLRRAVRWQYHRRSRGGTAARVDAACGADIVRGSLRLWSRAGG 347
>gi|183980480|ref|YP_001848771.1| hypothetical protein MMAR_0449 [Mycobacterium marinum M]
gi|183173806|gb|ACC38916.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=370
Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 196/365 (54%), Positives = 238/365 (66%), Gaps = 30/365 (8%)
Query 5 GHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGM 64
GHQ FVDEL A S+ADQR+ +IA+RAA PLRVAVRGR GVG T+ RAL GAGS++G+
Sbjct 4 GHQAFVDELTCLAASTADQRIRSIAERAARPLRVAVRGRRGVGRNTLVRALDGAGSAAGL 63
Query 65 TVTPQARAADSDVDLVVYVTVEVVKPEDREAIAA---TRRPVVAVL---NKADLAGPLSG 118
T + D+VVY EVVKPEDR IA T RPV+AVL +K D+ G +G
Sbjct 64 AAT----SGGDPADVVVYALAEVVKPEDRAGIAVLEPTERPVLAVLTMADKTDVFG-FAG 118
Query 119 AGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDR 178
AGP+ A RC STL GVP+E + LLAVAALDDLD LRALAAHP ALD
Sbjct 119 AGPMAGALQRCELLSTLAGVPVEPISALLAVAALDDLDGRSWYALRALAAHPAAGAALDG 178
Query 179 AVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDA 238
+ AGFL+A L VPT RLRLL++LDLFG+A+ + A R G +RT Q+R LLR++SG+DA
Sbjct 179 SHAGFLSADLGVPTGQRLRLLESLDLFGVAIAIEALRRG-AART--QVRALLRKISGIDA 235
Query 239 VIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVAL 298
V+ AAG+ VRY R+L+AVA LE LA ++ + EFL + VLARM+AA+D A
Sbjct 236 VVANAVAAGAGVRYGRVLEAVAALEVLAVADEQ----VSEFLAGEAAVLARMSAALDAAS 291
Query 299 AVGLD----VGPLDDPAAHLPRAVRWHRYSLDNG--------DMHRTCGADIARGSLRLW 346
A GLD P DDP A L RA+RW R+ G D+ R CGADI RGSLRLW
Sbjct 292 AWGLDPFGAAVPPDDPGAQLQRALRWRRHRSQRGPAAESPDSDLRRWCGADIVRGSLRLW 351
Query 347 SLAGG 351
S A G
Sbjct 352 SRAAG 356
>gi|118616827|ref|YP_905159.1| hypothetical protein MUL_1099 [Mycobacterium ulcerans Agy99]
gi|118568937|gb|ABL03688.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=376
Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 195/365 (54%), Positives = 238/365 (66%), Gaps = 30/365 (8%)
Query 5 GHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGM 64
GHQ+FVDEL A S+ADQR+ AIA+ AA PLRVAVRGR GVG T+ARAL GAGS++G+
Sbjct 10 GHQVFVDELTCLAASTADQRIRAIAEWAARPLRVAVRGRRGVGRNTLARALDGAGSAAGL 69
Query 65 TVTPQARAADSDVDLVVYVTVEVVKPEDREAIAA---TRRPVVAVL---NKADLAGPLSG 118
T + D+VVY EVVKPEDR IA T RPV+AVL +K D+ G +G
Sbjct 70 AAT----SGGDPADVVVYALAEVVKPEDRAGIAVLEPTERPVLAVLTMADKTDVVG-FAG 124
Query 119 AGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDR 178
A P+ A RC STL GVP+E + LLAVAALDDLD+ LRALAAHP ALD
Sbjct 125 AVPMAGALQRCELLSTLAGVPVEPISALLAVAALDDLDERSWCALRALAAHPAAGAALDG 184
Query 179 AVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDA 238
+ AGFL+A L VPT RLRLL++LDLFG+A+ + A R G +RT Q+R LLR++SG+DA
Sbjct 185 SHAGFLSADLGVPTGQRLRLLESLDLFGVAIAIEALRRG-AART--QVRALLRKISGIDA 241
Query 239 VIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVAL 298
V+ AAG+ VRY R+L+AVA LE LA ++ + EFL + VLARM+AA+D A
Sbjct 242 VVANAVAAGAGVRYGRVLEAVAALEVLAVADEQ----VSEFLAGEAAVLARMSAALDAAS 297
Query 299 AVGLD----VGPLDDPAAHLPRAVRWHRYSLDNG--------DMHRTCGADIARGSLRLW 346
GLD P DDP A L RA+RW R+ G D+ R CGADI RGSLRLW
Sbjct 298 TWGLDPFGAAVPPDDPGAQLQRALRWRRHRSQRGPGAESPDSDLRRWCGADIVRGSLRLW 357
Query 347 SLAGG 351
S A G
Sbjct 358 SRAAG 362
>gi|296167432|ref|ZP_06849831.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897180|gb|EFG76787.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=310
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 195/305 (64%), Positives = 218/305 (72%), Gaps = 14/305 (4%)
Query 55 LQGAGSSSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAG 114
L AG+ +G+ VT A VD+VV V EVVKPED EAIAA RPVVAVLNKADLAG
Sbjct 1 LDRAGAGAGIAVTT---ADGRGVDVVVQVITEVVKPEDAEAIAAAGRPVVAVLNKADLAG 57
Query 115 PLS-GAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGF 173
LS G GPI A+ARCA+ L G PM M GLLA AALDDLD L A LR LAAHP
Sbjct 58 SLSRGDGPIAAARARCAELGGLAGAPMLPMAGLLAAAALDDLDAPLWAGLRTLAAHPGAA 117
Query 174 DALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRV 233
ALD + AGFLAA PVP +VRLRLL TLDLFGIALG+AAFR G RT AQ+R LLRR
Sbjct 118 AALDGSFAGFLAADNPVPADVRLRLLQTLDLFGIALGVAAFRQG---RTAAQVRALLRRT 174
Query 234 SGVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAA 293
SGVDAV+ ++ AG+EVRY+R+LDAVAEL ALA E I FL DDTV+ARMAAA
Sbjct 175 SGVDAVLAQLAIAGAEVRYQRVLDAVAELAALAVGPGEPAERISAFLSHDDTVVARMAAA 234
Query 294 VDVALAVGLD---VGPLD---DPAAHLPRAVRWHRYSLDNG-DMHRTCGADIARGSLRLW 346
VD+A A GLD GP D DP+AHLPRAVRW RYS +G D+HR CGADIARG++RLW
Sbjct 235 VDLAEAAGLDPDASGPADWDRDPSAHLPRAVRWQRYSRASGNDLHRACGADIARGAMRLW 294
Query 347 SLAGG 351
S A G
Sbjct 295 SQACG 299
>gi|108797154|ref|YP_637351.1| hypothetical protein Mmcs_0174 [Mycobacterium sp. MCS]
gi|119866239|ref|YP_936191.1| hypothetical protein Mkms_0183 [Mycobacterium sp. KMS]
gi|108767573|gb|ABG06295.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692328|gb|ABL89401.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=336
Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 160/354 (46%), Positives = 191/354 (54%), Gaps = 38/354 (10%)
Query 2 RGQGHQIFV----DELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQG 57
R +G IFV D L RFA D V A+A R A PLRVAV GR GVG T+ARAL
Sbjct 10 RREGATIFVPDFDDVLTRFAQECGDAAVAAVAARLAAPLRVAVTGRAGVGRTTLARALAR 69
Query 58 AGSSSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRR---PVVAVLNKADLAG 114
G R A+ D+ V V E VKPED ++A R PVV V NKADL G
Sbjct 70 DGR----------RVAEHTPDVAVVVVAEAVKPEDVASVAGWRDADVPVVVVGNKADLTG 119
Query 115 PLSGAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFD 174
P+ P + + R + VP+ES++ LLAV +LDD +L A A
Sbjct 120 PIP---PDALRRYRSGEHGD---VPVESVVALLAVVSLDDDALGALQLLAAQPAEL---- 169
Query 175 ALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVS 234
R+ FL AA P+P +VR+RLL TL L G+ + A R G P L TLLR VS
Sbjct 170 ---RSANAFLDAAHPLPRDVRMRLLRTLGLRGVEHSVRALRDGA---DPHDLPTLLREVS 223
Query 235 GVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAV 294
G D V+D++ A + RY R+ A+AEL+ AA I FL DDDTVLA M AAV
Sbjct 224 GFDRVLDRLDALAAPARYDRIRAALAELQGRAAGDDRIAA----FLADDDTVLAVMTAAV 279
Query 295 DVALAVGLDVGPLDDPAAHLPRAVRWHRYSLDN-GDMHRTCGADIARGSLRLWS 347
DV A GL V P DD A HL RAV W YS +HR CGADIARGSLRL+
Sbjct 280 DVVQAAGLAVDPGDDAATHLRRAVWWRGYSRGPVSPLHRACGADIARGSLRLFE 333
>gi|126432776|ref|YP_001068467.1| hypothetical protein Mjls_0163 [Mycobacterium sp. JLS]
gi|126232576|gb|ABN95976.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=336
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 158/354 (45%), Positives = 188/354 (54%), Gaps = 38/354 (10%)
Query 2 RGQGHQIFV----DELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQG 57
R +G IFV D L RFA D V A+A R A PLRVAV GR GVG T+ARAL
Sbjct 10 RREGATIFVPDFDDVLTRFAQECGDAAVAAVAARLAAPLRVAVTGRAGVGRTTLARALAR 69
Query 58 AGSSSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAA---TRRPVVAVLNKADLAG 114
G R A+ D+ V V E VKPED ++A PVV V NKADL G
Sbjct 70 DGR----------RVAEHTPDVAVVVVAEAVKPEDVASVAGWCDADVPVVVVGNKADLTG 119
Query 115 PLSGAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFD 174
P+ + + R + V +ES++ LLAV +LDD +L A A
Sbjct 120 PIPSDA---LRRYRSGEHGD---VSVESVVALLAVVSLDDDALGALQLLAAQPAEL---- 169
Query 175 ALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVS 234
R+ FL AA P+P +VR RLL TL L G+A + A R G P L TLLR VS
Sbjct 170 ---RSANAFLDAAHPLPRDVRTRLLRTLGLRGVAHSVRALRDGA---DPHDLPTLLREVS 223
Query 235 GVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAV 294
G D V+D++ A + RY R+ A+AEL+ AA I FL DDDTVLA M AAV
Sbjct 224 GFDRVLDRLDALAAPARYDRIRAALAELQGRAAGDDRIAA----FLADDDTVLAVMTAAV 279
Query 295 DVALAVGLDVGPLDDPAAHLPRAVRWHRYSLDN-GDMHRTCGADIARGSLRLWS 347
DV A GL V P DD A HL RAV W YS +HR CGADIARGSLRL+
Sbjct 280 DVVQAAGLAVDPGDDAATHLRRAVWWRGYSRGPVSPLHRACGADIARGSLRLFE 333
>gi|120401226|ref|YP_951055.1| hypothetical protein Mvan_0199 [Mycobacterium vanbaalenii PYR-1]
gi|119954044|gb|ABM11049.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=302
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 146/319 (46%), Positives = 175/319 (55%), Gaps = 23/319 (7%)
Query 28 IAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVDLVVYVTVEV 87
+ +R P RVAVRGR GVG VA A AG + D+ V VT E
Sbjct 1 MEKRLRAPHRVAVRGRRGVGRNAVAWAFTAAGVRVVTDI--------GSADIQVVVTAET 52
Query 88 VKPEDREAIAATRRPVVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIGLL 147
+KPEDR A+ P + VLNKADLAG G GP+ A R AQ + GVP+ MI L
Sbjct 53 LKPEDR-AMLRVSIPTLVVLNKADLAGREPG-GPLAAATRRAAQIAAAAGVPVVPMIAHL 110
Query 148 AVAALDDLDDTLRAVLRALAAHPDGFDALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGI 207
A LD+ D AVLR LAA P + D F+AA VP VR RLL LD FG+
Sbjct 111 ASVELDEQDI---AVLRTLAAIPVDMTSTD----AFVAADHEVPAAVRERLLARLDRFGL 163
Query 208 ALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAAGSEVRYRRLLDAVAELEALAA 267
A + A G + T L LR +SG D V++ V AA +EVRYRR+ AV EL LAA
Sbjct 164 AHAVLACADGATAET---LTGALRALSGADRVLECVRAAAAEVRYRRVCAAVDELHRLAA 220
Query 268 QAKEIGGPIGEFLRDDDTVLARMAAAVDVALAVGLDVGPLDDPAAHLPRAVRWHRYSLDN 327
+ ++ G + FL D+ V+A MAAAVD A GL V DD AH RAVRWHRY+
Sbjct 221 ETRDDG--LAAFLASDEVVVAVMAAAVDAMEAAGLRVDRWDDREAHERRAVRWHRYAAGP 278
Query 328 -GDMHRTCGADIARGSLRL 345
+MHR C ADI RGSLRL
Sbjct 279 VTEMHRRCAADITRGSLRL 297
>gi|169631579|ref|YP_001705228.1| hypothetical protein MAB_4505c [Mycobacterium abscessus ATCC
19977]
gi|169243546|emb|CAM64574.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=357
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 134/365 (37%), Positives = 183/365 (51%), Gaps = 29/365 (7%)
Query 4 QGHQIFVDELARFATS------SADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARAL-- 55
+G ++F L RFAT QR+ + RA +PLRVAVRGR GVG +V AL
Sbjct 3 RGFEVFRATLERFATRPEIRQIHGGQRIHDVVVRAGDPLRVAVRGRAGVGVTSVIGALGL 62
Query 56 ---QGAGSSSGMTVTPQARAADSD---VDLVVYVTVEVVKPEDREAIAATRRPVVAVLNK 109
G + P A AD + D+ V V E +KPEDR + A+ P V +LNK
Sbjct 63 TLPADEGPGHALIEVPIA-GADPEPLVADVDVVVFAEALKPEDRAVLEASIAPKVLILNK 121
Query 110 ADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAH 169
ADL P + GP A +RCA++ VP + L A L LDD + L+ + +
Sbjct 122 ADLTDPGAARGPWTAAVSRCAEYRAETRVP---TLPLSAHVPLVSLDDGMVEALKLMVEN 178
Query 170 PDGFDALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTL 229
P ++D F+ VP +R R+L LDL+ + + A R PS L +L
Sbjct 179 PADTSSVD----AFVTCTHDVPVAMRQRILHELDLYPMGCAIGALR-QVPSLAAPGLTSL 233
Query 230 LRRVSGVDAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLAR 289
LR +SG+DAV+ + A ++ YRR+ +AEL + + I F+ DD V+A
Sbjct 234 LRDLSGIDAVVSAIREAIAQGWYRRMRVVLAELRKIGVTGV-LPMQIDSFVNSDDVVVAA 292
Query 290 MAAAVDVALAVGLDVGPLDDPAAHLPRAVRWHRYSLDNGDMHRT---CGADIARGSLRLW 346
M AVD A A G+ V D P H RA RW R++ G ++ T G DIARGSLRLW
Sbjct 293 MRCAVDAATAAGIPVDLSDHPEDHRYRAERWQRFA--EGPVNSTYAALGTDIARGSLRLW 350
Query 347 SLAGG 351
AGG
Sbjct 351 RRAGG 355
>gi|254822118|ref|ZP_05227119.1| hypothetical protein MintA_19442 [Mycobacterium intracellulare
ATCC 13950]
Length=210
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/212 (65%), Positives = 146/212 (69%), Gaps = 8/212 (3%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGS 60
MRGQGHQIFVDEL RFA D RV AIA+R A PLRV VRGR GVG RTVARAL AG+
Sbjct 1 MRGQGHQIFVDELTRFADGVVDPRVTAIARRTAAPLRVVVRGRRGVGRRTVARALDRAGT 60
Query 61 SSGMTVTPQ--ARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSG 118
+SG+ Q A A D D VVYV EVVKPED AIAA +PVVAVLNKADL+G G
Sbjct 61 ASGIAADLQLSASAPDPGADAVVYVVAEVVKPEDAHAIAAAAQPVVAVLNKADLSG-RRG 119
Query 119 AGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDD----TLRAVLRALAAHPDGFD 174
GPI A+ARCA S L+G PME MIGLLAV ALD+LD L A L LA HP
Sbjct 120 DGPIAAARARCADLSALIGAPMEPMIGLLAV-ALDELDKADDHALWAALHTLATHPGAAA 178
Query 175 ALDRAVAGFLAAALPVPTEVRLRLLDTLDLFG 206
LD + AGFLAA PVPT VR RLLDTLDLFG
Sbjct 179 CLDGSFAGFLAADGPVPTGVRQRLLDTLDLFG 210
>gi|315441972|ref|YP_004074851.1| hypothetical protein Mspyr1_03020 [Mycobacterium sp. Spyr1]
gi|315260275|gb|ADT97016.1| hypothetical protein Mspyr1_03020 [Mycobacterium sp. Spyr1]
Length=349
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 142/345 (42%), Positives = 183/345 (54%), Gaps = 27/345 (7%)
Query 3 GQGHQIFVDELARFATSSADQ-RVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSS 61
G G IF + LA+F AD+ + A+ R PL V V+GR GVGCRTVA AL AG
Sbjct 25 GSGVPIFTEVLAQFV---ADRPALAAVDARLRAPLSVTVQGRAGVGCRTVAGALAAAGVR 81
Query 62 SGMTVTPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAGP 121
+ T E +KPEDR + A P V VL KADLAG + G GP
Sbjct 82 IARSSTAADVHV--------VAVAETLKPEDRHLVRADG-PAVVVLTKADLAGRVHG-GP 131
Query 122 IVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAVA 181
+ A+ + + GVP+ M+ LLA ++DD L LR L P ++D VA
Sbjct 132 LAHAERTATELTASTGVPVVPMVALLAGV---EIDDDLFEALRTLTTAPADMTSVDAFVA 188
Query 182 GFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVID 241
G A VP VR L+ LD FGIA + A G SR A++ + L +SG D V+D
Sbjct 189 GDHA----VPASVRRALVARLDRFGIAHAVLAVADG-ASR--AEVASSLHALSGADQVLD 241
Query 242 KVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAVG 301
+ +EV YRR+ A+ EL LA + + G + FL D V+A MAAAVD+ A G
Sbjct 242 VLAGTAAEVGYRRVRSALDELTRLAVETGDDG--LWSFLTGDALVIAAMAAAVDLMQAAG 299
Query 302 LDVGPLDDPAAHLPRAVRWHRYSLDNGD-MHRTCGADIARGSLRL 345
L V P DD AHL RA+RW RY+ + +H+ C ADIARGSLRL
Sbjct 300 LRVDPRDDADAHLGRALRWRRYAHTPMNALHQQCAADIARGSLRL 344
>gi|145221057|ref|YP_001131735.1| hypothetical protein Mflv_0453 [Mycobacterium gilvum PYR-GCK]
gi|145213543|gb|ABP42947.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=322
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 140/340 (42%), Positives = 181/340 (54%), Gaps = 27/340 (7%)
Query 8 IFVDELARFATSSADQ-RVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTV 66
IF + LA+F AD+ + A+ R PL V V+GR GVGCRTVA AL AG +
Sbjct 3 IFTEVLAQFV---ADRPALAAVDARLRAPLSVTVQGRAGVGCRTVAGALAAAGVRIARSS 59
Query 67 TPQARAADSDVDLVVYVTVEVVKPEDREAIAATRRPVVAVLNKADLAGPLSGAGPIVMAQ 126
T E +KPEDR + A P V VL KADLAG + G GP+ A+
Sbjct 60 TAADVHV--------VAVAETLKPEDRHLVRADG-PAVVVLTKADLAGRVHG-GPLAHAE 109
Query 127 ARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDALDRAVAGFLAA 186
+ + GVP+ M+ LLA ++DD L LR L P ++D VAG A
Sbjct 110 RTATELTASTGVPVVPMVALLAGV---EIDDDLFEALRTLTTAPADMTSVDAFVAGDHA- 165
Query 187 ALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAA 246
VP VR L+ LD FGIA + A G SR A++ + L +SG D V+D +
Sbjct 166 ---VPASVRRALVARLDRFGIAHAVLAVADG-ASR--AEVASSLHALSGADQVLDVLAGT 219
Query 247 GSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVALAVGLDVGP 306
+EV YRR+ A+ EL LA + + G + FL D V+A MAAAVD+ A GL V P
Sbjct 220 AAEVGYRRVRSALDELTRLAVETGDDG--LWSFLTGDALVIAAMAAAVDLMQAAGLRVDP 277
Query 307 LDDPAAHLPRAVRWHRYSLDNGD-MHRTCGADIARGSLRL 345
DD AHL RA+RW RY+ + +H+ C ADIARGSLRL
Sbjct 278 RDDADAHLGRALRWRRYAHTPMNALHQQCAADIARGSLRL 317
>gi|118467866|ref|YP_884668.1| hypothetical protein MSMEG_0253 [Mycobacterium smegmatis str.
MC2 155]
gi|118169153|gb|ABK70049.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=340
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 136/360 (38%), Positives = 176/360 (49%), Gaps = 44/360 (12%)
Query 4 QGHQIFVDELARFATS----SADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAG 59
+G Q+F EL RFA + D R+ I+ R P+ V+V GR GVG TVA AL
Sbjct 2 EGRQMFAAELKRFAGCVGDGNRDPRLAKISARVCAPVGVSVHGRRGVGVTTVAEAL---- 57
Query 60 SSSGMTVTPQARAADSDVDLVVYVTVEVVKPED---REAIAATRRPVVAVLNKADLAGPL 116
++G+ V D +L V VTVEV+KPED +A+ A V+ VLNKADL G
Sbjct 58 GANGVAVRD-----DGPGELAVLVTVEVLKPEDLTLADALRARGADVLVVLNKADLVGR- 111
Query 117 SGAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAALDDLDDTLRAVLRALAAHPDGFDAL 176
+ G + A R Q G+P+ M+GLLA A L L LR LA P +
Sbjct 112 APDGSLAAAHHRAQQLRERTGLPVVPMVGLLARAT---LSPHLVEALRLLATTPADLTST 168
Query 177 DRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGV 236
+ FLA PV R LL TLD FGI P+ A L LRR+
Sbjct 169 E----AFLADPHPVAQATRTELLTTLDRFGIVHACRELSRD-PNADAAVLSAALRRLGET 223
Query 237 DAVIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDV 296
D V+ + A + RYRR+ A+ EL+A+ ++ +G FL D TV+A M AA++V
Sbjct 224 DRVLAALDALAAPRRYRRIERALTELQAVGGES------VGRFLAADTTVVAVMDAALEV 277
Query 297 ALAVGLDVGPLDDPA-------AHLPRAVRWHRYSLDN-GDMHRTCGADIARGSLRLWSL 348
A G+ V P+ AHL RA W RY G +H C A IARGSLRL L
Sbjct 278 MRAAGVVV-----PSRAACGRDAHLRRARFWWRYCRGPVGALHGRCAAAIARGSLRLAGL 332
>gi|333988812|ref|YP_004521426.1| hypothetical protein JDM601_0172 [Mycobacterium sp. JDM601]
gi|333484780|gb|AEF34172.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=347
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 147/355 (42%), Positives = 179/355 (51%), Gaps = 35/355 (9%)
Query 4 QGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSG 63
QG Q+F D L R A +D R+ +IA PLRVAV GR GVG RTVA AL AG
Sbjct 19 QGRQLFADGLTRLAADLSDPRLSSIAVDVNAPLRVAVCGRRGVGRRTVAAALAAAGLE-- 76
Query 64 MTVTPQARAADSDVDLVVYVTVEVVKPEDREAI----AATRRPVVAVLNKADLAGPLSGA 119
+ + + D VYV E VKPED I +A RRPV+ VLNKADL G
Sbjct 77 VRCASDSGPKAATADAAVYVVAEAVKPEDPAEIVKVRSARRRPVLVVLNKADLPGRACVD 136
Query 120 GPIVMAQARCAQFSTLLGVPMESMIGLLAVAAL-DDLDDTLRAVLRALAAHPDGFDALDR 178
G ++A P + GL A+AAL LD L A L LA+ P + D
Sbjct 137 GIATASRA-----------PAAPLSGLFALAALAGRLDGELWAALGTLASAPADLRSADH 185
Query 179 AVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDA 238
F++ A PVP ++R RL LDL GI P R T Q R LLRR+SG+D
Sbjct 186 ----FISCAHPVPRQLRERLCAALDLSGIE---QLLEPARRGETVTQGRALLRRLSGIDG 238
Query 239 VIDKVTAAGSEVRYRRLLDAVAELEALAAQAKEIGGPIGEFLRDDDTVLARMAAAVDVAL 298
V+ ++ A G+ V +RR +AV LEALA ++ I EFL D TV ARMAAA V
Sbjct 239 VVARLAALGAGVHHRRTSEAVVRLEALAV-GQDFAARIDEFLNCDGTVAARMAAAAAVVQ 297
Query 299 AVGLDVGPLDDPAAH-LPRAVRWHRY-SLDNGDMHRTCGADIARGSLRLWSLAGG 351
G P L RA RW + S G + R C ADIARGSLR W+ G
Sbjct 298 EQG-------TPGERALRRARRWQGHRSAPVGVIERACAADIARGSLRDWARTRG 345
>gi|296167430|ref|ZP_06849830.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897220|gb|EFG76826.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=47
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/47 (75%), Positives = 36/47 (77%), Gaps = 0/47 (0%)
Query 1 MRGQGHQIFVDELARFATSSADQRVVAIAQRAAEPLRVAVRGRPGVG 47
MRGQGHQ FVDELARFA AD RV AIA+R A PLR VRGRPG G
Sbjct 1 MRGQGHQAFVDELARFAAGHADPRVTAIAERTAGPLRALVRGRPGAG 47
>gi|296395210|ref|YP_003660094.1| hypothetical protein Srot_2832 [Segniliparus rotundus DSM 44985]
gi|296182357|gb|ADG99263.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=385
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 92/329 (28%), Positives = 137/329 (42%), Gaps = 28/329 (8%)
Query 33 AEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVDLVVYVTVEVVKPED 92
++P+RVAV+GR GVG V +AL V S ++V++V + D
Sbjct 62 SDPIRVAVKGREGVGRSRVVQALAPPLEGELDFVESDLGHGQSPGEIVLHVLTAAARSVD 121
Query 93 REAIAATRRPV-VAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAA 151
++A A + +LNK D G A + S LG P+ + LLA A
Sbjct 122 KDASKAVDTTMACGLLNKCDAISTPGDPGLWDQASEAAERSSAELGYPVFPAVALLANAV 181
Query 152 LDDLDDTLRAVLRALAAHPDGFDALDRAVAGFLAAALPVPTEV--RLRLLDTLDLFGIAL 209
+D+ + L DG + + FL A P V R RLL + ++G+
Sbjct 182 VDE------QTYQWLETIADGDETTPPSAELFLEAGRNSPVGVAERERLLREIGIYGLYC 235
Query 210 GMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAAGSEVRYRRLLDAVAELEALAA-- 267
A R R P L LR +SG A + + R RR+ + +A++E A+
Sbjct 236 AFGALRI-EAYRDPQVLTDTLRELSGFSAFLPCLQGLAVRARARRISEFLAKMEQAASLG 294
Query 268 ------QAKEIGGPIGEFLRDDDTVLARMAAAVDVA-LAVGLDVGPLDDPAAHLPRAVRW 320
+A GGP+ D A + +D A LA+G D LDDP A L A+R+
Sbjct 295 VLRDEIEAILAGGPVARLRMD----AAWGSGVLDEADLALGPDA--LDDPQAALQEAIRF 348
Query 321 HRYSLDNGDMHRTCG--ADIARGSLRLWS 347
+ D R G D+ G LR W+
Sbjct 349 RQLGAQCAD-PRAAGLAWDLHVGFLRSWA 376
>gi|317509186|ref|ZP_07966810.1| UbiD family decarboxylase [Segniliparus rugosus ATCC BAA-974]
gi|316252543|gb|EFV11989.1| UbiD family decarboxylase [Segniliparus rugosus ATCC BAA-974]
Length=347
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/337 (28%), Positives = 150/337 (45%), Gaps = 34/337 (10%)
Query 28 IAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVDLVVYVTVEV 87
+A+ + P+RVAV+GR GVG V +AL + V + ++V++V
Sbjct 19 LARTISAPIRVAVKGREGVGRSKVVQALAPMLARELHFVESDLGQSQDPPEIVLHVLAAA 78
Query 88 VKPEDREAIAATRRPV-VAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIGL 146
+ D++A A + +LNK D AG A A+ + LG P+ + L
Sbjct 79 ARGADKDASKAVDNTMACGLLNKCDTISIPGDAGLWDQASEAAARSTRELGYPVFPAVAL 138
Query 147 LAVAALDDLDDTLRAVLRALAAHPDGFDALDRAVAGFLAAA--LPVPTEVRLRLLDTLDL 204
LA A +D + L+++A D + + FL A PV T R RL+ + +
Sbjct 139 LATAV---VDSQMFGWLQSIA---DADETTPPSAELFLGAGRNSPVGTAERERLVREIGI 192
Query 205 FGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAAGSEVRYRRLLDAVAELEA 264
+G+ A R RTP L +LR +SG + + + R RR+ + +A++E
Sbjct 193 YGLYCAFGALRLD-SYRTPEALTAMLRGLSGFGPFLPCLQSLAVRARARRISEFLAKME- 250
Query 265 LAAQAKEIGGPIGEFLRDD-DTVLARMAAA---VDVALAVGL----DVGPLDD----PAA 312
QA ++G LRD+ +T+LA A +D AL G+ DV + D P
Sbjct 251 ---QAADLG-----VLRDEIETILAGAPVARLRMDAALGSGVLGESDVALVADRPAAPRV 302
Query 313 HLPRAVRWHRYSLDNGDMHRTCG--ADIARGSLRLWS 347
L A+R+ + D R G D+ G LRLW+
Sbjct 303 ALGEALRFRQLGARLAD-PRAAGLAWDLHVGFLRLWA 338
>gi|254818289|ref|ZP_05223290.1| hypothetical protein MintA_00095 [Mycobacterium intracellulare
ATCC 13950]
Length=562
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (66%), Positives = 32/43 (75%), Gaps = 6/43 (13%)
Query 316 RAVRWHRYSLDN-GDMHRTCGADIARGSLRLW-----SLAGGM 352
RAVRW RYS + ++HR CGADIARGSLRLW SLAGG+
Sbjct 1 RAVRWQRYSRASASELHRACGADIARGSLRLWSQACASLAGGI 43
>gi|262204296|ref|YP_003275504.1| hypothetical protein Gbro_4478 [Gordonia bronchialis DSM 43247]
gi|262087643|gb|ACY23611.1| hypothetical protein Gbro_4478 [Gordonia bronchialis DSM 43247]
Length=302
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/229 (32%), Positives = 96/229 (42%), Gaps = 27/229 (11%)
Query 27 AIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVDLVVYVTVE 86
A Q P +V V GR GVG T+ARAL G + + A D DL VYV
Sbjct 58 AAEQEHLRPWQVGVLGRAGVGRDTMARAL---GERLSLAASDSA-----DADLWVYVLAG 109
Query 87 VVKPEDREAIAATRRP-VVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIG 145
+ + D +AI R ++ VL KAD G A I AR A LGVP+ +
Sbjct 110 LPRRADTDAIGKLPRDRLIVVLGKADTHGDWDTATSI----ARNAAHR--LGVPVAPVSA 163
Query 146 LLAVAALDDLD-DTLRAVLRALAAHPDGFDALDRAVAGFLAAALPVPTE--VRLRLLDTL 202
LLA + D D TLR A P ++AG + P E RL LL L
Sbjct 164 LLACVQVSDDDFATLRGWASAGIEMP--------SMAGRFLSGPPGSAERQTRLDLLTRL 215
Query 203 DLFGIALGMAAFRPGRPSRTP-AQLRTLLRRVSGVDAVIDKVTAAGSEV 250
D FGI L + P+ A + L SG+ +++ + A V
Sbjct 216 DQFGIDLALTLIGESSPAAADGATFTSFLHAASGISDLVEPLRAMAGPV 264
>gi|300791057|ref|YP_003771348.1| isoniazid inducible gene protein IniC [Amycolatopsis mediterranei
U32]
gi|299800571|gb|ADJ50946.1| isoniazid inducible gene protein IniC [Amycolatopsis mediterranei
U32]
gi|340532756|gb|AEK47961.1| isoniazid inducible gene protein IniC [Amycolatopsis mediterranei
S699]
Length=518
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/191 (36%), Positives = 92/191 (49%), Gaps = 24/191 (12%)
Query 70 ARAADSDVDLVVYVTVEVVKPEDREAIAATRR--------PV--VAVLNKADLAGPLS-- 117
+R A + + V+YV + V+ +D++A+AA PV +AVLNKAD P S
Sbjct 184 SRNAVAGAEAVLYVVTQGVRADDQQALAAFTAATASREAGPVNAIAVLNKADTIAPESVE 243
Query 118 GAGPIVMAQARC---AQFSTLLG--VPMESMIGLLAVAALDDLDDTLRA-VLRALAAHPD 171
G+G V A Q STL + +IGL+A +A + A LR LA D
Sbjct 244 GSGGDVWKAATLLAEKQASTLKPRVADVLPVIGLIAESAESGGFTSADADALRQLAELDD 303
Query 172 GFDALDRAVAG---FLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRT 228
D L + F + VP RLRLL+ LDLFGI+ G+ A R P T LR
Sbjct 304 --DVLQTMLMSADIFTSWECDVPAGTRLRLLEKLDLFGISHGVEAIRK-EPEITAGALRR 360
Query 229 LLRRVSGVDAV 239
L SG++AV
Sbjct 361 ALLDASGLEAV 371
>gi|302531263|ref|ZP_07283605.1| isoniazid inducible protein IniC [Streptomyces sp. AA4]
gi|302440158|gb|EFL11974.1| isoniazid inducible protein IniC [Streptomyces sp. AA4]
Length=514
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 62/191 (33%), Positives = 92/191 (49%), Gaps = 24/191 (12%)
Query 70 ARAADSDVDLVVYVTVEVVKPEDREAIAATRR--------PV--VAVLNKAD--LAGPLS 117
+R A + + V+YV + V+ +D++A+AA PV +AVLNKAD +A +
Sbjct 180 SRNAVAGAEAVLYVVTQGVRADDQQALAAFTAATASRDAGPVNAIAVLNKADTIVAESVE 239
Query 118 GAGPIVMAQARC---AQFSTLLGVPMESM--IGLLAVAA----LDDLDDTLRAVLRALAA 168
G+G V A+ Q +TL + + IGL+A +A D L AL
Sbjct 240 GSGGDVWTAAQLLAEKQAATLKPRVADVLPVIGLIAESAESGGFTSADAEALGQLAAL-- 297
Query 169 HPDGFDALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRT 228
D + + A F + +P +RLRLL+ LDLFGI + A R P T LR
Sbjct 298 DDDVLETMLIAADIFTSWECDIPAGIRLRLLEKLDLFGIRCAVDAIR-AEPEITAGALRR 356
Query 229 LLRRVSGVDAV 239
L +SG++AV
Sbjct 357 KLLDISGLEAV 367
>gi|291004777|ref|ZP_06562750.1| isoniazid inductible gene protein IniC [Saccharopolyspora erythraea
NRRL 2338]
Length=526
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 69/227 (31%), Positives = 103/227 (46%), Gaps = 28/227 (12%)
Query 44 PGVGC---RTVARALQGAGS-----SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREA 95
PG+G +VAR + G+ +G + P +R A + + V+YV + V+ +D++A
Sbjct 156 PGLGSLDAASVARTEELLGTRRGDGEAGDDLDPVSRNAVAGAEAVLYVVTQAVRADDQQA 215
Query 96 IA------ATRR--PV--VAVLNKADLAGPLS---GAGPIVMAQARCAQFSTLLGVP--- 139
+A A+R PV +A+LNKAD P S G + A A L P
Sbjct 216 LASFTAATASREAGPVNAIALLNKADTIEPDSVSESGGDVWTAATLIAGKQAQLLKPRVA 275
Query 140 -MESMIGLLA-VAALDDLDDTLRAVLRALAAHPD-GFDALDRAVAGFLAAALPVPTEVRL 196
+ +IGLLA A LR LAA + + L + F + VP VR
Sbjct 276 DVLPVIGLLAETAETGGFTSADADALRRLAALDEVTRETLLMSADLFTSWDCDVPAGVRT 335
Query 197 RLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKV 243
RLL+ +DL+GI +AA P T LR L SG+ V+ ++
Sbjct 336 RLLERMDLYGIRHALAAI-DAEPEITAGDLRRRLLDSSGLAGVMSRL 381
>gi|134103688|ref|YP_001109349.1| isoniazid inductible gene protein IniC [Saccharopolyspora erythraea
NRRL 2338]
gi|133916311|emb|CAM06424.1| isoniazid inductible gene protein IniC [Saccharopolyspora erythraea
NRRL 2338]
Length=493
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 69/227 (31%), Positives = 103/227 (46%), Gaps = 28/227 (12%)
Query 44 PGVGC---RTVARALQGAGS-----SSGMTVTPQARAADSDVDLVVYVTVEVVKPEDREA 95
PG+G +VAR + G+ +G + P +R A + + V+YV + V+ +D++A
Sbjct 123 PGLGSLDAASVARTEELLGTRRGDGEAGDDLDPVSRNAVAGAEAVLYVVTQAVRADDQQA 182
Query 96 IA------ATRR--PV--VAVLNKADLAGPLS---GAGPIVMAQARCAQFSTLLGVPMES 142
+A A+R PV +A+LNKAD P S G + A A L P +
Sbjct 183 LASFTAATASREAGPVNAIALLNKADTIEPDSVSESGGDVWTAATLIAGKQAQLLKPRVA 242
Query 143 ----MIGLLA-VAALDDLDDTLRAVLRALAAHPD-GFDALDRAVAGFLAAALPVPTEVRL 196
+IGLLA A LR LAA + + L + F + VP VR
Sbjct 243 DVLPVIGLLAETAETGGFTSADADALRRLAALDEVTRETLLMSADLFTSWDCDVPAGVRT 302
Query 197 RLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKV 243
RLL+ +DL+GI +AA P T LR L SG+ V+ ++
Sbjct 303 RLLERMDLYGIRHALAAI-DAEPEITAGDLRRRLLDSSGLAGVMSRL 348
>gi|257057849|ref|YP_003135681.1| GTPase [Saccharomonospora viridis DSM 43017]
gi|256587721|gb|ACU98854.1| GTPase of unknown function [Saccharomonospora viridis DSM 43017]
Length=536
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/192 (31%), Positives = 88/192 (46%), Gaps = 27/192 (14%)
Query 70 ARAADSDVDLVVYVTVEVVKPEDREAIAATRR--------PV--VAVLNKADLAGPLSGA 119
+R A + + V+YV + ++ +D +A+AA PV +AVLNKAD P +
Sbjct 199 SRNAVAGAEAVLYVMTQGLRADDEQALAAFTAATASREAGPVNAIAVLNKADTIVPETVE 258
Query 120 GPIVMAQARCAQFSTLLG-----------VPMESMIGLLAVAALDDLDDTLRA-VLRALA 167
G + + +TLL + +IGL+A +A + A LR LA
Sbjct 259 G----SDGDVWKAATLLAKRQADTLKPRVADVLPVIGLIAESAESGQFTSADAEALRQLA 314
Query 168 AHPDGFDALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLR 227
D D + + F + VP VR RLL+ LDL+G+ + A R +P T LR
Sbjct 315 ELDDALDVMLLSADMFTSWECDVPNGVRARLLEKLDLYGVRRAVEAIR-AQPDITAGALR 373
Query 228 TLLRRVSGVDAV 239
LL SG+ AV
Sbjct 374 RLLLDASGLAAV 385
>gi|333921787|ref|YP_004495368.1| hypothetical protein AS9A_4134 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484008|gb|AEF42568.1| hypothetical protein AS9A_4134 [Amycolicicoccus subflavus DQS3-9A1]
Length=342
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 64/231 (28%), Positives = 100/231 (44%), Gaps = 28/231 (12%)
Query 34 EPLRVAVRGRPGVGCRTVARALQGAGSSSGM---TVTPQARAADSDVDLVVYVTVEVVKP 90
+ RV + G G G T+A L + + T+ A D +VYV+ +
Sbjct 4 DTYRVVIAGCAGSGVSTLANYLGETLTGVEIREVTIGIGTPCAPVQADAIVYVSTAYPRE 63
Query 91 EDREAIAATR--------RP-VVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPME 141
EDR A++ R +P ++ VL +ADL G+ P ++ A + L G+ +
Sbjct 64 EDRRAVSGLREGGRDGRAKPRLLGVLARADLLEWTPGS-PQAVSAAAARPHADLAGLAL- 121
Query 142 SMIGLLAVAAL----------DDLDDTLR-AVLRALAAHPDGFDALDRAVAGFLAAALPV 190
IG++ V+AL D++ R A RA + + F A+ +
Sbjct 122 -TIGVVPVSALLARASRSLTMSDMESLRRMASSRADQGRARLGEVWWYSAGLFTERAVSI 180
Query 191 PTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVID 241
R RLL LDL GI L ++A R P T ++ L+R SG+ AVID
Sbjct 181 ERSQRERLLGLLDLPGIGLAVSALRDS-PEMTLDEMGELMRETSGI-AVID 229
>gi|343924439|ref|ZP_08763988.1| hypothetical protein GOALK_016_00370 [Gordonia alkanivorans NBRC
16433]
gi|343765583|dbj|GAA10914.1| hypothetical protein GOALK_016_00370 [Gordonia alkanivorans NBRC
16433]
Length=292
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/129 (38%), Positives = 62/129 (49%), Gaps = 15/129 (11%)
Query 27 AIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVDLVVYVTVE 86
A R PL V V GRPGVG T+ARAL+ + + + A AA DL ++V
Sbjct 47 AAGHRFLRPLHVQVVGRPGVGRDTMARALRERLAPTVTGLGEDAPAA----DLWLHVLAG 102
Query 87 VVKPEDRE---AIAATRRPVVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESM 143
+ D E ++ A R VV VL KAD A V RC ST LG+P+ ++
Sbjct 103 PPRRADHELLSSLPADR--VVVVLGKADTHPDWEAA---VDVARRC---STQLGLPVHAV 154
Query 144 IGLLAVAAL 152
LLA A L
Sbjct 155 SQLLACADL 163
>gi|296138108|ref|YP_003645351.1| hypothetical protein Tpau_0369 [Tsukamurella paurometabola DSM
20162]
gi|296026242|gb|ADG77012.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=237
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 75/223 (34%), Positives = 104/223 (47%), Gaps = 32/223 (14%)
Query 35 PLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVDLVVYVTVEVVKPEDRE 94
P RV + GR GVG +A AL+ G+ T + DS D +Y ++ DR
Sbjct 10 PPRVRLLGRDGVGKSVLAAALE----RRGIATTKR----DSG-DANLYCLAGGLRATDRA 60
Query 95 AIA---ATRRPVVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIGLLAVAA 151
AIA A R P++ KAD AG A AR A+ + LG P+ +++ LL V
Sbjct 61 AIATLAAGRTPLLVAWTKADAAGSWR------AADARAAELAGELGRPVLAVMALLDVIG 114
Query 152 LDDLDDTLRAVLRALAAHPDGFDALDRAVAGFLAAALPVPTEVRLRLLDTLDLFGIALGM 211
D+LD + R LAA F AL +VA AAAL V +R +G+A +
Sbjct 115 TDELD-----IARRLAAS--AF-ALPESVAEA-AAALGDDASVLVR----TGGYGLACAI 161
Query 212 AAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAAGSEVRYRR 254
A R PS + +L L +SGVD + + V AA + RR
Sbjct 162 GALRE-TPSLSTDELLPRLHELSGVDLLAEPVIAAFAGFEARR 203
>gi|54027455|ref|YP_121697.1| hypothetical protein nfa54810 [Nocardia farcinica IFM 10152]
gi|54018963|dbj|BAD60333.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=376
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 54/118 (46%), Gaps = 7/118 (5%)
Query 34 EPLRVAVRGRPGVGCRTVARALQGAGSSSGMTV-TPQARAADSDVDLVVYVTVEVVKPED 92
+P R+ V GR G TV AL + + P + + D D+VVYV P D
Sbjct 50 KPPRIQVTGRAHAGRTTVLHALALLSAVETAPIDEPGSPDPELDADIVVYVLAGAPLPAD 109
Query 93 REAIAA-TRRPVVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLGVPMESMIGLLAV 149
R +A R+ V VLNKAD G A + A+ Q+ LG+P ++ LA+
Sbjct 110 RRVLAGLPRQHTVVVLNKADAIGS-RWADAVSAAE----QYGRELGLPTVPVVASLAM 162
>gi|268597693|ref|ZP_06131860.1| LOW QUALITY PROTEIN: glutamate-ammonia-ligase adenylyltransferase
[Neisseria gonorrhoeae FA19]
gi|268551481|gb|EEZ46500.1| LOW QUALITY PROTEIN: glutamate-ammonia-ligase adenylyltransferase
[Neisseria gonorrhoeae FA19]
Length=475
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 61 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 119
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 120 ILLDELISAQLLDTAFDWQALAA 142
>gi|331696084|ref|YP_004332323.1| von Willebrand factor type A [Pseudonocardia dioxanivorans CB1190]
gi|326950773|gb|AEA24470.1| von Willebrand factor type A [Pseudonocardia dioxanivorans CB1190]
Length=320
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/131 (33%), Positives = 62/131 (48%), Gaps = 10/131 (7%)
Query 19 SSADQRVVAIAQRAAEPLRVAVRGRPGVGCRTVARALQGAGSSSGMTVTPQARAADSDVD 78
+ AD V A+A+R A L VR RP VA + +GAG M + R+ D D+D
Sbjct 74 TPADGEVAALARRIARSL--TVRRRP-----RVASSGRGAGRLQPMPY--RYRSDDIDID 124
Query 79 LVVYVTVEVVKPEDREAIAATR-RPVVAVLNKADLAGPLSGAGPIVMAQARCAQFSTLLG 137
+ V E PED E + R R AV+ AD++G + G + A A A + L G
Sbjct 125 RTLEVLAERPHPEDTEIVVRERVRSPRAVVLMADVSGSMRGEKARITAAAVAALTADLTG 184
Query 138 VPMESMIGLLA 148
+ + L+A
Sbjct 185 AATDDQLALVA 195
>gi|293398116|ref|ZP_06642321.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
F62]
gi|291611379|gb|EFF40449.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
F62]
Length=896
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|317165454|gb|ADV08995.1| bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
[Neisseria gonorrhoeae TCDC-NG08107]
Length=896
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|240015008|ref|ZP_04721921.1| GlnE [Neisseria gonorrhoeae DGI18]
gi|240122077|ref|ZP_04735039.1| GlnE [Neisseria gonorrhoeae PID24-1]
gi|254494633|ref|ZP_05107804.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
1291]
gi|226513673|gb|EEH63018.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
1291]
Length=896
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|59802079|ref|YP_208791.1| GlnE [Neisseria gonorrhoeae FA 1090]
gi|59718974|gb|AAW90379.1| putative glutamate-ammonia-ligase adenylyltransferase [Neisseria
gonorrhoeae FA 1090]
Length=896
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|268593864|ref|ZP_06128031.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
35/02]
gi|268599943|ref|ZP_06134110.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
MS11]
gi|268683333|ref|ZP_06150195.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
SK-92-679]
gi|268547253|gb|EEZ42671.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
35/02]
gi|268584074|gb|EEZ48750.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
MS11]
gi|268623617|gb|EEZ56017.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
SK-92-679]
Length=896
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|194100010|ref|YP_002003149.1| bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
[Neisseria gonorrhoeae NCCP11945]
gi|240017455|ref|ZP_04723995.1| GlnE [Neisseria gonorrhoeae FA6140]
gi|268602278|ref|ZP_06136445.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
PID18]
gi|193935300|gb|ACF31124.1| GlnE [Neisseria gonorrhoeae NCCP11945]
gi|268586409|gb|EEZ51085.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
PID18]
Length=896
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|268682998|ref|ZP_06149860.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
PID332]
gi|268623282|gb|EEZ55682.1| glutamate-ammonia-ligase adenylyltransferase [Neisseria gonorrhoeae
PID332]
Length=896
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 1/83 (1%)
Query 185 AAALPVPTEVRLRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVT 244
AA PT+ +RLLD L+ + AF P +T AQL ++ + S V A ++K
Sbjct 482 AAEQNNPTDTLMRLLDFLENISLRSAYLAFLNEHP-QTLAQLAQIMSQSSWVAAYLNKYP 540
Query 245 AAGSEVRYRRLLDAVAELEALAA 267
E+ +LLD + +ALAA
Sbjct 541 ILLDELISAQLLDTAFDWQALAA 563
>gi|302548025|ref|ZP_07300367.1| polyketide synthase [Streptomyces hygroscopicus ATCC 53653]
gi|302465643|gb|EFL28736.1| polyketide synthase [Streptomyces himastatinicus ATCC 53653]
Length=851
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 36/84 (43%), Gaps = 10/84 (11%)
Query 198 LLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAAGSEVRYRRLLD 257
LL LD G ALG A P + +R +LR LLRRV G G EV LD
Sbjct 778 LLADLDAIGAALGTVADDPEQRTRIAGRLRELLRRVDG----------DGEEVSAEDDLD 827
Query 258 AVAELEALAAQAKEIGGPIGEFLR 281
+ + E E+ P + LR
Sbjct 828 SATDEELFQVLDSELNAPFDDSLR 851
>gi|154244371|ref|YP_001415329.1| GntR family transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154158456|gb|ABS65672.1| putative transcriptional regulator, GntR family [Xanthobacter
autotrophicus Py2]
Length=460
Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/81 (40%), Positives = 42/81 (52%), Gaps = 6/81 (7%)
Query 196 LRLLDTLDLFGIALGMAAFRPGRPSRTPAQLRTLLRRVSGVDAVIDKVTAAGSEVRYRRL 255
LR L +DL A+ RPG R P Q R L ++ GVD + VT A +E R R L
Sbjct 20 LRYLQIVDLVAEAVAAGRLRPG--DRLPPQ-RKLADQL-GVD--LTTVTRAYAEARRRNL 73
Query 256 LDAVAELEALAAQAKEIGGPI 276
+DAV + A +E GGP+
Sbjct 74 IDAVTGRGSFIAVRREPGGPL 94
Lambda K H
0.322 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 675949021000
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40