BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0246

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607387|ref|NP_214760.1|  integral membrane protein [Mycobact...   842    0.0   
gi|15839627|ref|NP_334664.1|  hypothetical protein MT0260 [Mycoba...   842    0.0   
gi|31791424|ref|NP_853917.1|  integral membrane protein [Mycobact...   841    0.0   
gi|340625284|ref|YP_004743736.1|  putative integral membrane prot...   840    0.0   
gi|289572825|ref|ZP_06453052.1|  conserved hypothetical protein [...   838    0.0   
gi|308394875|ref|ZP_07491835.2|  conserved membrane protein [Myco...   817    0.0   
gi|183980536|ref|YP_001848827.1|  integral membrane protein [Myco...   521    8e-146
gi|167968968|ref|ZP_02551245.1|  hypothetical protein MtubH3_1341...   381    1e-103
gi|183983245|ref|YP_001851536.1|  hypothetical protein MMAR_3254 ...   162    7e-38 
gi|118618854|ref|YP_907186.1|  hypothetical protein MUL_3569 [Myc...   148    1e-33 
gi|289754317|ref|ZP_06513695.1|  integral membrane protein [Mycob...   148    2e-33 
gi|289758329|ref|ZP_06517707.1|  integral membrane protein [Mycob...   146    5e-33 
gi|308232067|ref|ZP_07414798.2|  conserved membrane protein [Myco...   146    7e-33 
gi|15609346|ref|NP_216725.1|  integral membrane protein [Mycobact...   146    8e-33 
gi|240168270|ref|ZP_04746929.1|  hypothetical protein MkanA1_0309...   144    4e-32 
gi|289574895|ref|ZP_06455122.1|  conserved membrane protein [Myco...   143    5e-32 
gi|340627214|ref|YP_004745666.1|  putative integral membrane prot...   135    1e-29 
gi|258652575|ref|YP_003201731.1|  hypothetical protein Namu_2367 ...   110    3e-22 
gi|254510863|ref|ZP_05122930.1|  hypothetical protein RKLH11_1398...  57.0    6e-06 
gi|289762371|ref|ZP_06521749.1|  conserved integral membrane prot...  53.1    9e-05 
gi|95929421|ref|ZP_01312164.1|  major facilitator superfamily MFS...  40.4    0.60  
gi|71906400|ref|YP_283987.1|  flagellar biosynthesis protein FliR...  38.9    1.9   
gi|172040263|ref|YP_001799977.1|  hypothetical protein cur_0583 [...  38.5    2.1   


>gi|15607387|ref|NP_214760.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|121636159|ref|YP_976382.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148660011|ref|YP_001281534.1| putative integral membrane protein [Mycobacterium tuberculosis 
H37Ra]
 66 more sequence titles
 Length=436

 Score =  842 bits (2176),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/436 (99%), Positives = 436/436 (100%), Gaps = 0/436 (0%)

Query  1    VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60
            +AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct  1    MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60

Query  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120
            PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120

Query  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180
            VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180

Query  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240
            RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240

Query  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300
            QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300

Query  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360
            VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360

Query  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420
            TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420

Query  421  RGLPQVSRTSRPKTGG  436
            RGLPQVSRTSRPKTGG
Sbjct  421  RGLPQVSRTSRPKTGG  436


>gi|15839627|ref|NP_334664.1| hypothetical protein MT0260 [Mycobacterium tuberculosis CDC1551]
 gi|254233624|ref|ZP_04926950.1| hypothetical protein TBCG_00245 [Mycobacterium tuberculosis C]
 gi|13879745|gb|AAK44478.1| hypothetical protein MT0260 [Mycobacterium tuberculosis CDC1551]
 gi|124603417|gb|EAY61692.1| hypothetical protein TBCG_00245 [Mycobacterium tuberculosis C]
Length=449

 Score =  842 bits (2176),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/436 (100%), Positives = 436/436 (100%), Gaps = 0/436 (0%)

Query  1    VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60
            VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct  14   VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  73

Query  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120
            PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct  74   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  133

Query  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180
            VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct  134  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  193

Query  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240
            RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct  194  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  253

Query  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300
            QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct  254  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  313

Query  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360
            VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct  314  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  373

Query  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420
            TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct  374  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  433

Query  421  RGLPQVSRTSRPKTGG  436
            RGLPQVSRTSRPKTGG
Sbjct  434  RGLPQVSRTSRPKTGG  449


>gi|31791424|ref|NP_853917.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 gi|31617009|emb|CAD93116.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis 
AF2122/97]
Length=436

 Score =  841 bits (2172),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/436 (99%), Positives = 435/436 (99%), Gaps = 0/436 (0%)

Query  1    VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60
            +AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct  1    MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60

Query  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120
            PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120

Query  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180
            VTLIGVVS ISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct  121  VTLIGVVSVISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180

Query  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240
            RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240

Query  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300
            QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300

Query  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360
            VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360

Query  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420
            TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420

Query  421  RGLPQVSRTSRPKTGG  436
            RGLPQVSRTSRPKTGG
Sbjct  421  RGLPQVSRTSRPKTGG  436


>gi|340625284|ref|YP_004743736.1| putative integral membrane protein [Mycobacterium canettii CIPT 
140010059]
 gi|340003474|emb|CCC42594.1| putative conserved integral membrane protein [Mycobacterium canettii 
CIPT 140010059]
Length=436

 Score =  840 bits (2171),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/436 (99%), Positives = 435/436 (99%), Gaps = 0/436 (0%)

Query  1    VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60
            +AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct  1    MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60

Query  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120
            PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120

Query  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180
            VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180

Query  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240
            RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTN WYRRYLLV
Sbjct  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNSWYRRYLLV  240

Query  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300
            QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300

Query  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360
            VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360

Query  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420
            TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420

Query  421  RGLPQVSRTSRPKTGG  436
            RGLPQVSRTSRPKTGG
Sbjct  421  RGLPQVSRTSRPKTGG  436


>gi|289572825|ref|ZP_06453052.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289537256|gb|EFD41834.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=562

 Score =  838 bits (2166),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/436 (99%), Positives = 435/436 (99%), Gaps = 0/436 (0%)

Query  1    VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60
            +AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct  1    MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF  60

Query  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120
            PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct  61   PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN  120

Query  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180
            VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct  121  VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS  180

Query  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240
            RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct  181  RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV  240

Query  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300
            QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct  241  QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF  300

Query  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360
            VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct  301  VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR  360

Query  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV  420
            TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSA RFAPAKSVDV
Sbjct  361  TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSARRFAPAKSVDV  420

Query  421  RGLPQVSRTSRPKTGG  436
            RGLPQVSRTSRPKTGG
Sbjct  421  RGLPQVSRTSRPKTGG  436


>gi|308394875|ref|ZP_07491835.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|308367592|gb|EFP56443.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323717237|gb|EGB26446.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=423

 Score =  817 bits (2111),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/423 (100%), Positives = 423/423 (100%), Gaps = 0/423 (0%)

Query  14   MSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVV  73
            MSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVV
Sbjct  1    MSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVV  60

Query  74   APPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  133
            APPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV
Sbjct  61   APPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  120

Query  134  AFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAM  193
            AFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAM
Sbjct  121  AFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAM  180

Query  194  AISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSF  253
            AISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSF
Sbjct  181  AISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSF  240

Query  254  HSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVL  313
            HSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVL
Sbjct  241  HSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVL  300

Query  314  SIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINA  373
            SIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINA
Sbjct  301  SIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINA  360

Query  374  GLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPK  433
            GLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPK
Sbjct  361  GLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPK  420

Query  434  TGG  436
            TGG
Sbjct  421  TGG  423


>gi|183980536|ref|YP_001848827.1| integral membrane protein [Mycobacterium marinum M]
 gi|183173862|gb|ACC38972.1| conserved integral membrane protein [Mycobacterium marinum M]
Length=416

 Score =  521 bits (1342),  Expect = 8e-146, Method: Compositional matrix adjust.
 Identities = 295/414 (72%), Positives = 338/414 (82%), Gaps = 0/414 (0%)

Query  3    KTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPA  62
            +TS      DG SKR+L L+I QSGFY  ALQLGNV IVLPFVVAEL AELW+AALIFPA
Sbjct  3    ETSRPEGRIDGPSKRVLWLVITQSGFYRTALQLGNVPIVLPFVVAELHAELWMAALIFPA  62

Query  63   FTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVT  122
            FTAG AIGN++AP  +AAVPRR RL IIV  L VLA VNA+ AT+G G+ AG L +VNV 
Sbjct  63   FTAGAAIGNMLAPAVLAAVPRRRRLVIIVFGLTVLAAVNAMGATMGDGNEAGSLFLVNVL  122

Query  123  LIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRN  182
             IG VSA SFVAFADLVAAMPSGT RA++LLTE GVGAALTA+V   LSFVP +  L+ N
Sbjct  123  FIGAVSAFSFVAFADLVAAMPSGTDRAQVLLTEAGVGAALTAIVTVALSFVPHEDHLTNN  182

Query  183  IHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQV  242
            I LLWTA  AMAIS  IC  LP RIVP VH APGL+K+V+VG  A+R   WYRRYL VQ+
Sbjct  183  IRLLWTATAAMAISGLICLGLPQRIVPPVHKAPGLNKVVHVGLAALRRESWYRRYLAVQL  242

Query  243  LFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVG  302
            LFGSVVLGSSF+SIRVAA+PGD+ D VV +VLFVCVGL+GGI +WNR+RERFGLVGLF G
Sbjct  243  LFGSVVLGSSFYSIRVAAIPGDEHDNVVVLVLFVCVGLVGGIRVWNRIRERFGLVGLFAG  302

Query  303  SALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTS  362
            SA++SIAAAV++IAF LAG+WPN+VAI LVIAL SIANQSVFTAGQLWIA +A+P LR S
Sbjct  303  SAILSIAAAVIAIAFQLAGSWPNLVAISLVIALASIANQSVFTAGQLWIAHNADPTLRIS  362

Query  363  LISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAK  416
            LI+FG+LVI+AGLVG+   LG++AQ HD VWPVMIVLLLN+ AAYSA R APA 
Sbjct  363  LIAFGRLVISAGLVGLSSLLGILAQFHDVVWPVMIVLLLNVAAAYSAKRLAPAD  416


>gi|167968968|ref|ZP_02551245.1| hypothetical protein MtubH3_13417 [Mycobacterium tuberculosis 
H37Ra]
Length=197

 Score =  381 bits (978),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 196/197 (99%), Positives = 197/197 (100%), Gaps = 0/197 (0%)

Query  240  VQVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGL  299
            +QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGL
Sbjct  1    MQVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGL  60

Query  300  FVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGL  359
            FVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGL
Sbjct  61   FVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGL  120

Query  360  RTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVD  419
            RTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVD
Sbjct  121  RTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVD  180

Query  420  VRGLPQVSRTSRPKTGG  436
            VRGLPQVSRTSRPKTGG
Sbjct  181  VRGLPQVSRTSRPKTGG  197


>gi|183983245|ref|YP_001851536.1| hypothetical protein MMAR_3254 [Mycobacterium marinum M]
 gi|183176571|gb|ACC41681.1| conserved hypothetical integral membrane protein [Mycobacterium 
marinum M]
Length=498

 Score =  162 bits (411),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 140/430 (33%), Positives = 212/430 (50%), Gaps = 29/430 (6%)

Query  22   IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAV  81
            ++ Q  FYSA +Q+G+ ++VLP + A      W+A L+FPAF+ G  +GN V+P  +   
Sbjct  18   LVTQGSFYSAGMQMGSGAVVLPVICAH-QGLTWVAGLLFPAFSIGAILGNSVSPLILQRF  76

Query  82   PR-RHRLFIIVS-CLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLV  139
             + RH L   +S   A L   NA  A    G++   +  V  T  GVV+ +S VA+ D++
Sbjct  77   GQYRHLLMAAISASAATLILANA--AVPWTGALVAAVFFVTATASGVVAGVSGVAYTDMI  134

Query  140  AAMPSGTARARILLTEVGVGAALTAVVAATLSFVP---DQHPLSRNIHLLWTAAVAMAIS  196
            +   S   R  +LLT+  VG+ L   V  TL  VP       ++R   LLW  A +M ++
Sbjct  135  SNKLSVLRRGELLLTQGAVGSLLATGV--TLVIVPRLAHGDEMARYHDLLWLGAASMIVA  192

Query  197  A-AICRALPHRIVPRVHAAPG----LHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGS  251
              A     P R      +AP     L  +   G+   R   W+RRY    +LF  + LG+
Sbjct  193  GVAALFVGPMR---SASSAPTVRLPLRDIYRQGFEIARREPWFRRYATTYLLFAPISLGT  249

Query  252  SFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAA  311
            +F S+R A   G     +  +V+   + L+ G  LW  V  RFG+ G+ +GS+L SIAAA
Sbjct  250  TFFSLRAAQSSGS----LHVLVILSSIALVIGSLLWRAVNRRFGVRGMLLGSSLFSIAAA  305

Query  312  VLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVI  371
            ++ I  +L G W  + A G    L ++A Q+V  A   WI+  A    R +LI FG  + 
Sbjct  306  LVCIVAELCGQWTQMWAYGTAFLLATVAAQTVVAASISWISMFAPEQHRATLICFGATLA  365

Query  372  NAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQ------  425
                  +G  LG +AQ H  + PV++ L L + AA ++ R AP  S  +    Q      
Sbjct  366  AVVSTLLGAVLGELAQRHATIGPVLVSLTLAIIAAVASLR-APGLSQTIEAQSQLVEKAP  424

Query  426  VSRTSRPKTG  435
            + R SR + G
Sbjct  425  MRRLSRARRG  434


>gi|118618854|ref|YP_907186.1| hypothetical protein MUL_3569 [Mycobacterium ulcerans Agy99]
 gi|118570964|gb|ABL05715.1| conserved hypothetical integral membrane protein [Mycobacterium 
ulcerans Agy99]
Length=470

 Score =  148 bits (374),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 134/419 (32%), Positives = 203/419 (49%), Gaps = 29/419 (6%)

Query  33   LQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAVPR-RHRLFIIV  91
            +Q+G+ ++VLP + A      W+A L+FPAF+ G  +GN V+P  +    + RH L   +
Sbjct  1    MQMGSGAVVLPVICAH-QGLTWVAGLLFPAFSIGAILGNSVSPLILQRFGQYRHLLMAAI  59

Query  92   S-CLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLVAAMPSGTARAR  150
            S   A L   NA  A    G++   +  V  T  GVV+ +S VA+ D+V+   S   R  
Sbjct  60   SASAATLILANA--AVPWTGALVAAVFFVTATASGVVAGVSGVAYTDMVSNKLSVLRRGE  117

Query  151  ILLTEVGVGAALTAVVAATLSFVP---DQHPLSRNIHLLWTAAVAMAISA-AICRALPHR  206
            +LLT+   G+ L   V  TL  VP       ++R   LLW  A +M ++  A     P R
Sbjct  118  LLLTQGAFGSLLATGV--TLVIVPRLAHGDEMARYHDLLWLGAASMIVAGVAALFVGPMR  175

Query  207  IVPRVHAAPG----LHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSIRVAAVP  262
                  +AP     L  +   G+   R   W+RRY    +LF  + LG++F S+R A   
Sbjct  176  ---SASSAPTVRLPLRDIYRQGFEIARREPWFRRYATTYLLFAPISLGTTFFSLRAAQSS  232

Query  263  GDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVLSIAFDLAGA  322
            G     +  +V+   +  + G  LW  V  RFG+ G+ +GS+L SIAAA++ I  +L G 
Sbjct  233  GS----LHVLVILSSIAFVIGSLLWRAVNRRFGVRGMLLGSSLFSIAAALVCIVAELCGQ  288

Query  323  WPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINAGLVGMGLAL  382
            W  + A G    L ++A Q+V  A   WI+  A    R +LI FG  +       +G  L
Sbjct  289  WTQMWAYGTAFLLATVAAQTVVAASISWISMFAPEQHRATLICFGATLAAVVSTLLGAVL  348

Query  383  GLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQ------VSRTSRPKTG  435
            G +AQ H  + PV++ L L + AA ++ R AP  S  +    Q      + R SR + G
Sbjct  349  GELAQRHATIGPVLVSLTLAIIAAVASLR-APGLSQTIEAQSQLVDKAPMRRLSRARRG  406


>gi|289754317|ref|ZP_06513695.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289694904|gb|EFD62333.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
Length=482

 Score =  148 bits (373),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)

Query  16   KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
            + +   ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P
Sbjct  29   RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP  87

Query  76   PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  133
              +    + RH L   +S  A  L   NA     G G  A  L        GVV+ +S V
Sbjct  88   LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV  145

Query  134  AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA  192
            A+ D++++M     R  +LLT+   G+ L T V    +  +   + ++R   LLW  A  
Sbjct  146  AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG  205

Query  193  MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG  250
            +  S  A     P R V    A    L ++ ++G+   R+  W+RRY+   +LF  + LG
Sbjct  206  LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG  265

Query  251  SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA  310
            ++F S+R A   G     +  +V+   +GL+ G  LW ++   FG+ GL +GSAL++ AA
Sbjct  266  TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA  321

Query  311  AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV  370
            A+L +  +  G W +  A G    L ++A Q+V  A   WI+  A    R +LI  G  +
Sbjct  322  ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL  381

Query  371  INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R  428
                   +G+ALG IAQ H  +WPV++VL L + AA ++ R      V     PQ +  +
Sbjct  382  AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ  441

Query  429  TSRPKT  434
              RP T
Sbjct  442  AYRPAT  447


>gi|289758329|ref|ZP_06517707.1| integral membrane protein [Mycobacterium tuberculosis T85]
 gi|289713893|gb|EFD77905.1| integral membrane protein [Mycobacterium tuberculosis T85]
Length=512

 Score =  146 bits (369),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)

Query  16   KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
            + +   ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P
Sbjct  14   RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP  72

Query  76   PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  133
              +    + RH L   +S  A  L   NA     G G  A  L        GVV+ +S V
Sbjct  73   LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV  130

Query  134  AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA  192
            A+ D++++M     R  +LLT+   G+ L T V    +  +   + ++R   LLW  A  
Sbjct  131  AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG  190

Query  193  MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG  250
            +  S  A     P R V    A    L ++ ++G+   R+  W+RRY+   +LF  + LG
Sbjct  191  LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG  250

Query  251  SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA  310
            ++F S+R A   G     +  +V+   +GL+ G  LW ++   FG+ GL +GSAL++ AA
Sbjct  251  TTFFSLRAAQSSGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA  306

Query  311  AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV  370
            A+L +  +  G W +  A G    L ++A Q+V  A   WI+  A    R +LI  G  +
Sbjct  307  ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL  366

Query  371  INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R  428
                   +G+ALG IAQ H  +WPV++VL L + AA ++ R      V     PQ +  +
Sbjct  367  AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ  426

Query  429  TSRPKT  434
              RP T
Sbjct  427  AYRPAT  432


>gi|308232067|ref|ZP_07414798.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308369656|ref|ZP_07418575.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308370946|ref|ZP_07423307.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 22 more sequence titles
 Length=503

 Score =  146 bits (368),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)

Query  16   KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
            + +   ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P
Sbjct  5    RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP  63

Query  76   PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  133
              +    + RH L   +S  A  L   NA     G G  A  L        GVV+ +S V
Sbjct  64   LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV  121

Query  134  AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA  192
            A+ D++++M     R  +LLT+   G+ L T V    +  +   + ++R   LLW  A  
Sbjct  122  AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG  181

Query  193  MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG  250
            +  S  A     P R V    A    L ++ ++G+   R+  W+RRY+   +LF  + LG
Sbjct  182  LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG  241

Query  251  SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA  310
            ++F S+R A   G     +  +V+   +GL+ G  LW ++   FG+ GL +GSAL++ AA
Sbjct  242  TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA  297

Query  311  AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV  370
            A+L +  +  G W +  A G    L ++A Q+V  A   WI+  A    R +LI  G  +
Sbjct  298  ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL  357

Query  371  INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R  428
                   +G+ALG IAQ H  +WPV++VL L + AA ++ R      V     PQ +  +
Sbjct  358  AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ  417

Query  429  TSRPKT  434
              RP T
Sbjct  418  AYRPAT  423


>gi|15609346|ref|NP_216725.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15841700|ref|NP_336737.1| hypothetical protein MT2265 [Mycobacterium tuberculosis CDC1551]
 gi|31793388|ref|NP_855881.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 43 more sequence titles
 Length=512

 Score =  146 bits (368),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)

Query  16   KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
            + +   ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P
Sbjct  14   RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP  72

Query  76   PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  133
              +    + RH L   +S  A  L   NA     G G  A  L        GVV+ +S V
Sbjct  73   LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV  130

Query  134  AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA  192
            A+ D++++M     R  +LLT+   G+ L T V    +  +   + ++R   LLW  A  
Sbjct  131  AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG  190

Query  193  MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG  250
            +  S  A     P R V    A    L ++ ++G+   R+  W+RRY+   +LF  + LG
Sbjct  191  LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG  250

Query  251  SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA  310
            ++F S+R A   G     +  +V+   +GL+ G  LW ++   FG+ GL +GSAL++ AA
Sbjct  251  TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA  306

Query  311  AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV  370
            A+L +  +  G W +  A G    L ++A Q+V  A   WI+  A    R +LI  G  +
Sbjct  307  ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL  366

Query  371  INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R  428
                   +G+ALG IAQ H  +WPV++VL L + AA ++ R      V     PQ +  +
Sbjct  367  AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ  426

Query  429  TSRPKT  434
              RP T
Sbjct  427  AYRPAT  432


>gi|240168270|ref|ZP_04746929.1| hypothetical protein MkanA1_03097 [Mycobacterium kansasii ATCC 
12478]
Length=468

 Score =  144 bits (362),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 139/417 (34%), Positives = 219/417 (53%), Gaps = 15/417 (3%)

Query  22   IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAV  81
            ++ Q  FY+  +QL N ++VLPF+ A      W A ++FPA++ G  +GN  A PA+   
Sbjct  23   LVTQGTFYTTGMQLSNSAVVLPFICAH-QGITWAAGMLFPAYSIGLIMGNS-ASPAILQR  80

Query  82   PRRHRLFIIVSCLAVLAGVNALCATIG-KGSVAGILLVVNVTLIGVVSAISFVAFADLVA  140
              R R  ++ +  A +A +    A I   G  A  + ++     GVV A++ VA+ D+V+
Sbjct  81   AGRMRHVLLSATAAAVAALLIWDAVIPWTGVYAAAVFLLTTAAAGVVIAVATVAYTDMVS  140

Query  141  AMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVAM-AISAA  198
            +      R  + LT+   G+ L T V+      +     ++    LLW  A+A+ A S A
Sbjct  141  SKLPARRRGELFLTQGAAGSTLATGVMLLIAPMLASGDQIAHYRDLLWLGALALIASSVA  200

Query  199  ICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSIRV  258
                 P R      A P L ++   G+   +   W+R+Y +  +LF  + LG++F+S+R 
Sbjct  201  ALLVGPMRSA-STTARPPLREIYRQGFAVAQDQPWFRQYAMTYLLFAPICLGTTFYSLRA  259

Query  259  AAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVLSIAFD  318
            A   G     +  +V+   VGL+ G A W ++  RFG+ G+ +GSAL S  AA++ IA +
Sbjct  260  AKKMGS----LHVLVVLSSVGLVVGSAFWRKIYRRFGVRGMLLGSALCSTTAALVCIAAE  315

Query  319  LAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINAGLVGM  378
            L+G W ++ A G V  L ++A Q V  A   WI+  A    R +LI FG  ++      +
Sbjct  316  LSGQWYHLWAYGTVFLLATLAAQPVSAASVSWISVFAAEQHRATLIGFGATLLAITFTLL  375

Query  379  GLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPKTG  435
            G  LG+IAQ H  VWPV++VL L+L AA++A R AP   +D R      R+SRP+TG
Sbjct  376  GGVLGMIAQKHATVWPVVVVLALSLVAAFAAVR-APGP-MDDRAH---DRSSRPQTG  427


>gi|289574895|ref|ZP_06455122.1| conserved membrane protein [Mycobacterium tuberculosis K85]
 gi|289539326|gb|EFD43904.1| conserved membrane protein [Mycobacterium tuberculosis K85]
Length=512

 Score =  143 bits (361),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 135/426 (32%), Positives = 212/426 (50%), Gaps = 14/426 (3%)

Query  16   KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
            + +   ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P
Sbjct  14   RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP  72

Query  76   PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV  133
              +    + RH L   +S  A  L   NA     G G  A  L        GVV+ +S V
Sbjct  73   LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV  130

Query  134  AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA  192
            A+ D++++M     R  +LLT+   G+ L T V    +  +   + ++R   LLW  A  
Sbjct  131  AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG  190

Query  193  MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG  250
            +  S  A     P R V    A    L ++ ++G+   R+  W+RRY+   +LF  + LG
Sbjct  191  LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG  250

Query  251  SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA  310
            ++F S+R A   G     +  +V+   +GL+ G  LW ++   F + GL +GSAL++ AA
Sbjct  251  TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFEVRGLLLGSALLNAAA  306

Query  311  AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV  370
            A+L +  +  G W +  A G    L ++A Q+V  A   WI+  A    R +LI  G  +
Sbjct  307  ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL  366

Query  371  INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R  428
                   +G+ALG IAQ H  +WPV++VL L + AA ++ R      V     PQ +  +
Sbjct  367  AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ  426

Query  429  TSRPKT  434
              RP T
Sbjct  427  AYRPAT  432


>gi|340627214|ref|YP_004745666.1| putative integral membrane protein [Mycobacterium canettii CIPT 
140010059]
 gi|340005404|emb|CCC44563.1| putative conserved integral membrane protein [Mycobacterium canettii 
CIPT 140010059]
Length=512

 Score =  135 bits (341),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 137/420 (33%), Positives = 213/420 (51%), Gaps = 14/420 (3%)

Query  22   IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAV  81
            ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P  +   
Sbjct  20   LVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSPLILQRA  78

Query  82   PR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLV  139
             + RH L   +S  A  L   NA     G G VA + L    T   VV+ +S VA+ D++
Sbjct  79   GQLRHLLMAAISATAAALVVCNAAVPWTGVG-VAAVFLATTGTGG-VVTGVSSVAYTDMI  136

Query  140  AAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISA-  197
            ++M     R  +LLT+   G+ L T V    +  +   + ++R   LLW  A  +  S  
Sbjct  137  SSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAGLVCSGI  196

Query  198  AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSI  256
            A     P R V    A    L ++ ++G+   R+  W+RRY+   +LF  + LG++F S+
Sbjct  197  AALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLGTTFFSL  256

Query  257  RVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVLSIA  316
            R A   G     +  +V+   +GL+ G  LW ++   FG+ GL +GSAL++ AAA+L + 
Sbjct  257  RAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAAALLCMV  312

Query  317  FDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINAGLV  376
             +  G W +  A G    L ++A Q+V  A   WI+  A    R +LI  G  +      
Sbjct  313  AESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTLAAVEAT  372

Query  377  GMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--RTSRPKT  434
             +G+ALG IAQ H  +WPV++VL L + AA ++ R      V     PQ +  +  RP T
Sbjct  373  VLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQAYRPAT  432


>gi|258652575|ref|YP_003201731.1| hypothetical protein Namu_2367 [Nakamurella multipartita DSM 
44233]
 gi|258555800|gb|ACV78742.1| hypothetical protein Namu_2367 [Nakamurella multipartita DSM 
44233]
Length=449

 Score =  110 bits (276),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 112/385 (30%), Positives = 187/385 (49%), Gaps = 10/385 (2%)

Query  16   KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
             R  R ++ Q+   S A QL   ++VLP++   +     IAA+++P  T    +G + AP
Sbjct  46   TRNYRALLGQASAVSLANQLTATAVVLPYICIAVGGSPLIAAMLYPIGTFCALLGTLSAP  105

Query  76   PAVAAVPRRHRLFII----VSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAIS  131
               A   RR   FI+    +   AV AG NAL + +  GS   ++ +V   ++G +  ++
Sbjct  106  VLTA---RRSNPFILTVGAIIAAAVTAG-NALGSDL-LGSPIAVVFLVTTAVLGFLGGLA  160

Query  132  FVAFADLVAAMPSGTARARILLTEVGVGAALTAVV-AATLSFVPDQHPLSRNIHLLWTAA  190
             V+  DL++         R+ + +  + A L  VV AA L F      L  +I LLW  A
Sbjct  161  AVSAVDLMSTSLLQAQVGRVSVLQTAISATLVLVVTAAELLFFKHTSALQSHIALLWMGA  220

Query  191  VAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG  250
            +A A++      +     P     P L +++ +G + +R + W R +LLVQ  F S+ LG
Sbjct  221  IAFAMAIPFVLLVVPAPNPSRVRGPTLRQVIPLGVSQVREHRWLRTFLLVQTCFISLTLG  280

Query  251  SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA  310
            ++F S   AA+ G+    +  +V F   GL+    +W R R    + G+ V +  + +AA
Sbjct  281  TAFFSAHAAALHGNVVGHLHLIVAFTATGLIVYGFVWARTRSIATVRGMHVLAGGLIVAA  340

Query  311  AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV  370
            A+ +IA D           G+++AL ++A+Q + TA ++W+ R      R+  I F QLV
Sbjct  341  ALFAIAADTWDLPYEEWLFGVILALAAVASQVISTAKRVWLLRYVGGENRSLTIGFAQLV  400

Query  371  INAGLVGMGLALGLIAQDHDAVWPV  395
             +       L LG++A     VWPV
Sbjct  401  TSLASTLTALVLGVVAHLQGVVWPV  425


>gi|254510863|ref|ZP_05122930.1| hypothetical protein RKLH11_1398 [Rhodobacteraceae bacterium 
KLH11]
 gi|221534574|gb|EEE37562.1| hypothetical protein RKLH11_1398 [Rhodobacteraceae bacterium 
KLH11]
Length=433

 Score = 57.0 bits (136),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 89/425 (21%), Positives = 180/425 (43%), Gaps = 21/425 (4%)

Query  9    SSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGA  68
            S++ G ++R + ++  QS     A  LG+ SIVLPF+   L+  +++A  +     AG  
Sbjct  12   SNSLGPARRNVSVLAGQSILSQVAWTLGSPSIVLPFLAVSLELPMFLAGALVSIRMAGSM  71

Query  69   IGNVVAPPAVAAVPRRHRLFIIVS-----CLAVLAGVNALCATIGKGSVAGILLVVNVTL  123
            I +V     +AA  R+ R   +       CL +   +    A  G  ++  I  V    L
Sbjct  72   ISDVFLAHPIAAQARKKRGIALTELGLGGCLVMALAI----AVTGNVTLTAIAFVAAFFL  127

Query  124  IGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQH-PLSRN  182
            IG++     +  +DL        +R  I   ++G G      +A  +  +  ++ P SR+
Sbjct  128  IGLIEECQALMLSDLFGDHLKSKSRMVIRYLQLGAGGLGAIGLALLIHQITKENPPFSRH  187

Query  183  IHLLWTAAVAMAISAAIC-----RALPHRIVPRVHAAPGLHKL---VYVGWTAIRTNGWY  234
              ++  A+V   + +A+C      ++P     +    P  H+    V      +    W+
Sbjct  188  SAVI-AASVTFFLFSALCILGMAESVPDEAEDQ-KRKPVTHRSLRDVIADILGMFEQAWF  245

Query  235  RRYLLVQVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERF  294
            RRYL++++    V L   F ++  A         + A+++    G L    LW  V  + 
Sbjct  246  RRYLVMRLPLVVVSLSVPFFALIAAEAHHASAKGLTAMIISSASGYLVSAPLWQVVNMKS  305

Query  295  GLVGLFVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARD  354
                +  G+ +V++   VL + F       +V    + + +VS+A   + +A +L+    
Sbjct  306  HRAVMVTGNLMVAVTGIVL-LTFHYLQVDHDVHLHAIALFVVSVATTGISSARKLYFLDV  364

Query  355  AEPGLRTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAP  414
            A    R    +  + +     VG+  AL  +A  H+    ++ ++L+++ +A++  R   
Sbjct  365  APKEQRIQGAAAIKALCRLSAVGLSAALAAVAHMHEVASAIVFIVLVSIWSAFACYRLVL  424

Query  415  AKSVD  419
             + V+
Sbjct  425  PQKVE  429


>gi|289762371|ref|ZP_06521749.1| conserved integral membrane protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289709877|gb|EFD73893.1| conserved integral membrane protein [Mycobacterium tuberculosis 
GM 1503]
Length=433

 Score = 53.1 bits (126),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 24/54 (45%), Positives = 36/54 (67%), Gaps = 1/54 (1%)

Query  22  IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP  75
           ++AQ GFY+A LQLG+ ++VLP + A      W A L++PAF  G  +GN ++P
Sbjct  20  LVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP  72


>gi|95929421|ref|ZP_01312164.1| major facilitator superfamily MFS_1 [Desulfuromonas acetoxidans 
DSM 684]
 gi|95134537|gb|EAT16193.1| major facilitator superfamily MFS_1 [Desulfuromonas acetoxidans 
DSM 684]
Length=436

 Score = 40.4 bits (93),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 73/355 (21%), Positives = 143/355 (41%), Gaps = 17/355 (4%)

Query  21   LIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAA  80
            L++    F   A  L N  IVLP+V+  + A L++   + P   +G  I  VV    V  
Sbjct  39   LMLVSRFFSKLADALSNPKIVLPWVMETVHAPLYLLGFLVPIRESGSLIPQVVIAGYVRR  98

Query  81   VPRRHRLFIIVSCLAVLAGVN-ALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLV  139
            +  R  ++++   + VLA    AL A +G+G+VAG  +++ + +  +      VA  D+ 
Sbjct  99   LTIRKWVWVVGKLVEVLAMTGVALVAWLGQGAVAGWSILLLLVVFSLARGFCSVASKDVT  158

Query  140  AAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISAAI  199
                + +AR +           +T V+      V  +   + ++ +L  AAV +   AA+
Sbjct  159  GKTIAKSARGQTNGWSASSAGLVTLVLGGGFVAVGGEELTAASVAILLGAAVILWSLAAL  218

Query  200  CRALPHRIVPRVHAAPGLHKLVYV-----GWTAIRTNGW---YRRYLLVQVLFGSVVLGS  251
                      R+H  PG  +   +      W  +   G    +R +++ + L     L +
Sbjct  219  A-------FSRLHEFPGEAETAEIHPIKESWQRLALLGRDRPFRHFVITRALLLCSALTA  271

Query  252  SFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAA  311
             ++ I      G QP  +   +L      L    +W R  +      +  G+ +  +   
Sbjct  272  PYYVILAQKAYGTQPQLLGLFILASGSASLVSSPIWGRFSDHSSRRVMMAGAGMTLVLGM  331

Query  312  VLSIAFDLAGAW-PNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLIS  365
            V+     +A  W  ++  +     L+SIA+Q V    + ++    +   RT  ++
Sbjct  332  VVFFVDRVAPQWLASLWLLPGCYFLLSIAHQGVRIGRKTYVVNLGKGNQRTDYVA  386


>gi|71906400|ref|YP_283987.1| flagellar biosynthesis protein FliR [Dechloromonas aromatica 
RCB]
 gi|71846021|gb|AAZ45517.1| Flagellar biosynthesis protein FliR [Dechloromonas aromatica 
RCB]
Length=260

 Score = 38.9 bits (89),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 45/164 (28%), Positives = 72/164 (44%), Gaps = 12/164 (7%)

Query  47   AELDAELWIAALIFPAFTAGGAIGNVVAPP--AVAAVPRRHRLFIIVSCLAVLAGVNALC  104
            A++DA  WI A +FP       +G + A P  + A +PRR RL + +S    +       
Sbjct  7    AQIDA--WIVAFVFPL---ARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPM  61

Query  105  ATIGKGSVAGILLVVNVTLIGV----VSAISFVAFADLVAAMPSGTARARILLTEVGVGA  160
              +  GS+ G+ ++    LIG+     + I F AF D+     S             + +
Sbjct  62   PGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAF-DIAGEFISFQMGLGFATFYDPLNS  120

Query  161  ALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISAAICRALP  204
            + T V+   +S +     LS N HLL+ A +A + SA    A P
Sbjct  121  SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATP  164


>gi|172040263|ref|YP_001799977.1| hypothetical protein cur_0583 [Corynebacterium urealyticum DSM 
7109]
 gi|171851567|emb|CAQ04543.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length=411

 Score = 38.5 bits (88),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 60/259 (24%), Positives = 108/259 (42%), Gaps = 14/259 (5%)

Query  27   GFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAVPRRHR  86
            GF +   Q+ +    LP+++  L A  WIA L+ P   AG  +      P V A  RR  
Sbjct  13   GFQNIGDQIMSAKTTLPWLLQMLAAPTWIAPLLVPIREAGSMLPQAGLRPWVQARSRRLP  72

Query  87   LFIIVSCLAVLAGVNALCATI-GKGSVAGILLVVNVTLIGVVSAISFVAFADLVA-AMPS  144
            + ++ +    L  + A+CA +   G+ AG+L++  + L+    ++  +   D+    MP 
Sbjct  73   ILLLGTLGQALGCIIAMCAALFTSGTTAGLLILFGLALLAAARSLVSLTSKDIQGRTMPK  132

Query  145  GTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISAAICRALP  204
            G  R R+      +  A+T VV   ++ + D         L    A A  +S  + R + 
Sbjct  133  GY-RGRVTGFATTLAGAVTIVVGLVIAALRDNLSPGTFGVLFAAGAGAWVVSFLLFRKIQ  191

Query  205  HRIVPRVHAAPGLHKLVYVG-------WTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSIR  257
               V     A   H +  +        W  +R +  +R ++LV+    S++L S+     
Sbjct  192  EPPVDEGDLAEPPHSVTEMNRAIWDDVWGLMRDDKPFRNFVLVR----SLMLASALSPTF  247

Query  258  VAAVPGDQPDEVVAVVLFV  276
            +  + G     V  + LFV
Sbjct  248  LVTLQGRAGSSVTGLGLFV  266



Lambda     K      H
   0.326    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 891316815802




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40