BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0249c Length=273 Score E Sequences producing significant alignments: (Bits) Value gi|15607390|ref|NP_214763.1| succinate dehydrogenase membrane an... 560 1e-157 gi|240168473|ref|ZP_04747132.1| succinate dehydrogenase (membran... 508 3e-142 gi|183980540|ref|YP_001848831.1| succinate dehydrogenase (membra... 508 5e-142 gi|118616891|ref|YP_905223.1| succinate dehydrogenase (membrane ... 506 1e-141 gi|118468474|ref|YP_884832.1| integral membrane protein [Mycobac... 461 4e-128 gi|169631496|ref|YP_001705145.1| putative succinate dehydrogenas... 435 4e-120 gi|300784259|ref|YP_003764550.1| hypothetical protein AMED_2351 ... 426 2e-117 gi|120401313|ref|YP_951142.1| putative succinate dehydrogenase m... 418 5e-115 gi|108797234|ref|YP_637431.1| putative succinate dehydrogenase m... 416 2e-114 gi|302525501|ref|ZP_07277843.1| integral membrane protein [Strep... 412 4e-113 gi|54027575|ref|YP_121817.1| hypothetical protein nfa56010 [Noca... 408 5e-112 gi|296167531|ref|ZP_06849883.1| integral membrane protein [Mycob... 401 6e-110 gi|325674440|ref|ZP_08154128.1| integral membrane protein [Rhodo... 395 3e-108 gi|312140083|ref|YP_004007419.1| succinate dehydrogenase membran... 394 7e-108 gi|226360191|ref|YP_002777969.1| hypothetical protein ROP_07770 ... 393 2e-107 gi|111018063|ref|YP_701035.1| succinate dehydrogenase [Rhodococc... 389 3e-106 gi|118465127|ref|YP_884029.1| integral membrane protein [Mycobac... 381 7e-104 gi|41409797|ref|NP_962633.1| hypothetical protein MAP3699c [Myco... 380 1e-103 gi|254777347|ref|ZP_05218863.1| hypothetical protein MaviaA2_221... 378 4e-103 gi|145220997|ref|YP_001131675.1| putative succinate dehydrogenas... 373 1e-101 gi|257056752|ref|YP_003134584.1| hypothetical protein Svir_27760... 364 8e-99 gi|333988876|ref|YP_004521490.1| succinate dehydrogenase (membra... 362 3e-98 gi|330470011|ref|YP_004407754.1| succinate dehydrogenase (membra... 355 5e-96 gi|302869778|ref|YP_003838415.1| putative succinate dehydrogenas... 352 3e-95 gi|238060960|ref|ZP_04605669.1| succinate dehydrogenase [Micromo... 352 4e-95 gi|269957000|ref|YP_003326789.1| putative integral membrane prot... 351 5e-95 gi|343927513|ref|ZP_08766984.1| hypothetical protein GOALK_094_0... 349 2e-94 gi|342859275|ref|ZP_08715929.1| integral membrane protein [Mycob... 332 3e-89 gi|254820420|ref|ZP_05225421.1| hypothetical protein MintA_10846... 330 2e-88 gi|229822044|ref|YP_002883570.1| integral membrane protein [Beut... 327 8e-88 gi|334337181|ref|YP_004542333.1| integral membrane protein [Isop... 327 1e-87 gi|297562854|ref|YP_003681828.1| hypothetical protein Ndas_3925 ... 320 1e-85 gi|269125368|ref|YP_003298738.1| hypothetical protein Tcur_1115 ... 314 1e-83 gi|284033412|ref|YP_003383343.1| hypothetical protein Kfla_5536 ... 311 7e-83 gi|159039677|ref|YP_001538930.1| hypothetical protein Sare_4149 ... 309 3e-82 gi|258654150|ref|YP_003203306.1| hypothetical protein Namu_4025 ... 308 6e-82 gi|145596279|ref|YP_001160576.1| hypothetical protein Strop_3767... 306 2e-81 gi|134097761|ref|YP_001103422.1| succinate dehydrogenase [Saccha... 300 1e-79 gi|302542783|ref|ZP_07295125.1| integral membrane protein [Strep... 300 2e-79 gi|297157547|gb|ADI07259.1| integral membrane protein [Streptomy... 299 3e-79 gi|324997712|ref|ZP_08118824.1| putative succinate dehydrogenase... 297 9e-79 gi|331698357|ref|YP_004334596.1| hypothetical protein Psed_4591 ... 297 1e-78 gi|345009079|ref|YP_004811433.1| integral membrane protein [Stre... 292 4e-77 gi|21223479|ref|NP_629258.1| integral membrane protein [Streptom... 285 7e-75 gi|337767942|emb|CCB76655.1| putative integral membrane protein ... 285 7e-75 gi|302536673|ref|ZP_07289015.1| integral membrane protein [Strep... 284 9e-75 gi|29829722|ref|NP_824356.1| hypothetical protein SAV_3180 [Stre... 284 1e-74 gi|256375563|ref|YP_003099223.1| integral membrane protein [Acti... 283 1e-74 gi|289769313|ref|ZP_06528691.1| integral membrane protein [Strep... 283 2e-74 gi|254390246|ref|ZP_05005465.1| integral membrane protein [Strep... 283 2e-74 >gi|15607390|ref|NP_214763.1| succinate dehydrogenase membrane anchor subunit [Mycobacterium tuberculosis H37Rv] gi|15839630|ref|NP_334667.1| hypothetical protein MT0263 [Mycobacterium tuberculosis CDC1551] gi|31791427|ref|NP_853920.1| succinate dehydrogenase [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=273 Score = 560 bits (1442), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW Sbjct 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA Sbjct 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP Sbjct 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 Query 181 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH Sbjct 181 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 Query 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG Sbjct 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 >gi|240168473|ref|ZP_04747132.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium kansasii ATCC 12478] Length=274 Score = 508 bits (1309), Expect = 3e-142, Method: Compositional matrix adjust. Identities = 242/273 (89%), Positives = 256/273 (94%), Gaps = 0/273 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAP ANRP GVF+PTRAQIPERTLRTD WW PL+TN+G LAFI YATTRAFWGS YW Sbjct 1 MSAPAANRPDTGVFSPTRAQIPERTLRTDTWWWAPLVTNIGFLAFIVYATTRAFWGSGYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 VEKYHYLTPFYSPCVSASC+PGASHLGVWFGHFP WIPLG +VLPFLLGFRLTCYYYRKA Sbjct 61 VEKYHYLTPFYSPCVSASCEPGASHLGVWFGHFPWWIPLGMLVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVWQSPT CAVPEPRAHYTGETRLPLI+QN+HRYFFYIAVVVS+INTYDA+ AFHSP Sbjct 121 YYRSVWQSPTGCAVPEPRAHYTGETRLPLIIQNSHRYFFYIAVVVSVINTYDAVMAFHSP 180 Query 181 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 SGFGFGLGNVIL NV+LLWAYT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVSKLNTRH Sbjct 181 SGFGFGLGNVILVTNVLLLWAYTVSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 Query 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 M FAWITLGTL+LTDFYIMLVA+G+ITDLRFIG Sbjct 241 MLFAWITLGTLSLTDFYIMLVATGTITDLRFIG 273 >gi|183980540|ref|YP_001848831.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium marinum M] gi|183173866|gb|ACC38976.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium marinum M] Length=273 Score = 508 bits (1307), Expect = 5e-142, Method: Compositional matrix adjust. Identities = 242/273 (89%), Positives = 258/273 (95%), Gaps = 0/273 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRP GVF+P+RA+IP+RTLRTDLWW PL+TN+G LAFI YATTRAFWGS YW Sbjct 1 MSAPTANRPDTGVFSPSRAKIPQRTLRTDLWWWAPLVTNIGFLAFIVYATTRAFWGSGYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 VEKYHYLTPFYSPCVSASC PGASHLGVWFGHFP WIPLG++VLPFLLGFRLTCYYYRKA Sbjct 61 VEKYHYLTPFYSPCVSASCAPGASHLGVWFGHFPWWIPLGSLVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVWQSPT CAVPEPRAHYTGETRLPLI+QN+HRYFFY+AVVVSLINTYDAI AFHSP Sbjct 121 YYRSVWQSPTGCAVPEPRAHYTGETRLPLIIQNSHRYFFYVAVVVSLINTYDAIMAFHSP 180 Query 181 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 +GFGFGLGNVIL NV+LLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH Sbjct 181 TGFGFGLGNVILVTNVLLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 Query 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 M FAWITLGTL+LTDFYIMLVA+ +ITDLRFIG Sbjct 241 MLFAWITLGTLSLTDFYIMLVATNTITDLRFIG 273 >gi|118616891|ref|YP_905223.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium ulcerans Agy99] gi|118569001|gb|ABL03752.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium ulcerans Agy99] Length=273 Score = 506 bits (1304), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 241/273 (89%), Positives = 257/273 (95%), Gaps = 0/273 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRP GVF+P+RA+IP+RTLRTDLWW PL+TN+G LAFI YATTRAFWGS YW Sbjct 1 MSAPTANRPDTGVFSPSRAKIPQRTLRTDLWWWAPLVTNIGFLAFIVYATTRAFWGSGYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 VEKYHYLTPFYSPCVSASC PGASHLGVWFGHFP WIPLG++VLPFLLGFRLTCYYYRKA Sbjct 61 VEKYHYLTPFYSPCVSASCAPGASHLGVWFGHFPWWIPLGSLVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVWQSPT CAVPEPRAHYTGETRLPLI+QN+HRYFFY+AVVVSLINTYDAI AFHSP Sbjct 121 YYRSVWQSPTGCAVPEPRAHYTGETRLPLIIQNSHRYFFYVAVVVSLINTYDAIMAFHSP 180 Query 181 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 +GFGFGLGNVI NV+LLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH Sbjct 181 TGFGFGLGNVIFVTNVLLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 Query 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 M FAWITLGTL+LTDFYIMLVA+ +ITDLRFIG Sbjct 241 MLFAWITLGTLSLTDFYIMLVATNTITDLRFIG 273 >gi|118468474|ref|YP_884832.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118169761|gb|ABK70657.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] Length=273 Score = 461 bits (1187), Expect = 4e-128, Method: Compositional matrix adjust. Identities = 220/273 (81%), Positives = 237/273 (87%), Gaps = 0/273 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTA+R A GVF+P RAQIPERTLRTD WW PLLTNLGL AF+ YAT RAFWGS YW Sbjct 1 MSAPTADRRATGVFSPRRAQIPERTLRTDRWWQAPLLTNLGLAAFVIYATIRAFWGSAYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 V YHYLTPFYSPCVS +C PG+SH G W G P +IP+ + LPFLL FRLTCYYYRKA Sbjct 61 VADYHYLTPFYSPCVSTACAPGSSHFGQWVGDLPWFIPMAFISLPFLLAFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVWQSPT+CAV EP A YTGETR PLI+QN HRYFFY AV++SL+NTYDAI AFHSP Sbjct 121 YYRSVWQSPTACAVAEPHAKYTGETRFPLILQNIHRYFFYAAVLISLVNTYDAITAFHSP 180 Query 181 SGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 SGFGFGLGNVILT NV+LLW YT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVSKLNTRH Sbjct 181 SGFGFGLGNVILTGNVILLWVYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 Query 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 M FAWITLGTL LTDFYIMLVASG+I+DLRFIG Sbjct 241 MLFAWITLGTLVLTDFYIMLVASGTISDLRFIG 273 >gi|169631496|ref|YP_001705145.1| putative succinate dehydrogenase [Mycobacterium abscessus ATCC 19977] gi|169243463|emb|CAM64491.1| Putative succinate dehydrogenase [Mycobacterium abscessus] Length=269 Score = 435 bits (1118), Expect = 4e-120, Method: Compositional matrix adjust. Identities = 205/266 (78%), Positives = 227/266 (86%), Gaps = 2/266 (0%) Query 10 AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTP 69 A GVF+P+RA+IPERTLRTD WWL PLLTNLGL F+ YAT RAFWGS YWV +YHYLTP Sbjct 4 ATGVFSPSRARIPERTLRTDRWWLAPLLTNLGLATFVIYATVRAFWGSAYWVPQYHYLTP 63 Query 70 FYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSP 129 FYSPCVS +C PGASH G W G P +IP+ + LPFLL FRLTCYYYRKAYYRSVWQSP Sbjct 64 FYSPCVSTACAPGASHFGHWVGELPWFIPMAFISLPFLLAFRLTCYYYRKAYYRSVWQSP 123 Query 130 TSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPS--GFGFGL 187 T+CAV EP A Y+GETRLPLI+QN HRYFFY A ++S++NTYDAI AFHS GFGFG+ Sbjct 124 TACAVAEPHARYSGETRLPLIMQNIHRYFFYAAAIISVVNTYDAIVAFHSEKTGGFGFGM 183 Query 188 GNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWIT 247 GNVIL NVVLLW YT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVSKLNTRHM FAWIT Sbjct 184 GNVILVTNVVLLWVYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSKLNTRHMLFAWIT 243 Query 248 LGTLALTDFYIMLVASGSITDLRFIG 273 LGTL LTD YIMLVASG+I+D+RF+G Sbjct 244 LGTLILTDLYIMLVASGTISDMRFVG 269 >gi|300784259|ref|YP_003764550.1| hypothetical protein AMED_2351 [Amycolatopsis mediterranei U32] gi|299793773|gb|ADJ44148.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340525677|gb|AEK40882.1| hypothetical protein RAM_11960 [Amycolatopsis mediterranei S699] Length=274 Score = 426 bits (1095), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 206/274 (76%), Positives = 226/274 (83%), Gaps = 1/274 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAP N GV P RA+I ERTLRTD WWL PLLT LGL AFI YAT R+F + YW Sbjct 1 MSAPADNGVGTGVRAPKRARIAERTLRTDRWWLQPLLTVLGLSAFIIYATVRSFVRTAYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 V YHYLTPFYSPC+S SC G+SH G WFG PG+IPLG +VLPFLLGFRLTCYYYRKA Sbjct 61 VPDYHYLTPFYSPCLSTSCVEGSSHFGHWFGDLPGFIPLGFVVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVW SP +CAV EP A YTGETRLPLI+QN HRYFFY+A++VSL+NTYDAI AFH Sbjct 121 YYRSVWFSPPACAVAEPHAKYTGETRLPLIIQNVHRYFFYVALIVSLVNTYDAITAFHGK 180 Query 181 S-GFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTR 239 + GFGFGLGNVIL NV+LLWAYT+SCHSCRH TGGRLKHFSKHPVRYWIWTQV+KLNTR Sbjct 181 TGGFGFGLGNVILLANVILLWAYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVTKLNTR 240 Query 240 HMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 HM AW TLGTL LTDFY+MLVASG+I DLRF+ Sbjct 241 HMTLAWTTLGTLVLTDFYVMLVASGAIADLRFVN 274 >gi|120401313|ref|YP_951142.1| putative succinate dehydrogenase membrane anchor subunit [Mycobacterium vanbaalenii PYR-1] gi|119954131|gb|ABM11136.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Mycobacterium vanbaalenii PYR-1] Length=273 Score = 418 bits (1074), Expect = 5e-115, Method: Compositional matrix adjust. Identities = 202/279 (73%), Positives = 227/279 (82%), Gaps = 12/279 (4%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTA+R A GVF+P RAQIP+RTLRTD WW+ PL+ NLG F+ YAT RAF + Y+ Sbjct 1 MSAPTADRNATGVFSPGRAQIPQRTLRTDRWWMSPLIINLGFATFVIYATVRAFMQNNYF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLG-----VWFGHFPGWIPLGAMVLPFLLGFRLTCY 115 V +Y YLTPFYSPCVS C P ASH G VW W+P A+ LPFLL FRLTCY Sbjct 61 VAEYGYLTPFYSPCVSTGCVPEASHFGQFLPDVW------WLPYAALSLPFLLLFRLTCY 114 Query 116 YYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIA 175 YYR AYYR+VWQSPT+CAV EPRA YTGETRLPLI+QNTHRYFFYIA ++S+INTYDAI Sbjct 115 YYRGAYYRTVWQSPTACAVAEPRAKYTGETRLPLIIQNTHRYFFYIAAIISVINTYDAII 174 Query 176 AFHSPSG-FGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVS 234 AFH P G FG GLGNVIL +NV+LLW YT+SCHSCRH GGRLKHFSKHPVRYW+WTQ+S Sbjct 175 AFHKPDGGFGLGLGNVILVVNVILLWTYTVSCHSCRHVAGGRLKHFSKHPVRYWMWTQIS 234 Query 235 KLNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 KLNTRH +AWITLGTL LTDFYIMLVASG+I+DLRFIG Sbjct 235 KLNTRHKMYAWITLGTLMLTDFYIMLVASGTISDLRFIG 273 >gi|108797234|ref|YP_637431.1| putative succinate dehydrogenase membrane anchor subunit [Mycobacterium sp. MCS] gi|119866319|ref|YP_936271.1| putative succinate dehydrogenase membrane anchor subunit [Mycobacterium sp. KMS] gi|126432857|ref|YP_001068548.1| putative succinate dehydrogenase membrane anchor subunit [Mycobacterium sp. JLS] gi|108767653|gb|ABG06375.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Mycobacterium sp. MCS] gi|119692408|gb|ABL89481.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Mycobacterium sp. KMS] gi|126232657|gb|ABN96057.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Mycobacterium sp. JLS] Length=272 Score = 416 bits (1069), Expect = 2e-114, Method: Compositional matrix adjust. Identities = 212/278 (77%), Positives = 233/278 (84%), Gaps = 11/278 (3%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTA+R GV++ RA+IP+RTLRTD WW+P LLTNLGL AF+ YAT RAFWGS YW Sbjct 1 MSAPTADREGTGVYSAGRAKIPQRTLRTDRWWVPSLLTNLGLAAFVVYATIRAFWGSAYW 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLG-----VWFGHFPGWIPLGAMVLPFLLGFRLTCY 115 V YHYLTPFYSPCVS C P ASH G VW W+P A LPFLL FRLTCY Sbjct 61 VADYHYLTPFYSPCVSKGCIPEASHFGQILPDVW------WLPYAAFSLPFLLLFRLTCY 114 Query 116 YYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIA 175 YYRKAYYRSVWQSP CAV EP + YTGET+LPLI+QN HRYFFY+AV++SLINT+DAI Sbjct 115 YYRKAYYRSVWQSPPGCAVAEPHSTYTGETKLPLIMQNLHRYFFYVAVLISLINTWDAIL 174 Query 176 AFHSPSGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSK 235 AFHSPSGFGFGLGNVIL +NVVLLW YTISCHSCRH TGGRLKHFSKHPVRYW+WTQ+SK Sbjct 175 AFHSPSGFGFGLGNVILVVNVVLLWTYTISCHSCRHVTGGRLKHFSKHPVRYWMWTQISK 234 Query 236 LNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 LNTRHMQFAWITLGTL LTDFY+MLVASG+I+DLRFIG Sbjct 235 LNTRHMQFAWITLGTLVLTDFYVMLVASGTISDLRFIG 272 >gi|302525501|ref|ZP_07277843.1| integral membrane protein [Streptomyces sp. AA4] gi|302434396|gb|EFL06212.1| integral membrane protein [Streptomyces sp. AA4] Length=276 Score = 412 bits (1058), Expect = 4e-113, Method: Compositional matrix adjust. Identities = 208/276 (76%), Positives = 229/276 (83%), Gaps = 3/276 (1%) Query 1 MSAPTANRPA---IGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGS 57 MSAP N + GV P RA++ RTLRTD WWL PLLT LGL F+ YAT RAF + Sbjct 1 MSAPADNDVSSARTGVRAPGRARLAARTLRTDRWWLSPLLTVLGLATFVVYATVRAFVRT 60 Query 58 QYWVEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYY 117 YWV +YHYLTPFYSPCVS SC PG+SH G WFG P W+PLG +VLPFLLGFRLTCYYY Sbjct 61 AYWVPEYHYLTPFYSPCVSTSCVPGSSHFGHWFGEMPSWLPLGVLVLPFLLGFRLTCYYY 120 Query 118 RKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAF 177 RKAYYRSVW SP +CAV EP A YTGETRLPLIVQN HRYFFY+A VVSL+NTYDAI AF Sbjct 121 RKAYYRSVWFSPPACAVAEPHARYTGETRLPLIVQNVHRYFFYVACVVSLVNTYDAIVAF 180 Query 178 HSPSGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLN 237 SP+GFGFGLGNVIL +NVVLLWAYT+SCHSCRH TGGRLKHFSKHPVRYWIWTQV+KLN Sbjct 181 QSPTGFGFGLGNVILVLNVVLLWAYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVTKLN 240 Query 238 TRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 TRHM AW TLGTL LTDFY+MLV+SG+I+DLRF+G Sbjct 241 TRHMTLAWTTLGTLVLTDFYVMLVSSGAISDLRFVG 276 >gi|54027575|ref|YP_121817.1| hypothetical protein nfa56010 [Nocardia farcinica IFM 10152] gi|54019083|dbj|BAD60453.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=276 Score = 408 bits (1048), Expect = 5e-112, Method: Compositional matrix adjust. Identities = 201/274 (74%), Positives = 225/274 (83%), Gaps = 2/274 (0%) Query 2 SAPTANRPA-IGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 +APT A GVF+ TRA+I ERTLRTD WWLPPL+T LGL AF+ YAT R+F + YW Sbjct 3 AAPTVVPEAGTGVFSKTRARIAERTLRTDRWWLPPLITVLGLGAFVVYATIRSFVRTAYW 62 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 V +YHYLTPFYSPC+SASC PG+SH G F P WIPLG +VLPFLLGFRLTCYYYRKA Sbjct 63 VPEYHYLTPFYSPCLSASCVPGSSHFGQPFPELPMWIPLGFVVLPFLLGFRLTCYYYRKA 122 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH-S 179 YYRSVW SP +CAV EP YTGETRLPLIVQN HRYFFY+A+VVS+INTYDA+ AFH + Sbjct 123 YYRSVWFSPPACAVAEPHRRYTGETRLPLIVQNAHRYFFYVALVVSVINTYDALVAFHGA 182 Query 180 PSGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTR 239 GFGFGLGN++L NV+LLWAYT+SCHSCRH GGRLKHFS HPVRYW WTQVSKLNTR Sbjct 183 DGGFGFGLGNIVLLGNVILLWAYTLSCHSCRHIAGGRLKHFSAHPVRYWFWTQVSKLNTR 242 Query 240 HMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 HM AW TLGTL LTDFY+MLVAS +I+DLRFI Sbjct 243 HMALAWTTLGTLVLTDFYVMLVASDTISDLRFIN 276 >gi|296167531|ref|ZP_06849883.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897153|gb|EFG76762.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=275 Score = 401 bits (1030), Expect = 6e-110, Method: Compositional matrix adjust. Identities = 197/278 (71%), Positives = 227/278 (82%), Gaps = 8/278 (2%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRPA GVF+P RA+IP+RTLRTD WW+ PL +LG AF+ YAT RAF + ++ Sbjct 1 MSAPTANRPASGVFSPARARIPQRTLRTDRWWMSPLRIDLGFAAFLIYATFRAFQQNYFF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPG--WIPLGAMVLPFLLGFRLTCYYYR 118 V +YHYLTPFYSPCVS +C G +H W P W+P A+ LPFLL FRLTCYYYR Sbjct 61 VPQYHYLTPFYSPCVSTAC--GEAH-DFWPQILPNVWWLPYAALTLPFLLLFRLTCYYYR 117 Query 119 KAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH 178 AYYR+VWQSP++CAV EPR HYTGETR PLIVQN+HRYFFYIA ++S+INTYDAI FH Sbjct 118 GAYYRTVWQSPSACAVAEPRVHYTGETRFPLIVQNSHRYFFYIAGIISVINTYDAIIGFH 177 Query 179 S---PSGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSK 235 S P GFGFGLGN+I+ NVV+LW YT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVS Sbjct 178 SDSGPHGFGFGLGNLIMVGNVVMLWVYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSH 237 Query 236 LNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 +NTRH Q+AWITLGTL LTDFYI LVASG+I+DLRF+G Sbjct 238 INTRHKQYAWITLGTLMLTDFYIALVASGTISDLRFVG 275 >gi|325674440|ref|ZP_08154128.1| integral membrane protein [Rhodococcus equi ATCC 33707] gi|325554700|gb|EGD24374.1| integral membrane protein [Rhodococcus equi ATCC 33707] Length=272 Score = 395 bits (1016), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 189/274 (69%), Positives = 218/274 (80%), Gaps = 3/274 (1%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 M AP IG P RA I RTLRTD WWL PLLT LGL F+ YAT R+F + YW Sbjct 1 MRAPRVTE--IGAPPPARADIRARTLRTDRWWLAPLLTTLGLAVFVVYATVRSFVRTAYW 58 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 V+ YHYLTPFYSPC+S SC PGASH G W G P WIPLG +VLPFLLGFRLTCYYYRKA Sbjct 59 VDDYHYLTPFYSPCISESCVPGASHFGTWVGELPMWIPLGFLVLPFLLGFRLTCYYYRKA 118 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRS+W +P +CAV EP + Y+GETR PLIVQN HRYFFY+A+VVSL+NTYDA+ A+ P Sbjct 119 YYRSIWLAPPACAVAEPHSTYSGETRFPLIVQNVHRYFFYVALVVSLVNTYDAVRAYEGP 178 Query 181 SG-FGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTR 239 +G FG G+G++I+T NV+LLWAYT+SCHSCRH TGGRLKHFS HP+RY +WT VS+LNTR Sbjct 179 NGSFGLGVGSLIITGNVILLWAYTLSCHSCRHVTGGRLKHFSAHPIRYRLWTWVSRLNTR 238 Query 240 HMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 HMQ AW TLGTL +TDFYIMLVASG+I+DLR I Sbjct 239 HMQLAWTTLGTLIVTDFYIMLVASGTISDLRLIN 272 >gi|312140083|ref|YP_004007419.1| succinate dehydrogenase membrane subunit sdhd1 [Rhodococcus equi 103S] gi|311889422|emb|CBH48739.1| succinate dehydrogenase membrane subunit SdhD1 [Rhodococcus equi 103S] Length=267 Score = 394 bits (1012), Expect = 7e-108, Method: Compositional matrix adjust. Identities = 186/264 (71%), Positives = 215/264 (82%), Gaps = 1/264 (0%) Query 11 IGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPF 70 IG P RA I RTLRTD WWL PLLT LGL F+ YAT R+F + YWV+ YHYLTPF Sbjct 4 IGAPPPARADIRARTLRTDRWWLAPLLTTLGLAVFVVYATVRSFVRTAYWVDDYHYLTPF 63 Query 71 YSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPT 130 YSPC+S SC PGASH G W G P WIPLG +VLPFLLGFRLTCYYYRKAYYRS+W +P Sbjct 64 YSPCISESCVPGASHFGTWVGELPMWIPLGFLVLPFLLGFRLTCYYYRKAYYRSIWLAPP 123 Query 131 SCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSG-FGFGLGN 189 +CAV EP + Y+GETR PLIVQN HRYFFY+A+VVSL+NTYDA+ A+ P+G FG G+G+ Sbjct 124 ACAVAEPHSTYSGETRFPLIVQNVHRYFFYVALVVSLVNTYDAVRAYEGPNGSFGLGVGS 183 Query 190 VILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLG 249 +I+T NV+LLWAYT+SCHSCRH TGGRLKHFS HP+RY +WT VS+LNTRHMQ AW TLG Sbjct 184 LIITGNVILLWAYTLSCHSCRHVTGGRLKHFSAHPIRYRLWTWVSRLNTRHMQLAWTTLG 243 Query 250 TLALTDFYIMLVASGSITDLRFIG 273 TL +TDFYIMLVASG+I+DLR I Sbjct 244 TLIVTDFYIMLVASGTISDLRLIN 267 >gi|226360191|ref|YP_002777969.1| hypothetical protein ROP_07770 [Rhodococcus opacus B4] gi|226238676|dbj|BAH49024.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=274 Score = 393 bits (1009), Expect = 2e-107, Method: Compositional matrix adjust. Identities = 191/274 (70%), Positives = 219/274 (80%), Gaps = 1/274 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAP N + GV PTRA+I ERTLRTD WWL PLLT LGL F+ YA+ R++ + Y+ Sbjct 1 MSAPPKNPESAGVGAPTRARIAERTLRTDRWWLAPLLTVLGLSVFVVYASVRSWVRTAYF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 VE+YHYLTPFYSPC+S SC PG+S G G P IPLG +VLPFLLGFRLTCYYYRKA Sbjct 61 VEEYHYLTPFYSPCLSDSCVPGSSDFGTPIGELPMIIPLGFLVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH-S 179 YYRSVW SP +CAV EP YTGETRLPLIVQN HRYFFY+A+VVSLINTYDAI AFH + Sbjct 121 YYRSVWFSPPACAVAEPHGTYTGETRLPLIVQNAHRYFFYVALVVSLINTYDAIRAFHGA 180 Query 180 PSGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTR 239 GFG GLG +++ NV+LLWAYT+SCHSCRH TGGRL HFS+HP+RY +WT VSKLNTR Sbjct 181 DGGFGIGLGTLVMVGNVILLWAYTVSCHSCRHVTGGRLTHFSRHPIRYRLWTGVSKLNTR 240 Query 240 HMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 HMQ AW TL TL +TDFY+MLVASG+I+DLR I Sbjct 241 HMQLAWTTLATLIVTDFYVMLVASGTISDLRLIN 274 >gi|111018063|ref|YP_701035.1| succinate dehydrogenase [Rhodococcus jostii RHA1] gi|110817593|gb|ABG92877.1| possible succinate dehydrogenase [Rhodococcus jostii RHA1] Length=274 Score = 389 bits (999), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 189/274 (69%), Positives = 217/274 (80%), Gaps = 1/274 (0%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAP + + GV PTRA+I ERTLRTD WW+ PLLT LGL F+ YA+ R++ + Y+ Sbjct 1 MSAPPKDSESAGVGAPTRARIAERTLRTDRWWVAPLLTVLGLSVFVVYASVRSWVRTAYF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 VE YHYLTPFYSPC+S SC PG+S G G P IPLG +VLPFLLGFRLTCYYYRKA Sbjct 61 VEDYHYLTPFYSPCLSDSCVPGSSDFGTPIGELPMIIPLGFLVLPFLLGFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH-S 179 YYRSVW SP +CAV EP + YTGETRLPLIVQN HRYFFY+AVVVSLINTYDAI AFH + Sbjct 121 YYRSVWFSPPACAVAEPHSTYTGETRLPLIVQNAHRYFFYVAVVVSLINTYDAIRAFHGA 180 Query 180 PSGFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTR 239 GFG GLG +++ NV+LLWAYT+SCHSCRH GGRL HFSKHP+RY +WT VS LNTR Sbjct 181 DGGFGIGLGTLVMVCNVILLWAYTVSCHSCRHVMGGRLTHFSKHPIRYRLWTWVSTLNTR 240 Query 240 HMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 HMQ AW TL TL +TDFY+MLVASG+I+DLR I Sbjct 241 HMQLAWTTLATLIITDFYVMLVASGTISDLRLIN 274 >gi|118465127|ref|YP_884029.1| integral membrane protein [Mycobacterium avium 104] gi|118166414|gb|ABK67311.1| integral membrane protein [Mycobacterium avium 104] Length=275 Score = 381 bits (978), Expect = 7e-104, Method: Compositional matrix adjust. Identities = 190/278 (69%), Positives = 218/278 (79%), Gaps = 8/278 (2%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRPA GVF+PTRA+I +RTLRTD WW+ PL +LG AF+ YAT RAF + ++ Sbjct 1 MSAPTANRPASGVFSPTRARIEQRTLRTDRWWMSPLRIDLGFAAFLIYATARAFQQNYFF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPG--WIPLGAMVLPFLLGFRLTCYYYR 118 V KYHYLTPFYSPCVS C +W P W+P A+ LPFLL FRLTCYYYR Sbjct 61 VGKYHYLTPFYSPCVSKGCGEAGD---IWPQFLPDVWWLPYAAVSLPFLLLFRLTCYYYR 117 Query 119 KAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH 178 AYYR+VWQSPT+CAV EPR HYTGETR PLI+QNTHRYFFYIA ++S+IN+YDAI AFH Sbjct 118 GAYYRTVWQSPTACAVAEPRVHYTGETRFPLIIQNTHRYFFYIAFIISVINSYDAIVAFH 177 Query 179 SPSGFGFGLG---NVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSK 235 S +G G N+IL NV++LW YT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVS Sbjct 178 SDTGPGGFGFGLGNLILLGNVIMLWVYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSH 237 Query 236 LNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 +NTRH +AWITLGTL LTDFYI LVASG+I DLRF+G Sbjct 238 INTRHKLYAWITLGTLMLTDFYIALVASGTIPDLRFVG 275 >gi|41409797|ref|NP_962633.1| hypothetical protein MAP3699c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398629|gb|AAS06249.1| hypothetical protein MAP_3699c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460117|gb|EGO39023.1| hypothetical protein MAPs_43730 [Mycobacterium avium subsp. paratuberculosis S397] Length=275 Score = 380 bits (975), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 190/278 (69%), Positives = 218/278 (79%), Gaps = 8/278 (2%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRPA GVF+PTRA+I +RTLRTD WW+ PL +LG AF+ YAT RAF + ++ Sbjct 1 MSAPTANRPASGVFSPTRARIEQRTLRTDRWWMSPLRIDLGFAAFLIYATARAFQQNYFF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPG--WIPLGAMVLPFLLGFRLTCYYYR 118 V KYHYLTPFYSPCVS C +W P W+P A+ LPFLL FRLTCYYYR Sbjct 61 VGKYHYLTPFYSPCVSKGCGEAGD---IWPQFLPDVWWLPYAAVSLPFLLLFRLTCYYYR 117 Query 119 KAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH 178 AYYR+VWQSPT+CAV EPR HYTGETR PLI+QNTHRYFFYIA ++S+IN+YDAI AFH Sbjct 118 GAYYRTVWQSPTACAVAEPRVHYTGETRFPLIIQNTHRYFFYIAFLISVINSYDAIVAFH 177 Query 179 SPSGFGFGLG---NVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSK 235 S +G G N+IL NV++LW YT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVS Sbjct 178 SDTGPGGFGFGLGNLILLGNVIMLWVYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSH 237 Query 236 LNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 +NTRH +AWITLGTL LTDFYI LVASG+I DLRF+G Sbjct 238 INTRHKLYAWITLGTLMLTDFYIALVASGTIPDLRFVG 275 >gi|254777347|ref|ZP_05218863.1| hypothetical protein MaviaA2_22131 [Mycobacterium avium subsp. avium ATCC 25291] Length=275 Score = 378 bits (971), Expect = 4e-103, Method: Compositional matrix adjust. Identities = 189/278 (68%), Positives = 217/278 (79%), Gaps = 8/278 (2%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTANRPA GVF+PTRA+I +RTLRTD WW+ PL +LG AF+ YAT RAF + ++ Sbjct 1 MSAPTANRPASGVFSPTRARIEQRTLRTDRWWMSPLRIDLGFAAFLIYATARAFQQNYFF 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPG--WIPLGAMVLPFLLGFRLTCYYYR 118 V KYHYLTPFYSPCVS C +W P W+P A+ LPFLL FRLTCYYYR Sbjct 61 VGKYHYLTPFYSPCVSKGCGEAGD---IWPQFLPDVWWLPYAAVSLPFLLLFRLTCYYYR 117 Query 119 KAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH 178 AYYR+VWQSPT+CAV EPR HYTGETR PLI+QN HRYFFYIA ++S+IN+YDAI AFH Sbjct 118 GAYYRTVWQSPTACAVAEPRVHYTGETRFPLIIQNIHRYFFYIAFLISVINSYDAIVAFH 177 Query 179 SPSGFGFGLG---NVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSK 235 S +G G N+IL NV++LW YT+SCHSCRH TGGRLKHFSKHPVRYWIWTQVS Sbjct 178 SDTGPGGFGFGLGNLILLGNVIMLWVYTLSCHSCRHVTGGRLKHFSKHPVRYWIWTQVSH 237 Query 236 LNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 +NTRH +AWITLGTL LTDFYI LVASG+I DLRF+G Sbjct 238 INTRHKLYAWITLGTLMLTDFYIALVASGTIPDLRFVG 275 >gi|145220997|ref|YP_001131675.1| putative succinate dehydrogenase membrane anchor subunit [Mycobacterium gilvum PYR-GCK] gi|315442032|ref|YP_004074911.1| hypothetical protein Mspyr1_03630 [Mycobacterium sp. Spyr1] gi|145213483|gb|ABP42887.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Mycobacterium gilvum PYR-GCK] gi|315260335|gb|ADT97076.1| hypothetical protein Mspyr1_03630 [Mycobacterium sp. Spyr1] Length=273 Score = 373 bits (958), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 193/279 (70%), Positives = 218/279 (79%), Gaps = 12/279 (4%) Query 1 MSAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 MSAPTA+R A GVF+P RAQI +RTLRTD W P+L +LG AFI YAT RAF Y+ Sbjct 1 MSAPTADRKATGVFSPGRAQIRQRTLRTDNWLKSPILIDLGFAAFIIYATVRAFMQDHYY 60 Query 61 VEKYHYLTPFYSPCVSASCQPGASHLG-----VWFGHFPGWIPLGAMVLPFLLGFRLTCY 115 VEKY YLTPFYSPCVS C P ASH G VW W+P A+ LPFLL FRLTCY Sbjct 61 VEKYGYLTPFYSPCVSTGCVPEASHFGQFLPDVW------WLPYAAVSLPFLLLFRLTCY 114 Query 116 YYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIA 175 YYR AYYR+VWQ+PT+CAV EP A YTGETR PLI+QNTHRYFFYIAV++SL+NTYDAI Sbjct 115 YYRGAYYRTVWQAPTACAVAEPHAKYTGETRFPLIIQNTHRYFFYIAVLISLVNTYDAII 174 Query 176 AFHSPSG-FGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVS 234 AF P G FG GLGN+IL +NVVLLW YT+SCHSCRH GGRLKHFSKHPVRYW+WTQ+S Sbjct 175 AFSKPDGGFGVGLGNLILVVNVVLLWTYTVSCHSCRHVAGGRLKHFSKHPVRYWMWTQIS 234 Query 235 KLNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 KLN RH Q+AWITLGTL LTDFY+M +A+G +D R IG Sbjct 235 KLNVRHKQYAWITLGTLMLTDFYVMALAAGWFSDPRLIG 273 >gi|257056752|ref|YP_003134584.1| hypothetical protein Svir_27760 [Saccharomonospora viridis DSM 43017] gi|256586624|gb|ACU97757.1| hypothetical protein Svir_27760 [Saccharomonospora viridis DSM 43017] Length=280 Score = 364 bits (934), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 183/257 (72%), Positives = 206/257 (81%), Gaps = 0/257 (0%) Query 17 TRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVS 76 TR +P+RTLRTD WWLPPLLT LGL AF+ YAT R+F YW + HYLTPFYSPC+S Sbjct 24 TRVALPQRTLRTDRWWLPPLLTTLGLAAFVVYATIRSFMREGYWDAENHYLTPFYSPCLS 83 Query 77 ASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPE 136 SC PG+SH G G P +IPL + LPFLLGFRLTCYYYRKAYYRSVW +P +CAV E Sbjct 84 TSCVPGSSHFGTPIGELPEFIPLAFLSLPFLLGFRLTCYYYRKAYYRSVWFAPPACAVTE 143 Query 137 PRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLGNVILTINV 196 P A YTGETRLPLIVQN HRYFFY+A+ ++LINTYDAI AF G G GLGNVIL NV Sbjct 144 PHARYTGETRLPLIVQNVHRYFFYVALSITLINTYDAIVAFGGERGLGIGLGNVILLGNV 203 Query 197 VLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDF 256 V+LW YT+SCHSCRH TGGRLKHFSK+PVRYWIWTQVSKLN RHMQFAWITLGTL LTD Sbjct 204 VMLWCYTLSCHSCRHVTGGRLKHFSKNPVRYWIWTQVSKLNVRHMQFAWITLGTLVLTDL 263 Query 257 YIMLVASGSITDLRFIG 273 Y+ LV++ +I DLRF+ Sbjct 264 YVWLVSTQTIPDLRFVN 280 >gi|333988876|ref|YP_004521490.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium sp. JDM601] gi|333484844|gb|AEF34236.1| succinate dehydrogenase (membrane anchor subunit) [Mycobacterium sp. JDM601] Length=274 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 189/273 (70%), Positives = 221/273 (81%), Gaps = 6/273 (2%) Query 7 NRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHY 66 NRP GVF+ TRA+I +RTLRTD WWL PL N+ L A++ YAT RAFWGS YWV++YHY Sbjct 2 NRPGTGVFSATRARIADRTLRTDRWWLSPLRVNVFLSAWVLYATVRAFWGSDYWVDRYHY 61 Query 67 LTPFYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVW 126 LTPFYSPC+SASC G+SHLGVW FP WIPLGA+VLPFLL FRLTCYYYRKAYYR+ W Sbjct 62 LTPFYSPCISASCVEGSSHLGVWLPEFPWWIPLGALVLPFLLAFRLTCYYYRKAYYRAYW 121 Query 127 QSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPS----- 181 SP CAVPEPRA YTGETR PLI+QN+HRYFFY A+ ++++NTYDAI AF+S Sbjct 122 LSPAGCAVPEPRAGYTGETRFPLIIQNSHRYFFYAALAITMLNTYDAITAFYSADANGGA 181 Query 182 -GFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRH 240 GFGFGLGN++L +NV +LWAYT CHSCRH GGRL HFSK+PVRYW+W+++S N RH Sbjct 182 GGFGFGLGNIVLCVNVAMLWAYTGGCHSCRHVMGGRLTHFSKNPVRYWLWSKISWFNGRH 241 Query 241 MQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 QFAWITLGTLA TDFY+ +VASG TD+RFIG Sbjct 242 QQFAWITLGTLAFTDFYVWMVASGVFTDIRFIG 274 >gi|330470011|ref|YP_004407754.1| succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Verrucosispora maris AB-18-032] gi|328812982|gb|AEB47154.1| succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Verrucosispora maris AB-18-032] Length=247 Score = 355 bits (910), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 177/250 (71%), Positives = 197/250 (79%), Gaps = 5/250 (2%) Query 26 LRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGASH 85 +RTD WW+ PL+T +GL A+I YAT R F YWVE+YHYLTPFYSPCV+ C P ASH Sbjct 1 MRTDRWWIAPLITVIGLSAWIAYATVRVFMHKWYWVEQYHYLTPFYSPCVTDRCIPEASH 60 Query 86 LGVWFGHFPGW--IPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAHYTG 143 G + PGW IP A LPFLL FRLTCYYYRKAYYRS W SP +CAVP+ A Y+G Sbjct 61 FG---QYLPGWWIIPDAAFTLPFLLLFRLTCYYYRKAYYRSFWLSPPACAVPDGHASYSG 117 Query 144 ETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLGNVILTINVVLLWAYT 203 ETR PLIVQN+HRYFFY A ++SLINT+DAIAAF SP GFGFGLGN+IL NVV+LWAYT Sbjct 118 ETRFPLIVQNSHRYFFYFAAIISLINTWDAIAAFRSPEGFGFGLGNLILLGNVVMLWAYT 177 Query 204 ISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIMLVAS 263 ISCHSCRH GGRLKHFSKHPVRY W VS LN RHMQ AWITLGTLALTDFY+M VA+ Sbjct 178 ISCHSCRHIIGGRLKHFSKHPVRYRAWGYVSWLNVRHMQLAWITLGTLALTDFYVMSVAA 237 Query 264 GSITDLRFIG 273 G I+DLRFI Sbjct 238 GWISDLRFIN 247 >gi|302869778|ref|YP_003838415.1| putative succinate dehydrogenase (membrane anchor subunit) [Micromonospora aurantiaca ATCC 27029] gi|315503740|ref|YP_004082627.1| succinate dehydrogenase membrane anchor subunit [Micromonospora sp. L5] gi|302572637|gb|ADL48839.1| putative succinate dehydrogenase (membrane anchor subunit) [Micromonospora aurantiaca ATCC 27029] gi|315410359|gb|ADU08476.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Micromonospora sp. L5] Length=273 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 176/253 (70%), Positives = 198/253 (79%), Gaps = 7/253 (2%) Query 24 RTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGA 83 +TLRTD WW+ PL+T +GL A++ YAT R F YWVE+YHYLTPFYSPCV+ C G+ Sbjct 25 KTLRTDRWWIAPLITVVGLSAWVIYATVRVFMHKWYWVEQYHYLTPFYSPCVTDRCVEGS 84 Query 84 SHLGVWFGHF-PGW--IPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAH 140 SH FG F PGW IP A+ LPFLL FRLTCYYYRKAYYRS W SP +CAVP+ Sbjct 85 SH----FGQFLPGWWIIPDAALTLPFLLLFRLTCYYYRKAYYRSFWLSPPACAVPDGHQS 140 Query 141 YTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLGNVILTINVVLLW 200 Y+GETR PL+ QN HRYFFY A ++SLINT+DAI AFHSP GFGFGLGN+IL NVV+LW Sbjct 141 YSGETRFPLLGQNLHRYFFYAAAIISLINTWDAILAFHSPEGFGFGLGNIILIGNVVMLW 200 Query 201 AYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIML 260 AYTISCHSCRH GGRLKHFSKHP+RY WT VS LN RHMQ AWITLGTLALTDFY+M Sbjct 201 AYTISCHSCRHIIGGRLKHFSKHPMRYKAWTGVSWLNVRHMQLAWITLGTLALTDFYVMA 260 Query 261 VASGSITDLRFIG 273 VA+G I DLRFI Sbjct 261 VAAGWINDLRFIN 273 >gi|238060960|ref|ZP_04605669.1| succinate dehydrogenase [Micromonospora sp. ATCC 39149] gi|237882771|gb|EEP71599.1| succinate dehydrogenase [Micromonospora sp. ATCC 39149] Length=268 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 172/253 (68%), Positives = 197/253 (78%), Gaps = 7/253 (2%) Query 24 RTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGA 83 +TLRTD WW PL+T +GL A++ YAT R F YWVE+YHYLTPFYSPCV+ C GA Sbjct 20 KTLRTDRWWFAPLITVIGLSAWVAYATVRVFMHKWYWVEQYHYLTPFYSPCVTDRCVEGA 79 Query 84 SHLGVWFGHF-PGW--IPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAH 140 +H FG F PGW +P A+ LPFLL FRLTCYYYRKAYYRS W SP +CAVP+ Sbjct 80 AH----FGRFLPGWWIVPDAALTLPFLLLFRLTCYYYRKAYYRSFWLSPPACAVPDKHDS 135 Query 141 YTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLGNVILTINVVLLW 200 Y+GETR PL+ QN HRYFFY A ++SLINT+DAI AFHSP GFGFGLGN++L +NVV+LW Sbjct 136 YSGETRFPLLGQNLHRYFFYAAAIISLINTWDAILAFHSPEGFGFGLGNIVLLVNVVMLW 195 Query 201 AYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIML 260 AYTISCHSCRH GGRLKHFSKHPVRY WT VS LN RHMQ AWITLGTLALTDFY+M Sbjct 196 AYTISCHSCRHIIGGRLKHFSKHPVRYKAWTGVSWLNVRHMQLAWITLGTLALTDFYVMA 255 Query 261 VASGSITDLRFIG 273 +++G DLRFI Sbjct 256 ISAGWFDDLRFIN 268 >gi|269957000|ref|YP_003326789.1| putative integral membrane protein [Xylanimonas cellulosilytica DSM 15894] gi|269305681|gb|ACZ31231.1| putative integral membrane protein [Xylanimonas cellulosilytica DSM 15894] Length=274 Score = 351 bits (901), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 176/274 (65%), Positives = 204/274 (75%), Gaps = 7/274 (2%) Query 5 TANRPAI--GVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVE 62 TA RP + GV P RAQ+ RTLRTD WWLPP T +GL F+ Y RAF QY+ Sbjct 3 TAARPGVAHGVAAPGRAQVDARTLRTDRWWLPPAATTIGLAIFLVYGGVRAF-QQQYFFA 61 Query 63 KYHYLTPFYSPCVSASC--QPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKA 120 YLTPFYSPCVS C +PGA+H G++ P IP A+ LPFLL FRLTCYYYRKA Sbjct 62 DERYLTPFYSPCVSLGCAAEPGAAHFGMFIPDHP-LIPYAALTLPFLLLFRLTCYYYRKA 120 Query 121 YYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSP 180 YYRSVW +P +C+VPEP Y GETR PLI+QN+HRYFFY+ +V+SLINTYDA+ AF P Sbjct 121 YYRSVWMAPAACSVPEPHGTYHGETRFPLILQNSHRYFFYLTLVISLINTYDAVVAFRHP 180 Query 181 S-GFGFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTR 239 + GF G+GN++L NV LLW YTISCHSCRHA GGRLKHFS+HPVRY +WT +S LNTR Sbjct 181 ADGFVVGVGNLVLLTNVALLWLYTISCHSCRHAMGGRLKHFSQHPVRYRLWTTISALNTR 240 Query 240 HMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 H FAWITLGTL LTD Y+MLVA G+ITDLR IG Sbjct 241 HHLFAWITLGTLILTDLYVMLVARGTITDLRLIG 274 >gi|343927513|ref|ZP_08766984.1| hypothetical protein GOALK_094_00190 [Gordonia alkanivorans NBRC 16433] gi|343762587|dbj|GAA13910.1| hypothetical protein GOALK_094_00190 [Gordonia alkanivorans NBRC 16433] Length=239 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 177/239 (75%), Positives = 199/239 (84%), Gaps = 1/239 (0%) Query 36 LLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGASHLGVWFGHFPG 95 +LT +GL AF+ YAT R+F S Y+V YHYLTPFYSPC+S SC PG+SH G F P Sbjct 1 MLTVIGLSAFVIYATVRSFVRSAYYVADYHYLTPFYSPCLSESCVPGSSHFGTPFPELPM 60 Query 96 WIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTH 155 WIPL + LPFLLGFRLTCYYYRKAYYRS+W SP +CAV EP YTGETRLPLI+QN+H Sbjct 61 WIPLAFLTLPFLLGFRLTCYYYRKAYYRSIWLSPPACAVAEPHTKYTGETRLPLIIQNSH 120 Query 156 RYFFYIAVVVSLINTYDAIAAFHSPS-GFGFGLGNVILTINVVLLWAYTISCHSCRHATG 214 RYFFY AVV+S+IN+YD I +FH+ GFG GLGNVIL +NVVLLW YT+SCHSCRH TG Sbjct 121 RYFFYAAVVISVINSYDVIVSFHAKDGGFGLGLGNVILVVNVVLLWVYTVSCHSCRHVTG 180 Query 215 GRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRFIG 273 GRLKHFS HPVRYWIWTQVSKLNTRHMQFAWITLGTL LTDFYIMLVAS +I+DLRF+G Sbjct 181 GRLKHFSNHPVRYWIWTQVSKLNTRHMQFAWITLGTLVLTDFYIMLVASNTISDLRFVG 239 >gi|342859275|ref|ZP_08715929.1| integral membrane protein [Mycobacterium colombiense CECT 3035] gi|342133516|gb|EGT86719.1| integral membrane protein [Mycobacterium colombiense CECT 3035] Length=243 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 168/246 (69%), Positives = 194/246 (79%), Gaps = 8/246 (3%) Query 33 LPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGASHLGVWFGH 92 + PL +LG AFI YAT RAF ++V +YHYLTPFYSPC+S +C GAS W Sbjct 1 MSPLRIDLGFAAFIIYATARAFQRGDFFVAQYHYLTPFYSPCLSNACG-GASDF--WPQI 57 Query 93 FPG--WIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLI 150 P W+P A+ LPFLL FRLTCYYYR AYYR+VWQSPT+CAV EPR HY+GET+LPLI Sbjct 58 LPNVWWLPFAALTLPFLLLFRLTCYYYRGAYYRTVWQSPTACAVAEPRVHYSGETKLPLI 117 Query 151 VQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLG---NVILTINVVLLWAYTISCH 207 +QN+HRYFFYIA ++S+INTYDAI AFHS SG G NVI+ NV++LW YT+SCH Sbjct 118 IQNSHRYFFYIAGIISVINTYDAIVAFHSDSGPGGFGFGLGNVIMVGNVIMLWVYTLSCH 177 Query 208 SCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIMLVASGSIT 267 SCRH TGGRLKHFSKHPVRYWIWTQVSK+NTRH Q+AWITLGTL LTDFYI LVASG+I Sbjct 178 SCRHITGGRLKHFSKHPVRYWIWTQVSKINTRHKQYAWITLGTLMLTDFYIALVASGTIP 237 Query 268 DLRFIG 273 DLRF+G Sbjct 238 DLRFVG 243 >gi|254820420|ref|ZP_05225421.1| hypothetical protein MintA_10846 [Mycobacterium intracellulare ATCC 13950] Length=243 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/246 (67%), Positives = 191/246 (78%), Gaps = 8/246 (3%) Query 33 LPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGASHLGVWFGH 92 + PL +LG AF+ YAT RAF + ++V KYHYLTPFYSPCVS C +W Sbjct 1 MSPLRIDLGFAAFVIYATARAFQQNYFFVPKYHYLTPFYSPCVSKGCGEAGD---IWPQF 57 Query 93 FPG--WIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLI 150 P W+P A+ LPFLL FRLTCYYYR AYYR+VWQSPT+CAV EPR HY+GET+ PLI Sbjct 58 LPDVWWLPYAAVSLPFLLLFRLTCYYYRGAYYRTVWQSPTACAVAEPRVHYSGETKFPLI 117 Query 151 VQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLG---NVILTINVVLLWAYTISCH 207 +QNTHRYFFYIA ++S++N+YDAI AFHS SG G N+IL NV++LW YT+SCH Sbjct 118 IQNTHRYFFYIACLISIVNSYDAIVAFHSDSGPGGFGFGLGNLILLGNVIMLWVYTLSCH 177 Query 208 SCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIMLVASGSIT 267 SCRH TGGRLKHFSK+PVRYWIWTQVS +NTRH QFAWITLGTL LTDFYI LVASG+I+ Sbjct 178 SCRHVTGGRLKHFSKNPVRYWIWTQVSAMNTRHKQFAWITLGTLMLTDFYIALVASGAIS 237 Query 268 DLRFIG 273 DLRF+G Sbjct 238 DLRFVG 243 >gi|229822044|ref|YP_002883570.1| integral membrane protein [Beutenbergia cavernae DSM 12333] gi|229567957|gb|ACQ81808.1| integral membrane protein [Beutenbergia cavernae DSM 12333] Length=269 Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 173/267 (65%), Positives = 199/267 (75%), Gaps = 5/267 (1%) Query 10 AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTP 69 A GV P RAQI RTLRTD W P+LT +GL F+ Y RAF QY+ YLTP Sbjct 5 ARGVDAPGRAQIDARTLRTDNWRREPILTVIGLSIFLIYGGVRAF-QQQYFFADERYLTP 63 Query 70 FYSPCVSASC--QPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQ 127 FYSPCVS C +PG+SH G++ P IP A+ LPFLL FRLTCYYYRKAYYRS W Sbjct 64 FYSPCVSLGCASEPGSSHFGMFLPDNP-LIPYAALSLPFLLLFRLTCYYYRKAYYRSFWL 122 Query 128 SPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPS-GFGFG 186 +P +CAVPEP YTGETR PL++QN HRYFFY+AV++SL+N+YDAI AFH PS GF G Sbjct 123 APAACAVPEPHGRYTGETRFPLVMQNVHRYFFYLAVLISLVNSYDAIIAFHHPSDGFVVG 182 Query 187 LGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWI 246 +GN++L NVVLLW YT SCHSCRH GGRL HFSKHPVRYW WT++S LNTRHM FAWI Sbjct 183 IGNLVLLANVVLLWCYTASCHSCRHVMGGRLTHFSKHPVRYWFWTRISALNTRHMLFAWI 242 Query 247 TLGTLALTDFYIMLVASGSITDLRFIG 273 TL +L LTD Y+ LVASG+ITDLR IG Sbjct 243 TLASLILTDLYVALVASGTITDLRLIG 269 >gi|334337181|ref|YP_004542333.1| integral membrane protein [Isoptericola variabilis 225] gi|334107549|gb|AEG44439.1| integral membrane protein [Isoptericola variabilis 225] Length=269 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 176/267 (66%), Positives = 201/267 (76%), Gaps = 5/267 (1%) Query 10 AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTP 69 A GV + RAQ+ LRTD WWL P T LGLL F+ Y RAF QY+ YLTP Sbjct 5 ARGVESRGRAQVGVGNLRTDRWWLAPAATALGLLVFVVYGGVRAF-QQQYFFADERYLTP 63 Query 70 FYSPCVSASC--QPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQ 127 FYSPCVS C +PGA+H G + P IP A+ LPFLL FRLTCYYYRKAYYRS W Sbjct 64 FYSPCVSVGCASEPGAAHFGTFLPDHP-LIPYAALSLPFLLLFRLTCYYYRKAYYRSFWL 122 Query 128 SPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPS-GFGFG 186 SP +CAVPEP A YTGETR PL++QN HRYFFY+AV+VSL+N+YDAI AF P+ GF G Sbjct 123 SPPACAVPEPHAAYTGETRFPLVLQNAHRYFFYVAVLVSLVNSYDAIVAFRHPTDGFVVG 182 Query 187 LGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWI 246 +GN++L +NVVLLW YT+SCHSCRH GGRL HFSKHPVRYW WT+VS LNTRHMQFAWI Sbjct 183 VGNLVLLVNVVLLWCYTLSCHSCRHVMGGRLTHFSKHPVRYWFWTKVSALNTRHMQFAWI 242 Query 247 TLGTLALTDFYIMLVASGSITDLRFIG 273 TLGTL LTD Y+MLVA G+ITDLR +G Sbjct 243 TLGTLILTDLYVMLVARGTITDLRIVG 269 >gi|297562854|ref|YP_003681828.1| hypothetical protein Ndas_3925 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847302|gb|ADH69322.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=270 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 155/257 (61%), Positives = 188/257 (74%), Gaps = 2/257 (0%) Query 18 RAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSA 77 RA+IP+RTLRTD WWL PLLT LGL F+ YAT R F YWV+++HYLTPFYSPC++ Sbjct 13 RARIPQRTLRTDNWWLGPLLTALGLATFVVYATLRVFQQDHYWVQEHHYLTPFYSPCIAQ 72 Query 78 SCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEP 137 C P A+ G FP IP + LP LL FRLTCYYYRKAYYRS W SP +CAV EP Sbjct 73 QCAPDAALFGRLPVEFPPLIPYALVSLPILLLFRLTCYYYRKAYYRSFWFSPPACAVREP 132 Query 138 RAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAF--HSPSGFGFGLGNVILTIN 195 YTGETR ++VQN HRYFFY A V++LINT+D + AF + GFG GLGN+I+ +N Sbjct 133 HGAYTGETRPLMLVQNGHRYFFYAAFVITLINTWDMLIAFLHGAEGGFGIGLGNLIMLVN 192 Query 196 VVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTD 255 V++LW YT+SCHSCRH GGRL F +HPVRYW+W ++S LN RHM F W+++ TL LTD Sbjct 193 VLMLWGYTLSCHSCRHIFGGRLSSFGRHPVRYWMWGRLSVLNHRHMYFGWLSIATLILTD 252 Query 256 FYIMLVASGSITDLRFI 272 YI LVASG+I DLR + Sbjct 253 AYIALVASGTINDLRIL 269 >gi|269125368|ref|YP_003298738.1| hypothetical protein Tcur_1115 [Thermomonospora curvata DSM 43183] gi|268310326|gb|ACY96700.1| hypothetical protein Tcur_1115 [Thermomonospora curvata DSM 43183] Length=266 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 152/256 (60%), Positives = 185/256 (73%), Gaps = 1/256 (0%) Query 18 RAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSA 77 RAQI RTLRTD W P+ + ++ YAT RA G YWV++Y+YLTPFYSPCVS Sbjct 11 RAQISARTLRTDNWRSYPIFIVVLFTTWVAYATVRAMMGKYYWVDEYNYLTPFYSPCVST 70 Query 78 SCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEP 137 C PG++H G + P +IP A+ LPFLL FRLTCYYYRKAYYRS W+SP +CAV EP Sbjct 71 ECVPGSAHFGTFLPELPFFIPFAAVSLPFLLLFRLTCYYYRKAYYRSYWRSPAACAVREP 130 Query 138 RAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSG-FGFGLGNVILTINV 196 YTGE R PL+ QN HRYF+ AV++S+INTYDA+ AF +G F GLG++IL NV Sbjct 131 HKKYTGERRFPLVAQNLHRYFWAAAVIISIINTYDALLAFTDSNGDFRMGLGSLILLGNV 190 Query 197 VLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDF 256 +LLW YT+SCHSCRH GGRLK+FSKHP+RY WT VSKLN RH Q+A ITLG+L + D Sbjct 191 ILLWGYTLSCHSCRHIVGGRLKNFSKHPLRYRAWTLVSKLNERHGQYALITLGSLVVADL 250 Query 257 YIMLVASGSITDLRFI 272 Y+ LV+ G I+D R I Sbjct 251 YVALVSGGVISDPRII 266 >gi|284033412|ref|YP_003383343.1| hypothetical protein Kfla_5536 [Kribbella flavida DSM 17836] gi|283812705|gb|ADB34544.1| hypothetical protein Kfla_5536 [Kribbella flavida DSM 17836] Length=266 Score = 311 bits (797), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 150/262 (58%), Positives = 187/262 (72%), Gaps = 1/262 (0%) Query 10 AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTP 69 A+G+ +P RA I ++TLRTD WWL PL + L F+ YAT R F YWV++Y YLTP Sbjct 2 ALGIQSPGRASIGQKTLRTDRWWLAPLRIGVILAFFVVYATVRIFMNKWYWVDQYEYLTP 61 Query 70 FYSPCVSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSP 129 YSPCVS SC PG+SHLG WF FP ++PL + L GFR TCYYYRKA YRS++ SP Sbjct 62 LYSPCVSESCVPGSSHLGTWFPKFPVFLPLSIITFAVLAGFRGTCYYYRKAGYRSLFFSP 121 Query 130 TSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPS-GFGFGLG 188 +CAVPEP YTGE + PL+ N HRYFFY A+V ++N YD + AFH GFG GLG Sbjct 122 AACAVPEPHKSYTGERKFPLVALNLHRYFFYGALVFGVLNVYDGVLAFHGKDGGFGIGLG 181 Query 189 NVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITL 248 +I+ +N+V LW YT+SCH+CRH GGRLK+FSKHP+RY WT VSKLN +H FA I+L Sbjct 182 TLIIWVNLVFLWLYTLSCHACRHIVGGRLKNFSKHPLRYRYWTFVSKLNPKHGTFAMISL 241 Query 249 GTLALTDFYIMLVASGSITDLR 270 T+ LTDFYIM +++G +DLR Sbjct 242 FTVILTDFYIMALSAGWFSDLR 263 >gi|159039677|ref|YP_001538930.1| hypothetical protein Sare_4149 [Salinispora arenicola CNS-205] gi|157918512|gb|ABV99939.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length=272 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 151/250 (61%), Positives = 181/250 (73%), Gaps = 1/250 (0%) Query 25 TLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGAS 84 TLRTD WW+ P+ LL FI Y+T R F Y+VE YHYLTP YSPC++ SC PG+S Sbjct 23 TLRTDRWWVQPVGIAAILLFFIVYSTIRIFMAKWYYVEDYHYLTPLYSPCMTDSCVPGSS 82 Query 85 HLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAHYTGE 144 H G FG FP ++PLG + P + GFR+TCYYYRKA YRS+W SP +CAV EP YTGE Sbjct 83 HFGTPFGEFPYFLPLGIVAFPIVAGFRVTCYYYRKAGYRSLWASPPACAVTEPHRKYTGE 142 Query 145 TRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSG-FGFGLGNVILTINVVLLWAYT 203 TRLPL V N HRYFFY+A V+ LIN YDAI AF P G FG GLG +I+ +N+V L YT Sbjct 143 TRLPLFVMNWHRYFFYLAFVILLINIYDAILAFRGPDGAFGIGLGTLIILVNIVALAGYT 202 Query 204 ISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIMLVAS 263 +SCH+CRH GGRLKHFS++P+RY WT VSKLN RH FA ++L T+ TDFYIM V++ Sbjct 203 LSCHACRHVMGGRLKHFSRNPLRYRFWTLVSKLNVRHGTFAMVSLFTVLFTDFYIMAVSA 262 Query 264 GSITDLRFIG 273 G TDLRFI Sbjct 263 GWFTDLRFIN 272 >gi|258654150|ref|YP_003203306.1| hypothetical protein Namu_4025 [Nakamurella multipartita DSM 44233] gi|258557375|gb|ACV80317.1| hypothetical protein Namu_4025 [Nakamurella multipartita DSM 44233] Length=261 Score = 308 bits (789), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 157/264 (60%), Positives = 191/264 (73%), Gaps = 10/264 (3%) Query 12 GVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFY 71 GV TP RA+I RTLRTD W PL+T LGL F+ Y T RAFW Y+ Y L+PFY Sbjct 3 GVNTPGRARIAARTLRTDHWRRAPLVTFLGLSLFVVYGTVRAFWAVNYYAAPY--LSPFY 60 Query 72 SPCVSASCQPGASHLGVWFGHFPGWIPL--GAMVLPFLLGFRLTCYYYRKAYYRSVWQSP 129 SPC++ +C P AS FG W PL ++L F LGFRLTCYYYRKAYYRS WQSP Sbjct 61 SPCITTACVPEASD----FGQPIAWWPLSPALLILIFPLGFRLTCYYYRKAYYRSFWQSP 116 Query 130 TSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGF--GFGL 187 T+CAV EP YTGET+ PLI+QN HRYF+Y+A++ +I TYDAI +F +P+G GL Sbjct 117 TACAVAEPHKRYTGETQFPLIMQNVHRYFWYVAMIFGVILTYDAILSFRNPAGDWGHMGL 176 Query 188 GNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWIT 247 G VIL IN L+W YT+SCHSCRH GG+LKHFS+HP+RY W Q+SKLN +HMQ AW++ Sbjct 177 GTVILLINAGLIWLYTLSCHSCRHIMGGKLKHFSRHPIRYKAWQQISKLNAKHMQLAWVS 236 Query 248 LGTLALTDFYIMLVASGSITDLRF 271 L LA+TDFYI+L+ASG+I DLRF Sbjct 237 LIWLAVTDFYIVLLASGTIHDLRF 260 >gi|145596279|ref|YP_001160576.1| hypothetical protein Strop_3767 [Salinispora tropica CNB-440] gi|145305616|gb|ABP56198.1| hypothetical protein Strop_3767 [Salinispora tropica CNB-440] Length=272 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/250 (60%), Positives = 179/250 (72%), Gaps = 1/250 (0%) Query 25 TLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSASCQPGAS 84 TLRTD WW+ P+ LL FI Y+T R F Y+VE YHYLTP YSPC++ SC PG+S Sbjct 23 TLRTDRWWVQPVGIAAILLLFIVYSTIRIFMAKWYYVEDYHYLTPLYSPCMTDSCVPGSS 82 Query 85 HLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEPRAHYTGE 144 H G FG FP ++PLG + P + GFR+TCYYYRKA YRS+W SP +C+V EP YTGE Sbjct 83 HFGTPFGEFPFFLPLGIVAFPIVAGFRVTCYYYRKAGYRSLWASPPACSVTEPHQKYTGE 142 Query 145 TRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSG-FGFGLGNVILTINVVLLWAYT 203 TR PL V N HRYFFY+A V+ LIN YDA AF P G FG GLG +I+ +N+V L YT Sbjct 143 TRFPLFVMNWHRYFFYLAFVILLINIYDAFLAFRGPDGAFGVGLGTLIILVNIVALAGYT 202 Query 204 ISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFYIMLVAS 263 +SCH+CRH GGRLKHFS++PVRY WT +SKLN RH FA ++L T+ TDFYIM V++ Sbjct 203 LSCHACRHVMGGRLKHFSRNPVRYRFWTLISKLNVRHGTFAMVSLFTVIFTDFYIMAVSA 262 Query 264 GSITDLRFIG 273 G TDLRFI Sbjct 263 GWFTDLRFIN 272 >gi|134097761|ref|YP_001103422.1| succinate dehydrogenase [Saccharopolyspora erythraea NRRL 2338] gi|291008610|ref|ZP_06566583.1| succinate dehydrogenase [Saccharopolyspora erythraea NRRL 2338] gi|133910384|emb|CAM00497.1| possible succinate dehydrogenase [Saccharopolyspora erythraea NRRL 2338] Length=266 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 162/260 (63%), Positives = 194/260 (75%), Gaps = 1/260 (0%) Query 15 TPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPC 74 T R ++ RTLRTD WWLPPL+T L L AF+ Y T RAF YWV +YHYL PFYSPC Sbjct 7 TAGRVRLSARTLRTDRWWLPPLVTFLALFAFVVYGTIRAFMNVWYWVPEYHYLAPFYSPC 66 Query 75 VSASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAV 134 +S SC PG+SH G F W+P VLPF+LGFRLTCYYYRKAYYR+ W SP +CAV Sbjct 67 LSTSCVPGSSHFGQPFPDLVPWVPPPLFVLPFVLGFRLTCYYYRKAYYRAFWASPPACAV 126 Query 135 PEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH-SPSGFGFGLGNVILT 193 EP A YTGETR PLI+QN HRYFFY A+V++ I TYD + AFH + GFG GLG V++ Sbjct 127 TEPHARYTGETRFPLIMQNVHRYFFYPALVIAAILTYDTVIAFHGADGGFGIGLGTVLMV 186 Query 194 INVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLAL 253 +NVVLLWAYT+SCHSCRH GG+L+HFSKHPVRYW+WT+ + LN RHM AW +L ++AL Sbjct 187 VNVVLLWAYTLSCHSCRHLVGGKLRHFSKHPVRYWLWTKATWLNGRHMLLAWSSLVSVAL 246 Query 254 TDFYIMLVASGSITDLRFIG 273 D Y+MLVA+G+ DLR I Sbjct 247 VDIYVMLVAAGAFPDLRLIN 266 >gi|302542783|ref|ZP_07295125.1| integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460401|gb|EFL23494.1| integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length=281 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 154/267 (58%), Positives = 187/267 (71%), Gaps = 14/267 (5%) Query 12 GVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFY 71 GV +P+RA IP R LRTD WWL P +T GL AFI Y+T RAF G Y+ E Y ++PFY Sbjct 21 GVRSPSRAAIPARHLRTDRWWLAPAVTAAGLFAFIVYSTWRAFAGDNYYAEPY--VSPFY 78 Query 72 SPCVSASCQP---GAS--HLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVW 126 SPCV+ +C P GA+ G W+G P ++L F LGFRLTCYYYRKAYYR W Sbjct 79 SPCVAQNCVPMKDGANWEIFGAWWGLSPA-----LLILIFPLGFRLTCYYYRKAYYRGFW 133 Query 127 QSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGF--G 184 SP +CAV EPRA+YTGETR PLI+QN HRYFFY AV+V+ I TYD + AF G Sbjct 134 ASPPACAVAEPRANYTGETRFPLILQNIHRYFFYFAVIVAGILTYDTVLAFRDEHGRWGH 193 Query 185 FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFA 244 GLG ++L N+ L+WAYT+SCHSCRH GGRLKHFS+HPVRY +W VS LN RHMQ A Sbjct 194 MGLGTLVLLANIALIWAYTLSCHSCRHIVGGRLKHFSRHPVRYRLWGWVSSLNARHMQLA 253 Query 245 WITLGTLALTDFYIMLVASGSITDLRF 271 W +L ++A+ DFY+ L+ASG+ D RF Sbjct 254 WASLISVAVADFYVFLLASGAFDDPRF 280 >gi|297157547|gb|ADI07259.1| integral membrane protein [Streptomyces bingchenggensis BCW-1] Length=281 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 151/269 (57%), Positives = 187/269 (70%), Gaps = 14/269 (5%) Query 10 AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTP 69 A GV P+RA +P R LRTD WWL P T GL AF+ Y+T RAF G Y+ E Y ++P Sbjct 19 AHGVHAPSRAAVPARHLRTDRWWLSPAATAAGLFAFVVYSTWRAFSGDDYYAEPY--VSP 76 Query 70 FYSPCVSASCQP--GASH---LGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRS 124 FYSPCV+ +C P G ++ G W+G P ++L F LGFRLTCYYYRKAYYR Sbjct 77 FYSPCVAQNCVPMKGGANWEIFGAWWGLSPA-----LLILIFPLGFRLTCYYYRKAYYRG 131 Query 125 VWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGF- 183 W SP +CAVPEPRA Y+GETR PLI+QN HRYFFY AV+V+ I +YD + F G Sbjct 132 FWASPPACAVPEPRAKYSGETRFPLILQNIHRYFFYFAVIVAGILSYDTVLGFRDEHGRW 191 Query 184 -GFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQ 242 GLG ++L +N+ L+WAYT+SCHSCRH GGRL+HFS+HPVRY +W VSKLN RHMQ Sbjct 192 GHMGLGTLVLLVNIALIWAYTLSCHSCRHIVGGRLRHFSRHPVRYRLWGWVSKLNARHMQ 251 Query 243 FAWITLGTLALTDFYIMLVASGSITDLRF 271 AW +L ++A+ DFY+ LVASG+ D RF Sbjct 252 LAWASLVSVAVADFYVYLVASGAFDDPRF 280 >gi|324997712|ref|ZP_08118824.1| putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) [Pseudonocardia sp. P1] Length=270 Score = 297 bits (761), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 161/262 (62%), Positives = 191/262 (73%), Gaps = 12/262 (4%) Query 18 RAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSA 77 RA I RTLRTD WWLPPL T + +A++ YAT RAF Y+V +Y YLTPFYSPCVS Sbjct 15 RATIAARTLRTDRWWLPPLATFVAFVAWVAYATVRAFMQDYYYVAEYGYLTPFYSPCVSV 74 Query 78 SCQPGASHLG-----VWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSC 132 C GA+H G VW W+P A+ LPFLL FRLTCYYYRKAYYR+ W SP +C Sbjct 75 GCVEGAAHFGRFLPDVW------WLPYAAISLPFLLLFRLTCYYYRKAYYRAFWLSPPAC 128 Query 133 AVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLG-NVI 191 AV EP YTGETR PLI+QN HRYFFYIA +++L+N YDA+ +F P G N+I Sbjct 129 AVAEPHQRYTGETRFPLILQNAHRYFFYIAGLITLVNAYDAVVSFAKPGGGFGLGLGNII 188 Query 192 LTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTL 251 L +NVVLL+ YT+SCHSCR A GGRL HFSKHPVRY +WTQVSKLNT HM +AW TL +L Sbjct 189 LVVNVVLLFGYTLSCHSCRSAVGGRLNHFSKHPVRYKLWTQVSKLNTHHMGYAWATLVSL 248 Query 252 ALTDFYIMLVASGSITDLRFIG 273 ALTDFY+M V++G I+DLR +G Sbjct 249 ALTDFYVMAVSAGWISDLRIVG 270 >gi|331698357|ref|YP_004334596.1| hypothetical protein Psed_4591 [Pseudonocardia dioxanivorans CB1190] gi|326953046|gb|AEA26743.1| hypothetical protein Psed_4591 [Pseudonocardia dioxanivorans CB1190] Length=268 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 162/259 (63%), Positives = 189/259 (73%), Gaps = 4/259 (1%) Query 18 RAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWV--EKYHYLTPFYSPCV 75 RAQI ERTLRTD WWLPPLL GL ++ YAT RAF + Y+ + Y YLTPFYSPC Sbjct 11 RAQISERTLRTDRWWLPPLLNVAGLGLWVIYATVRAFMHAYYFTNEQNYSYLTPFYSPCF 70 Query 76 SASCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVP 135 S C P ASH G + + W+P A+ LPFLL FRLTCYYYRKAYYR+ + SP +CAV Sbjct 71 SVGCYPEASHFGQFLPDW-WWLPYAAISLPFLLLFRLTCYYYRKAYYRAFYLSPPACAVA 129 Query 136 EPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSG-FGFGLGNVILTI 194 EP YTGETR PL+ QN HRYFFYIA ++SL+NTYDA+ AF + G FGFGLGN+IL Sbjct 130 EPHKKYTGETRFPLLAQNLHRYFFYIAALISLVNTYDAVVAFINKDGSFGFGLGNIILVA 189 Query 195 NVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALT 254 NVVLLW YT SCHSCR GGRL HFSKHP+RY +W QVS LN +HMQ AW TL +LA+T Sbjct 190 NVVLLWLYTASCHSCRSIIGGRLNHFSKHPLRYKLWGQVSILNGKHMQLAWTTLASLAIT 249 Query 255 DFYIMLVASGSITDLRFIG 273 DFYIM V++G D R +G Sbjct 250 DFYIMAVSAGWWGDPRIVG 268 >gi|345009079|ref|YP_004811433.1| integral membrane protein [Streptomyces violaceusniger Tu 4113] gi|344035428|gb|AEM81153.1| integral membrane protein [Streptomyces violaceusniger Tu 4113] Length=283 Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 149/267 (56%), Positives = 183/267 (69%), Gaps = 14/267 (5%) Query 12 GVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFY 71 GV +RA IP R LR+D WWL P +T GL AFI Y+T RAF G Y+ E Y ++PFY Sbjct 23 GVHGASRAAIPARHLRSDRWWLSPAITAAGLFAFIVYSTWRAFAGDDYYAEPY--VSPFY 80 Query 72 SPCVSASCQP--GASH---LGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVW 126 SPCV+ +C P G ++ G W+G P ++L F LGFRLTCYYYRKAYYR W Sbjct 81 SPCVAQNCVPMKGGANWEIFGAWWGLSPA-----LLILIFPLGFRLTCYYYRKAYYRGFW 135 Query 127 QSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGF--G 184 SP +CAV EPRA YTGETR PL++QN HRYFFY AV+V+ I TYD + F G Sbjct 136 ASPPACAVAEPRAKYTGETRFPLVLQNIHRYFFYFAVIVAGILTYDTVLGFRDEHGRWGH 195 Query 185 FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFA 244 GLG ++L N+ L+WAYT+SCHSCRH GGR+KHFS+HPVRY +W VS LN RHMQ A Sbjct 196 MGLGTLVLLANIALIWAYTLSCHSCRHIVGGRMKHFSRHPVRYRLWGWVSGLNARHMQLA 255 Query 245 WITLGTLALTDFYIMLVASGSITDLRF 271 W +L ++A+ DFY+ LVASG+ D RF Sbjct 256 WASLISVAVADFYVYLVASGAFDDPRF 282 >gi|21223479|ref|NP_629258.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|14799983|emb|CAC44315.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length=278 Score = 285 bits (728), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 150/275 (55%), Positives = 184/275 (67%), Gaps = 15/275 (5%) Query 5 TANRP-AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEK 63 T +RP GV TPTRA I R LRTD WWL P T GLLAF+ Y+T RAF + Y+ Sbjct 10 TEDRPPGGGVHTPTRAAIRARHLRTDRWWLAPAATAAGLLAFVVYSTWRAFANADYYAAP 69 Query 64 YHYLTPFYSPCVSASCQPGASH-----LGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYR 118 Y ++PFYSPC++ +C+P S G W+G P I +L F LGFRLTCYYYR Sbjct 70 Y--VSPFYSPCLAENCEPMRSGPNWELFGTWWGISPAII-----ILIFPLGFRLTCYYYR 122 Query 119 KAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH 178 KAYYR W SP +CAV EP YTGETR PLI+QN HRYFFY A++V+ I +YD + AF Sbjct 123 KAYYRGFWASPPACAVAEPHRKYTGETRFPLILQNVHRYFFYAALLVAGILSYDTVLAFR 182 Query 179 SPS-GFG-FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKL 236 +G GLG ++ N+ L+WAYT+SCHSCRH GG+LKHFS+HPVRY +W V +L Sbjct 183 DEHYAWGHMGLGTLVFLANIALIWAYTLSCHSCRHIVGGKLKHFSRHPVRYRMWQLVGRL 242 Query 237 NTRHMQFAWITLGTLALTDFYIMLVASGSITDLRF 271 N RHMQ AW +L ++AL DFY+ LVASG D RF Sbjct 243 NARHMQLAWASLVSVALADFYVYLVASGVFDDPRF 277 >gi|337767942|emb|CCB76655.1| putative integral membrane protein [Streptomyces cattleya NRRL 8057] Length=276 Score = 285 bits (728), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 150/270 (56%), Positives = 180/270 (67%), Gaps = 14/270 (5%) Query 9 PAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLT 68 P GV P RA +P R LRTD WWL P T L AF+ Y+T RAF G+ Y+ Y ++ Sbjct 13 PGGGVHAPGRAAVPGRHLRTDRWWLAPAATVAALTAFVAYSTWRAFAGADYYAAPY--VS 70 Query 69 PFYSPCVSASCQP---GAS--HLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYR 123 PFYSPC++ C P GA G W+ P I VL F LGFRLTCYYYRKAYYR Sbjct 71 PFYSPCLAHDCVPMKGGADWPLFGPWWSISPALI-----VLIFPLGFRLTCYYYRKAYYR 125 Query 124 SVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGF 183 W SP +CAV EP A YTGETRLPLI+QN HRYFFY AV+V+ + TYDA+ AF P G Sbjct 126 GFWASPPACAVAEPHAKYTGETRLPLILQNLHRYFFYFAVLVAGVLTYDAVLAFRDPGGA 185 Query 184 --GFGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHM 241 GLG ++L N+ L+WAYT+SCHSCRH GGRL+ FSKHPVRY +WT VS+LN HM Sbjct 186 WGHMGLGTLVLLANIALIWAYTLSCHSCRHIVGGRLRTFSKHPVRYRMWTAVSRLNAHHM 245 Query 242 QFAWITLGTLALTDFYIMLVASGSITDLRF 271 AW +L ++A+ DFY+ LVA G+ D RF Sbjct 246 ALAWASLVSVAVADFYVYLVAGGTFADPRF 275 >gi|302536673|ref|ZP_07289015.1| integral membrane protein [Streptomyces sp. C] gi|302445568|gb|EFL17384.1| integral membrane protein [Streptomyces sp. C] Length=274 Score = 284 bits (727), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 152/276 (56%), Positives = 184/276 (67%), Gaps = 15/276 (5%) Query 2 SAPTANRPAIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWV 61 + P RP GV P+RA I R LRTD WWL P T GLLAFI Y+T RAF Y+ Sbjct 5 TEPPQQRPG-GVHGPSRAAITARHLRTDRWWLSPAGTAAGLLAFIAYSTWRAFANDHYYA 63 Query 62 EKYHYLTPFYSPCVSASCQ-----PGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYY 116 Y ++PFYSPC++ +C+ P G W+G P ++L F LGFRLTCYY Sbjct 64 APY--VSPFYSPCLAENCREMRGGPNLDLFGSWWGLSPA-----LLILVFPLGFRLTCYY 116 Query 117 YRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAA 176 YRKAYYR W SP +CAV EP A YTGETR PLI+QN HRYFFY AV V+ I TYD + Sbjct 117 YRKAYYRGFWASPPACAVAEPHASYTGETRFPLILQNLHRYFFYAAVPVAGILTYDTVLT 176 Query 177 FHSPS-GFG-FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVS 234 F +G GLG ++ N+VL+WAYT+SCHSCRH GGRLKHFS+HPVRY +W VS Sbjct 177 FRDEHYAWGHMGLGTLVFLANIVLIWAYTLSCHSCRHIMGGRLKHFSRHPVRYRLWGWVS 236 Query 235 KLNTRHMQFAWITLGTLALTDFYIMLVASGSITDLR 270 +LN RHMQ AW +L ++AL DFY+ L+ASG+ITD R Sbjct 237 RLNARHMQLAWASLISVALCDFYVYLLASGTITDPR 272 >gi|29829722|ref|NP_824356.1| hypothetical protein SAV_3180 [Streptomyces avermitilis MA-4680] gi|29606831|dbj|BAC70891.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length=273 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/267 (56%), Positives = 180/267 (68%), Gaps = 14/267 (5%) Query 12 GVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFY 71 GV T TRA I LRTD WWL P +T GLLAFI Y+T RAF + Y+ Y ++PFY Sbjct 13 GVRTGTRAAIAAPHLRTDRWWLAPAVTAAGLLAFIVYSTWRAFADTDYYAAPY--VSPFY 70 Query 72 SPCVSASCQ-----PGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVW 126 SPC++ CQ P A G W+G P ++L F LGFRLTCYYYRKAYYR W Sbjct 71 SPCLAERCQTMHAGPNADLFGSWWGISPA-----VIILIFPLGFRLTCYYYRKAYYRGFW 125 Query 127 QSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPS-GFG- 184 SP +CAVPEP YTGETR PLI+QN HRYFFY A+VV+ I TYD + +F +G Sbjct 126 ASPPACAVPEPHKKYTGETRFPLILQNVHRYFFYAAIVVAGILTYDTVLSFRDEHYRWGH 185 Query 185 FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFA 244 GLG ++ +N+ L+WAYT+SCHSCRH GG+LKHFSKHPVRY +W V +LN RHM A Sbjct 186 MGLGTLVFLLNITLIWAYTVSCHSCRHIVGGKLKHFSKHPVRYRMWQWVGRLNARHMLLA 245 Query 245 WITLGTLALTDFYIMLVASGSITDLRF 271 W +L ++AL DFY+ LVASG+ D RF Sbjct 246 WASLVSVALADFYVFLVASGAFDDPRF 272 >gi|256375563|ref|YP_003099223.1| integral membrane protein [Actinosynnema mirum DSM 43827] gi|255919866|gb|ACU35377.1| putative integral membrane protein [Actinosynnema mirum DSM 43827] Length=253 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 158/256 (62%), Positives = 186/256 (73%), Gaps = 4/256 (1%) Query 18 RAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEKYHYLTPFYSPCVSA 77 RA+I +RTLRTD WWLPPL T LL YA R F G YWV+ YHYLTP YSPC+S Sbjct 2 RARIEQRTLRTDRWWLPPLATAAALLLISAYAAVRTFMGDYYWVDDYHYLTPMYSPCLSQ 61 Query 78 SCQPGASHLGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYRKAYYRSVWQSPTSCAVPEP 137 C P A+H G PG++ ++LPFLLGFR+TCYYYRKAYYR+ W SP +CAV EP Sbjct 62 ECLPEAAHFGRPLPELPGFLTPPVVILPFLLGFRVTCYYYRKAYYRAAWLSPPACAVAEP 121 Query 138 RAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFHSPSGFGFGLGNVILTINVV 197 A YTGETR PLI QN HRYFF A V+ L+NTYDA+AA + G GLGN+IL +NV Sbjct 122 HARYTGETRFPLIAQNLHRYFFLAASVLLLVNTYDALAALTT----GLGLGNIILLVNVT 177 Query 198 LLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKLNTRHMQFAWITLGTLALTDFY 257 LL AYT+SCHSCRH GGRLKHFS+HPVRY +WT VS+LN RHM AW +L + LTD Y Sbjct 178 LLGAYTLSCHSCRHIAGGRLKHFSRHPVRYRMWTLVSRLNARHMLLAWASLVFVCLTDLY 237 Query 258 IMLVASGSITDLRFIG 273 I LV++G ++DLRFIG Sbjct 238 IALVSAGVVSDLRFIG 253 >gi|289769313|ref|ZP_06528691.1| integral membrane protein [Streptomyces lividans TK24] gi|289699512|gb|EFD66941.1| integral membrane protein [Streptomyces lividans TK24] Length=278 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/275 (55%), Positives = 183/275 (67%), Gaps = 15/275 (5%) Query 5 TANRP-AIGVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYWVEK 63 T +RP GV TPTRA I R LRTD WWL P T GLLAF+ Y+T RAF + Y+ Sbjct 10 TEDRPPGGGVHTPTRAAIRARHLRTDRWWLAPAATAAGLLAFVVYSTWRAFANADYYAAP 69 Query 64 YHYLTPFYSPCVSASCQPGASH-----LGVWFGHFPGWIPLGAMVLPFLLGFRLTCYYYR 118 Y ++PFYSPC++ +C+P S G W+G P I +L F LGFRLTCYYYR Sbjct 70 Y--VSPFYSPCLAENCEPMRSGPNWELFGTWWGISPAII-----ILIFPLGFRLTCYYYR 122 Query 119 KAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIAAFH 178 KAYYR W SP +CAV EP YTGETR PLI+QN HRYFFY A++V+ I +YD + AF Sbjct 123 KAYYRGFWASPPACAVAEPHRKYTGETRFPLILQNVHRYFFYAALLVAGILSYDTVLAFR 182 Query 179 SPS-GFG-FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQVSKL 236 +G GLG ++ N+ L+WAYT+SCHSCRH GG+LKHFS+HPVRY +W V +L Sbjct 183 DEHYAWGHMGLGTLVFLANIALIWAYTLSCHSCRHIVGGKLKHFSRHPVRYRMWQLVGRL 242 Query 237 NTRHMQFAWITLGTLALTDFYIMLVASGSITDLRF 271 N RHMQ AW +L ++AL DFY+ LV SG D RF Sbjct 243 NARHMQLAWASLVSVALADFYVYLVESGVFDDPRF 277 >gi|254390246|ref|ZP_05005465.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294814803|ref|ZP_06773446.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443182|ref|ZP_08217916.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|197703952|gb|EDY49764.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294327402|gb|EFG09045.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length=273 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/278 (56%), Positives = 183/278 (66%), Gaps = 16/278 (5%) Query 3 APTANRPAI--GVFTPTRAQIPERTLRTDLWWLPPLLTNLGLLAFICYATTRAFWGSQYW 60 A RP + GV TRA I R LRTD WWL P LT GLLAFI Y+T RAF + Y+ Sbjct 2 ATGTERPQLDSGVHGATRATIGPRHLRTDRWWLAPALTAGGLLAFIIYSTWRAFSNADYY 61 Query 61 VEKYHYLTPFYSPCVSASCQPGASH-----LGVWFGHFPGWIPLGAMVLPFLLGFRLTCY 115 Y ++PFYSPC++ +C P +G W+G P ++L F LGFRLTCY Sbjct 62 AAPY--VSPFYSPCIAENCVPMKGGPNWEIVGSWWGLSPA-----LLILIFPLGFRLTCY 114 Query 116 YYRKAYYRSVWQSPTSCAVPEPRAHYTGETRLPLIVQNTHRYFFYIAVVVSLINTYDAIA 175 YYRKAYYR W SP +CAV EP YTGETR PLI+QN HRYFFY A+ V+ I TYD + Sbjct 115 YYRKAYYRGFWASPPACAVAEPHRKYTGETRFPLILQNIHRYFFYAALPVAGILTYDTVL 174 Query 176 AFHSPS-GFG-FGLGNVILTINVVLLWAYTISCHSCRHATGGRLKHFSKHPVRYWIWTQV 233 AF FG GLG V+ +N+VL+WAYT+SCHSCRH GGRLKHFS+HPVRY WT V Sbjct 175 AFRDEHYAFGHMGLGTVVFLVNIVLIWAYTLSCHSCRHIVGGRLKHFSRHPVRYRAWTWV 234 Query 234 SKLNTRHMQFAWITLGTLALTDFYIMLVASGSITDLRF 271 +LN RHMQ AW +L ++A DFY+ LVASG+ D RF Sbjct 235 GRLNARHMQLAWASLISVAAADFYVYLVASGAFDDPRF 272 Lambda K H 0.328 0.140 0.487 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 426144143792 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40