BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0246
Length=436
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607387|ref|NP_214760.1| integral membrane protein [Mycobact... 842 0.0
gi|15839627|ref|NP_334664.1| hypothetical protein MT0260 [Mycoba... 842 0.0
gi|31791424|ref|NP_853917.1| integral membrane protein [Mycobact... 841 0.0
gi|340625284|ref|YP_004743736.1| putative integral membrane prot... 840 0.0
gi|289572825|ref|ZP_06453052.1| conserved hypothetical protein [... 838 0.0
gi|308394875|ref|ZP_07491835.2| conserved membrane protein [Myco... 817 0.0
gi|183980536|ref|YP_001848827.1| integral membrane protein [Myco... 521 8e-146
gi|167968968|ref|ZP_02551245.1| hypothetical protein MtubH3_1341... 381 1e-103
gi|183983245|ref|YP_001851536.1| hypothetical protein MMAR_3254 ... 162 7e-38
gi|118618854|ref|YP_907186.1| hypothetical protein MUL_3569 [Myc... 148 1e-33
gi|289754317|ref|ZP_06513695.1| integral membrane protein [Mycob... 148 2e-33
gi|289758329|ref|ZP_06517707.1| integral membrane protein [Mycob... 146 5e-33
gi|308232067|ref|ZP_07414798.2| conserved membrane protein [Myco... 146 7e-33
gi|15609346|ref|NP_216725.1| integral membrane protein [Mycobact... 146 8e-33
gi|240168270|ref|ZP_04746929.1| hypothetical protein MkanA1_0309... 144 4e-32
gi|289574895|ref|ZP_06455122.1| conserved membrane protein [Myco... 143 5e-32
gi|340627214|ref|YP_004745666.1| putative integral membrane prot... 135 1e-29
gi|258652575|ref|YP_003201731.1| hypothetical protein Namu_2367 ... 110 3e-22
gi|254510863|ref|ZP_05122930.1| hypothetical protein RKLH11_1398... 57.0 6e-06
gi|289762371|ref|ZP_06521749.1| conserved integral membrane prot... 53.1 9e-05
gi|95929421|ref|ZP_01312164.1| major facilitator superfamily MFS... 40.4 0.60
gi|71906400|ref|YP_283987.1| flagellar biosynthesis protein FliR... 38.9 1.9
gi|172040263|ref|YP_001799977.1| hypothetical protein cur_0583 [... 38.5 2.1
>gi|15607387|ref|NP_214760.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|121636159|ref|YP_976382.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148660011|ref|YP_001281534.1| putative integral membrane protein [Mycobacterium tuberculosis
H37Ra]
66 more sequence titles
Length=436
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/436 (99%), Positives = 436/436 (100%), Gaps = 0/436 (0%)
Query 1 VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
+AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct 1 MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
Query 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
Query 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
Query 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
Query 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
Query 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
Query 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
Query 421 RGLPQVSRTSRPKTGG 436
RGLPQVSRTSRPKTGG
Sbjct 421 RGLPQVSRTSRPKTGG 436
>gi|15839627|ref|NP_334664.1| hypothetical protein MT0260 [Mycobacterium tuberculosis CDC1551]
gi|254233624|ref|ZP_04926950.1| hypothetical protein TBCG_00245 [Mycobacterium tuberculosis C]
gi|13879745|gb|AAK44478.1| hypothetical protein MT0260 [Mycobacterium tuberculosis CDC1551]
gi|124603417|gb|EAY61692.1| hypothetical protein TBCG_00245 [Mycobacterium tuberculosis C]
Length=449
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/436 (100%), Positives = 436/436 (100%), Gaps = 0/436 (0%)
Query 1 VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct 14 VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 73
Query 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct 74 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 133
Query 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct 134 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 193
Query 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct 194 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 253
Query 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct 254 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 313
Query 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct 314 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 373
Query 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct 374 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 433
Query 421 RGLPQVSRTSRPKTGG 436
RGLPQVSRTSRPKTGG
Sbjct 434 RGLPQVSRTSRPKTGG 449
>gi|31791424|ref|NP_853917.1| integral membrane protein [Mycobacterium bovis AF2122/97]
gi|31617009|emb|CAD93116.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
Length=436
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/436 (99%), Positives = 435/436 (99%), Gaps = 0/436 (0%)
Query 1 VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
+AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct 1 MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
Query 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
Query 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
VTLIGVVS ISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct 121 VTLIGVVSVISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
Query 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
Query 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
Query 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
Query 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
Query 421 RGLPQVSRTSRPKTGG 436
RGLPQVSRTSRPKTGG
Sbjct 421 RGLPQVSRTSRPKTGG 436
>gi|340625284|ref|YP_004743736.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|340003474|emb|CCC42594.1| putative conserved integral membrane protein [Mycobacterium canettii
CIPT 140010059]
Length=436
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/436 (99%), Positives = 435/436 (99%), Gaps = 0/436 (0%)
Query 1 VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
+AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct 1 MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
Query 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
Query 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
Query 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTN WYRRYLLV
Sbjct 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNSWYRRYLLV 240
Query 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
Query 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
Query 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV
Sbjct 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
Query 421 RGLPQVSRTSRPKTGG 436
RGLPQVSRTSRPKTGG
Sbjct 421 RGLPQVSRTSRPKTGG 436
>gi|289572825|ref|ZP_06453052.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289537256|gb|EFD41834.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=562
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/436 (99%), Positives = 435/436 (99%), Gaps = 0/436 (0%)
Query 1 VAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
+AKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF
Sbjct 1 MAKTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIF 60
Query 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN
Sbjct 61 PAFTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVN 120
Query 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS
Sbjct 121 VTLIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLS 180
Query 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV
Sbjct 181 RNIHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLV 240
Query 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF
Sbjct 241 QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLF 300
Query 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR
Sbjct 301 VGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLR 360
Query 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDV 420
TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSA RFAPAKSVDV
Sbjct 361 TSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSARRFAPAKSVDV 420
Query 421 RGLPQVSRTSRPKTGG 436
RGLPQVSRTSRPKTGG
Sbjct 421 RGLPQVSRTSRPKTGG 436
>gi|308394875|ref|ZP_07491835.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|308367592|gb|EFP56443.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717237|gb|EGB26446.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=423
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/423 (100%), Positives = 423/423 (100%), Gaps = 0/423 (0%)
Query 14 MSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVV 73
MSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVV
Sbjct 1 MSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVV 60
Query 74 APPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 133
APPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV
Sbjct 61 APPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 120
Query 134 AFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAM 193
AFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAM
Sbjct 121 AFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAM 180
Query 194 AISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSF 253
AISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSF
Sbjct 181 AISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSF 240
Query 254 HSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVL 313
HSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVL
Sbjct 241 HSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVL 300
Query 314 SIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINA 373
SIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINA
Sbjct 301 SIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINA 360
Query 374 GLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPK 433
GLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPK
Sbjct 361 GLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPK 420
Query 434 TGG 436
TGG
Sbjct 421 TGG 423
>gi|183980536|ref|YP_001848827.1| integral membrane protein [Mycobacterium marinum M]
gi|183173862|gb|ACC38972.1| conserved integral membrane protein [Mycobacterium marinum M]
Length=416
Score = 521 bits (1342), Expect = 8e-146, Method: Compositional matrix adjust.
Identities = 295/414 (72%), Positives = 338/414 (82%), Gaps = 0/414 (0%)
Query 3 KTSHRVSSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPA 62
+TS DG SKR+L L+I QSGFY ALQLGNV IVLPFVVAEL AELW+AALIFPA
Sbjct 3 ETSRPEGRIDGPSKRVLWLVITQSGFYRTALQLGNVPIVLPFVVAELHAELWMAALIFPA 62
Query 63 FTAGGAIGNVVAPPAVAAVPRRHRLFIIVSCLAVLAGVNALCATIGKGSVAGILLVVNVT 122
FTAG AIGN++AP +AAVPRR RL IIV L VLA VNA+ AT+G G+ AG L +VNV
Sbjct 63 FTAGAAIGNMLAPAVLAAVPRRRRLVIIVFGLTVLAAVNAMGATMGDGNEAGSLFLVNVL 122
Query 123 LIGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRN 182
IG VSA SFVAFADLVAAMPSGT RA++LLTE GVGAALTA+V LSFVP + L+ N
Sbjct 123 FIGAVSAFSFVAFADLVAAMPSGTDRAQVLLTEAGVGAALTAIVTVALSFVPHEDHLTNN 182
Query 183 IHLLWTAAVAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQV 242
I LLWTA AMAIS IC LP RIVP VH APGL+K+V+VG A+R WYRRYL VQ+
Sbjct 183 IRLLWTATAAMAISGLICLGLPQRIVPPVHKAPGLNKVVHVGLAALRRESWYRRYLAVQL 242
Query 243 LFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVG 302
LFGSVVLGSSF+SIRVAA+PGD+ D VV +VLFVCVGL+GGI +WNR+RERFGLVGLF G
Sbjct 243 LFGSVVLGSSFYSIRVAAIPGDEHDNVVVLVLFVCVGLVGGIRVWNRIRERFGLVGLFAG 302
Query 303 SALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTS 362
SA++SIAAAV++IAF LAG+WPN+VAI LVIAL SIANQSVFTAGQLWIA +A+P LR S
Sbjct 303 SAILSIAAAVIAIAFQLAGSWPNLVAISLVIALASIANQSVFTAGQLWIAHNADPTLRIS 362
Query 363 LISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAK 416
LI+FG+LVI+AGLVG+ LG++AQ HD VWPVMIVLLLN+ AAYSA R APA
Sbjct 363 LIAFGRLVISAGLVGLSSLLGILAQFHDVVWPVMIVLLLNVAAAYSAKRLAPAD 416
>gi|167968968|ref|ZP_02551245.1| hypothetical protein MtubH3_13417 [Mycobacterium tuberculosis
H37Ra]
Length=197
Score = 381 bits (978), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 196/197 (99%), Positives = 197/197 (100%), Gaps = 0/197 (0%)
Query 240 VQVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGL 299
+QVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGL
Sbjct 1 MQVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGL 60
Query 300 FVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGL 359
FVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGL
Sbjct 61 FVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGL 120
Query 360 RTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVD 419
RTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVD
Sbjct 121 RTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVD 180
Query 420 VRGLPQVSRTSRPKTGG 436
VRGLPQVSRTSRPKTGG
Sbjct 181 VRGLPQVSRTSRPKTGG 197
>gi|183983245|ref|YP_001851536.1| hypothetical protein MMAR_3254 [Mycobacterium marinum M]
gi|183176571|gb|ACC41681.1| conserved hypothetical integral membrane protein [Mycobacterium
marinum M]
Length=498
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 140/430 (33%), Positives = 212/430 (50%), Gaps = 29/430 (6%)
Query 22 IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAV 81
++ Q FYSA +Q+G+ ++VLP + A W+A L+FPAF+ G +GN V+P +
Sbjct 18 LVTQGSFYSAGMQMGSGAVVLPVICAH-QGLTWVAGLLFPAFSIGAILGNSVSPLILQRF 76
Query 82 PR-RHRLFIIVS-CLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLV 139
+ RH L +S A L NA A G++ + V T GVV+ +S VA+ D++
Sbjct 77 GQYRHLLMAAISASAATLILANA--AVPWTGALVAAVFFVTATASGVVAGVSGVAYTDMI 134
Query 140 AAMPSGTARARILLTEVGVGAALTAVVAATLSFVP---DQHPLSRNIHLLWTAAVAMAIS 196
+ S R +LLT+ VG+ L V TL VP ++R LLW A +M ++
Sbjct 135 SNKLSVLRRGELLLTQGAVGSLLATGV--TLVIVPRLAHGDEMARYHDLLWLGAASMIVA 192
Query 197 A-AICRALPHRIVPRVHAAPG----LHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGS 251
A P R +AP L + G+ R W+RRY +LF + LG+
Sbjct 193 GVAALFVGPMR---SASSAPTVRLPLRDIYRQGFEIARREPWFRRYATTYLLFAPISLGT 249
Query 252 SFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAA 311
+F S+R A G + +V+ + L+ G LW V RFG+ G+ +GS+L SIAAA
Sbjct 250 TFFSLRAAQSSGS----LHVLVILSSIALVIGSLLWRAVNRRFGVRGMLLGSSLFSIAAA 305
Query 312 VLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVI 371
++ I +L G W + A G L ++A Q+V A WI+ A R +LI FG +
Sbjct 306 LVCIVAELCGQWTQMWAYGTAFLLATVAAQTVVAASISWISMFAPEQHRATLICFGATLA 365
Query 372 NAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQ------ 425
+G LG +AQ H + PV++ L L + AA ++ R AP S + Q
Sbjct 366 AVVSTLLGAVLGELAQRHATIGPVLVSLTLAIIAAVASLR-APGLSQTIEAQSQLVEKAP 424
Query 426 VSRTSRPKTG 435
+ R SR + G
Sbjct 425 MRRLSRARRG 434
>gi|118618854|ref|YP_907186.1| hypothetical protein MUL_3569 [Mycobacterium ulcerans Agy99]
gi|118570964|gb|ABL05715.1| conserved hypothetical integral membrane protein [Mycobacterium
ulcerans Agy99]
Length=470
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 134/419 (32%), Positives = 203/419 (49%), Gaps = 29/419 (6%)
Query 33 LQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAVPR-RHRLFIIV 91
+Q+G+ ++VLP + A W+A L+FPAF+ G +GN V+P + + RH L +
Sbjct 1 MQMGSGAVVLPVICAH-QGLTWVAGLLFPAFSIGAILGNSVSPLILQRFGQYRHLLMAAI 59
Query 92 S-CLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLVAAMPSGTARAR 150
S A L NA A G++ + V T GVV+ +S VA+ D+V+ S R
Sbjct 60 SASAATLILANA--AVPWTGALVAAVFFVTATASGVVAGVSGVAYTDMVSNKLSVLRRGE 117
Query 151 ILLTEVGVGAALTAVVAATLSFVP---DQHPLSRNIHLLWTAAVAMAISA-AICRALPHR 206
+LLT+ G+ L V TL VP ++R LLW A +M ++ A P R
Sbjct 118 LLLTQGAFGSLLATGV--TLVIVPRLAHGDEMARYHDLLWLGAASMIVAGVAALFVGPMR 175
Query 207 IVPRVHAAPG----LHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSIRVAAVP 262
+AP L + G+ R W+RRY +LF + LG++F S+R A
Sbjct 176 ---SASSAPTVRLPLRDIYRQGFEIARREPWFRRYATTYLLFAPISLGTTFFSLRAAQSS 232
Query 263 GDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVLSIAFDLAGA 322
G + +V+ + + G LW V RFG+ G+ +GS+L SIAAA++ I +L G
Sbjct 233 GS----LHVLVILSSIAFVIGSLLWRAVNRRFGVRGMLLGSSLFSIAAALVCIVAELCGQ 288
Query 323 WPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINAGLVGMGLAL 382
W + A G L ++A Q+V A WI+ A R +LI FG + +G L
Sbjct 289 WTQMWAYGTAFLLATVAAQTVVAASISWISMFAPEQHRATLICFGATLAAVVSTLLGAVL 348
Query 383 GLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQ------VSRTSRPKTG 435
G +AQ H + PV++ L L + AA ++ R AP S + Q + R SR + G
Sbjct 349 GELAQRHATIGPVLVSLTLAIIAAVASLR-APGLSQTIEAQSQLVDKAPMRRLSRARRG 406
>gi|289754317|ref|ZP_06513695.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
gi|289694904|gb|EFD62333.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
Length=482
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)
Query 16 KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
+ + ++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P
Sbjct 29 RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP 87
Query 76 PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 133
+ + RH L +S A L NA G G A L GVV+ +S V
Sbjct 88 LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV 145
Query 134 AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA 192
A+ D++++M R +LLT+ G+ L T V + + + ++R LLW A
Sbjct 146 AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG 205
Query 193 MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG 250
+ S A P R V A L ++ ++G+ R+ W+RRY+ +LF + LG
Sbjct 206 LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG 265
Query 251 SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA 310
++F S+R A G + +V+ +GL+ G LW ++ FG+ GL +GSAL++ AA
Sbjct 266 TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA 321
Query 311 AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV 370
A+L + + G W + A G L ++A Q+V A WI+ A R +LI G +
Sbjct 322 ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL 381
Query 371 INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R 428
+G+ALG IAQ H +WPV++VL L + AA ++ R V PQ + +
Sbjct 382 AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ 441
Query 429 TSRPKT 434
RP T
Sbjct 442 AYRPAT 447
>gi|289758329|ref|ZP_06517707.1| integral membrane protein [Mycobacterium tuberculosis T85]
gi|289713893|gb|EFD77905.1| integral membrane protein [Mycobacterium tuberculosis T85]
Length=512
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)
Query 16 KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
+ + ++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P
Sbjct 14 RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP 72
Query 76 PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 133
+ + RH L +S A L NA G G A L GVV+ +S V
Sbjct 73 LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV 130
Query 134 AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA 192
A+ D++++M R +LLT+ G+ L T V + + + ++R LLW A
Sbjct 131 AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG 190
Query 193 MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG 250
+ S A P R V A L ++ ++G+ R+ W+RRY+ +LF + LG
Sbjct 191 LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG 250
Query 251 SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA 310
++F S+R A G + +V+ +GL+ G LW ++ FG+ GL +GSAL++ AA
Sbjct 251 TTFFSLRAAQSSGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA 306
Query 311 AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV 370
A+L + + G W + A G L ++A Q+V A WI+ A R +LI G +
Sbjct 307 ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL 366
Query 371 INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R 428
+G+ALG IAQ H +WPV++VL L + AA ++ R V PQ + +
Sbjct 367 AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ 426
Query 429 TSRPKT 434
RP T
Sbjct 427 AYRPAT 432
>gi|308232067|ref|ZP_07414798.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308369656|ref|ZP_07418575.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308370946|ref|ZP_07423307.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
22 more sequence titles
Length=503
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)
Query 16 KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
+ + ++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P
Sbjct 5 RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP 63
Query 76 PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 133
+ + RH L +S A L NA G G A L GVV+ +S V
Sbjct 64 LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV 121
Query 134 AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA 192
A+ D++++M R +LLT+ G+ L T V + + + ++R LLW A
Sbjct 122 AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG 181
Query 193 MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG 250
+ S A P R V A L ++ ++G+ R+ W+RRY+ +LF + LG
Sbjct 182 LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG 241
Query 251 SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA 310
++F S+R A G + +V+ +GL+ G LW ++ FG+ GL +GSAL++ AA
Sbjct 242 TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA 297
Query 311 AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV 370
A+L + + G W + A G L ++A Q+V A WI+ A R +LI G +
Sbjct 298 ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL 357
Query 371 INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R 428
+G+ALG IAQ H +WPV++VL L + AA ++ R V PQ + +
Sbjct 358 AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ 417
Query 429 TSRPKT 434
RP T
Sbjct 418 AYRPAT 423
>gi|15609346|ref|NP_216725.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841700|ref|NP_336737.1| hypothetical protein MT2265 [Mycobacterium tuberculosis CDC1551]
gi|31793388|ref|NP_855881.1| integral membrane protein [Mycobacterium bovis AF2122/97]
43 more sequence titles
Length=512
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 136/426 (32%), Positives = 213/426 (50%), Gaps = 14/426 (3%)
Query 16 KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
+ + ++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P
Sbjct 14 RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP 72
Query 76 PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 133
+ + RH L +S A L NA G G A L GVV+ +S V
Sbjct 73 LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV 130
Query 134 AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA 192
A+ D++++M R +LLT+ G+ L T V + + + ++R LLW A
Sbjct 131 AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG 190
Query 193 MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG 250
+ S A P R V A L ++ ++G+ R+ W+RRY+ +LF + LG
Sbjct 191 LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG 250
Query 251 SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA 310
++F S+R A G + +V+ +GL+ G LW ++ FG+ GL +GSAL++ AA
Sbjct 251 TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAA 306
Query 311 AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV 370
A+L + + G W + A G L ++A Q+V A WI+ A R +LI G +
Sbjct 307 ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL 366
Query 371 INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R 428
+G+ALG IAQ H +WPV++VL L + AA ++ R V PQ + +
Sbjct 367 AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ 426
Query 429 TSRPKT 434
RP T
Sbjct 427 AYRPAT 432
>gi|240168270|ref|ZP_04746929.1| hypothetical protein MkanA1_03097 [Mycobacterium kansasii ATCC
12478]
Length=468
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 139/417 (34%), Positives = 219/417 (53%), Gaps = 15/417 (3%)
Query 22 IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAV 81
++ Q FY+ +QL N ++VLPF+ A W A ++FPA++ G +GN A PA+
Sbjct 23 LVTQGTFYTTGMQLSNSAVVLPFICAH-QGITWAAGMLFPAYSIGLIMGNS-ASPAILQR 80
Query 82 PRRHRLFIIVSCLAVLAGVNALCATIG-KGSVAGILLVVNVTLIGVVSAISFVAFADLVA 140
R R ++ + A +A + A I G A + ++ GVV A++ VA+ D+V+
Sbjct 81 AGRMRHVLLSATAAAVAALLIWDAVIPWTGVYAAAVFLLTTAAAGVVIAVATVAYTDMVS 140
Query 141 AMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVAM-AISAA 198
+ R + LT+ G+ L T V+ + ++ LLW A+A+ A S A
Sbjct 141 SKLPARRRGELFLTQGAAGSTLATGVMLLIAPMLASGDQIAHYRDLLWLGALALIASSVA 200
Query 199 ICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSIRV 258
P R A P L ++ G+ + W+R+Y + +LF + LG++F+S+R
Sbjct 201 ALLVGPMRSA-STTARPPLREIYRQGFAVAQDQPWFRQYAMTYLLFAPICLGTTFYSLRA 259
Query 259 AAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVLSIAFD 318
A G + +V+ VGL+ G A W ++ RFG+ G+ +GSAL S AA++ IA +
Sbjct 260 AKKMGS----LHVLVVLSSVGLVVGSAFWRKIYRRFGVRGMLLGSALCSTTAALVCIAAE 315
Query 319 LAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINAGLVGM 378
L+G W ++ A G V L ++A Q V A WI+ A R +LI FG ++ +
Sbjct 316 LSGQWYHLWAYGTVFLLATLAAQPVSAASVSWISVFAAEQHRATLIGFGATLLAITFTLL 375
Query 379 GLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVSRTSRPKTG 435
G LG+IAQ H VWPV++VL L+L AA++A R AP +D R R+SRP+TG
Sbjct 376 GGVLGMIAQKHATVWPVVVVLALSLVAAFAAVR-APGP-MDDRAH---DRSSRPQTG 427
>gi|289574895|ref|ZP_06455122.1| conserved membrane protein [Mycobacterium tuberculosis K85]
gi|289539326|gb|EFD43904.1| conserved membrane protein [Mycobacterium tuberculosis K85]
Length=512
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 135/426 (32%), Positives = 212/426 (50%), Gaps = 14/426 (3%)
Query 16 KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
+ + ++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P
Sbjct 14 RNLFGRLVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP 72
Query 76 PAVAAVPR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFV 133
+ + RH L +S A L NA G G A L GVV+ +S V
Sbjct 73 LILQRAGQLRHLLMAAISATAAALVVCNAAVPWTGVGVAAVFLATTGAG--GVVTGVSSV 130
Query 134 AFADLVAAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVA 192
A+ D++++M R +LLT+ G+ L T V + + + ++R LLW A
Sbjct 131 AYTDMISSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAG 190
Query 193 MAISA-AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG 250
+ S A P R V A L ++ ++G+ R+ W+RRY+ +LF + LG
Sbjct 191 LVCSGIAALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLG 250
Query 251 SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA 310
++F S+R A G + +V+ +GL+ G LW ++ F + GL +GSAL++ AA
Sbjct 251 TTFFSLRAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFEVRGLLLGSALLNAAA 306
Query 311 AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV 370
A+L + + G W + A G L ++A Q+V A WI+ A R +LI G +
Sbjct 307 ALLCMVAESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTL 366
Query 371 INAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--R 428
+G+ALG IAQ H +WPV++VL L + AA ++ R V PQ + +
Sbjct 367 AAVEATVLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQ 426
Query 429 TSRPKT 434
RP T
Sbjct 427 AYRPAT 432
>gi|340627214|ref|YP_004745666.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|340005404|emb|CCC44563.1| putative conserved integral membrane protein [Mycobacterium canettii
CIPT 140010059]
Length=512
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 137/420 (33%), Positives = 213/420 (51%), Gaps = 14/420 (3%)
Query 22 IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAV 81
++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P +
Sbjct 20 LVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSPLILQRA 78
Query 82 PR-RHRLFIIVSCLAV-LAGVNALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLV 139
+ RH L +S A L NA G G VA + L T VV+ +S VA+ D++
Sbjct 79 GQLRHLLMAAISATAAALVVCNAAVPWTGVG-VAAVFLATTGTGG-VVTGVSSVAYTDMI 136
Query 140 AAMPSGTARARILLTEVGVGAAL-TAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISA- 197
++M R +LLT+ G+ L T V + + + ++R LLW A + S
Sbjct 137 SSMLPAVRRGELLLTQGAAGSVLATGVTLVIVPMLAHGNEMARYHDLLWLGAAGLVCSGI 196
Query 198 AICRALPHRIVPRVHAAP-GLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSI 256
A P R V A L ++ ++G+ R+ W+RRY+ +LF + LG++F S+
Sbjct 197 AALFVGPMRSVSVTTATRMPLREIYWMGFAIARSQPWFRRYMTTYLLFVPISLGTTFFSL 256
Query 257 RVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAAVLSIA 316
R A G + +V+ +GL+ G LW ++ FG+ GL +GSAL++ AAA+L +
Sbjct 257 RAAQSNGS----LHVLVILSSIGLVVGSMLWRQINRLFGVRGLLLGSALLNAAAALLCMV 312
Query 317 FDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLVINAGLV 376
+ G W + A G L ++A Q+V A WI+ A R +LI G +
Sbjct 313 AESCGQWVHAWAYGTAFLLATVAAQTVVAASISWISVLAPERYRATLICVGSTLAAVEAT 372
Query 377 GMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAPAKSVDVRGLPQVS--RTSRPKT 434
+G+ALG IAQ H +WPV++VL L + AA ++ R V PQ + + RP T
Sbjct 373 VLGVALGGIAQKHATIWPVVVVLTLAVIAAVASLRAPTRIGVTADTSPQAATLQAYRPAT 432
>gi|258652575|ref|YP_003201731.1| hypothetical protein Namu_2367 [Nakamurella multipartita DSM
44233]
gi|258555800|gb|ACV78742.1| hypothetical protein Namu_2367 [Nakamurella multipartita DSM
44233]
Length=449
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/385 (30%), Positives = 187/385 (49%), Gaps = 10/385 (2%)
Query 16 KRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
R R ++ Q+ S A QL ++VLP++ + IAA+++P T +G + AP
Sbjct 46 TRNYRALLGQASAVSLANQLTATAVVLPYICIAVGGSPLIAAMLYPIGTFCALLGTLSAP 105
Query 76 PAVAAVPRRHRLFII----VSCLAVLAGVNALCATIGKGSVAGILLVVNVTLIGVVSAIS 131
A RR FI+ + AV AG NAL + + GS ++ +V ++G + ++
Sbjct 106 VLTA---RRSNPFILTVGAIIAAAVTAG-NALGSDL-LGSPIAVVFLVTTAVLGFLGGLA 160
Query 132 FVAFADLVAAMPSGTARARILLTEVGVGAALTAVV-AATLSFVPDQHPLSRNIHLLWTAA 190
V+ DL++ R+ + + + A L VV AA L F L +I LLW A
Sbjct 161 AVSAVDLMSTSLLQAQVGRVSVLQTAISATLVLVVTAAELLFFKHTSALQSHIALLWMGA 220
Query 191 VAMAISAAICRALPHRIVPRVHAAPGLHKLVYVGWTAIRTNGWYRRYLLVQVLFGSVVLG 250
+A A++ + P P L +++ +G + +R + W R +LLVQ F S+ LG
Sbjct 221 IAFAMAIPFVLLVVPAPNPSRVRGPTLRQVIPLGVSQVREHRWLRTFLLVQTCFISLTLG 280
Query 251 SSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAA 310
++F S AA+ G+ + +V F GL+ +W R R + G+ V + + +AA
Sbjct 281 TAFFSAHAAALHGNVVGHLHLIVAFTATGLIVYGFVWARTRSIATVRGMHVLAGGLIVAA 340
Query 311 AVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLISFGQLV 370
A+ +IA D G+++AL ++A+Q + TA ++W+ R R+ I F QLV
Sbjct 341 ALFAIAADTWDLPYEEWLFGVILALAAVASQVISTAKRVWLLRYVGGENRSLTIGFAQLV 400
Query 371 INAGLVGMGLALGLIAQDHDAVWPV 395
+ L LG++A VWPV
Sbjct 401 TSLASTLTALVLGVVAHLQGVVWPV 425
>gi|254510863|ref|ZP_05122930.1| hypothetical protein RKLH11_1398 [Rhodobacteraceae bacterium
KLH11]
gi|221534574|gb|EEE37562.1| hypothetical protein RKLH11_1398 [Rhodobacteraceae bacterium
KLH11]
Length=433
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/425 (21%), Positives = 180/425 (43%), Gaps = 21/425 (4%)
Query 9 SSADGMSKRILRLIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGA 68
S++ G ++R + ++ QS A LG+ SIVLPF+ L+ +++A + AG
Sbjct 12 SNSLGPARRNVSVLAGQSILSQVAWTLGSPSIVLPFLAVSLELPMFLAGALVSIRMAGSM 71
Query 69 IGNVVAPPAVAAVPRRHRLFIIVS-----CLAVLAGVNALCATIGKGSVAGILLVVNVTL 123
I +V +AA R+ R + CL + + A G ++ I V L
Sbjct 72 ISDVFLAHPIAAQARKKRGIALTELGLGGCLVMALAI----AVTGNVTLTAIAFVAAFFL 127
Query 124 IGVVSAISFVAFADLVAAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQH-PLSRN 182
IG++ + +DL +R I ++G G +A + + ++ P SR+
Sbjct 128 IGLIEECQALMLSDLFGDHLKSKSRMVIRYLQLGAGGLGAIGLALLIHQITKENPPFSRH 187
Query 183 IHLLWTAAVAMAISAAIC-----RALPHRIVPRVHAAPGLHKL---VYVGWTAIRTNGWY 234
++ A+V + +A+C ++P + P H+ V + W+
Sbjct 188 SAVI-AASVTFFLFSALCILGMAESVPDEAEDQ-KRKPVTHRSLRDVIADILGMFEQAWF 245
Query 235 RRYLLVQVLFGSVVLGSSFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERF 294
RRYL++++ V L F ++ A + A+++ G L LW V +
Sbjct 246 RRYLVMRLPLVVVSLSVPFFALIAAEAHHASAKGLTAMIISSASGYLVSAPLWQVVNMKS 305
Query 295 GLVGLFVGSALVSIAAAVLSIAFDLAGAWPNVVAIGLVIALVSIANQSVFTAGQLWIARD 354
+ G+ +V++ VL + F +V + + +VS+A + +A +L+
Sbjct 306 HRAVMVTGNLMVAVTGIVL-LTFHYLQVDHDVHLHAIALFVVSVATTGISSARKLYFLDV 364
Query 355 AEPGLRTSLISFGQLVINAGLVGMGLALGLIAQDHDAVWPVMIVLLLNLTAAYSATRFAP 414
A R + + + VG+ AL +A H+ ++ ++L+++ +A++ R
Sbjct 365 APKEQRIQGAAAIKALCRLSAVGLSAALAAVAHMHEVASAIVFIVLVSIWSAFACYRLVL 424
Query 415 AKSVD 419
+ V+
Sbjct 425 PQKVE 429
>gi|289762371|ref|ZP_06521749.1| conserved integral membrane protein [Mycobacterium tuberculosis
GM 1503]
gi|289709877|gb|EFD73893.1| conserved integral membrane protein [Mycobacterium tuberculosis
GM 1503]
Length=433
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/54 (45%), Positives = 36/54 (67%), Gaps = 1/54 (1%)
Query 22 IIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAP 75
++AQ GFY+A LQLG+ ++VLP + A W A L++PAF G +GN ++P
Sbjct 20 LVAQGGFYTAGLQLGSGAVVLPVICAH-QGLTWAAGLLYPAFCIGAILGNSLSP 72
>gi|95929421|ref|ZP_01312164.1| major facilitator superfamily MFS_1 [Desulfuromonas acetoxidans
DSM 684]
gi|95134537|gb|EAT16193.1| major facilitator superfamily MFS_1 [Desulfuromonas acetoxidans
DSM 684]
Length=436
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 73/355 (21%), Positives = 143/355 (41%), Gaps = 17/355 (4%)
Query 21 LIIAQSGFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAA 80
L++ F A L N IVLP+V+ + A L++ + P +G I VV V
Sbjct 39 LMLVSRFFSKLADALSNPKIVLPWVMETVHAPLYLLGFLVPIRESGSLIPQVVIAGYVRR 98
Query 81 VPRRHRLFIIVSCLAVLAGVN-ALCATIGKGSVAGILLVVNVTLIGVVSAISFVAFADLV 139
+ R ++++ + VLA AL A +G+G+VAG +++ + + + VA D+
Sbjct 99 LTIRKWVWVVGKLVEVLAMTGVALVAWLGQGAVAGWSILLLLVVFSLARGFCSVASKDVT 158
Query 140 AAMPSGTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISAAI 199
+ +AR + +T V+ V + + ++ +L AAV + AA+
Sbjct 159 GKTIAKSARGQTNGWSASSAGLVTLVLGGGFVAVGGEELTAASVAILLGAAVILWSLAAL 218
Query 200 CRALPHRIVPRVHAAPGLHKLVYV-----GWTAIRTNGW---YRRYLLVQVLFGSVVLGS 251
R+H PG + + W + G +R +++ + L L +
Sbjct 219 A-------FSRLHEFPGEAETAEIHPIKESWQRLALLGRDRPFRHFVITRALLLCSALTA 271
Query 252 SFHSIRVAAVPGDQPDEVVAVVLFVCVGLLGGIALWNRVRERFGLVGLFVGSALVSIAAA 311
++ I G QP + +L L +W R + + G+ + +
Sbjct 272 PYYVILAQKAYGTQPQLLGLFILASGSASLVSSPIWGRFSDHSSRRVMMAGAGMTLVLGM 331
Query 312 VLSIAFDLAGAW-PNVVAIGLVIALVSIANQSVFTAGQLWIARDAEPGLRTSLIS 365
V+ +A W ++ + L+SIA+Q V + ++ + RT ++
Sbjct 332 VVFFVDRVAPQWLASLWLLPGCYFLLSIAHQGVRIGRKTYVVNLGKGNQRTDYVA 386
>gi|71906400|ref|YP_283987.1| flagellar biosynthesis protein FliR [Dechloromonas aromatica
RCB]
gi|71846021|gb|AAZ45517.1| Flagellar biosynthesis protein FliR [Dechloromonas aromatica
RCB]
Length=260
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/164 (28%), Positives = 72/164 (44%), Gaps = 12/164 (7%)
Query 47 AELDAELWIAALIFPAFTAGGAIGNVVAPP--AVAAVPRRHRLFIIVSCLAVLAGVNALC 104
A++DA WI A +FP +G + A P + A +PRR RL + +S +
Sbjct 7 AQIDA--WIVAFVFPL---ARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPM 61
Query 105 ATIGKGSVAGILLVVNVTLIGV----VSAISFVAFADLVAAMPSGTARARILLTEVGVGA 160
+ GS+ G+ ++ LIG+ + I F AF D+ S + +
Sbjct 62 PGVQPGSLPGLWILAQQMLIGIGMGFAAKIVFTAF-DIAGEFISFQMGLGFATFYDPLNS 120
Query 161 ALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISAAICRALP 204
+ T V+ +S + LS N HLL+ A +A + SA A P
Sbjct 121 SQTPVITEFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATP 164
>gi|172040263|ref|YP_001799977.1| hypothetical protein cur_0583 [Corynebacterium urealyticum DSM
7109]
gi|171851567|emb|CAQ04543.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length=411
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 60/259 (24%), Positives = 108/259 (42%), Gaps = 14/259 (5%)
Query 27 GFYSAALQLGNVSIVLPFVVAELDAELWIAALIFPAFTAGGAIGNVVAPPAVAAVPRRHR 86
GF + Q+ + LP+++ L A WIA L+ P AG + P V A RR
Sbjct 13 GFQNIGDQIMSAKTTLPWLLQMLAAPTWIAPLLVPIREAGSMLPQAGLRPWVQARSRRLP 72
Query 87 LFIIVSCLAVLAGVNALCATI-GKGSVAGILLVVNVTLIGVVSAISFVAFADLVA-AMPS 144
+ ++ + L + A+CA + G+ AG+L++ + L+ ++ + D+ MP
Sbjct 73 ILLLGTLGQALGCIIAMCAALFTSGTTAGLLILFGLALLAAARSLVSLTSKDIQGRTMPK 132
Query 145 GTARARILLTEVGVGAALTAVVAATLSFVPDQHPLSRNIHLLWTAAVAMAISAAICRALP 204
G R R+ + A+T VV ++ + D L A A +S + R +
Sbjct 133 GY-RGRVTGFATTLAGAVTIVVGLVIAALRDNLSPGTFGVLFAAGAGAWVVSFLLFRKIQ 191
Query 205 HRIVPRVHAAPGLHKLVYVG-------WTAIRTNGWYRRYLLVQVLFGSVVLGSSFHSIR 257
V A H + + W +R + +R ++LV+ S++L S+
Sbjct 192 EPPVDEGDLAEPPHSVTEMNRAIWDDVWGLMRDDKPFRNFVLVR----SLMLASALSPTF 247
Query 258 VAAVPGDQPDEVVAVVLFV 276
+ + G V + LFV
Sbjct 248 LVTLQGRAGSSVTGLGLFV 266
Lambda K H
0.326 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 891316815802
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40