BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0233
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXI... 649 0.0
gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductas... 649 0.0
gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductas... 645 0.0
gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reduc... 644 0.0
gi|339293297|gb|AEJ45408.1| ribonucleotide-diphosphate reductase... 644 0.0
gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reduc... 643 0.0
gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reduc... 643 0.0
gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reduc... 642 0.0
gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reduc... 640 0.0
gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reduc... 635 2e-180
gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reduc... 564 8e-159
gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductas... 552 2e-155
gi|342859299|ref|ZP_08715953.1| ribonucleotide-diphosphate reduc... 551 5e-155
gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reducta... 551 5e-155
gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reduc... 550 1e-154
gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate redu... 550 2e-154
gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reduc... 543 1e-152
gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reducta... 540 1e-151
gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate redu... 532 3e-149
gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reducta... 531 5e-149
gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reducta... 528 4e-148
gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate redu... 526 1e-147
gi|333988855|ref|YP_004521469.1| ribonucleotide-diphosphate redu... 519 3e-145
gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reduc... 507 1e-141
gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reducta... 419 3e-115
gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate redu... 419 4e-115
gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate redu... 417 8e-115
gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reduc... 416 2e-114
gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate redu... 415 6e-114
gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 ... 415 6e-114
gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reduc... 400 1e-109
gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate redu... 396 2e-108
gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate redu... 395 4e-108
gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reduc... 392 3e-107
gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribb... 390 1e-106
gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate redu... 389 4e-106
gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01... 385 5e-105
gi|343924420|ref|ZP_08763969.1| hypothetical protein GOALK_016_0... 384 7e-105
gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reduc... 376 2e-102
gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate redu... 369 3e-100
gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reduc... 360 1e-97
gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subuni... 300 2e-79
gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Therma... 249 4e-64
gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Therm... 243 2e-62
gi|339288041|gb|AEJ42151.1| ribonucleotide reductase [Alicycloba... 226 4e-57
gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyc... 226 4e-57
gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicy... 226 5e-57
gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacil... 223 2e-56
gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate redu... 220 2e-55
gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus... 219 3e-55
>gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
Length=323
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL
Sbjct 10 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 69
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 70 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 129
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 130 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 189
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 190 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 249
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 250 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 309
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAASA
Sbjct 310 FADEDRRTLAAASA 323
>gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Rv]
gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
12 more sequence titles
Length=314
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAASA
Sbjct 301 FADEDRRTLAAASA 314
>gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CDC1551]
gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis AF2122/97]
gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Pasteur 1173P2]
52 more sequence titles
Length=314
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAASA
Sbjct 301 FADEDRRTLAAASA 314
>gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis CPHL_A]
gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis CPHL_A]
Length=314
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEID+DYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDIDYSPAQLEDT 300
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAASA
Sbjct 301 FADEDRRTLAAASA 314
>gi|339293297|gb|AEJ45408.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CCDC5079]
Length=314
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWH+
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHE 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAASA
Sbjct 301 FADEDRRTLAAASA 314
>gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis SUMu007]
gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis SUMu009]
gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis SUMu007]
gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis SUMu009]
Length=323
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/312 (99%), Positives = 311/312 (99%), Gaps = 0/312 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAAA 312
FADEDRRTLAAA
Sbjct 301 FADEDRRTLAAA 312
>gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis SUMu006]
gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis SUMu006]
Length=314
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/314 (99%), Positives = 312/314 (99%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MT TRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTHTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAASA
Sbjct 301 FADEDRRTLAAASA 314
>gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 210]
Length=317
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/314 (99%), Positives = 312/314 (99%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAAASA 314
FADEDRRTLAAA A
Sbjct 301 FADEDRRTLAAAPA 314
>gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
Length=311
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/311 (99%), Positives = 310/311 (99%), Gaps = 0/311 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRTLAA 311
FADEDRRTLAA
Sbjct 301 FADEDRRTLAA 311
>gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium
tuberculosis C]
gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium
tuberculosis C]
Length=321
Score = 635 bits (1639), Expect = 2e-180, Method: Compositional matrix adjust.
Identities = 307/308 (99%), Positives = 307/308 (99%), Gaps = 0/308 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR
Sbjct 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT
Sbjct 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
Query 301 FADEDRRT 308
FADEDRRT
Sbjct 301 FADEDRRT 308
>gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
kansasii ATCC 12478]
Length=314
Score = 564 bits (1453), Expect = 8e-159, Method: Compositional matrix adjust.
Identities = 264/314 (85%), Positives = 291/314 (93%), Gaps = 0/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNW SLPLKLFAGGNAKFW PADIDF+R+R DW++L+D ERDYA RL
Sbjct 1 MTRTRSGSLAAGGLNWNSLPLKLFAGGNAKFWDPADIDFSREREDWDRLTDTERDYAIRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C QF+AGEEAVTEDIQPFM+AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLD+VG++ D
Sbjct 61 CAQFVAGEEAVTEDIQPFMAAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGVTGD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH YLDDLP+YRQ+FY ELPECL+AL+ DPSPAAQVRASVTYNHIVEGMLALTGYYAWHK
Sbjct 121 LHGYLDDLPSYRQMFYDELPECLSALTTDPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVER ILPGMQ LVR I DDERRHMAWGTFTCRRHVAA+DANWTVFE RMNELIPLAL+
Sbjct 181 ICVERGILPGMQRLVRHISDDERRHMAWGTFTCRRHVAANDANWTVFEERMNELIPLALQ 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
L ++GFALYGD PFDLS ++F+ YS+DKGMRRFGTIS+ARGRPV EID+DY+P QLEDT
Sbjct 241 LTQDGFALYGDPMPFDLSVEEFMTYSSDKGMRRFGTISSARGRPVGEIDLDYTPVQLEDT 300
Query 301 FADEDRRTLAAASA 314
FA+ED+R LAAASA
Sbjct 301 FAEEDQRALAAASA 314
>gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium subsp. paratuberculosis K-10]
gi|81413257|sp|Q73TP6.1|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460101|gb|EGO39009.1| ribonucleotide reductase, beta subunit [Mycobacterium avium subsp.
paratuberculosis S397]
Length=311
Score = 552 bits (1423), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 258/312 (83%), Positives = 287/312 (92%), Gaps = 1/312 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M RTRS S+A GGLNW SLPLKLFAGGNAKFW+PADIDF+RDRADWE+L+DDER YATRL
Sbjct 1 MNRTRSASMAQGGLNWDSLPLKLFAGGNAKFWNPADIDFSRDRADWERLTDDERSYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEE+VT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKH QVFRMWLDAVG+++D
Sbjct 61 CAEFIAGEESVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH +LDD+P+YR IFY ELP+CLNAL+ DPSPAAQVRASVTYNH+VEGMLALTGY+ WHK
Sbjct 121 LHHFLDDVPSYRTIFYEELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVER ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFETRMNEL+PL LR
Sbjct 181 ICVERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALY D PFDLS D+F+ Y++DKGMRRFGTI++ARGRP+AEID+DY+P QLEDT
Sbjct 241 LIEEGFALY-DPMPFDLSVDEFMAYASDKGMRRFGTIASARGRPLAEIDLDYTPVQLEDT 299
Query 301 FADEDRRTLAAA 312
FADED R LAA
Sbjct 300 FADEDARALAAV 311
>gi|342859299|ref|ZP_08715953.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
colombiense CECT 3035]
gi|342133540|gb|EGT86743.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
colombiense CECT 3035]
Length=313
Score = 551 bits (1420), Expect = 5e-155, Method: Compositional matrix adjust.
Identities = 259/314 (83%), Positives = 286/314 (92%), Gaps = 1/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M RTR S+A GGLNW SLPLKLFAGGNAKFW+PADIDF+RDR DWE+L+DDER YATRL
Sbjct 1 MNRTRIASMAEGGLNWDSLPLKLFAGGNAKFWNPADIDFSRDREDWERLTDDERSYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEE+VT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKH QVFRMWLDAVGI+ED
Sbjct 61 CAEFIAGEESVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH YL+D+P YR IFY ELPECL+AL+ DPSPAAQVRASVTYNH+VEGMLALTGY+ WHK
Sbjct 121 LHYYLEDVPTYRTIFYEELPECLDALTVDPSPAAQVRASVTYNHMVEGMLALTGYFGWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVER ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFETRMNEL+PL LR
Sbjct 181 ICVERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALY D PF LS D+F+QY++DKGMRRFGTIS+ARGRP++EID+DYSP QLEDT
Sbjct 241 LIEEGFALY-DPMPFGLSLDEFMQYASDKGMRRFGTISSARGRPLSEIDLDYSPVQLEDT 299
Query 301 FADEDRRTLAAASA 314
FA+ED + LA ASA
Sbjct 300 FAEEDEKLLAGASA 313
>gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium 104]
gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium subsp. avium ATCC 25291]
gi|238055303|sp|A0QMC0.1|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium
avium 104]
Length=311
Score = 551 bits (1420), Expect = 5e-155, Method: Compositional matrix adjust.
Identities = 257/312 (83%), Positives = 286/312 (92%), Gaps = 1/312 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M RTRS S+ GGLNW SLPLKLFAGGNAKFW+PADIDF+RDRADWE+L+DDER YATRL
Sbjct 1 MNRTRSASMVQGGLNWDSLPLKLFAGGNAKFWNPADIDFSRDRADWERLTDDERSYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEE+VT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKH QVFRMWLDAVG+++D
Sbjct 61 CAEFIAGEESVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH +LDD+P+YR IFY ELP+CLNAL+ DPSPAAQVRASVTYNH+VEGMLALTGY+ WHK
Sbjct 121 LHHFLDDVPSYRTIFYEELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVER ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFETRMNEL+PL LR
Sbjct 181 ICVERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALY D PFDLS D+F+ Y++DKGMRRFGTI++ARGRP+AEID+DY+P QLEDT
Sbjct 241 LIEEGFALY-DPMPFDLSVDEFMAYASDKGMRRFGTIASARGRPLAEIDLDYTPVQLEDT 299
Query 301 FADEDRRTLAAA 312
FADED R LAA
Sbjct 300 FADEDARALAAV 311
>gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
intracellulare ATCC 13950]
Length=313
Score = 550 bits (1416), Expect = 1e-154, Method: Compositional matrix adjust.
Identities = 259/314 (83%), Positives = 284/314 (91%), Gaps = 1/314 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M RTR S+A GGLNW SLPLKLFAGGNAKFW+PADIDF+RDR DWE+L++DER YATRL
Sbjct 1 MNRTRIASMAEGGLNWDSLPLKLFAGGNAKFWNPADIDFSRDREDWERLTEDERSYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEE+VT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKH QVFRMWLDAVGI+ED
Sbjct 61 CAEFIAGEESVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH +LDD+P YR IFY ELP CLNAL+ DPSPAAQVRASVTYNH+VEGMLALTGY+ WHK
Sbjct 121 LHYFLDDVPTYRTIFYEELPACLNALTLDPSPAAQVRASVTYNHMVEGMLALTGYFGWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVER ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFETRMNEL+PL LR
Sbjct 181 ICVERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LIEEGFALY D PF LS D+F+QY++DKGMRRFGTIS+ARGRP+ EID+DYSP QLEDT
Sbjct 241 LIEEGFALY-DPMPFGLSVDEFMQYASDKGMRRFGTISSARGRPLGEIDLDYSPLQLEDT 299
Query 301 FADEDRRTLAAASA 314
FADED + LA ASA
Sbjct 300 FADEDEKALAGASA 313
>gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
abscessus ATCC 19977]
gi|238055304|sp|B1MHK0.1|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
abscessus]
Length=313
Score = 550 bits (1416), Expect = 2e-154, Method: Compositional matrix adjust.
Identities = 259/313 (83%), Positives = 284/313 (91%), Gaps = 0/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRT+ GSL AGGLNW S+PLKLFAGGNAKFW PA IDF+RDRADWE L++ ERDYATRL
Sbjct 1 MTRTQYGSLRAGGLNWDSMPLKLFAGGNAKFWDPAGIDFSRDRADWESLTERERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C QFIAGEE+VT+DIQPFMSAMRAEGRL DEMYLTQFAFEEAKHTQVFR+WLDAVG+SED
Sbjct 61 CAQFIAGEESVTQDIQPFMSAMRAEGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH YLDDLPAYR+IF+ LP+ L L+ADPSPAAQVRASVTYNH+VEGMLALTGY+AWHK
Sbjct 121 LHGYLDDLPAYREIFFDRLPDALGMLAADPSPAAQVRASVTYNHVVEGMLALTGYFAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R ILPGMQELV RIGDDERRHMAWGTFTCRRHVAADDANW+VFE RMNELIP+ALR
Sbjct 181 ICVDRGILPGMQELVHRIGDDERRHMAWGTFTCRRHVAADDANWSVFEARMNELIPIALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
L EEGF LYGD PF LS D+F+QYS DKGMRRFGTIS+ARGRP+AEID+DYSP QLEDT
Sbjct 241 LTEEGFELYGDDTPFGLSLDEFMQYSADKGMRRFGTISSARGRPLAEIDLDYSPLQLEDT 300
Query 301 FADEDRRTLAAAS 313
FA EDR+ LAA +
Sbjct 301 FAAEDRQALAATA 313
>gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=305
Score = 543 bits (1400), Expect = 1e-152, Method: Compositional matrix adjust.
Identities = 255/306 (84%), Positives = 279/306 (92%), Gaps = 1/306 (0%)
Query 9 LAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGE 68
+ GGLNW SLPL+LFAGGNAKFW+PADIDF+RDRADWE+L++DER YA RLC +FIAGE
Sbjct 1 MVKGGLNWDSLPLRLFAGGNAKFWNPADIDFSRDRADWEQLTEDERHYAIRLCAEFIAGE 60
Query 69 EAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDL 128
EAVTEDIQPFMSAMR EGRL DEMYLTQFAFEEAKH QVFRMWLDAVG++EDLH+YLDD+
Sbjct 61 EAVTEDIQPFMSAMRVEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTEDLHQYLDDI 120
Query 129 PAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAIL 188
P YR IFY ELP+CLNALS DPSPAAQVRASVTYNH+VEGMLALTGY+ WHKICVER IL
Sbjct 121 PTYRTIFYEELPDCLNALSVDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGIL 180
Query 189 PGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFAL 248
PGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFETRMNEL+PL LRLIEEGF+L
Sbjct 181 PGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSL 240
Query 249 YGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADEDRRT 308
Y D PF LS D+F+QY+ DKGMRRFGTIS+ARGRP+ EID+DYSP QLEDTFADED +
Sbjct 241 Y-DPMPFGLSVDEFMQYAADKGMRRFGTISSARGRPLEEIDLDYSPLQLEDTFADEDEKA 299
Query 309 LAAASA 314
LAAASA
Sbjct 300 LAAASA 305
>gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
vanbaalenii PYR-1]
gi|238055311|sp|A1TAR1.1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1]
Length=312
Score = 540 bits (1391), Expect = 1e-151, Method: Compositional matrix adjust.
Identities = 257/313 (83%), Positives = 286/313 (92%), Gaps = 1/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M RTRS SLAAGGLNW SLPL+LFAGGNAKFW PADIDF+RDRADWE L+D ERD+ATRL
Sbjct 1 MARTRSDSLAAGGLNWDSLPLRLFAGGNAKFWDPADIDFSRDRADWESLTDLERDWATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEEAVT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKHTQVFRMWLDAVGI+ED
Sbjct 61 CAEFIAGEEAVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
L YLD+LPAY Q+FY ELP L+AL+ DPSPAAQVRASVTYNH++EGM+ALTGYYAWH+
Sbjct 121 LQGYLDELPAYCQMFYEELPASLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHR 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFETRMNELIPLALR
Sbjct 181 ICVDRGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWAVFETRMNELIPLALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
E+GFALY D+ PF L+ ++F QY+ DKGMRRFGTIS+ARGRP+AEIDVDYSP LEDT
Sbjct 241 NTEDGFALY-DEVPFGLTMEEFQQYAADKGMRRFGTISSARGRPLAEIDVDYSPLHLEDT 299
Query 301 FADEDRRTLAAAS 313
FADEDR++LAA++
Sbjct 300 FADEDRKSLAASA 312
>gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
gilvum PYR-GCK]
gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1]
gi|238055306|sp|A4TB76.1|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain) [Mycobacterium
gilvum PYR-GCK]
gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1]
Length=312
Score = 532 bits (1370), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 253/313 (81%), Positives = 283/313 (91%), Gaps = 1/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M RTRS SLAAGGLNW SLPL+LFAGGNAKFW PADIDF+RDRADWE LS ERD+ATRL
Sbjct 1 MNRTRSDSLAAGGLNWDSLPLRLFAGGNAKFWDPADIDFSRDRADWESLSTMERDWATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEEAVT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKHTQVFRMWLDAVGI+ED
Sbjct 61 CAEFIAGEEAVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
L YLDDLPAYRQ+FY ELP L+AL+ DPSP AQVRASVTYNH++EGM+ALTGYYAWH+
Sbjct 121 LQGYLDDLPAYRQMFYEELPASLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHR 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFE RMNELIPLAL+
Sbjct 181 ICVDRHILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFEDRMNELIPLALQ 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
++ FALY D+ PF L+ ++F QY+ DKGMRRFGTIS+ARGRP+AEIDVDY+P LED+
Sbjct 241 NTDDAFALY-DEIPFGLTIEEFQQYAADKGMRRFGTISSARGRPLAEIDVDYTPLHLEDS 299
Query 301 FADEDRRTLAAAS 313
FADEDR+ LAA++
Sbjct 300 FADEDRKALAASA 312
>gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
smegmatis str. MC2 155]
gi|238055307|sp|A0QPD3.1|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
smegmatis str. MC2 155]
Length=320
Score = 531 bits (1369), Expect = 5e-149, Method: Compositional matrix adjust.
Identities = 249/307 (82%), Positives = 278/307 (91%), Gaps = 0/307 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRT S+ AGGLNW+SLPLKLFAGGNAKFW PADIDF+RDRADWE L++ ER+YATRL
Sbjct 1 MTRTHFDSIRAGGLNWSSLPLKLFAGGNAKFWDPADIDFSRDRADWEALTEREREYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C +FIAGEEAVT+DIQPFMSAMRAEGRL DEMYLTQFAFEEAKHTQVFRMWLDAVG+++D
Sbjct 61 CAEFIAGEEAVTKDIQPFMSAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGVTDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH ++++PAY QIF ELP L AL++DPSPAAQVRASV YNH+VEGMLALTGYYAWH+
Sbjct 121 LHSLIEEVPAYVQIFCEELPAALEALTSDPSPAAQVRASVVYNHVVEGMLALTGYYAWHR 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFET MNELIP+ALR
Sbjct 181 ICVDRGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWAVFETHMNELIPVALR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
L +EGFALYGD PF L + +FLQYS+D+GMRRFGTIS+ARGRP+AEIDVDY+P QLEDT
Sbjct 241 LTQEGFALYGDDIPFGLEEGEFLQYSSDRGMRRFGTISSARGRPLAEIDVDYTPLQLEDT 300
Query 301 FADEDRR 307
FADED R
Sbjct 301 FADEDER 307
>gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. MCS]
gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. KMS]
gi|123069734|sp|Q1B465.1|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|238055309|sp|A1UKW4.1|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB
(ribonucleotide reductase small chain) [Mycobacterium sp.
MCS]
gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium
sp. KMS]
Length=312
Score = 528 bits (1361), Expect = 4e-148, Method: Compositional matrix adjust.
Identities = 250/313 (80%), Positives = 279/313 (90%), Gaps = 1/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRS SLAAGGLNW S+PLKLFAGGNAKFW PADIDF+RDRADWE LS+ ERD+ATRL
Sbjct 1 MTRTRSDSLAAGGLNWNSMPLKLFAGGNAKFWDPADIDFSRDRADWESLSNLERDWATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C QFIAGEEAVT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKHTQVFRMWLDAVG+++D
Sbjct 61 CAQFIAGEEAVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
L YLDDLP+YRQ+FY ELP L AL+ DPSPAAQVRAS TYNH++EGM+ALTGYYAWH+
Sbjct 121 LQCYLDDLPSYRQMFYEELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHR 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R +LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFE RMNELIPLAL
Sbjct 181 ICVDRKVLPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWEVFENRMNELIPLALS 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
++ FALY D+ PF +K++F QY+ DKGMRRFGTIS+ARGR +AEIDVDYSP QLEDT
Sbjct 241 NTDDSFALY-DEIPFGFAKEEFQQYAADKGMRRFGTISSARGRALAEIDVDYSPLQLEDT 299
Query 301 FADEDRRTLAAAS 313
FA ED R LA ++
Sbjct 300 FAAEDSRVLATSA 312
>gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. JLS]
gi|238055308|sp|A3Q4Y5.1|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium
sp. JLS]
Length=312
Score = 526 bits (1356), Expect = 1e-147, Method: Compositional matrix adjust.
Identities = 249/313 (80%), Positives = 279/313 (90%), Gaps = 1/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRS SLAAGGLNW S+PLKLFAGGNAKFW PADIDF++DRADWE LS+ ERD+ATRL
Sbjct 1 MTRTRSDSLAAGGLNWDSMPLKLFAGGNAKFWDPADIDFSKDRADWESLSNLERDWATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C QFIAGEEAVT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKHTQVFRMWLDAVG+++D
Sbjct 61 CAQFIAGEEAVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
L YLDDLP+YRQ+FY ELP L AL+ DPSPAAQVRAS TYNH++EGM+ALTGYYAWH+
Sbjct 121 LQCYLDDLPSYRQMFYEELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHR 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R +LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW VFE RMNELIPLAL
Sbjct 181 ICVDRKVLPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWEVFENRMNELIPLALS 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
++ FALY D+ PF +K++F QY+ DKGMRRFGTIS+ARGR +AEIDVDYSP QLEDT
Sbjct 241 NTDDSFALY-DEIPFGFAKEEFQQYAADKGMRRFGTISSARGRALAEIDVDYSPLQLEDT 299
Query 301 FADEDRRTLAAAS 313
FA ED R LA ++
Sbjct 300 FAAEDSRVLATSA 312
>gi|333988855|ref|YP_004521469.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. JDM601]
gi|333484823|gb|AEF34215.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. JDM601]
Length=313
Score = 519 bits (1336), Expect = 3e-145, Method: Compositional matrix adjust.
Identities = 244/313 (78%), Positives = 270/313 (87%), Gaps = 0/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRT SLAAGGLNW SLPLKLFAGGNAKFW+PADIDF+RDR DWE L+D ERDYA RL
Sbjct 1 MTRTHYDSLAAGGLNWDSLPLKLFAGGNAKFWNPADIDFSRDRDDWESLTDRERDYAVRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C QFIAGEE+VT+DIQPFM+AMRAEGRL DEMYLTQFA+EEAKHTQVFRMWLDAVGI++D
Sbjct 61 CAQFIAGEESVTQDIQPFMAAMRAEGRLGDEMYLTQFAYEEAKHTQVFRMWLDAVGITDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH YLD LP+YR+IF ELPE L LS DPSPA+QVRA+VTYNH VEG LALTGYYAWHK
Sbjct 121 LHGYLDALPSYRRIFNEELPESLAGLSVDPSPASQVRAAVTYNHFVEGTLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICV+R +LPGMQ L+ I DDERRHMAWGTFTCRRHVAADDANW VFETRMNEL+PL +
Sbjct 181 ICVQRGVLPGMQALIGHIADDERRHMAWGTFTCRRHVAADDANWEVFETRMNELLPLLVS 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
EG +YG+ PF LS D+ LQYS DKGMRRFGTIS+ARGRPV EID+DYSP QLEDT
Sbjct 241 YNAEGSEIYGEDVPFGLSSDELLQYSMDKGMRRFGTISSARGRPVGEIDLDYSPVQLEDT 300
Query 301 FADEDRRTLAAAS 313
FADEDR+ LA ++
Sbjct 301 FADEDRKMLAVSA 313
>gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=313
Score = 507 bits (1305), Expect = 1e-141, Method: Compositional matrix adjust.
Identities = 242/313 (78%), Positives = 264/313 (85%), Gaps = 0/313 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
M TR SL AGGLNW S+PL+LFAGG AK W PA+IDF+RD ADWE LSD ER Y TRL
Sbjct 1 MATTRYHSLGAGGLNWESVPLRLFAGGIAKLWDPANIDFSRDSADWEALSDRERVYVTRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C FIAGEEAVT+DIQPFM+AMRAEGRL DEMYLTQFAFEEAKHTQ FR+WLDAVG+ +D
Sbjct 61 CAGFIAGEEAVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHTQAFRLWLDAVGVRDD 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LH +LD PAYRQ+F EL E LN L DPSPAAQVRASVTYNHI+EGMLALTGYYAWHK
Sbjct 121 LHSFLDQTPAYRQLFDEELHESLNTLYVDPSPAAQVRASVTYNHIIEGMLALTGYYAWHK 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
ICVE ILPGMQ+L+R IGDDERRHMAWGTFTCRRHVAADD NWTVFETRMNELIPL R
Sbjct 181 ICVEHGILPGMQQLIRHIGDDERRHMAWGTFTCRRHVAADDTNWTVFETRMNELIPLGQR 240
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
LI+EG ALYGD PF+LS D+ Y+TDKGMRRF TIS+ARGRP EID+DYSP QLEDT
Sbjct 241 LIDEGSALYGDDIPFNLSIDEMRTYATDKGMRRFSTISSARGRPPEEIDLDYSPLQLEDT 300
Query 301 FADEDRRTLAAAS 313
FADED R LA ++
Sbjct 301 FADEDARVLAGSA 313
>gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
jostii RHA1]
gi|123045538|sp|Q0S392.1|RIR2H_RHOSR RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|110822710|gb|ABG97994.1| probable ribonucleoside-diphosphate reductase [Rhodococcus jostii
RHA1]
Length=324
Score = 419 bits (1077), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 195/307 (64%), Positives = 235/307 (77%), Gaps = 1/307 (0%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL AGGLNW + PL+LF GNAKFW+P D+DF+RD DWE L+ +++ +T L QFIAG
Sbjct 19 SLRAGGLNWDAFPLRLFTKGNAKFWNPTDLDFSRDAEDWEGLNSEQQRNSTYLVAQFIAG 78
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVTEDIQPFM AM AEGR DEMYLTQF FEEAKHTQVFR+W+DAVG++ DLH ++ +
Sbjct 79 EEAVTEDIQPFMKAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRDLHPFVAE 138
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YRQ+FY ELP L L DPSP QVRASVTYNH++EG LALTGYYAW K+C R I
Sbjct 139 NPYYRQLFYEELPGSLKVLETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGI 198
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADD+NW V + RM EL+PLAL +I+
Sbjct 199 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDSNWGVVQERMAELMPLALGMIDWVNK 258
Query 248 LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADEDRR 307
+ Q P+ L +F+ Y+ D+ RR G I +ARGRPV EID+DYSP LE+ F +ED +
Sbjct 259 QFEVQ-PYGLDDQEFIAYAADRAQRRLGAIESARGRPVEEIDLDYSPEALEEKFGEEDAK 317
Query 308 TLAAASA 314
++ A+
Sbjct 318 AMSEAAG 324
>gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
opacus B4]
gi|226244175|dbj|BAH54523.1| hypothetical protein [Rhodococcus opacus B4]
Length=324
Score = 419 bits (1076), Expect = 4e-115, Method: Compositional matrix adjust.
Identities = 196/307 (64%), Positives = 234/307 (77%), Gaps = 1/307 (0%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL GGLNW + PL+LF GNAKFW+P D+DF+RD DWE L+ +++ +T L QFIAG
Sbjct 19 SLRDGGLNWDAFPLRLFTKGNAKFWNPTDLDFSRDAEDWEGLNSEQQRNSTYLVAQFIAG 78
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVTEDIQPFM AM AEGR DEMYLTQF FEEAKHTQVFR+W+DAVG++ DLH ++ D
Sbjct 79 EEAVTEDIQPFMKAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRDLHPFVAD 138
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YRQ+FY ELP L L DPSPA QVRASVTYNH++EG LALTGYYAW K+C R I
Sbjct 139 NPFYRQLFYEELPGSLKVLETDPSPANQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGI 198
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADD NW V + RM EL+PLAL +I+
Sbjct 199 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDGNWGVVQERMAELMPLALGMIDWVNK 258
Query 248 LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADEDRR 307
+ Q P+ L +F+ Y+ D+ RR G I +ARGRPV EID+DYSP LE+ F +ED +
Sbjct 259 QFEVQ-PYGLDDQEFIAYAADRAQRRLGAIESARGRPVEEIDLDYSPEALEEKFGEEDAQ 317
Query 308 TLAAASA 314
++ A+
Sbjct 318 AMSEAAG 324
>gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora
erythraea NRRL 2338]
gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora
erythraea NRRL 2338]
gi|238055312|sp|A4F7B2.1|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide
reductase R2 subunit homolog; AltName: Full=Ribonucleotide
reductase small subunit homolog
gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora
erythraea NRRL 2338]
Length=317
Score = 417 bits (1073), Expect = 8e-115, Method: Compositional matrix adjust.
Identities = 200/305 (66%), Positives = 233/305 (77%), Gaps = 0/305 (0%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL AGGLNW SLPL+LF GNAKFW PADIDFTRD DW+ L+++ER LC+QFIAG
Sbjct 13 SLRAGGLNWDSLPLRLFGKGNAKFWDPADIDFTRDAEDWQGLTEEERRSVAMLCSQFIAG 72
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVT+D+QPFM+AM AEGR DEMYLTQF FEEAKHTQVFR+W+DAVG++ DLH ++ +
Sbjct 73 EEAVTQDLQPFMAAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTGDLHSHVAE 132
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YR IFY ELP LNAL DPSPA QVRASVTYNH+VEG LALTGY+AW KIC R I
Sbjct 133 NPGYRAIFYEELPRSLNALHDDPSPANQVRASVTYNHVVEGTLALTGYFAWQKICRSRGI 192
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
LPGMQE+VRRIGDDERRHMAWGTFTCRRHVAAD++NW V + +M L+PLA+ I+
Sbjct 193 LPGMQEVVRRIGDDERRHMAWGTFTCRRHVAADESNWDVVQEQMQHLLPLAVTQIQWRPE 252
Query 248 LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADEDRR 307
++ PF L D+ Y++D+ RR G IS ARG PV +IDVD SP QLED F ED
Sbjct 253 DAPEETPFRLDIDELAAYASDRAGRRLGAISAARGVPVEQIDVDASPEQLEDQFGVEDAA 312
Query 308 TLAAA 312
L A
Sbjct 313 ALEKA 317
>gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
erythropolis SK121]
gi|229323530|gb|EEN89288.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
erythropolis SK121]
Length=318
Score = 416 bits (1069), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 198/321 (62%), Positives = 235/321 (74%), Gaps = 12/321 (3%)
Query 1 MTRTRSG-----SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERD 55
MT T G SL +GGLNW S PL+LF GNAKFW+P D+DF++D DW++L+ +++
Sbjct 1 MTVTSPGREGFSSLRSGGLNWDSFPLRLFTKGNAKFWNPTDLDFSQDARDWQELTSEQQR 60
Query 56 YATRLCTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV 115
AT LC QFIAGEEAVTEDIQPFM AM EGR DEMYLTQF FEEAKHTQVFR+W+D V
Sbjct 61 SATFLCAQFIAGEEAVTEDIQPFMKAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEV 120
Query 116 GISEDLHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGY 175
G++ DLH Y+ D P YRQ+FY ELP L L DPSP QVRASVTYNH++EG LALTGY
Sbjct 121 GLTSDLHSYVADNPYYRQLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGY 180
Query 176 YAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELI 235
YAW K+C R ILPGMQ+LVR+IGDDERRHMAWGTFTCRRHVAADD NW V + RM EL+
Sbjct 181 YAWQKVCATRGILPGMQQLVRKIGDDERRHMAWGTFTCRRHVAADDHNWDVVQQRMGELM 240
Query 236 PLALRLIEEGFALYGDQ---PPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDY 292
P+AL +I DQ PF L +FL+Y+ D+ RR I +ARGR VAEID+DY
Sbjct 241 PMALGMIN----WVNDQFEVQPFGLDNQEFLEYAADRAQRRLSAIESARGRDVAEIDLDY 296
Query 293 SPAQLEDTFADEDRRTLAAAS 313
SP LE+ F ED ++ A+
Sbjct 297 SPETLEEKFGAEDAAAMSEAA 317
>gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate reductase nrdb [Rhodococcus equi 103S]
gi|325675746|ref|ZP_08155430.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
equi ATCC 33707]
gi|311889965|emb|CBH49283.1| ribonucleoside-diphosphate reductase NrdB [Rhodococcus equi 103S]
gi|325553717|gb|EGD23395.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
equi ATCC 33707]
Length=323
Score = 415 bits (1066), Expect = 6e-114, Method: Compositional matrix adjust.
Identities = 193/298 (65%), Positives = 230/298 (78%), Gaps = 1/298 (0%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL GGLNW + PL+LF GNAKFW+PADIDFT+D DW L+ +E+ +T LCTQFIAG
Sbjct 13 SLRKGGLNWDAFPLRLFVKGNAKFWNPADIDFTQDAEDWASLTSEEKRSSTYLCTQFIAG 72
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVTEDIQPFM AM AEGR DEMYLTQF FEEAKH QVFR W+DAVG+ DLH ++ +
Sbjct 73 EEAVTEDIQPFMKAMAAEGRFNDEMYLTQFCFEEAKHVQVFRRWMDAVGLDGDLHPFVAE 132
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YR +FY ELP L L DPSPA Q+RASVTYNH++EG LALTGYYAW ++C ER I
Sbjct 133 NPHYRTLFYEELPRSLRILETDPSPANQIRASVTYNHVIEGSLALTGYYAWQRVCTERGI 192
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
PGMQELVRRIGDDERRHMAWGTFTCRRHVAADD+NW + + RM EL+P AL +I+
Sbjct 193 FPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDSNWDLVQQRMGELLPHALDMIQWVND 252
Query 248 LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADED 305
+ ++PPF + +L+Y+ D+ RR G I +ARGRPV EID+DYSP LE+TF +ED
Sbjct 253 QF-EEPPFGIDPAVYLEYAADRAQRRLGAIESARGRPVEEIDLDYSPEALEETFGEED 309
>gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 [Rhodococcus erythropolis PR4]
gi|226184563|dbj|BAH32667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=318
Score = 415 bits (1066), Expect = 6e-114, Method: Compositional matrix adjust.
Identities = 197/321 (62%), Positives = 235/321 (74%), Gaps = 12/321 (3%)
Query 1 MTRTRSG-----SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERD 55
MT T G +L +GGLNW S PL+LF GNAKFW+P D+DF++D DW++L+ +++
Sbjct 1 MTVTSPGREGFSTLRSGGLNWDSFPLRLFTKGNAKFWNPTDLDFSQDARDWQELTSEQQR 60
Query 56 YATRLCTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV 115
AT LC QFIAGEEAVTEDIQPFM AM EGR DEMYLTQF FEEAKHTQVFR+W+D V
Sbjct 61 SATFLCAQFIAGEEAVTEDIQPFMKAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEV 120
Query 116 GISEDLHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGY 175
G++ DLH Y+ D P YRQ+FY ELP L L DPSP QVRASVTYNH++EG LALTGY
Sbjct 121 GLTSDLHSYVADNPYYRQLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGY 180
Query 176 YAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELI 235
YAW K+C R ILPGMQ+LVR+IGDDERRHMAWGTFTCRRHVAADD NW V + RM EL+
Sbjct 181 YAWQKVCATRGILPGMQQLVRKIGDDERRHMAWGTFTCRRHVAADDHNWDVVQQRMGELM 240
Query 236 PLALRLIEEGFALYGDQ---PPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDY 292
P+AL +I DQ PF L +FL+Y+ D+ RR I +ARGR VAEID+DY
Sbjct 241 PMALGMIN----WVNDQFEVQPFGLDNQEFLEYAADRAQRRLSAIESARGRDVAEIDLDY 296
Query 293 SPAQLEDTFADEDRRTLAAAS 313
SP LE+ F ED ++ A+
Sbjct 297 SPETLEEKFGAEDAAAMSEAA 317
>gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis T17]
gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium
tuberculosis T17]
Length=210
Score = 400 bits (1029), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 196/210 (94%), Positives = 197/210 (94%), Gaps = 0/210 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFW PADIDFTRDRADWEKLSDDERDYATRL
Sbjct 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWDPADIDFTRDRADWEKLSDDERDYATRL 60
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED
Sbjct 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWH+
Sbjct 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHR 180
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGT 210
PGMQELVRRIGDDERR GT
Sbjct 181 SVWNAQSFPGMQELVRRIGDDERRTWLGGT 210
>gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta [Saccharomonospora
viridis DSM 43017]
gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
DSM 43017]
Length=328
Score = 396 bits (1018), Expect = 2e-108, Method: Compositional matrix adjust.
Identities = 193/309 (63%), Positives = 233/309 (76%), Gaps = 10/309 (3%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL GGL+W +LPL+LFA GN KFW PADIDF+ D DWEKL+D +R AT LC QF AG
Sbjct 16 SLRRGGLDWNTLPLRLFAKGNRKFWDPADIDFSVDARDWEKLTDRQRLSATYLCAQFAAG 75
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVTEDIQPF+ AM AEGRL DEMYL QF FEEAKHT+ FR W+DAVG+++DLH ++ +
Sbjct 76 EEAVTEDIQPFLRAMAAEGRLGDEMYLAQFCFEEAKHTEAFRRWMDAVGLTDDLHPFVAE 135
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YR++FY ELPE L L+ DPSP QVRASVTYNH++EG LALTGYYAW K+CV R I
Sbjct 136 NPHYRKLFYEELPESLGVLAEDPSPRNQVRASVTYNHVIEGSLALTGYYAWQKLCVSRGI 195
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
LPGM+ELVRR+ DDERRHMAWGTFTCRRHVAADD+ W V + RM+EL+P AL +IE
Sbjct 196 LPGMRELVRRVSDDERRHMAWGTFTCRRHVAADDSLWEVVQQRMDELLPHALGMIE---- 251
Query 248 LYGDQPPFDLSKD----DFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFAD 303
FD S D +F++Y+ D+ RR I+ ARG VA+ID+D+SP +LE+TF +
Sbjct 252 --WVNRQFDESSDGDNAEFVRYAADRAQRRLSAIAAARGANVADIDLDHSPERLEETFGE 309
Query 304 EDRRTLAAA 312
ED R A A
Sbjct 310 EDERAFAEA 318
>gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
gi|299799814|gb|ADJ50189.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
gi|340531981|gb|AEK47186.1| ribonucleotide-diphosphate reductase subunit beta [Amycolatopsis
mediterranei S699]
Length=322
Score = 395 bits (1015), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 187/300 (63%), Positives = 225/300 (75%), Gaps = 1/300 (0%)
Query 3 RTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCT 62
RT SL GGLNW S PL+LF GN KFW+PADIDF+R+R W+ L+ +++ T L
Sbjct 9 RTGFSSLRKGGLNWDSFPLRLFVKGNKKFWNPADIDFSREREGWDTLNPEQQRSTTYLVA 68
Query 63 QFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLH 122
QFIAGEEAVTEDIQPFM AM A GR DEMYLTQF FEEAKHT+VFR W+DAVG++EDLH
Sbjct 69 QFIAGEEAVTEDIQPFMRAMSATGRFGDEMYLTQFCFEEAKHTEVFRRWMDAVGLTEDLH 128
Query 123 RYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKIC 182
++ + P YR++FY ELP+ L AL DPSP Q+RASVTYNH++EG LALTGYY+W IC
Sbjct 129 PFVAENPHYRKLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLIC 188
Query 183 VERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLI 242
+ ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADD+ W RM EL+P AL +I
Sbjct 189 TQHDILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDSLWDAVLQRMGELLPHALNMI 248
Query 243 EEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFA 302
+ + ++ PFD + +QY+ D+ RR G I +ARG PV +IDVDYSP QLE+TF
Sbjct 249 QWVQDQF-EELPFDNDPQEIVQYAADRAQRRLGAIESARGMPVEQIDVDYSPEQLEETFG 307
>gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces
sp. AA4]
gi|302439451|gb|EFL11267.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces
sp. AA4]
Length=323
Score = 392 bits (1008), Expect = 3e-107, Method: Compositional matrix adjust.
Identities = 185/300 (62%), Positives = 225/300 (75%), Gaps = 3/300 (1%)
Query 5 RSG--SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCT 62
RSG SL GGLNW S PL+LF GN KFW+PAD+DF+++R W+ L+ +++ T L
Sbjct 9 RSGFSSLRKGGLNWDSFPLRLFVKGNKKFWNPADLDFSKEREGWDSLTPEQQRSTTYLVA 68
Query 63 QFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLH 122
QFIAGEEAVTEDIQPFM AM A GR DEMYLTQF FEEAKH +VFR W+DAVG+ +DLH
Sbjct 69 QFIAGEEAVTEDIQPFMRAMSATGRFGDEMYLTQFCFEEAKHVEVFRRWMDAVGLDDDLH 128
Query 123 RYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKIC 182
Y+ + P YR++FY ELP+ L AL DPSP Q+RASVTYNH++EG LALTGYY+W IC
Sbjct 129 SYVAENPHYRKLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLIC 188
Query 183 VERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLI 242
+ ILPGMQELVR IGDDERRHMAWGTFTCRRHVAADDA W + RM EL+P AL +I
Sbjct 189 TQNQILPGMQELVRHIGDDERRHMAWGTFTCRRHVAADDAMWDAVQERMGELLPHALGMI 248
Query 243 EEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFA 302
+ + ++ PFD ++ LQY+ D+ RR G I +ARG PV +ID+DYSP QLE+TF
Sbjct 249 QWVQDQF-EEVPFDNDPEELLQYAADRAQRRLGAIESARGTPVEQIDLDYSPEQLEETFG 307
>gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
gi|283813089|gb|ADB34928.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
Length=319
Score = 390 bits (1002), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 188/311 (61%), Positives = 228/311 (74%), Gaps = 1/311 (0%)
Query 1 MTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRL 60
+ R SL AGG +W +LPL+LF GN KFW+P D+DF++D DW++L+ +E+D A L
Sbjct 8 LHRQGFSSLRAGGFHWDALPLRLFDKGNRKFWNPRDLDFSQDAEDWQRLTPNEKDNAMML 67
Query 61 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120
C QFIAGEEAVTED+QPF+ AM AEGR DEMYLTQF FEEAKHT VFR+WLDAVG++ED
Sbjct 68 CAQFIAGEEAVTEDLQPFLQAMAAEGRFGDEMYLTQFCFEEAKHTAVFRLWLDAVGVTED 127
Query 121 LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHK 180
LHRY+++ P YR IFY LP L +L+ DPSPA QVRASVTYNH+VEG LALTGY+AW+
Sbjct 128 LHRYVENNPGYRAIFYEALPVALKSLADDPSPANQVRASVTYNHVVEGTLALTGYHAWNL 187
Query 181 ICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALR 240
+C R ILPGMQEL+R IGDDERRHMAWGTFTCRRHVAAD ANW V M +L+P AL
Sbjct 188 LCTGRRILPGMQELIRHIGDDERRHMAWGTFTCRRHVAADAANWKVVTDTMEDLLPHALV 247
Query 241 LIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDT 300
I+ + PP ++ + Y+ D+ RR G I +A G VA ID+DYSP +LED
Sbjct 248 QIQWAMENSPELPP-EIDPTALMTYAGDRATRRLGAIESALGADVAGIDLDYSPEKLEDD 306
Query 301 FADEDRRTLAA 311
F ED LAA
Sbjct 307 FGAEDSAALAA 317
>gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length=331
Score = 389 bits (998), Expect = 4e-106, Method: Compositional matrix adjust.
Identities = 188/309 (61%), Positives = 225/309 (73%), Gaps = 5/309 (1%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL GGLNW SLPLKLFA GNA+FW+PADID +RD DWE L + R RLC F+AG
Sbjct 21 SLRGGGLNWDSLPLKLFAKGNARFWNPADIDLSRDAEDWEGLGEGARARILRLCAFFVAG 80
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVTEDIQPF+ AM AEGRL DEMYLTQFAFEEA+H Q FR+WLDA+G+ EDLH Y+D
Sbjct 81 EEAVTEDIQPFLRAMAAEGRLGDEMYLTQFAFEEARHVQAFRLWLDALGVHEDLHGYVDA 140
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YR +FY ELP L AL DPSP QVRASVTYNH++EG LALTGYYAW+ +C +
Sbjct 141 NPGYRTLFYEELPSSLEALLEDPSPRNQVRASVTYNHVIEGSLALTGYYAWNHLCTALDV 200
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
PGM+ +VR IGDDERRHMAWGTFTCRRHVAADDANW V R++EL+P +E G
Sbjct 201 FPGMRRIVRMIGDDERRHMAWGTFTCRRHVAADDANWDVVRDRLDELLPHVTSTVERGEE 260
Query 248 LYGDQPP--FDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADED 305
GD ++L + ++Y+ D+ +RR G I +ARG PV+ ID+D +P LE+ F +ED
Sbjct 261 PSGDPATRRYELPPGELVRYAGDRALRRLGAIGSARGVPVSRIDLDATPEDLEERFGEED 320
Query 306 R---RTLAA 311
R R LAA
Sbjct 321 REAVRRLAA 329
>gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01-04060 [Rhodococcus opacus B4]
gi|226245558|dbj|BAH55905.1| hypothetical protein [Rhodococcus opacus B4]
Length=326
Score = 385 bits (989), Expect = 5e-105, Method: Compositional matrix adjust.
Identities = 188/308 (62%), Positives = 224/308 (73%), Gaps = 1/308 (0%)
Query 3 RTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCT 62
R+ GSL+ GGL S +KLF GN KFW P IDF++D D+ LSD+E+ L
Sbjct 12 RSGFGSLSEGGLRMNSFAMKLFRKGNKKFWDPEAIDFSQDAQDFAGLSDEEKRLTCILAA 71
Query 63 QFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLH 122
FIAGEE+V +D+QPFMSAM AEGRLADE YLTQF FEEAKH Q FR+W DAVG+S DLH
Sbjct 72 HFIAGEESVAQDLQPFMSAMAAEGRLADEAYLTQFTFEEAKHMQAFRLWFDAVGLSSDLH 131
Query 123 RYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKIC 182
Y+D Y++IF ELP+ L AL+ DPSPAAQ+RASVTYNH+VEG LALTGYYAW K+C
Sbjct 132 EYVDYSEPYQRIFTEELPKSLYALTTDPSPAAQIRASVTYNHVVEGCLALTGYYAWAKVC 191
Query 183 VERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLI 242
R ILPGMQE+++ IGDDERRHMAWGTFTCRRHVAADD NW V + RM EL+ AL+LI
Sbjct 192 KSRNILPGMQEVIKHIGDDERRHMAWGTFTCRRHVAADDRNWDVVDERMQELLEPALQLI 251
Query 243 EEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFA 302
F + D+ PF ++ D+ Y DK RR +I +ARGRP+ EID DYSP QLED FA
Sbjct 252 VRIFDTF-DEIPFGITIDEMTDYGMDKLNRRLESIESARGRPLEEIDEDYSPMQLEDKFA 310
Query 303 DEDRRTLA 310
ED L+
Sbjct 311 AEDELQLS 318
>gi|343924420|ref|ZP_08763969.1| hypothetical protein GOALK_016_00180 [Gordonia alkanivorans NBRC
16433]
gi|343765564|dbj|GAA10895.1| hypothetical protein GOALK_016_00180 [Gordonia alkanivorans NBRC
16433]
Length=318
Score = 384 bits (987), Expect = 7e-105, Method: Compositional matrix adjust.
Identities = 182/299 (61%), Positives = 222/299 (75%), Gaps = 1/299 (0%)
Query 7 GSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIA 66
SL GGLNW S PL+LF GN++FW P IDF+RD DW +L+D++R AT L +QFIA
Sbjct 15 SSLRPGGLNWDSFPLRLFIKGNSRFWDPMAIDFSRDAQDWVELNDEQRRSATYLVSQFIA 74
Query 67 GEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLD 126
GEEAVTEDIQPFM AM EGR DEMYLTQF FEEAKHTQVFRMW+D+VG+ DL ++
Sbjct 75 GEEAVTEDIQPFMKAMATEGRFGDEMYLTQFCFEEAKHTQVFRMWMDSVGLRGDLQAFVS 134
Query 127 DLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERA 186
+ P YR++FY ELPE L+AL D SP Q+RASVTYNH++EG LALTGY+AW K+C
Sbjct 135 ENPFYRRLFYEELPESLHALEHDASPRNQIRASVTYNHVIEGSLALTGYHAWQKVCTRFD 194
Query 187 ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGF 246
I PGMQ+L+R I DDERRHMAWGTFTCRRHVAADD+ W RM+EL+PLAL +I+
Sbjct 195 IFPGMQKLIRFISDDERRHMAWGTFTCRRHVAADDSLWATVGERMDELLPLALGMIDWVN 254
Query 247 ALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADED 305
+ D+ PF L ++FL Y+ D+ RR I +ARGR VA+IDVDYSP LED ++D
Sbjct 255 QQF-DEQPFGLDNNEFLTYAADRAQRRLSAIESARGRSVADIDVDYSPEVLEDAMGEDD 312
>gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia neofelifaecis
NRRL B-59395]
gi|326197646|gb|EGD54834.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia neofelifaecis
NRRL B-59395]
Length=297
Score = 376 bits (966), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 177/297 (60%), Positives = 218/297 (74%), Gaps = 1/297 (0%)
Query 14 LNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTE 73
+NW S PL+LF GNAK W PA IDF++D DW L+DD+R AT L +QF+AGEEAVTE
Sbjct 1 MNWQSFPLRLFTKGNAKTWDPASIDFSQDALDWAGLTDDQRRSATYLVSQFVAGEEAVTE 60
Query 74 DIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQ 133
DI+PFM+AM AE R DEMYL QF +EAKH Q FR+W+DAVG++EDLH Y+ + P YR+
Sbjct 61 DIRPFMNAMSAEDRFGDEMYLAQFCLDEAKHAQGFRLWMDAVGLTEDLHPYVAENPFYRE 120
Query 134 IFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQE 193
+FY +LP+ L L+ DPSP QVRASVTYNH++EG LALTGYYAW +ICVE ILPGMQ+
Sbjct 121 LFYEQLPQALRILNTDPSPVNQVRASVTYNHVIEGSLALTGYYAWRRICVESEILPGMQQ 180
Query 194 LVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFALYGDQP 253
L+ I +DE RHMAWGTFTCRRHVAADD+ W V R EL+PLA+ +I+ + D+
Sbjct 181 LIGSIAEDETRHMAWGTFTCRRHVAADDSLWQVVTDRFGELVPLAMGMIKWVDGQF-DEA 239
Query 254 PFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADEDRRTLA 310
PF + D FL Y+ D+ RR I +ARGRPV EIDVDYSP LE+ F ED +L
Sbjct 240 PFGIDNDVFLTYAADRAQRRLHAIESARGRPVEEIDVDYSPVTLEEHFNAEDEASLG 296
>gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
dioxanivorans CB1190]
gi|326953888|gb|AEA27585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
dioxanivorans CB1190]
Length=324
Score = 369 bits (948), Expect = 3e-100, Method: Compositional matrix adjust.
Identities = 185/314 (59%), Positives = 227/314 (73%), Gaps = 3/314 (0%)
Query 3 RTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCT 62
RT SLA GLN S P++LFA GNA+ W+PADIDF++D D ++DDER + L
Sbjct 10 RTGFASLANKGLNRDSFPMRLFAKGNARHWNPADIDFSQDARDIAAMTDDERWWTFALAA 69
Query 63 QFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLH 122
QF+AGEE+VT+D+QPF++AM AEGRLADEMYLTQF FEEAKHT FR W DAVG++EDLH
Sbjct 70 QFMAGEESVTQDLQPFVAAMAAEGRLADEMYLTQFVFEEAKHTDAFRRWFDAVGMTEDLH 129
Query 123 RYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKIC 182
+++ Y QIF ELP L AL+ADPSP QVRASVTYNHIVEG LALTGY+ W KIC
Sbjct 130 PFIEFNEHYMQIFTQELPASLYALAADPSPRNQVRASVTYNHIVEGTLALTGYFTWAKIC 189
Query 183 VERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLI 242
R ILPGMQ++++ IGDDERRHMAWGTFTCRRHVAADDA + V + RM EL+ ++ ++
Sbjct 190 TSRGILPGMQQVIKHIGDDERRHMAWGTFTCRRHVAADDAMFDVVDERMQELMVPSMGVV 249
Query 243 EEGFALY---GDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLED 299
F G Q PFD+ ++ +Y+ DK RR G I +ARG +A IDVD SP LE+
Sbjct 250 TGTFEKVEADGGQVPFDVDMNELAEYAMDKLGRRLGAIESARGADLAVIDVDASPEALEE 309
Query 300 TFADEDRRTLAAAS 313
F ED R LAAA+
Sbjct 310 RFHAEDSRELAAAA 323
>gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
sp. P1]
Length=326
Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/308 (58%), Positives = 223/308 (73%), Gaps = 1/308 (0%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL+AG L S P++LF+ GN K W P+ IDFT+D D+ ++DDER L QF+AG
Sbjct 18 SLSAGRLRADSFPMRLFSKGNGKHWDPSAIDFTQDAEDFAAMTDDERWQTCALAAQFMAG 77
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EE+VT+D+QPF++AM AEGRL DEMYLTQF +EEAKHTQ FR+W DAVG++ DLH Y++
Sbjct 78 EESVTQDLQPFVAAMAAEGRLGDEMYLTQFVYEEAKHTQAFRLWFDAVGMTGDLHSYIEH 137
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
Y +IF LPE L AL+ DPSPA Q+RASVTYNH+VEG LALTGY+ WHKIC ER I
Sbjct 138 NEHYLEIFTRALPESLYALADDPSPANQLRASVTYNHVVEGTLALTGYFTWHKICAERGI 197
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA 247
LPGMQ++++ IGDDERRHMAWGTFTCRRHVAADDA W V + RM EL+ A+ ++
Sbjct 198 LPGMQKVIKHIGDDERRHMAWGTFTCRRHVAADDALWDVVDGRMQELMVPAMGVVTGTVD 257
Query 248 LYGD-QPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADEDR 306
+ D Q PF + ++ +Y+ DK RR G I +ARG + ID D P +LE+ F ED+
Sbjct 258 RWPDGQAPFGIDLNELAEYAMDKVGRRLGAIESARGADLLTIDADAEPERLEERFHAEDQ 317
Query 307 RTLAAASA 314
R LAAA+A
Sbjct 318 RILAAAAA 325
>gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subunit beta-like protein [Gordonia
bronchialis DSM 43247]
gi|262087660|gb|ACY23628.1| Ribonucleotide reductase beta subunit-like protein [Gordonia
bronchialis DSM 43247]
Length=324
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/307 (52%), Positives = 201/307 (66%), Gaps = 7/307 (2%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
SL GGL+W L LF GNA+FW P IDF+ D DW ++ DDER + T L Q AG
Sbjct 22 SLRRGGLDWDEFGLHLFVTGNARFWDPRGIDFSTDALDWREMRDDERRFVTYLVAQICAG 81
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAVT D+QPF A A+GRL DEMYL+Q AFE+AKHT+VFR+W+DA G+ +DL+ LD
Sbjct 82 EEAVTRDVQPFGQAAAADGRLGDEMYLSQVAFEKAKHTEVFRLWMDAAGLVDDLNPVLDT 141
Query 128 LPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAI 187
P YRQ+ ELP L + DPSP Q+RA +T++ ++ G LA TG+ +IC I
Sbjct 142 NPFYRQLIVEELPAALRRMETDPSPENQIRAVITFHQVIGGTLACTGHRMLQRICSAYGI 201
Query 188 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLI---EE 244
LPGM+ L+R I DERRHMAWGT+TCRR VAADDA V TRM+EL+PLAL +I +
Sbjct 202 LPGMRTLIRMISTDERRHMAWGTYTCRRLVAADDALADVAVTRMSELMPLALGMINWLDG 261
Query 245 GFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYSPAQLEDTFADE 304
FA PFDLS +F+ Y+ D+ RR I +ARG V +++ D+SP LED F +E
Sbjct 262 EFAPL----PFDLSTAEFIAYAADRSRRRLDAIGSARGLTVEQVEYDHSPEALEDVFGEE 317
Query 305 DRRTLAA 311
D L +
Sbjct 318 DSAALGS 324
>gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
gi|313467054|gb|EFR62570.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
Length=349
Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/280 (47%), Positives = 181/280 (65%), Gaps = 7/280 (2%)
Query 13 GLNWASLPLKLFAGGNAKF--WHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEA 70
GLN P++L+ KF W P ID ++DR DW L+D ++D RL + F AGEE+
Sbjct 37 GLNHDLPPMRLYHKAK-KFGTWDPRAIDLSQDREDWNLLNDAQKDALLRLVSLFAAGEES 95
Query 71 VTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV-GIS-EDLHRYLDDL 128
VT D+ P + + EGRL +EM+LT F +EEAKHT+ R +LD V G+S DLH Y
Sbjct 96 VTLDLLPLIMVIAREGRLEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGADLHHY--HT 153
Query 129 PAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAIL 188
P+YR+IFY ELP +N L DPSPAAQ ASVTYN IVEG+LA TGYYA+++ + ++
Sbjct 154 PSYRKIFYEELPRAMNRLLEDPSPAAQAEASVTYNLIVEGVLAETGYYAFYRTLQRQGVM 213
Query 189 PGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFAL 248
PG + +R DE RH+A+G F +R VAADDA W V + R+N+L+P AL + E +A
Sbjct 214 PGFIQGIRNFQRDESRHLAYGVFLLQRLVAADDAIWQVIDRRLNDLLPYALGVTHEIYAA 273
Query 249 YGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEI 288
YGDQ PF++ + +F+ Y+ + R I ARG+ +AE+
Sbjct 274 YGDQHPFEVDQKEFIDYAIKQFSLRAQRIEQARGKSLAEV 313
>gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
Length=359
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/280 (46%), Positives = 181/280 (65%), Gaps = 7/280 (2%)
Query 13 GLNWASLPLKLFAGGNAKF--WHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEA 70
GLN P++L+ KF W P ID +D+ DW+ L+D ++D RL + F AGEE+
Sbjct 31 GLNHDLPPMRLYHKAK-KFGTWDPRAIDLRQDKEDWKLLNDAQKDALLRLVSLFAAGEES 89
Query 71 VTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV-GIS-EDLHRYLDDL 128
VT D+ P + + EGRL +EM+LT F +EEAKHT+ R +LD V G+S EDLH Y
Sbjct 90 VTLDLLPLIMVIAREGRLEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGEDLHHY--HT 147
Query 129 PAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAIL 188
P+Y++IFY ELP+ +N L DPSPAAQ ASVTYN IVEG+LA TGYYA+++ + ++
Sbjct 148 PSYKKIFYEELPQAMNRLLDDPSPAAQAEASVTYNLIVEGVLAETGYYAFYRTLQRQGVM 207
Query 189 PGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFAL 248
PG + +R DE RH+A+G F +R VAADD+ W V + R+N L+P AL + E +A
Sbjct 208 PGFVQGIRNFQRDESRHLAYGVFLLQRLVAADDSIWNVIDRRLNHLLPYALGVTHEIYAS 267
Query 249 YGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEI 288
YG + PF++ + +F+ Y+ + R I ARG+ +AE+
Sbjct 268 YGGEHPFEVDQQEFIDYAIKQFSLRAQRIEQARGKSLAEV 307
>gi|339288041|gb|AEJ42151.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length=317
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/290 (43%), Positives = 174/290 (60%), Gaps = 17/290 (5%)
Query 14 LNWASLPLKLF-AGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVT 72
LN + LP++L+ W P DIDFT+D+ DW+ +++ ER RLC+ F+AGEEAVT
Sbjct 18 LNHSILPMRLYHKAKKLGTWDPRDIDFTKDKEDWQGMNEAERRVILRLCSLFVAGEEAVT 77
Query 73 EDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV-GISEDLHRYLDDLPAY 131
D+ P + A+ EGRL +EMYLT F FEEAKHT+VFR +LD V G + DL + D Y
Sbjct 78 LDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDLSVFHKD--HY 135
Query 132 RQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGM 191
R+IFY LP+ + L DPSP AQ ASVTYN +VEG+LA TGYYA++ + LPG+
Sbjct 136 RKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGL 195
Query 192 QELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA---- 247
+ +R + DE RH+ +GT+ R ++ + W V R+N L+P A+ ++++ A
Sbjct 196 IQAIRLLQRDESRHIGYGTYLLSRLISENAHIWDVVNRRINLLLPHAIGVVQDLNAELDT 255
Query 248 ---------LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEI 288
L PF L+ D+F+ Y+ + R G + ARG+ V EI
Sbjct 256 EEAQKLAEELGITDVPFGLNPDEFVAYAQKQFATRLGVLQRARGKSVDEI 305
>gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
Length=317
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/290 (43%), Positives = 173/290 (60%), Gaps = 17/290 (5%)
Query 14 LNWASLPLKLF-AGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVT 72
LN LP++L+ W P DIDF++D+ DW+ +++ ER RLC+ F+AGEEAVT
Sbjct 18 LNHNILPMRLYHKAKKLGVWDPRDIDFSKDKEDWKAMNEAERRVILRLCSLFVAGEEAVT 77
Query 73 EDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV-GISEDLHRYLDDLPAY 131
D+ P + A+ EGRL +EMYLT F FEEAKHT+VFR +LD V G S DL + D Y
Sbjct 78 LDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDLSTFHKD--HY 135
Query 132 RQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGM 191
R+IFY LP+ + L DPSP AQ ASVTYN +VEG+LA TGYYA++ + LPG+
Sbjct 136 RKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGL 195
Query 192 QELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA---- 247
+ +R + DE RH+ +GT+ R ++ ++ W V R N L+P A+ ++++ A
Sbjct 196 IQAIRLLQRDESRHIGYGTYLLSRLISENEYIWDVVNRRTNLLLPHAIGVVQDLNAELDT 255
Query 248 ---------LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEI 288
L PF L+ D+F+ Y+ + R G + ARG+ V EI
Sbjct 256 EEAQKLAEELGITDVPFGLNPDEFVAYAQKQFATRLGVLQRARGKSVDEI 305
>gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length=317
Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/290 (43%), Positives = 174/290 (60%), Gaps = 17/290 (5%)
Query 14 LNWASLPLKLF-AGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVT 72
LN + LP++L+ W P DIDFT+D+ DW+ +++ ER RLC+ F+AGEEAVT
Sbjct 18 LNHSILPMRLYHKAKKLGTWDPRDIDFTKDKEDWQGMNEAERRVILRLCSLFVAGEEAVT 77
Query 73 EDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAV-GISEDLHRYLDDLPAY 131
D+ P + A+ EGRL +EMYLT F FEEAKHT+VFR +LD V G + DL + D Y
Sbjct 78 LDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDLSVFHKD--HY 135
Query 132 RQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGM 191
R+IFY LP+ + L DPSP AQ ASVTYN +VEG+LA TGYYA++ + LPG+
Sbjct 136 RKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGL 195
Query 192 QELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFA---- 247
+ +R + DE RH+ +GT+ R ++ + W V R+N L+P A+ ++++ A
Sbjct 196 IQAIRLLQRDESRHIGYGTYLLSRLISENAHIWDVVNRRINLLLPHAIGVVQDLNAELDT 255
Query 248 ---------LYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEI 288
L PF L+ D+F+ Y+ + R G + ARG+ V EI
Sbjct 256 EEAQKLAEELGITDVPFGLNPDEFVAYAQKQFATRLGVLQRARGKSVDEI 305
>gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
Length=296
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/279 (42%), Positives = 169/279 (61%), Gaps = 8/279 (2%)
Query 13 GLNWASLPLKLF-AGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAV 71
GLN LP++L+ W P ++DFT+DR DW+ L+ D+++ +LC+ F AGEEAV
Sbjct 11 GLNQEILPMRLYHKAKKLGIWDPKELDFTQDREDWKTLTTDQKELILKLCSLFQAGEEAV 70
Query 72 TEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVG-ISEDLHRYLDDLPA 130
T D+ P + + +EGRL +EMYLT F FEEAKHT+ FR++LD V DL Y +
Sbjct 71 TRDLLPLIRVVASEGRLEEEMYLTTFLFEEAKHTESFRLFLDEVAEYRGDLAIYHKE--N 128
Query 131 YRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPG 190
Y+++FY LP+ + L DPSP AQ ASVTYN IVEG+LA TGY+ + + +PG
Sbjct 129 YKKVFYEYLPQAMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSNALGRQGKMPG 188
Query 191 MQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFALYG 250
+ + V + DE RH+ +GT+ R +A ++ W +M EL+P A+ ++ E L G
Sbjct 189 LLKAVEYLKRDESRHIGYGTYLLSRLIAENENVWKTINNKMGELLPYAIGVVNE---LLG 245
Query 251 DQP-PFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEI 288
+ P PF L ++F+QY+T + R + A+ R V EI
Sbjct 246 EGPHPFGLDPEEFVQYATKQFQIRMDVLERAKDRSVDEI 284
>gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus M.14.25]
gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus M.16.27]
gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25]
gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27]
Length=308
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/276 (41%), Positives = 163/276 (60%), Gaps = 2/276 (0%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
S+ +GGLNW+ P+KL+ G FW PA+ID ++D DW+KL+D E+ + + ++F AG
Sbjct 15 SIKSGGLNWSLFPMKLYQLGKKLFWDPANIDLSKDAEDWKKLNDLEKMFIINVGSKFAAG 74
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAV D+ P + + EGR+ + MYL QF +EE+KH + FR + DAV + EDL Y D
Sbjct 75 EEAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNVMEDLSTYTKD 134
Query 128 L-PAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERA 186
L P Y++IFY ELP+ + LS DPSP QVRA VTYN IVEG+ A GY + +I R
Sbjct 135 LSPNYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRK 194
Query 187 ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAA-DDANWTVFETRMNELIPLALRLIEEG 245
ILPG+ ++V I DE RH+A+G + R V + + +N L P A+ + E
Sbjct 195 ILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIGIFSEP 254
Query 246 FALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNAR 281
+ PF+L+ + + Y+ R I+ A+
Sbjct 255 TMPQVESLPFNLTNIELVDYAKKLLNTRIDAINRAK 290
>gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4]
Length=308
Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/278 (42%), Positives = 165/278 (60%), Gaps = 6/278 (2%)
Query 8 SLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAG 67
S+ +GGLNW+ P+KL+ G FW PA+ID ++D DW+KL+D E+ + + ++F AG
Sbjct 15 SIRSGGLNWSLFPMKLYQLGKKLFWDPANIDLSKDAEDWKKLNDLEKMFIINVGSKFAAG 74
Query 68 EEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDD 127
EEAV D+ P + + EGR+ + MYL QF +EE+KH + FR + D V + EDL Y D
Sbjct 75 EEAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDIVNVMEDLSAYTKD 134
Query 128 L-PAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERA 186
L P Y++IFY ELP+ + LS DPSP QVRA VTYN IVEG+ A GY + +I R
Sbjct 135 LSPNYKKIFYEELPKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRK 194
Query 187 ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRM---NELIPLALRLIE 243
ILPG+ ++V I DE RH+A+G + R V + V++T M N L P A+ +
Sbjct 195 ILPGLAKMVNLIATDESRHIAFGIYLITRLV--KEYGEGVYKTAMDHINYLAPYAIGIFS 252
Query 244 EGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNAR 281
E + PF+L+ + + Y+ R I+ A+
Sbjct 253 EPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAINRAK 290
Lambda K H
0.322 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 543016982550
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40