BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0240

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607381|ref|NP_214754.1|  hypothetical protein Rv0240 [Mycoba...   295    2e-78
gi|31791418|ref|NP_853911.1|  hypothetical protein Mb0246 [Mycoba...   294    3e-78
gi|254233618|ref|ZP_04926944.1|  conserved hypothetical protein [...   280    6e-74
gi|196233591|ref|ZP_03132432.1|  PIN domain protein family protei...   147    4e-34
gi|196231348|ref|ZP_03130207.1|  conserved hypothetical protein [...   122    1e-26
gi|308273612|emb|CBX30214.1|  unknown protein [uncultured Desulfo...  52.8    2e-05
gi|147679127|ref|YP_001213342.1|  nucleic acid-binding protein [P...  48.1    4e-04
gi|258593476|emb|CBE69815.1|  conserved protein of unknown functi...  47.8    5e-04
gi|291571053|dbj|BAI93325.1|  hypothetical protein [Arthrospira p...  46.6    0.001
gi|258593410|emb|CBE69749.1|  conserved protein of unknown functi...  45.8    0.002
gi|291571198|dbj|BAI93470.1|  hypothetical protein [Arthrospira p...  45.8    0.002
gi|258593480|emb|CBE69819.1|  Conserved membrane protein [NC10 ba...  45.4    0.003
gi|15610833|ref|NP_218214.1|  hypothetical protein Rv3697c [Mycob...  42.4    0.022
gi|340628670|ref|YP_004747122.1|  hypothetical protein MCAN_37181...  41.6    0.036
gi|302542963|ref|ZP_07295305.1|  putative toxin-antitoxin system,...  41.6    0.040
gi|306805540|ref|ZP_07442208.1|  toxin [Mycobacterium tuberculosi...  41.6    0.042
gi|57642163|ref|YP_184641.1|  nucleic acid-binding protein [Therm...  40.8    0.066
gi|31794868|ref|NP_857361.1|  hypothetical protein Mb3723c [Mycob...  40.0    0.12 
gi|284055118|ref|ZP_06385328.1|  hypothetical protein AplaP_27045...  39.3    0.17 
gi|297623633|ref|YP_003705067.1|  PIN domain-containing protein [...  39.3    0.20 
gi|240104128|ref|YP_002960437.1|  Nucleotide binding protein, put...  38.9    0.28 
gi|262202854|ref|YP_003274062.1|  twitching mobility protein PilT...  38.1    0.38 
gi|240170675|ref|ZP_04749334.1|  PIN domain protein family protei...  37.7    0.61 
gi|341582789|ref|YP_004763281.1|  nucleic acid-binding protein [T...  37.0    0.99 
gi|288959012|ref|YP_003449353.1|  PIN domain-containing protein [...  36.6    1.3  
gi|116624725|ref|YP_826881.1|  PilT domain-containing protein [Ca...  36.6    1.3  
gi|189423148|ref|YP_001950325.1|  PilT protein domain-containing ...  36.2    1.5  
gi|333991903|ref|YP_004524517.1|  PIN domain-containing protein f...  35.8    2.4  
gi|284052655|ref|ZP_06382865.1|  hypothetical protein AplaP_14398...  35.4    2.5  
gi|229822546|ref|YP_002884072.1|  PIN domain-containing protein f...  35.4    2.5  
gi|116748338|ref|YP_845025.1|  PilT domain-containing protein [Sy...  35.4    3.2  
gi|83590841|ref|YP_430850.1|  PilT protein-like [Moorella thermoa...  35.0    3.3  
gi|14520334|ref|NP_125809.1|  hypothetical protein PAB2271 [Pyroc...  35.0    3.5  
gi|290959461|ref|YP_003490643.1|  hypothetical protein SCAB_50561...  34.3    6.1  
gi|209525514|ref|ZP_03274053.1|  PilT protein domain protein [Art...  34.3    6.4  
gi|163848473|ref|YP_001636517.1|  PilT domain-containing protein ...  34.3    6.5  
gi|88810689|ref|ZP_01125946.1|  hypothetical protein NB231_16453 ...  34.3    7.1  


>gi|15607381|ref|NP_214754.1| hypothetical protein Rv0240 [Mycobacterium tuberculosis H37Rv]
 gi|15839621|ref|NP_334658.1| hypothetical protein MT0254 [Mycobacterium tuberculosis CDC1551]
 gi|148660005|ref|YP_001281528.1| hypothetical protein MRA_0249 [Mycobacterium tuberculosis H37Ra]
 66 more sequence titles
 Length=145

 Score =  295 bits (754),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            +LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL
Sbjct  1    MLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL  60

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE  120
            EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE
Sbjct  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE  120

Query  121  FATRNINGFTDFGFSRVWDPITSDG  145
            FATRNINGFTDFGFSRVWDPITSDG
Sbjct  121  FATRNINGFTDFGFSRVWDPITSDG  145


>gi|31791418|ref|NP_853911.1| hypothetical protein Mb0246 [Mycobacterium bovis AF2122/97]
 gi|121636153|ref|YP_976376.1| hypothetical protein BCG_0278 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224988626|ref|YP_002643313.1| hypothetical protein JTY_0247 [Mycobacterium bovis BCG str. Tokyo 
172]
 10 more sequence titles
 Length=145

 Score =  294 bits (752),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 143/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            +LSIDTNILLYAQNRDCPEHDAAAAFLVEC+GRADVAVCELVLMELYQLLRNPTVVTRPL
Sbjct  1    MLSIDTNILLYAQNRDCPEHDAAAAFLVECSGRADVAVCELVLMELYQLLRNPTVVTRPL  60

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE  120
            EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE
Sbjct  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE  120

Query  121  FATRNINGFTDFGFSRVWDPITSDG  145
            FATRNINGFTDFGFSRVWDPITSDG
Sbjct  121  FATRNINGFTDFGFSRVWDPITSDG  145


>gi|254233618|ref|ZP_04926944.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124603411|gb|EAY61686.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=137

 Score =  280 bits (715),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)

Query  9    LLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGPEAAEV  68
            +LYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGPEAAEV
Sbjct  1    MLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGPEAAEV  60

Query  69   CQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFATRNING  128
            CQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFATRNING
Sbjct  61   CQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFATRNING  120

Query  129  FTDFGFSRVWDPITSDG  145
            FTDFGFSRVWDPITSDG
Sbjct  121  FTDFGFSRVWDPITSDG  137


>gi|196233591|ref|ZP_03132432.1| PIN domain protein family protein [Chthoniobacter flavus Ellin428]
 gi|196222261|gb|EDY16790.1| PIN domain protein family protein [Chthoniobacter flavus Ellin428]
Length=149

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 72/147 (49%), Positives = 95/147 (65%), Gaps = 4/147 (2%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            +LSID N+LLY+ +   PEH+AA  F+   + R DVA+ E +  E Y LLRNP V+ +PL
Sbjct  1    MLSIDANLLLYSFSTAAPEHEAARRFIESISSREDVALSEFIFTEFYLLLRNPVVLAQPL  60

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNE----VWVLAATPRIARRRLFDARLALTLRHH  116
              PEAAEV Q +R++ RW +    P   E    +W  AA P  ARRR++DAR AL+LR  
Sbjct  61   TAPEAAEVIQHYRQHPRWKITGFPPTSRELHADLWHRAAAPTFARRRIYDARTALSLRAF  120

Query  117  GVDEFATRNINGFTDFGFSRVWDPITS  143
            G+ EFAT N   F DFGFSR+W+P+ S
Sbjct  121  GITEFATANEKDFQDFGFSRIWNPLIS  147


>gi|196231348|ref|ZP_03130207.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
 gi|196224684|gb|EDY19195.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
Length=145

 Score =  122 bits (307),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 66/146 (46%), Positives = 88/146 (61%), Gaps = 6/146 (4%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            ++S+DTNILL A     P H AA AF+    GR DV + E +L+ELY LLRNP V+ RPL
Sbjct  1    MISLDTNILLPAVESSNPHHTAATAFVQSLQGRDDVVISEFILLELYVLLRNPAVLARPL  60

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRI-----ARRRLFDARLALTLRH  115
                AA VC+ FR++  W +L   P  +  +  A  PR+     ARRR +D R AL+L  
Sbjct  61   SASAAATVCEAFRQHPHWQIL-GFPSDSRAFHDAFWPRLRDDPFARRRAYDWRSALSLLQ  119

Query  116  HGVDEFATRNINGFTDFGFSRVWDPI  141
             GV EFAT N+  F   GF++VW+P+
Sbjct  120  QGVTEFATVNVKDFEGLGFAKVWNPL  145


>gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfobacterium sp.]
Length=150

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (47%), Gaps = 8/150 (5%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAF----LVECAGRADVAVC--ELVLMELYQLLRNPT  54
            + +IDTN+++YA N   P H  A  F    + E      +AVC    VLME   ++    
Sbjct  1    MFAIDTNLIVYAHNIASPFHKRAKQFVERVMNERNAEGQLAVCLPAQVLMEFVHVITWQH  60

Query  55   VVTRPLEGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR  114
            +   PL   EA ++ Q +  +    + +    +     L+ +    R+++FD  LA TL+
Sbjct  61   L-EAPLSLQEAIQIVQDYLDSGVKIIFQQDSRIQTFISLSGSVT-TRKKVFDLALASTLK  118

Query  115  HHGVDEFATRNINGFTDFGFSRVWDPITSD  144
             +      T N++ F  F F +V +P++ +
Sbjct  119  DNHTIGLYTNNVDDFKGFDFLKVINPLSDE  148


>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum 
SI]
 gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum 
SI]
Length=145

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 38/131 (30%), Positives = 61/131 (47%), Gaps = 8/131 (6%)

Query  5    DTNILLYAQNRDCPEHDAAAAFLVECAGR-ADVAVCELVLMELYQLLRNPTVVTRPLEGP  63
            DTN+L+YA N D P+H A+  F+     +  D  +   VL+E Y ++ +   VTRPLE  
Sbjct  5    DTNVLVYAINTDAPQHTASRKFVEAVQQKNIDSVLPVQVLLEFYAIVTDHRRVTRPLEPE  64

Query  64   EAAEVCQTFRRNRRW--ALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEF  121
             A +     R         L++  ++ E+ +     +     +FDA L   ++  GV   
Sbjct  65   TAWKQVNALRAIFPVIDGGLKSFDLLKEISL-----KTKGADIFDAYLVAQMKACGVSLL  119

Query  122  ATRNINGFTDF  132
             T NI  F+ F
Sbjct  120  CTYNIKDFSRF  130


>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=144

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 40/142 (29%), Positives = 63/142 (45%), Gaps = 8/142 (5%)

Query  5    DTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCEL-VLMELYQLLRNPTVVTRPLEGP  63
            DTN+L+YA + D P H    A L +  G+         +L E  ++  +P V  +P    
Sbjct  5    DTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQPWPAA  64

Query  64   EAAEVCQTFRRNRRWALL----ENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVD  119
             A E  +    +   +LL     +A V+ E  V    P +A   + DA  A+ +R HG+ 
Sbjct  65   RAWEFIEAVLASPGLSLLLPTDRHATVVAE--VFGELPHLAGNVIHDAHTAILMREHGIR  122

Query  120  EFATRNINGFTDFGFSRVWDPI  141
               TR+ + F  F F    DP+
Sbjct  123  RIYTRDTD-FHRFPFLEPIDPM  143


>gi|291571053|dbj|BAI93325.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=149

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 37/130 (29%), Positives = 54/130 (42%), Gaps = 2/130 (1%)

Query  2    LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE  61
            + +DTNIL Y  N   P+H AA   +     R  + V   VL E Y  + NP ++  PL+
Sbjct  8    IYLDTNILAYVANTKAPQHKAALE-IFRPTEREILCVSSQVLAEFYSYITNPAILATPLQ  66

Query  62   GPEAAEVCQTFRRNRRWALLENAPVMNEVWV-LAATPRIARRRLFDARLALTLRHHGVDE  120
              EA        +     LL     + E W+ L A   ++   +FD      +  H V  
Sbjct  67   PTEAIIRINRICQMPHICLLSTPVDLFERWIGLLAERPVSNGGVFDLLHIGIMLAHDVTT  126

Query  121  FATRNINGFT  130
              T NI  F+
Sbjct  127  IYTFNIKDFS  136


>gi|258593410|emb|CBE69749.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=144

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 40/139 (29%), Positives = 62/139 (45%), Gaps = 10/139 (7%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFLVECA-GRADVAVCELVLMELYQLLRNPTVVTRP  59
            ++++DTN+L+YA   D P H AA A + E A  RA  A+    L E   ++ +PT+    
Sbjct  1    MIAVDTNLLVYAHREDSPWHTAAYARIAELAESRAPWAIPWPCLHEFLAIVTHPTIYAPA  60

Query  60   LEGPEAAEVCQTFRRNRRWALLENAPVMNEVWV----LAATPRIARRRLFDARLALTLRH  115
                 A +    +  +    LL     M+  W+         +IA  ++ DA +A   R 
Sbjct  61   TPLAIALDQVDAWLESPSLTLLTE---MSGYWIQLRHAIQKGQIAGPQVHDAHIAALCRL  117

Query  116  HGVDEFAT--RNINGFTDF  132
            HGV E  T  R+   F D 
Sbjct  118  HGVRELWTADRHFGRFPDL  136


>gi|291571198|dbj|BAI93470.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=149

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 36/130 (28%), Positives = 53/130 (41%), Gaps = 2/130 (1%)

Query  2    LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE  61
            + +D NIL Y  N   P+H AA   +     R  + V   VL E Y  + NP ++  PL+
Sbjct  8    IYLDMNILAYVANTKAPQHQAALE-IFRPTEREILCVSSQVLAEFYSYITNPAILATPLQ  66

Query  62   GPEAAEVCQTFRRNRRWALLENAPVMNEVWV-LAATPRIARRRLFDARLALTLRHHGVDE  120
              EA        +     LL     + E W+ L A   +    +FD      +  H V+ 
Sbjct  67   PTEAIIRINRICQMPHICLLSTPVELFEGWIGLLAERPVTNGGVFDLLHIWIVLAHEVNS  126

Query  121  FATRNINGFT  130
              T NI  F+
Sbjct  127  IYTFNIKDFS  136


>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 40/141 (29%), Positives = 59/141 (42%), Gaps = 3/141 (2%)

Query  3    SIDTNILLYAQNRDCPEHDAAAAFLVECAGRADV-AVCELVLMELYQLLRNPTVVTRPLE  61
            S+D N+LLYA +   P+H  A  F+ E A   D+  +    L+   ++   P +  RPL 
Sbjct  4    SVDVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPLS  63

Query  62   GPEA-AEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE  120
              +A   V       R   L E    ++    + A   +    + DA LA  L+ HGV  
Sbjct  64   PSDALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVGR  123

Query  121  FATRNINGFTDFGFSRVWDPI  141
              T +   F  F F  V DP 
Sbjct  124  LYTAD-RDFRKFDFLEVVDPF  143


>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
 gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
 gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
 62 more sequence titles
 Length=145

 Score = 42.4 bits (98),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 40/144 (28%), Positives = 64/144 (45%), Gaps = 5/144 (3%)

Query  3    SIDTNILLYAQNRDCPEHDAAAAFLVE--CAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            + D ++L++A +R  P HD A   LVE   AG   V +   V +   +++ +PT++  PL
Sbjct  4    TFDVDVLVHATHRASPFHDKAKT-LVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL  62

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVD  119
                A E  + F        +  A     V+   A P   R  L  DA L   +RHHG+ 
Sbjct  63   APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA  122

Query  120  EFATRNINGFTDFGFSRVWDPITS  143
               + + + F  F   R+ DP + 
Sbjct  123  TIWSHDRD-FRKFEGIRIRDPFSG  145


>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT 
140010059]
 gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT 
140010059]
Length=145

 Score = 41.6 bits (96),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 40/144 (28%), Positives = 63/144 (44%), Gaps = 5/144 (3%)

Query  3    SIDTNILLYAQNRDCPEHDAAAAFLVE--CAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            + D ++L++A +R  P HD A   LVE   AG   V +   V +   +++ +PT++  PL
Sbjct  4    TFDVDVLVHATHRASPFHDKAKT-LVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL  62

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVD  119
                A E  + F        +  A     V+   A P   R  L  DA L   +RHHG+ 
Sbjct  63   APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA  122

Query  120  EFATRNINGFTDFGFSRVWDPITS  143
               + + + F  F   R+ DP   
Sbjct  123  TIWSHDRD-FRKFEGIRIRDPFAG  145


>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces hygroscopicus ATCC 53653]
 gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces himastatinicus ATCC 53653]
Length=144

 Score = 41.6 bits (96),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 37/136 (28%), Positives = 61/136 (45%), Gaps = 10/136 (7%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFLVECA-GRADVAVCELVLMELYQLLRNPTVVTRP  59
            ++++DTNIL+YA   D P H AAAA +   A  RA  A+    L E + +  +P +   P
Sbjct  1    MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP  60

Query  60   LEGPEAAEVCQTFRRNRRWALLENA----PVMNEVWVLAATPRIARRRLFDARLALTLRH  115
                +A      +  +    LL  A    P + +   +    ++A   + D R+A    +
Sbjct  61   STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQ---MLEDGKVAGPMVHDGRIAALCAN  117

Query  116  HGVDEF--ATRNINGF  129
             GV E   A R+ + F
Sbjct  118  SGVRELWSADRDFSRF  133


>gi|306805540|ref|ZP_07442208.1| toxin [Mycobacterium tuberculosis SUMu007]
 gi|306969936|ref|ZP_07482597.1| toxin [Mycobacterium tuberculosis SUMu009]
 gi|308347839|gb|EFP36690.1| toxin [Mycobacterium tuberculosis SUMu007]
 gi|308352492|gb|EFP41343.1| toxin [Mycobacterium tuberculosis SUMu009]
Length=145

 Score = 41.6 bits (96),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 40/144 (28%), Positives = 63/144 (44%), Gaps = 5/144 (3%)

Query  3    SIDTNILLYAQNRDCPEHDAAAAFLVE--CAGRADVAVCELVLMELYQLLRNPTVVTRPL  60
            + D ++L++A +R  P HD A   LVE   AG   V +   V +    ++ +PT++  PL
Sbjct  4    TFDVDVLVHATHRASPFHDKAKT-LVERFLAGPGLVYLLWPVALGYLWVVTHPTLLGAPL  62

Query  61   EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVD  119
                A E  + F        +  A     V+   A P   R  L  DA L   +RHHG+ 
Sbjct  63   APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA  122

Query  120  EFATRNINGFTDFGFSRVWDPITS  143
               + + + F  F   R+ DP + 
Sbjct  123  TIWSHDRD-FRKFEGIRIRDPFSG  145


>gi|57642163|ref|YP_184641.1| nucleic acid-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160487|dbj|BAD86417.1| predicted nucleic acid-binding protein, containing PIN domain 
[Thermococcus kodakarensis KOD1]
Length=128

 Score = 40.8 bits (94),  Expect = 0.066, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 50/115 (44%), Gaps = 12/115 (10%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV  55
            IDTN+ +YA  RD  E +A A  L+  AG     V  +VL ELY   R           V
Sbjct  4    IDTNVFIYATLRDS-EFNAEARKLL--AGLERWIVPSIVLYELYWFFREEGYKSEEINNV  60

Query  56   VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARL  109
            ++  L  P    +C T +  +R   L  N    N++ +LA      R   +D RL
Sbjct  61   ISSILNSPRTRVICDTGKYTKRALELTRNPKRFNDMVILATAEDFKRLATYDKRL  115


>gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycobacterium bovis AF2122/97]
 gi|121639611|ref|YP_979835.1| hypothetical protein BCG_3756c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992107|ref|YP_002646796.1| hypothetical protein JTY_3757 [Mycobacterium bovis BCG str. Tokyo 
172]
 10 more sequence titles
 Length=145

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 36/143 (26%), Positives = 61/143 (43%), Gaps = 3/143 (2%)

Query  3    SIDTNILLYAQNRDCPEHDAAAAFLVECAGRAD-VAVCELVLMELYQLLRNPTVVTRPLE  61
            + D ++L++A +R  P HD A   +     R   V +   V +   +++ +PT++  PL 
Sbjct  4    TFDVDVLVHATHRASPFHDKAKTLVERFLARPGLVYLLWPVALGYLRVVTHPTLLGAPLA  63

Query  62   GPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVDE  120
               A E  + F        +  A     V+   A P   R  L  DA L   +RHHG+  
Sbjct  64   PEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIAT  123

Query  121  FATRNINGFTDFGFSRVWDPITS  143
              + + + F  F   R+ DP + 
Sbjct  124  IWSHDRD-FRKFEGIRIRDPFSG  145


>gi|284055118|ref|ZP_06385328.1| hypothetical protein AplaP_27045 [Arthrospira platensis str. 
Paraca]
Length=90

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 34/73 (47%), Gaps = 5/73 (6%)

Query  2   LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE  61
           + +D NIL Y  N   P+H AA   +     R  + V   VL E Y  + NP ++  PL+
Sbjct  15  IYLDMNILAYVANTKAPQHKAALE-IFRPTEREILCVSSQVLAEFYSYITNPAILATPLQ  73

Query  62  GPEAA----EVCQ  70
             EA      +CQ
Sbjct  74  PTEAIIRINRICQ  86


>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=145

 Score = 39.3 bits (90),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 43/152 (29%), Positives = 63/152 (42%), Gaps = 32/152 (21%)

Query  1    VLSIDTNILLYAQNRDCPEHDAAAAFL-VECAGRADVAVCELVLMELYQLLRNPTVVTRP  59
            ++ ID N+L+YA     P+H AA A+L  + +    V +    L+   +L  NP V  RP
Sbjct  1    MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP  60

Query  60   LEGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAAT---PRIAR----------RRLFD  106
            L   EA            WA +E    +  VW+   T   P++ R            + D
Sbjct  61   LTAAEA------------WAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPD  108

Query  107  ARLALTLRHHGVDEFATRNINGFTDFG-FSRV  137
            A LA     HG+   +T       DFG F R+
Sbjct  109  AHLAALALEHGLTLCSTDG-----DFGRFPRL  135


>gi|240104128|ref|YP_002960437.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus 
gammatolerans EJ3]
 gi|239911682|gb|ACS34573.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus 
gammatolerans EJ3]
Length=128

 Score = 38.9 bits (89),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 34/125 (28%), Positives = 51/125 (41%), Gaps = 12/125 (9%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV  55
            IDTN+ +YA  RD   ++ A   L   A      V  +VL ELY   R           V
Sbjct  4    IDTNVFVYAVLRDSEFNEEARKLL---ASLERWVVPSIVLYELYWFFRGEGYRVEEINAV  60

Query  56   VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR  114
            ++  LE P    V  + +  +R   L +N    N++ +LA      R   +D +L     
Sbjct  61   ISSILESPRTKVVGDSGKYTKRALELAKNPKRFNDMVILATAQEFGRLVTYDKKLRRDAE  120

Query  115  HHGVD  119
              G+D
Sbjct  121  RLGID  125


>gi|262202854|ref|YP_003274062.1| twitching mobility protein PilT [Gordonia bronchialis DSM 43247]
 gi|262086201|gb|ACY22169.1| PilT protein domain protein [Gordonia bronchialis DSM 43247]
Length=147

 Score = 38.1 bits (87),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 39/141 (28%), Positives = 62/141 (44%), Gaps = 8/141 (5%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCEL-VLMELYQLLRNPTVVTRPLEG  62
            +DTN+LLYA +         A  LV   GR+   V  + VL E Y  +     V  PL+ 
Sbjct  6    VDTNVLLYAYDDGGDHRHDRALELVADLGRSRAGVLSVQVLQEFYVNVTRKVRV--PLDP  63

Query  63   PEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFA  122
            P A E+ +T     RW    ++P+ ++V   A     A+   +DA +  + +  G D   
Sbjct  64   PTAREILRTL---SRWP--AHSPLASDVIAAAEIAESAQLSFWDAMVIRSAQRMGCDTLW  118

Query  123  TRNINGFTDFGFSRVWDPITS  143
            + ++N        RV +P  S
Sbjct  119  SEDLNDGQVIAGVRVRNPFAS  139


>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC 
12478]
Length=142

 Score = 37.7 bits (86),  Expect = 0.61, Method: Compositional matrix adjust.
 Identities = 44/154 (29%), Positives = 68/154 (45%), Gaps = 28/154 (18%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPLEG  62
            +D N+LLYA +     + AAA++L E  AG + V +    +    ++  +P V   PL G
Sbjct  3    VDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPLSG  62

Query  63   PEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIAR-------------RRLFDARL  109
            P A      +R    W  +   PV   VW+  AT   AR               + DA+L
Sbjct  63   PAA------WRYVAEWLAV---PV---VWIPPATETTARVYARLSEQVEITGNLVPDAQL  110

Query  110  ALTLRHHGVDEFATRNINGFTDFGFSRVWDPITS  143
            A     HGV E A+ + + F  F   R  +P+++
Sbjct  111  AALAVEHGV-ELASADTD-FMRFPGLRWMNPLSA  142


>gi|341582789|ref|YP_004763281.1| nucleic acid-binding protein [Thermococcus sp. 4557]
 gi|340810447|gb|AEK73604.1| nucleic acid-binding protein [Thermococcus sp. 4557]
Length=128

 Score = 37.0 bits (84),  Expect = 0.99, Method: Compositional matrix adjust.
 Identities = 33/124 (27%), Positives = 47/124 (38%), Gaps = 12/124 (9%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV  55
            IDTN+ +YA  RD   +  A   L   AG     V  +VL ELY   R           V
Sbjct  4    IDTNVFIYAVLRDSEFNGEARKLL---AGLERWTVPSIVLYELYWFFREEGYSGEEIGKV  60

Query  56   VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR  114
            ++  L       +C   +  +R   L  N    N++ +LA      R   +D RL     
Sbjct  61   ISSILNSQRTKVICDGGKYTKRALELTRNPKRFNDMVILATAEDFKRLATYDKRLKKEAE  120

Query  115  HHGV  118
              G+
Sbjct  121  KLGI  124


>gi|288959012|ref|YP_003449353.1| PIN domain-containing protein [Azospirillum sp. B510]
 gi|288911320|dbj|BAI72809.1| PIN domain protein [Azospirillum sp. B510]
Length=155

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 41/147 (28%), Positives = 62/147 (43%), Gaps = 12/147 (8%)

Query  2    LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRAD--VAVCELVLMELYQLLRNPTVVTRP  59
            +S DTNIL YA ++  P+  A A  L+E A  A   V +   VL ELY  L       R 
Sbjct  6    VSFDTNILFYAADQRDPDKYAVALDLLERAATAGSPVLIAGQVLCELYASLAR----KRI  61

Query  60   LEGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARR-RLFDARLALTLRHHGV  118
            L   EA ++ + + +       E  PV ++ +  A     A   +++DA L      +G 
Sbjct  62   LPPAEALDLVRDYEQT-----FERLPVASDAFRRAFEAVAAHGLQIWDAVLWANADAYGC  116

Query  119  DEFATRNINGFTDFGFSRVWDPITSDG  145
                + +  G    G     +P T DG
Sbjct  117  KYLVSEDFQGGRRLGGVTFLNPFTVDG  143


>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 20/70 (29%), Positives = 37/70 (53%), Gaps = 1/70 (1%)

Query  4   IDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPLEG  62
           +D NILLYA N+D P H +A  +L +  +G   +     V++   +L   P +  +PL  
Sbjct  4   LDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKPLSP  63

Query  63  PEAAEVCQTF  72
            +A ++  ++
Sbjct  64  DQAFDLVASW  73


>gi|189423148|ref|YP_001950325.1| PilT protein domain-containing protein [Geobacter lovleyi SZ]
 gi|189419407|gb|ACD93805.1| PilT protein domain protein [Geobacter lovleyi SZ]
Length=138

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 38/74 (52%), Gaps = 7/74 (9%)

Query  2   LSIDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPL  60
           L +DT+++L    R  P +DAAA    E  AG   + V  L    L+ LLR      +  
Sbjct  5   LFVDTDVVLDLLARREPFYDAAARLFSEAEAGNLTLCVSSLTFANLFYLLR------KQH  58

Query  61  EGPEAAEVCQTFRR  74
            GP+A +V +TF++
Sbjct  59  SGPQAQQVLRTFKQ  72


>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp. 
JDM601]
 gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 41/154 (27%), Positives = 66/154 (43%), Gaps = 28/154 (18%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVECA-GRADVAVCELVLMELYQLLRNPTVVTRPLEG  62
            +D N+LLYA + D   +  AAA+L E   G   + +    +    +++ +P V   PL  
Sbjct  3    LDANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPLPP  62

Query  63   PEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIAR-------------RRLFDARL  109
             EA            W+ + +   +  VW+  AT   AR               + DA+L
Sbjct  63   SEA------------WSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQL  110

Query  110  ALTLRHHGVDEFATRNINGFTDFGFSRVWDPITS  143
            A     HGV E A+ + + F  F   R ++P+TS
Sbjct  111  AALAIEHGV-ELASAD-SDFQRFPGLRWFNPLTS  142


>gi|284052655|ref|ZP_06382865.1| hypothetical protein AplaP_14398 [Arthrospira platensis str. 
Paraca]
 gi|291567104|dbj|BAI89376.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=147

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 40/145 (28%), Positives = 59/145 (41%), Gaps = 13/145 (8%)

Query  4    IDTNILLYAQNRDCPEH-DAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE-  61
            IDTNILL + + +   H DA  A  +  A   DV +    L+E +       V TRP++ 
Sbjct  5    IDTNILLRSADANHSMHADAVTATNILLAQGGDVCIIPQNLIEFWN------VYTRPVDK  58

Query  62   ---GPEAAEVCQTFRRNRRWALL--ENAPVMNEVWVLAATPRIARRRLFDARLALTLRHH  116
               G    E      R +   LL  +   + +E   L  T  +    + DARL   +  H
Sbjct  59   NGLGHTPREAAAEVNRLKGLFLLLPDRLAIYSEWERLVLTYGVRGVNVHDARLVAAMLVH  118

Query  117  GVDEFATRNINGFTDFGFSRVWDPI  141
            G+    T NI  F  +G      P+
Sbjct  119  GLTHILTFNIRDFARYGEVTAMHPM  143


>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae 
DSM 12333]
 gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM 
12333]
Length=143

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 23/77 (30%), Positives = 37/77 (49%), Gaps = 2/77 (2%)

Query  4   IDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPL-E  61
           +D N+LLYA +   P H AA  +L E  +G A V +    L+   ++  +P    +PL  
Sbjct  3   VDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPLTP  62

Query  62  GPEAAEVCQTFRRNRRW  78
           G   A + +  R +  W
Sbjct  63  GAAWAFITEWLRADPAW  79


>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans 
MPOB]
 gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 18/59 (31%), Positives = 31/59 (53%), Gaps = 1/59 (1%)

Query  4   IDTNILLYAQNRDCPEHDAAAAFL-VECAGRADVAVCELVLMELYQLLRNPTVVTRPLE  61
           +D N+LLYA N+D P+H  +  +L    +G   V +  +V+    ++  N  +  RPL 
Sbjct  4   VDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERPLS  62


>gi|83590841|ref|YP_430850.1| PilT protein-like [Moorella thermoacetica ATCC 39073]
 gi|83573755|gb|ABC20307.1| PilT protein-like protein [Moorella thermoacetica ATCC 39073]
Length=149

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 39/147 (27%), Positives = 70/147 (48%), Gaps = 17/147 (11%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVE-CAGRADVAVCELVLMELYQLLRNPTVVTRPLEG  62
            +DTN+++YA +R  PE    A  ++E  A R   A+   VL E +        VTR ++ 
Sbjct  7    VDTNVMVYAYDRSEPEKQEKALQVLEFLAKRRIGAISAQVLAEFF------VTVTRKIQQ  60

Query  63   PEAAEVCQTFRRNR--RWALLENAPVMNEVWVLAATPRIARRRL--FDARLALTLRHHGV  118
            P  AE+     +N    W +L+    +  + ++ A+  +   +L  +DA++  T R + +
Sbjct  61   PLTAELAYQRVQNYLASWTVLD----LTGLIIIEASRGVREYQLSYWDAQIWATARLNQI  116

Query  119  DEFATRNIN-GFTDFGFSRVWDPITSD  144
            +   + + N G T  G S V +P   D
Sbjct  117  NIVLSEDFNPGSTLEGVSFV-NPFDGD  142


>gi|14520334|ref|NP_125809.1| hypothetical protein PAB2271 [Pyrococcus abyssi GE5]
 gi|5457549|emb|CAB49040.1| Hypothetical protein PAB2271 [Pyrococcus abyssi GE5]
Length=128

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 34/125 (28%), Positives = 52/125 (42%), Gaps = 12/125 (9%)

Query  4    IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV  55
            IDTN+ +YA  RD  E ++ A  L+    R    V  +VL ELY   R           V
Sbjct  4    IDTNVFIYAILRDS-EFNSRARNLLASLERW--IVPSIVLYELYWFFREEGYGRDEITNV  60

Query  56   VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR  114
            ++  L  P    +    R  +R   L +N    N++ +LA   +  R   +D RL     
Sbjct  61   ISSILNSPRTRVIGDNGRYTKRALELTKNPRRFNDMIILATAEQFKRLATYDKRLKKEAE  120

Query  115  HHGVD  119
              G++
Sbjct  121  RLGIE  125


>gi|290959461|ref|YP_003490643.1| hypothetical protein SCAB_50561 [Streptomyces scabiei 87.22]
 gi|260648987|emb|CBG72101.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=192

 Score = 34.3 bits (77),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 22/59 (38%), Positives = 31/59 (53%), Gaps = 5/59 (8%)

Query  88   NEVWVLAATPRIARRRLFDARLALTLRHHGV-DEFATRNINGFTDFGFSRVW-DPITSD  144
             +VW L  TPR  RR   +A L LT +  G     A R +  FTD+  +R+W +P+  D
Sbjct  130  GQVWQLCGTPRRDRR---EAELFLTAQRRGPRPAIAYRLVQEFTDYDVTRIWGEPVRMD  185


>gi|209525514|ref|ZP_03274053.1| PilT protein domain protein [Arthrospira maxima CS-328]
 gi|209494013|gb|EDZ94329.1| PilT protein domain protein [Arthrospira maxima CS-328]
Length=147

 Score = 34.3 bits (77),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 38/137 (28%), Positives = 57/137 (42%), Gaps = 13/137 (9%)

Query  4    IDTNILLYAQNRDCPEH-DAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE-  61
            IDTNILL + + +   + DA  A  +  A   DV +    L+E +       V TRP++ 
Sbjct  5    IDTNILLRSADANHSMYADAVTATNILLAQGGDVCIIPQNLIEFWN------VYTRPVDK  58

Query  62   ---GPEAAEVCQTFRRNRRWALL--ENAPVMNEVWVLAATPRIARRRLFDARLALTLRHH  116
               G    E      R +   LL  +   + +E   L  T  +    + DARL   +  H
Sbjct  59   NGLGHTPTEAAAEVNRLKGLFLLLPDRLAIYSEWERLVLTYGVRGVNVHDARLVAAMLIH  118

Query  117  GVDEFATRNINGFTDFG  133
            G+    T NI  F  +G
Sbjct  119  GLTHILTFNIRDFARYG  135


>gi|163848473|ref|YP_001636517.1| PilT domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526402|ref|YP_002570873.1| PilT protein domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163669762|gb|ABY36128.1| PilT protein domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450281|gb|ACM54547.1| PilT protein domain protein [Chloroflexus sp. Y-400-fl]
Length=155

 Score = 34.3 bits (77),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 34/132 (26%), Positives = 55/132 (42%), Gaps = 9/132 (6%)

Query  4    IDTNILLYAQNRDCPEHDAA-AAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEG  62
            +DTNIL+YA     P +D A AA     A    + +   VL E    L  P +      G
Sbjct  11   LDTNILVYASVDTSPFYDLARAAITAFEAHHTPLWISRQVLREYLATLARPHI------G  64

Query  63   PEAAEVCQTFRR-NRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEF  121
                E+    R+   R+ + E +P++    +L    R   R++ D  +  T++  G+   
Sbjct  65   IPITELTAAVRQFAVRFHIAEESPLVT-AQLLTLLERGYSRQIHDTNIVATMQAFGIKRI  123

Query  122  ATRNINGFTDFG  133
             T N + F  F 
Sbjct  124  LTNNPDDFAPFA  135


>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
 gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144

 Score = 34.3 bits (77),  Expect = 7.1, Method: Compositional matrix adjust.
 Identities = 22/82 (27%), Positives = 37/82 (46%), Gaps = 1/82 (1%)

Query  5   DTNILLYAQNRDCPEH-DAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGP  63
           D N+L+YA N D P H DA A +    +    V +     +   +L+ +  V+  P+E  
Sbjct  5   DVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLPWASALGFIRLMTHRAVLVMPVEPS  64

Query  64  EAAEVCQTFRRNRRWALLENAP  85
            A E  +++      + LE  P
Sbjct  65  RAVEYVRSWHSRSNVSALEPGP  86



Lambda     K      H
   0.326    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128154014136




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40