BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0240
Length=145
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607381|ref|NP_214754.1| hypothetical protein Rv0240 [Mycoba... 295 2e-78
gi|31791418|ref|NP_853911.1| hypothetical protein Mb0246 [Mycoba... 294 3e-78
gi|254233618|ref|ZP_04926944.1| conserved hypothetical protein [... 280 6e-74
gi|196233591|ref|ZP_03132432.1| PIN domain protein family protei... 147 4e-34
gi|196231348|ref|ZP_03130207.1| conserved hypothetical protein [... 122 1e-26
gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfo... 52.8 2e-05
gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [P... 48.1 4e-04
gi|258593476|emb|CBE69815.1| conserved protein of unknown functi... 47.8 5e-04
gi|291571053|dbj|BAI93325.1| hypothetical protein [Arthrospira p... 46.6 0.001
gi|258593410|emb|CBE69749.1| conserved protein of unknown functi... 45.8 0.002
gi|291571198|dbj|BAI93470.1| hypothetical protein [Arthrospira p... 45.8 0.002
gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 ba... 45.4 0.003
gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycob... 42.4 0.022
gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181... 41.6 0.036
gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system,... 41.6 0.040
gi|306805540|ref|ZP_07442208.1| toxin [Mycobacterium tuberculosi... 41.6 0.042
gi|57642163|ref|YP_184641.1| nucleic acid-binding protein [Therm... 40.8 0.066
gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycob... 40.0 0.12
gi|284055118|ref|ZP_06385328.1| hypothetical protein AplaP_27045... 39.3 0.17
gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [... 39.3 0.20
gi|240104128|ref|YP_002960437.1| Nucleotide binding protein, put... 38.9 0.28
gi|262202854|ref|YP_003274062.1| twitching mobility protein PilT... 38.1 0.38
gi|240170675|ref|ZP_04749334.1| PIN domain protein family protei... 37.7 0.61
gi|341582789|ref|YP_004763281.1| nucleic acid-binding protein [T... 37.0 0.99
gi|288959012|ref|YP_003449353.1| PIN domain-containing protein [... 36.6 1.3
gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Ca... 36.6 1.3
gi|189423148|ref|YP_001950325.1| PilT protein domain-containing ... 36.2 1.5
gi|333991903|ref|YP_004524517.1| PIN domain-containing protein f... 35.8 2.4
gi|284052655|ref|ZP_06382865.1| hypothetical protein AplaP_14398... 35.4 2.5
gi|229822546|ref|YP_002884072.1| PIN domain-containing protein f... 35.4 2.5
gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Sy... 35.4 3.2
gi|83590841|ref|YP_430850.1| PilT protein-like [Moorella thermoa... 35.0 3.3
gi|14520334|ref|NP_125809.1| hypothetical protein PAB2271 [Pyroc... 35.0 3.5
gi|290959461|ref|YP_003490643.1| hypothetical protein SCAB_50561... 34.3 6.1
gi|209525514|ref|ZP_03274053.1| PilT protein domain protein [Art... 34.3 6.4
gi|163848473|ref|YP_001636517.1| PilT domain-containing protein ... 34.3 6.5
gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 ... 34.3 7.1
>gi|15607381|ref|NP_214754.1| hypothetical protein Rv0240 [Mycobacterium tuberculosis H37Rv]
gi|15839621|ref|NP_334658.1| hypothetical protein MT0254 [Mycobacterium tuberculosis CDC1551]
gi|148660005|ref|YP_001281528.1| hypothetical protein MRA_0249 [Mycobacterium tuberculosis H37Ra]
66 more sequence titles
Length=145
Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
+LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL
Sbjct 1 MLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE 120
EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE
Sbjct 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE 120
Query 121 FATRNINGFTDFGFSRVWDPITSDG 145
FATRNINGFTDFGFSRVWDPITSDG
Sbjct 121 FATRNINGFTDFGFSRVWDPITSDG 145
>gi|31791418|ref|NP_853911.1| hypothetical protein Mb0246 [Mycobacterium bovis AF2122/97]
gi|121636153|ref|YP_976376.1| hypothetical protein BCG_0278 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224988626|ref|YP_002643313.1| hypothetical protein JTY_0247 [Mycobacterium bovis BCG str. Tokyo
172]
10 more sequence titles
Length=145
Score = 294 bits (752), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
+LSIDTNILLYAQNRDCPEHDAAAAFLVEC+GRADVAVCELVLMELYQLLRNPTVVTRPL
Sbjct 1 MLSIDTNILLYAQNRDCPEHDAAAAFLVECSGRADVAVCELVLMELYQLLRNPTVVTRPL 60
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE 120
EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE
Sbjct 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE 120
Query 121 FATRNINGFTDFGFSRVWDPITSDG 145
FATRNINGFTDFGFSRVWDPITSDG
Sbjct 121 FATRNINGFTDFGFSRVWDPITSDG 145
>gi|254233618|ref|ZP_04926944.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124603411|gb|EAY61686.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=137
Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 9 LLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGPEAAEV 68
+LYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGPEAAEV
Sbjct 1 MLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGPEAAEV 60
Query 69 CQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFATRNING 128
CQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFATRNING
Sbjct 61 CQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFATRNING 120
Query 129 FTDFGFSRVWDPITSDG 145
FTDFGFSRVWDPITSDG
Sbjct 121 FTDFGFSRVWDPITSDG 137
>gi|196233591|ref|ZP_03132432.1| PIN domain protein family protein [Chthoniobacter flavus Ellin428]
gi|196222261|gb|EDY16790.1| PIN domain protein family protein [Chthoniobacter flavus Ellin428]
Length=149
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/147 (49%), Positives = 95/147 (65%), Gaps = 4/147 (2%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
+LSID N+LLY+ + PEH+AA F+ + R DVA+ E + E Y LLRNP V+ +PL
Sbjct 1 MLSIDANLLLYSFSTAAPEHEAARRFIESISSREDVALSEFIFTEFYLLLRNPVVLAQPL 60
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNE----VWVLAATPRIARRRLFDARLALTLRHH 116
PEAAEV Q +R++ RW + P E +W AA P ARRR++DAR AL+LR
Sbjct 61 TAPEAAEVIQHYRQHPRWKITGFPPTSRELHADLWHRAAAPTFARRRIYDARTALSLRAF 120
Query 117 GVDEFATRNINGFTDFGFSRVWDPITS 143
G+ EFAT N F DFGFSR+W+P+ S
Sbjct 121 GITEFATANEKDFQDFGFSRIWNPLIS 147
>gi|196231348|ref|ZP_03130207.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
gi|196224684|gb|EDY19195.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
Length=145
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/146 (46%), Positives = 88/146 (61%), Gaps = 6/146 (4%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
++S+DTNILL A P H AA AF+ GR DV + E +L+ELY LLRNP V+ RPL
Sbjct 1 MISLDTNILLPAVESSNPHHTAATAFVQSLQGRDDVVISEFILLELYVLLRNPAVLARPL 60
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRI-----ARRRLFDARLALTLRH 115
AA VC+ FR++ W +L P + + A PR+ ARRR +D R AL+L
Sbjct 61 SASAAATVCEAFRQHPHWQIL-GFPSDSRAFHDAFWPRLRDDPFARRRAYDWRSALSLLQ 119
Query 116 HGVDEFATRNINGFTDFGFSRVWDPI 141
GV EFAT N+ F GF++VW+P+
Sbjct 120 QGVTEFATVNVKDFEGLGFAKVWNPL 145
>gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfobacterium sp.]
Length=150
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (47%), Gaps = 8/150 (5%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAF----LVECAGRADVAVC--ELVLMELYQLLRNPT 54
+ +IDTN+++YA N P H A F + E +AVC VLME ++
Sbjct 1 MFAIDTNLIVYAHNIASPFHKRAKQFVERVMNERNAEGQLAVCLPAQVLMEFVHVITWQH 60
Query 55 VVTRPLEGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR 114
+ PL EA ++ Q + + + + + L+ + R+++FD LA TL+
Sbjct 61 L-EAPLSLQEAIQIVQDYLDSGVKIIFQQDSRIQTFISLSGSVT-TRKKVFDLALASTLK 118
Query 115 HHGVDEFATRNINGFTDFGFSRVWDPITSD 144
+ T N++ F F F +V +P++ +
Sbjct 119 DNHTIGLYTNNVDDFKGFDFLKVINPLSDE 148
>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=145
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (30%), Positives = 61/131 (47%), Gaps = 8/131 (6%)
Query 5 DTNILLYAQNRDCPEHDAAAAFLVECAGR-ADVAVCELVLMELYQLLRNPTVVTRPLEGP 63
DTN+L+YA N D P+H A+ F+ + D + VL+E Y ++ + VTRPLE
Sbjct 5 DTNVLVYAINTDAPQHTASRKFVEAVQQKNIDSVLPVQVLLEFYAIVTDHRRVTRPLEPE 64
Query 64 EAAEVCQTFRRNRRW--ALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEF 121
A + R L++ ++ E+ + + +FDA L ++ GV
Sbjct 65 TAWKQVNALRAIFPVIDGGLKSFDLLKEISL-----KTKGADIFDAYLVAQMKACGVSLL 119
Query 122 ATRNINGFTDF 132
T NI F+ F
Sbjct 120 CTYNIKDFSRF 130
>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/142 (29%), Positives = 63/142 (45%), Gaps = 8/142 (5%)
Query 5 DTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCEL-VLMELYQLLRNPTVVTRPLEGP 63
DTN+L+YA + D P H A L + G+ +L E ++ +P V +P
Sbjct 5 DTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQPWPAA 64
Query 64 EAAEVCQTFRRNRRWALL----ENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVD 119
A E + + +LL +A V+ E V P +A + DA A+ +R HG+
Sbjct 65 RAWEFIEAVLASPGLSLLLPTDRHATVVAE--VFGELPHLAGNVIHDAHTAILMREHGIR 122
Query 120 EFATRNINGFTDFGFSRVWDPI 141
TR+ + F F F DP+
Sbjct 123 RIYTRDTD-FHRFPFLEPIDPM 143
>gi|291571053|dbj|BAI93325.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=149
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (29%), Positives = 54/130 (42%), Gaps = 2/130 (1%)
Query 2 LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE 61
+ +DTNIL Y N P+H AA + R + V VL E Y + NP ++ PL+
Sbjct 8 IYLDTNILAYVANTKAPQHKAALE-IFRPTEREILCVSSQVLAEFYSYITNPAILATPLQ 66
Query 62 GPEAAEVCQTFRRNRRWALLENAPVMNEVWV-LAATPRIARRRLFDARLALTLRHHGVDE 120
EA + LL + E W+ L A ++ +FD + H V
Sbjct 67 PTEAIIRINRICQMPHICLLSTPVDLFERWIGLLAERPVSNGGVFDLLHIGIMLAHDVTT 126
Query 121 FATRNINGFT 130
T NI F+
Sbjct 127 IYTFNIKDFS 136
>gi|258593410|emb|CBE69749.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (29%), Positives = 62/139 (45%), Gaps = 10/139 (7%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFLVECA-GRADVAVCELVLMELYQLLRNPTVVTRP 59
++++DTN+L+YA D P H AA A + E A RA A+ L E ++ +PT+
Sbjct 1 MIAVDTNLLVYAHREDSPWHTAAYARIAELAESRAPWAIPWPCLHEFLAIVTHPTIYAPA 60
Query 60 LEGPEAAEVCQTFRRNRRWALLENAPVMNEVWV----LAATPRIARRRLFDARLALTLRH 115
A + + + LL M+ W+ +IA ++ DA +A R
Sbjct 61 TPLAIALDQVDAWLESPSLTLLTE---MSGYWIQLRHAIQKGQIAGPQVHDAHIAALCRL 117
Query 116 HGVDEFAT--RNINGFTDF 132
HGV E T R+ F D
Sbjct 118 HGVRELWTADRHFGRFPDL 136
>gi|291571198|dbj|BAI93470.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=149
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (28%), Positives = 53/130 (41%), Gaps = 2/130 (1%)
Query 2 LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE 61
+ +D NIL Y N P+H AA + R + V VL E Y + NP ++ PL+
Sbjct 8 IYLDMNILAYVANTKAPQHQAALE-IFRPTEREILCVSSQVLAEFYSYITNPAILATPLQ 66
Query 62 GPEAAEVCQTFRRNRRWALLENAPVMNEVWV-LAATPRIARRRLFDARLALTLRHHGVDE 120
EA + LL + E W+ L A + +FD + H V+
Sbjct 67 PTEAIIRINRICQMPHICLLSTPVELFEGWIGLLAERPVTNGGVFDLLHIWIVLAHEVNS 126
Query 121 FATRNINGFT 130
T NI F+
Sbjct 127 IYTFNIKDFS 136
>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/141 (29%), Positives = 59/141 (42%), Gaps = 3/141 (2%)
Query 3 SIDTNILLYAQNRDCPEHDAAAAFLVECAGRADV-AVCELVLMELYQLLRNPTVVTRPLE 61
S+D N+LLYA + P+H A F+ E A D+ + L+ ++ P + RPL
Sbjct 4 SVDVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPLS 63
Query 62 GPEA-AEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDE 120
+A V R L E ++ + A + + DA LA L+ HGV
Sbjct 64 PSDALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVGR 123
Query 121 FATRNINGFTDFGFSRVWDPI 141
T + F F F V DP
Sbjct 124 LYTAD-RDFRKFDFLEVVDPF 143
>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
62 more sequence titles
Length=145
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/144 (28%), Positives = 64/144 (45%), Gaps = 5/144 (3%)
Query 3 SIDTNILLYAQNRDCPEHDAAAAFLVE--CAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
+ D ++L++A +R P HD A LVE AG V + V + +++ +PT++ PL
Sbjct 4 TFDVDVLVHATHRASPFHDKAKT-LVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVD 119
A E + F + A V+ A P R L DA L +RHHG+
Sbjct 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
Query 120 EFATRNINGFTDFGFSRVWDPITS 143
+ + + F F R+ DP +
Sbjct 123 TIWSHDRD-FRKFEGIRIRDPFSG 145
>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT
140010059]
gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=145
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/144 (28%), Positives = 63/144 (44%), Gaps = 5/144 (3%)
Query 3 SIDTNILLYAQNRDCPEHDAAAAFLVE--CAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
+ D ++L++A +R P HD A LVE AG V + V + +++ +PT++ PL
Sbjct 4 TFDVDVLVHATHRASPFHDKAKT-LVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVD 119
A E + F + A V+ A P R L DA L +RHHG+
Sbjct 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
Query 120 EFATRNINGFTDFGFSRVWDPITS 143
+ + + F F R+ DP
Sbjct 123 TIWSHDRD-FRKFEGIRIRDPFAG 145
>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces hygroscopicus ATCC 53653]
gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces himastatinicus ATCC 53653]
Length=144
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/136 (28%), Positives = 61/136 (45%), Gaps = 10/136 (7%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFLVECA-GRADVAVCELVLMELYQLLRNPTVVTRP 59
++++DTNIL+YA D P H AAAA + A RA A+ L E + + +P + P
Sbjct 1 MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP 60
Query 60 LEGPEAAEVCQTFRRNRRWALLENA----PVMNEVWVLAATPRIARRRLFDARLALTLRH 115
+A + + LL A P + + + ++A + D R+A +
Sbjct 61 STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQ---MLEDGKVAGPMVHDGRIAALCAN 117
Query 116 HGVDEF--ATRNINGF 129
GV E A R+ + F
Sbjct 118 SGVRELWSADRDFSRF 133
>gi|306805540|ref|ZP_07442208.1| toxin [Mycobacterium tuberculosis SUMu007]
gi|306969936|ref|ZP_07482597.1| toxin [Mycobacterium tuberculosis SUMu009]
gi|308347839|gb|EFP36690.1| toxin [Mycobacterium tuberculosis SUMu007]
gi|308352492|gb|EFP41343.1| toxin [Mycobacterium tuberculosis SUMu009]
Length=145
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/144 (28%), Positives = 63/144 (44%), Gaps = 5/144 (3%)
Query 3 SIDTNILLYAQNRDCPEHDAAAAFLVE--CAGRADVAVCELVLMELYQLLRNPTVVTRPL 60
+ D ++L++A +R P HD A LVE AG V + V + ++ +PT++ PL
Sbjct 4 TFDVDVLVHATHRASPFHDKAKT-LVERFLAGPGLVYLLWPVALGYLWVVTHPTLLGAPL 62
Query 61 EGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVD 119
A E + F + A V+ A P R L DA L +RHHG+
Sbjct 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
Query 120 EFATRNINGFTDFGFSRVWDPITS 143
+ + + F F R+ DP +
Sbjct 123 TIWSHDRD-FRKFEGIRIRDPFSG 145
>gi|57642163|ref|YP_184641.1| nucleic acid-binding protein [Thermococcus kodakarensis KOD1]
gi|57160487|dbj|BAD86417.1| predicted nucleic acid-binding protein, containing PIN domain
[Thermococcus kodakarensis KOD1]
Length=128
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/115 (32%), Positives = 50/115 (44%), Gaps = 12/115 (10%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV 55
IDTN+ +YA RD E +A A L+ AG V +VL ELY R V
Sbjct 4 IDTNVFIYATLRDS-EFNAEARKLL--AGLERWIVPSIVLYELYWFFREEGYKSEEINNV 60
Query 56 VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARL 109
++ L P +C T + +R L N N++ +LA R +D RL
Sbjct 61 ISSILNSPRTRVICDTGKYTKRALELTRNPKRFNDMVILATAEDFKRLATYDKRL 115
>gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycobacterium bovis AF2122/97]
gi|121639611|ref|YP_979835.1| hypothetical protein BCG_3756c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992107|ref|YP_002646796.1| hypothetical protein JTY_3757 [Mycobacterium bovis BCG str. Tokyo
172]
10 more sequence titles
Length=145
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/143 (26%), Positives = 61/143 (43%), Gaps = 3/143 (2%)
Query 3 SIDTNILLYAQNRDCPEHDAAAAFLVECAGRAD-VAVCELVLMELYQLLRNPTVVTRPLE 61
+ D ++L++A +R P HD A + R V + V + +++ +PT++ PL
Sbjct 4 TFDVDVLVHATHRASPFHDKAKTLVERFLARPGLVYLLWPVALGYLRVVTHPTLLGAPLA 63
Query 62 GPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLF-DARLALTLRHHGVDE 120
A E + F + A V+ A P R L DA L +RHHG+
Sbjct 64 PEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIAT 123
Query 121 FATRNINGFTDFGFSRVWDPITS 143
+ + + F F R+ DP +
Sbjct 124 IWSHDRD-FRKFEGIRIRDPFSG 145
>gi|284055118|ref|ZP_06385328.1| hypothetical protein AplaP_27045 [Arthrospira platensis str.
Paraca]
Length=90
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/73 (33%), Positives = 34/73 (47%), Gaps = 5/73 (6%)
Query 2 LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE 61
+ +D NIL Y N P+H AA + R + V VL E Y + NP ++ PL+
Sbjct 15 IYLDMNILAYVANTKAPQHKAALE-IFRPTEREILCVSSQVLAEFYSYITNPAILATPLQ 73
Query 62 GPEAA----EVCQ 70
EA +CQ
Sbjct 74 PTEAIIRINRICQ 86
>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=145
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/152 (29%), Positives = 63/152 (42%), Gaps = 32/152 (21%)
Query 1 VLSIDTNILLYAQNRDCPEHDAAAAFL-VECAGRADVAVCELVLMELYQLLRNPTVVTRP 59
++ ID N+L+YA P+H AA A+L + + V + L+ +L NP V RP
Sbjct 1 MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP 60
Query 60 LEGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAAT---PRIAR----------RRLFD 106
L EA WA +E + VW+ T P++ R + D
Sbjct 61 LTAAEA------------WAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPD 108
Query 107 ARLALTLRHHGVDEFATRNINGFTDFG-FSRV 137
A LA HG+ +T DFG F R+
Sbjct 109 AHLAALALEHGLTLCSTDG-----DFGRFPRL 135
>gi|240104128|ref|YP_002960437.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus
gammatolerans EJ3]
gi|239911682|gb|ACS34573.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus
gammatolerans EJ3]
Length=128
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/125 (28%), Positives = 51/125 (41%), Gaps = 12/125 (9%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV 55
IDTN+ +YA RD ++ A L A V +VL ELY R V
Sbjct 4 IDTNVFVYAVLRDSEFNEEARKLL---ASLERWVVPSIVLYELYWFFRGEGYRVEEINAV 60
Query 56 VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR 114
++ LE P V + + +R L +N N++ +LA R +D +L
Sbjct 61 ISSILESPRTKVVGDSGKYTKRALELAKNPKRFNDMVILATAQEFGRLVTYDKKLRRDAE 120
Query 115 HHGVD 119
G+D
Sbjct 121 RLGID 125
>gi|262202854|ref|YP_003274062.1| twitching mobility protein PilT [Gordonia bronchialis DSM 43247]
gi|262086201|gb|ACY22169.1| PilT protein domain protein [Gordonia bronchialis DSM 43247]
Length=147
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/141 (28%), Positives = 62/141 (44%), Gaps = 8/141 (5%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCEL-VLMELYQLLRNPTVVTRPLEG 62
+DTN+LLYA + A LV GR+ V + VL E Y + V PL+
Sbjct 6 VDTNVLLYAYDDGGDHRHDRALELVADLGRSRAGVLSVQVLQEFYVNVTRKVRV--PLDP 63
Query 63 PEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEFA 122
P A E+ +T RW ++P+ ++V A A+ +DA + + + G D
Sbjct 64 PTAREILRTL---SRWP--AHSPLASDVIAAAEIAESAQLSFWDAMVIRSAQRMGCDTLW 118
Query 123 TRNINGFTDFGFSRVWDPITS 143
+ ++N RV +P S
Sbjct 119 SEDLNDGQVIAGVRVRNPFAS 139
>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/154 (29%), Positives = 68/154 (45%), Gaps = 28/154 (18%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPLEG 62
+D N+LLYA + + AAA++L E AG + V + + ++ +P V PL G
Sbjct 3 VDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPLSG 62
Query 63 PEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIAR-------------RRLFDARL 109
P A +R W + PV VW+ AT AR + DA+L
Sbjct 63 PAA------WRYVAEWLAV---PV---VWIPPATETTARVYARLSEQVEITGNLVPDAQL 110
Query 110 ALTLRHHGVDEFATRNINGFTDFGFSRVWDPITS 143
A HGV E A+ + + F F R +P+++
Sbjct 111 AALAVEHGV-ELASADTD-FMRFPGLRWMNPLSA 142
>gi|341582789|ref|YP_004763281.1| nucleic acid-binding protein [Thermococcus sp. 4557]
gi|340810447|gb|AEK73604.1| nucleic acid-binding protein [Thermococcus sp. 4557]
Length=128
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/124 (27%), Positives = 47/124 (38%), Gaps = 12/124 (9%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV 55
IDTN+ +YA RD + A L AG V +VL ELY R V
Sbjct 4 IDTNVFIYAVLRDSEFNGEARKLL---AGLERWTVPSIVLYELYWFFREEGYSGEEIGKV 60
Query 56 VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR 114
++ L +C + +R L N N++ +LA R +D RL
Sbjct 61 ISSILNSQRTKVICDGGKYTKRALELTRNPKRFNDMVILATAEDFKRLATYDKRLKKEAE 120
Query 115 HHGV 118
G+
Sbjct 121 KLGI 124
>gi|288959012|ref|YP_003449353.1| PIN domain-containing protein [Azospirillum sp. B510]
gi|288911320|dbj|BAI72809.1| PIN domain protein [Azospirillum sp. B510]
Length=155
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/147 (28%), Positives = 62/147 (43%), Gaps = 12/147 (8%)
Query 2 LSIDTNILLYAQNRDCPEHDAAAAFLVECAGRAD--VAVCELVLMELYQLLRNPTVVTRP 59
+S DTNIL YA ++ P+ A A L+E A A V + VL ELY L R
Sbjct 6 VSFDTNILFYAADQRDPDKYAVALDLLERAATAGSPVLIAGQVLCELYASLAR----KRI 61
Query 60 LEGPEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIARR-RLFDARLALTLRHHGV 118
L EA ++ + + + E PV ++ + A A +++DA L +G
Sbjct 62 LPPAEALDLVRDYEQT-----FERLPVASDAFRRAFEAVAAHGLQIWDAVLWANADAYGC 116
Query 119 DEFATRNINGFTDFGFSRVWDPITSDG 145
+ + G G +P T DG
Sbjct 117 KYLVSEDFQGGRRLGGVTFLNPFTVDG 143
>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 37/70 (53%), Gaps = 1/70 (1%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPLEG 62
+D NILLYA N+D P H +A +L + +G + V++ +L P + +PL
Sbjct 4 LDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKPLSP 63
Query 63 PEAAEVCQTF 72
+A ++ ++
Sbjct 64 DQAFDLVASW 73
>gi|189423148|ref|YP_001950325.1| PilT protein domain-containing protein [Geobacter lovleyi SZ]
gi|189419407|gb|ACD93805.1| PilT protein domain protein [Geobacter lovleyi SZ]
Length=138
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/74 (34%), Positives = 38/74 (52%), Gaps = 7/74 (9%)
Query 2 LSIDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPL 60
L +DT+++L R P +DAAA E AG + V L L+ LLR +
Sbjct 5 LFVDTDVVLDLLARREPFYDAAARLFSEAEAGNLTLCVSSLTFANLFYLLR------KQH 58
Query 61 EGPEAAEVCQTFRR 74
GP+A +V +TF++
Sbjct 59 SGPQAQQVLRTFKQ 72
>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp.
JDM601]
gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/154 (27%), Positives = 66/154 (43%), Gaps = 28/154 (18%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVECA-GRADVAVCELVLMELYQLLRNPTVVTRPLEG 62
+D N+LLYA + D + AAA+L E G + + + +++ +P V PL
Sbjct 3 LDANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPLPP 62
Query 63 PEAAEVCQTFRRNRRWALLENAPVMNEVWVLAATPRIAR-------------RRLFDARL 109
EA W+ + + + VW+ AT AR + DA+L
Sbjct 63 SEA------------WSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQL 110
Query 110 ALTLRHHGVDEFATRNINGFTDFGFSRVWDPITS 143
A HGV E A+ + + F F R ++P+TS
Sbjct 111 AALAIEHGV-ELASAD-SDFQRFPGLRWFNPLTS 142
>gi|284052655|ref|ZP_06382865.1| hypothetical protein AplaP_14398 [Arthrospira platensis str.
Paraca]
gi|291567104|dbj|BAI89376.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=147
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/145 (28%), Positives = 59/145 (41%), Gaps = 13/145 (8%)
Query 4 IDTNILLYAQNRDCPEH-DAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE- 61
IDTNILL + + + H DA A + A DV + L+E + V TRP++
Sbjct 5 IDTNILLRSADANHSMHADAVTATNILLAQGGDVCIIPQNLIEFWN------VYTRPVDK 58
Query 62 ---GPEAAEVCQTFRRNRRWALL--ENAPVMNEVWVLAATPRIARRRLFDARLALTLRHH 116
G E R + LL + + +E L T + + DARL + H
Sbjct 59 NGLGHTPREAAAEVNRLKGLFLLLPDRLAIYSEWERLVLTYGVRGVNVHDARLVAAMLVH 118
Query 117 GVDEFATRNINGFTDFGFSRVWDPI 141
G+ T NI F +G P+
Sbjct 119 GLTHILTFNIRDFARYGEVTAMHPM 143
>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae
DSM 12333]
gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM
12333]
Length=143
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (30%), Positives = 37/77 (49%), Gaps = 2/77 (2%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVEC-AGRADVAVCELVLMELYQLLRNPTVVTRPL-E 61
+D N+LLYA + P H AA +L E +G A V + L+ ++ +P +PL
Sbjct 3 VDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPLTP 62
Query 62 GPEAAEVCQTFRRNRRW 78
G A + + R + W
Sbjct 63 GAAWAFITEWLRADPAW 79
>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (31%), Positives = 31/59 (53%), Gaps = 1/59 (1%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFL-VECAGRADVAVCELVLMELYQLLRNPTVVTRPLE 61
+D N+LLYA N+D P+H + +L +G V + +V+ ++ N + RPL
Sbjct 4 VDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERPLS 62
>gi|83590841|ref|YP_430850.1| PilT protein-like [Moorella thermoacetica ATCC 39073]
gi|83573755|gb|ABC20307.1| PilT protein-like protein [Moorella thermoacetica ATCC 39073]
Length=149
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/147 (27%), Positives = 70/147 (48%), Gaps = 17/147 (11%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVE-CAGRADVAVCELVLMELYQLLRNPTVVTRPLEG 62
+DTN+++YA +R PE A ++E A R A+ VL E + VTR ++
Sbjct 7 VDTNVMVYAYDRSEPEKQEKALQVLEFLAKRRIGAISAQVLAEFF------VTVTRKIQQ 60
Query 63 PEAAEVCQTFRRNR--RWALLENAPVMNEVWVLAATPRIARRRL--FDARLALTLRHHGV 118
P AE+ +N W +L+ + + ++ A+ + +L +DA++ T R + +
Sbjct 61 PLTAELAYQRVQNYLASWTVLD----LTGLIIIEASRGVREYQLSYWDAQIWATARLNQI 116
Query 119 DEFATRNIN-GFTDFGFSRVWDPITSD 144
+ + + N G T G S V +P D
Sbjct 117 NIVLSEDFNPGSTLEGVSFV-NPFDGD 142
>gi|14520334|ref|NP_125809.1| hypothetical protein PAB2271 [Pyrococcus abyssi GE5]
gi|5457549|emb|CAB49040.1| Hypothetical protein PAB2271 [Pyrococcus abyssi GE5]
Length=128
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/125 (28%), Positives = 52/125 (42%), Gaps = 12/125 (9%)
Query 4 IDTNILLYAQNRDCPEHDAAAAFLVECAGRADVAVCELVLMELYQLLRNP--------TV 55
IDTN+ +YA RD E ++ A L+ R V +VL ELY R V
Sbjct 4 IDTNVFIYAILRDS-EFNSRARNLLASLERW--IVPSIVLYELYWFFREEGYGRDEITNV 60
Query 56 VTRPLEGPEAAEVCQTFRRNRR-WALLENAPVMNEVWVLAATPRIARRRLFDARLALTLR 114
++ L P + R +R L +N N++ +LA + R +D RL
Sbjct 61 ISSILNSPRTRVIGDNGRYTKRALELTKNPRRFNDMIILATAEQFKRLATYDKRLKKEAE 120
Query 115 HHGVD 119
G++
Sbjct 121 RLGIE 125
>gi|290959461|ref|YP_003490643.1| hypothetical protein SCAB_50561 [Streptomyces scabiei 87.22]
gi|260648987|emb|CBG72101.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=192
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/59 (38%), Positives = 31/59 (53%), Gaps = 5/59 (8%)
Query 88 NEVWVLAATPRIARRRLFDARLALTLRHHGV-DEFATRNINGFTDFGFSRVW-DPITSD 144
+VW L TPR RR +A L LT + G A R + FTD+ +R+W +P+ D
Sbjct 130 GQVWQLCGTPRRDRR---EAELFLTAQRRGPRPAIAYRLVQEFTDYDVTRIWGEPVRMD 185
>gi|209525514|ref|ZP_03274053.1| PilT protein domain protein [Arthrospira maxima CS-328]
gi|209494013|gb|EDZ94329.1| PilT protein domain protein [Arthrospira maxima CS-328]
Length=147
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/137 (28%), Positives = 57/137 (42%), Gaps = 13/137 (9%)
Query 4 IDTNILLYAQNRDCPEH-DAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLE- 61
IDTNILL + + + + DA A + A DV + L+E + V TRP++
Sbjct 5 IDTNILLRSADANHSMYADAVTATNILLAQGGDVCIIPQNLIEFWN------VYTRPVDK 58
Query 62 ---GPEAAEVCQTFRRNRRWALL--ENAPVMNEVWVLAATPRIARRRLFDARLALTLRHH 116
G E R + LL + + +E L T + + DARL + H
Sbjct 59 NGLGHTPTEAAAEVNRLKGLFLLLPDRLAIYSEWERLVLTYGVRGVNVHDARLVAAMLIH 118
Query 117 GVDEFATRNINGFTDFG 133
G+ T NI F +G
Sbjct 119 GLTHILTFNIRDFARYG 135
>gi|163848473|ref|YP_001636517.1| PilT domain-containing protein [Chloroflexus aurantiacus J-10-fl]
gi|222526402|ref|YP_002570873.1| PilT protein domain-containing protein [Chloroflexus sp. Y-400-fl]
gi|163669762|gb|ABY36128.1| PilT protein domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222450281|gb|ACM54547.1| PilT protein domain protein [Chloroflexus sp. Y-400-fl]
Length=155
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/132 (26%), Positives = 55/132 (42%), Gaps = 9/132 (6%)
Query 4 IDTNILLYAQNRDCPEHDAA-AAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEG 62
+DTNIL+YA P +D A AA A + + VL E L P + G
Sbjct 11 LDTNILVYASVDTSPFYDLARAAITAFEAHHTPLWISRQVLREYLATLARPHI------G 64
Query 63 PEAAEVCQTFRR-NRRWALLENAPVMNEVWVLAATPRIARRRLFDARLALTLRHHGVDEF 121
E+ R+ R+ + E +P++ +L R R++ D + T++ G+
Sbjct 65 IPITELTAAVRQFAVRFHIAEESPLVT-AQLLTLLERGYSRQIHDTNIVATMQAFGIKRI 123
Query 122 ATRNINGFTDFG 133
T N + F F
Sbjct 124 LTNNPDDFAPFA 135
>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144
Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/82 (27%), Positives = 37/82 (46%), Gaps = 1/82 (1%)
Query 5 DTNILLYAQNRDCPEH-DAAAAFLVECAGRADVAVCELVLMELYQLLRNPTVVTRPLEGP 63
D N+L+YA N D P H DA A + + V + + +L+ + V+ P+E
Sbjct 5 DVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLPWASALGFIRLMTHRAVLVMPVEPS 64
Query 64 EAAEVCQTFRRNRRWALLENAP 85
A E +++ + LE P
Sbjct 65 RAVEYVRSWHSRSNVSALEPGP 86
Lambda K H
0.326 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128154014136
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40