BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0253 Length=118 Score E Sequences producing significant alignments: (Bits) Value gi|254233631|ref|ZP_04926957.1| nitrite reductase [NAD(P)H] smal... 235 2e-60 gi|15607394|ref|NP_214767.1| nitrite reductase [NAD(P)H] small s... 233 7e-60 gi|183980545|ref|YP_001848836.1| nitrite reductase [NAD(P)H] sma... 216 9e-55 gi|240168477|ref|ZP_04747136.1| putative nitrite reductase [NAD(... 214 3e-54 gi|118616896|ref|YP_905228.1| nitrite reductase [NAD(P)H] small ... 214 3e-54 gi|254820415|ref|ZP_05225416.1| nitrite reductase [NAD(P)H], sma... 204 4e-51 gi|296167535|ref|ZP_06849887.1| nitrite reductase small subunit ... 199 1e-49 gi|342859270|ref|ZP_08715924.1| nitrite reductase [NAD(P)H], sma... 199 1e-49 gi|118462720|ref|YP_884024.1| nitrite reductase [NAD(P)H], small... 193 8e-48 gi|336460113|gb|EGO39019.1| NAD(P)H-dependent nitrite reductase,... 191 3e-47 gi|120401324|ref|YP_951153.1| nitrite reductase (NAD(P)H), small... 188 2e-46 gi|108797239|ref|YP_637436.1| nitrite reductase (NAD(P)H) large ... 166 9e-40 gi|126432862|ref|YP_001068553.1| nitrite reductase (NAD(P)H), sm... 166 1e-39 gi|118467344|ref|YP_884841.1| nitrite reductase [NAD(P)H] small ... 163 9e-39 gi|145220990|ref|YP_001131668.1| nitrite reductase (NAD(P)H), sm... 162 1e-38 gi|333988880|ref|YP_004521494.1| nitrite reductase [Mycobacteriu... 150 7e-35 gi|333921414|ref|YP_004494995.1| nitrite reductase (NAD(P)H), sm... 137 5e-31 gi|312140630|ref|YP_004007966.1| nitrite reductase small subunit... 133 1e-29 gi|226365837|ref|YP_002783620.1| nitrite reductase small subunit... 128 2e-28 gi|41409801|ref|NP_962637.1| NirD [Mycobacterium avium subsp. pa... 128 3e-28 gi|54026533|ref|YP_120775.1| putative nitrite reductase (NAD(P)H... 127 4e-28 gi|296139103|ref|YP_003646346.1| nitrite reductase (NAD(P)H), sm... 126 1e-27 gi|111023330|ref|YP_706302.1| nitrite reductase [NAD(P)H] small ... 125 2e-27 gi|229490979|ref|ZP_04384812.1| nitrite reductase [NAD(P)H], sma... 123 1e-26 gi|226305695|ref|YP_002765655.1| nitrite reductase small subunit... 123 1e-26 gi|331694956|ref|YP_004331195.1| nitrite reductase (NAD(P)H) sma... 120 5e-26 gi|326382796|ref|ZP_08204486.1| nitrite reductase (NAD(P)H), sma... 117 5e-25 gi|256374986|ref|YP_003098646.1| nitrite reductase (NAD(P)H), sm... 112 2e-23 gi|320010925|gb|ADW05775.1| nitrite reductase (NAD(P)H), small s... 111 4e-23 gi|271967205|ref|YP_003341401.1| nitrite reductase (NAD(P)H) [St... 111 4e-23 gi|324999543|ref|ZP_08120655.1| nitrite reductase small subunit ... 111 4e-23 gi|329934697|ref|ZP_08284738.1| nitrite/sulphite reductase small... 109 1e-22 gi|239987454|ref|ZP_04708118.1| putative nitrite reductase small... 108 2e-22 gi|86739508|ref|YP_479908.1| assimilatory nitrite reductase (NAD... 108 2e-22 gi|269126642|ref|YP_003300012.1| nitrite reductase (NAD(P)H) sma... 107 7e-22 gi|288917313|ref|ZP_06411681.1| nitrite reductase (NAD(P)H), sma... 106 1e-21 gi|289771776|ref|ZP_06531154.1| nitrite reductase small subunit ... 105 3e-21 gi|21220951|ref|NP_626730.1| nitrite reductase small subunit Nir... 105 3e-21 gi|169630602|ref|YP_001704251.1| nitrite reductase [Mycobacteriu... 104 4e-21 gi|345014924|ref|YP_004817278.1| nitrite reductase (NAD(P)H), sm... 103 6e-21 gi|162456776|ref|YP_001619143.1| nitrite reductase (NAD(P)H) [So... 103 7e-21 gi|328882325|emb|CCA55564.1| Nitrite reductase [NAD(P)H] small s... 103 7e-21 gi|134100338|ref|YP_001105999.1| nitrite reductase (NAD(P)H) sma... 103 8e-21 gi|284029382|ref|YP_003379313.1| nitrite reductase (NAD(P)H) sma... 102 2e-20 gi|111220812|ref|YP_711606.1| nitrite reductase small subunit [F... 102 2e-20 gi|297199519|ref|ZP_06916916.1| nitrite reductase [NAD(P)H], sma... 102 2e-20 gi|302551252|ref|ZP_07303594.1| nitrite reductase [NAD(P)H], sma... 102 3e-20 gi|297194498|ref|ZP_06911896.1| nitrite reductase (NAD(P)H) smal... 101 3e-20 gi|326779500|ref|ZP_08238765.1| putative nitrite reductase small... 101 3e-20 gi|291439785|ref|ZP_06579175.1| nitrite reductase small subunit ... 101 3e-20 >gi|254233631|ref|ZP_04926957.1| nitrite reductase [NAD(P)H] small subunit nirD [Mycobacterium tuberculosis C] gi|124603424|gb|EAY61699.1| nitrite reductase [NAD(P)H] small subunit nirD [Mycobacterium tuberculosis C] Length=135 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM Sbjct 18 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 77 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV 118 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV Sbjct 78 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV 135 >gi|15607394|ref|NP_214767.1| nitrite reductase [NAD(P)H] small subunit NirD [Mycobacterium tuberculosis H37Rv] gi|31791431|ref|NP_853924.1| nitrite reductase [NAD(P)H] small subunit NirD [Mycobacterium bovis AF2122/97] gi|121636166|ref|YP_976389.1| putative nitrite reductase [NAD(P)H] small subunit nirD [Mycobacterium bovis BCG str. Pasteur 1173P2] 76 more sequence titles Length=118 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 117/118 (99%), Positives = 118/118 (100%), Gaps = 0/118 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM Sbjct 1 MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV 118 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV Sbjct 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV 118 >gi|183980545|ref|YP_001848836.1| nitrite reductase [NAD(P)H] small subunit NirD [Mycobacterium marinum M] gi|183173871|gb|ACC38981.1| nitrite reductase [NAD(P)H] small subunit NirD [Mycobacterium marinum M] Length=118 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 106/117 (91%), Positives = 112/117 (96%), Gaps = 0/117 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQ ALFRLDDGSVHA+GN+DPFSGAAV+ Sbjct 1 MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQAALFRLDDGSVHALGNIDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 SRGIVGDR GRA VQSPI KQAFALDDGSCLDDPRVSVPVYPARVT EG+IQVAR+A Sbjct 61 SRGIVGDRDGRAAVQSPIQKQAFALDDGSCLDDPRVSVPVYPARVTAEGKIQVARLA 117 >gi|240168477|ref|ZP_04747136.1| putative nitrite reductase [NAD(P)H] small subunit [Mycobacterium kansasii ATCC 12478] Length=118 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/117 (92%), Positives = 110/117 (95%), Gaps = 0/117 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDIQVWTTACAYD LIPGRGVGVLLDDGSQ ALFRLDDGSV AVGNVDPFSGAAV+ Sbjct 1 MTLLNDIQVWTTACAYDQLIPGRGVGVLLDDGSQAALFRLDDGSVRAVGNVDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 SRGIVGDRGGR VQSPILKQAFALDDGSCLDDPRVSVPVYPARVT EG IQVAR+A Sbjct 61 SRGIVGDRGGRVTVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTTEGHIQVARIA 117 >gi|118616896|ref|YP_905228.1| nitrite reductase [NAD(P)H] small subunit NirD [Mycobacterium ulcerans Agy99] gi|118569006|gb|ABL03757.1| nitrite reductase [NAD(P)H] small subunit NirD [Mycobacterium ulcerans Agy99] Length=118 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 105/117 (90%), Positives = 112/117 (96%), Gaps = 0/117 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQ ALFRLDDGSVHA+GN+DPFSGAAV+ Sbjct 1 MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQAALFRLDDGSVHALGNIDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 SRGIVGDR GRA VQSPI KQAFALDDGSCLDDPRVSVPV+PARVT EG+IQVAR+A Sbjct 61 SRGIVGDRDGRAAVQSPIQKQAFALDDGSCLDDPRVSVPVHPARVTAEGKIQVARLA 117 >gi|254820415|ref|ZP_05225416.1| nitrite reductase [NAD(P)H], small subunit [Mycobacterium intracellulare ATCC 13950] Length=122 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 98/115 (86%), Positives = 107/115 (94%), Gaps = 0/115 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDI VWT+ACAYDHLIPGRGVGVLLDDGSQ ALFRLDDGSVHAVGNVDPFSGAAV+ Sbjct 1 MTLLNDIAVWTSACAYDHLIPGRGVGVLLDDGSQAALFRLDDGSVHAVGNVDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVAR 115 SRGIVGDRGGR VQSPILKQAF+L+DGSCLDDP VSVPVYP R+T +G +Q+AR Sbjct 61 SRGIVGDRGGRVTVQSPILKQAFSLEDGSCLDDPSVSVPVYPVRITADGFVQIAR 115 >gi|296167535|ref|ZP_06849887.1| nitrite reductase small subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897157|gb|EFG76766.1| nitrite reductase small subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=118 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/117 (84%), Positives = 105/117 (90%), Gaps = 0/117 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDI VWTTAC YD LIPGRGVGVLLDDGSQ ALFRLDDGSV+AVGNVDPFSGAAV+ Sbjct 1 MTLLNDIAVWTTACEYDRLIPGRGVGVLLDDGSQAALFRLDDGSVYAVGNVDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 SRGIVGDRGGR VQSPILKQAF+L+DGSCLDDP SVPVYPARVT +G +QV R A Sbjct 61 SRGIVGDRGGRVTVQSPILKQAFSLEDGSCLDDPNFSVPVYPARVTADGFVQVGRAA 117 >gi|342859270|ref|ZP_08715924.1| nitrite reductase [NAD(P)H], small subunit [Mycobacterium colombiense CECT 3035] gi|342133511|gb|EGT86714.1| nitrite reductase [NAD(P)H], small subunit [Mycobacterium colombiense CECT 3035] Length=122 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 97/115 (85%), Positives = 106/115 (93%), Gaps = 0/115 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDI VWT+ACAYDHLIPGRGVGVLLDDGSQ ALFRLDDGSV+AVGNVDPFSGAAV+ Sbjct 1 MTLLNDIAVWTSACAYDHLIPGRGVGVLLDDGSQAALFRLDDGSVYAVGNVDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVAR 115 SRGIVGDR GR VQSPILKQAF+L+DGSCLDDP VSVPVYP R+T +G +QVAR Sbjct 61 SRGIVGDRDGRVTVQSPILKQAFSLEDGSCLDDPTVSVPVYPVRITDDGYVQVAR 115 >gi|118462720|ref|YP_884024.1| nitrite reductase [NAD(P)H], small subunit [Mycobacterium avium 104] gi|254777343|ref|ZP_05218859.1| nitrite reductase [NAD(P)H], small subunit [Mycobacterium avium subsp. avium ATCC 25291] gi|118164007|gb|ABK64904.1| nitrite reductase [NAD(P)H], small subunit [Mycobacterium avium 104] Length=122 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 93/115 (81%), Positives = 104/115 (91%), Gaps = 0/115 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDIQVWT+AC+YDHLIPGRGVGVLLDDGSQ ALFRLDDG+V AVGNVDPFSGAAV+ Sbjct 1 MTLLNDIQVWTSACSYDHLIPGRGVGVLLDDGSQAALFRLDDGTVRAVGNVDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVAR 115 SRGIVGDR G VQSPILKQAF+L+DG+CLDDP VSVPVYP R+T +G +QV R Sbjct 61 SRGIVGDRNGCPTVQSPILKQAFSLEDGTCLDDPSVSVPVYPVRITADGYVQVGR 115 >gi|336460113|gb|EGO39019.1| NAD(P)H-dependent nitrite reductase, small subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=122 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 93/115 (81%), Positives = 103/115 (90%), Gaps = 0/115 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLNDIQVWT+AC+YDHLIPGRGVGVLLDDGSQ ALFRLDDG+V AVGNVDPFSGAAV+ Sbjct 1 MTLLNDIQVWTSACSYDHLIPGRGVGVLLDDGSQAALFRLDDGTVRAVGNVDPFSGAAVL 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVAR 115 SRGIVGDR G VQSPILKQAF+L+DG CLDDP VSVPVYP R+T +G +QV R Sbjct 61 SRGIVGDRNGCPTVQSPILKQAFSLEDGICLDDPSVSVPVYPVRITADGYVQVGR 115 >gi|120401324|ref|YP_951153.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium vanbaalenii PYR-1] gi|119954142|gb|ABM11147.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium vanbaalenii PYR-1] Length=115 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/114 (79%), Positives = 101/114 (89%), Gaps = 0/114 (0%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 +TLLND++ WTTAC YD LIP RGVGVLL DG+Q ALFRLDDG+VHAVGN+DPFSGAAVM Sbjct 1 MTLLNDVKTWTTACRYDFLIPNRGVGVLLPDGAQAALFRLDDGTVHAVGNIDPFSGAAVM 60 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 SRGIVGDRGGRA VQSPI KQAFALDDG+CLDDP S+PVY R+TP+G +Q+A Sbjct 61 SRGIVGDRGGRATVQSPIKKQAFALDDGTCLDDPDHSLPVYETRITPDGEVQLA 114 >gi|108797239|ref|YP_637436.1| nitrite reductase (NAD(P)H) large subunit, NirD [Mycobacterium sp. MCS] gi|119866324|ref|YP_936276.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium sp. KMS] gi|108767658|gb|ABG06380.1| Nitrite reductase (NAD(P)H) large subunit, NirD [Mycobacterium sp. MCS] gi|119692413|gb|ABL89486.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium sp. KMS] Length=123 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 79/104 (76%), Positives = 90/104 (87%), Gaps = 0/104 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT AC YD+LIP RGVGVLL DG+Q ALFRLDDGS+HA+GN+DPFSGAAVMSRGI GDRG Sbjct 18 WTVACRYDYLIPCRGVGVLLPDGAQAALFRLDDGSLHAIGNIDPFSGAAVMSRGITGDRG 77 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 GRA+VQSPI KQAFA DDGSCLDDP VS+PVY R T +G +++ Sbjct 78 GRAIVQSPIKKQAFAFDDGSCLDDPSVSLPVYRTRRTADGIVEI 121 >gi|126432862|ref|YP_001068553.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium sp. JLS] gi|126232662|gb|ABN96062.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium sp. JLS] Length=123 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/104 (76%), Positives = 90/104 (87%), Gaps = 0/104 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT AC YD+LIP RGVGVLL DG+Q ALFRLDDGS+HA+GN+DPFSGAAVMSRGI GDRG Sbjct 18 WTVACRYDYLIPCRGVGVLLPDGAQAALFRLDDGSLHAIGNIDPFSGAAVMSRGITGDRG 77 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 GRA+VQSPI KQAFA DDGSCLDDP VS+PVY R T +G +++ Sbjct 78 GRAIVQSPIKKQAFAFDDGSCLDDPSVSLPVYRTRRTADGIVEI 121 >gi|118467344|ref|YP_884841.1| nitrite reductase [NAD(P)H] small subunit [Mycobacterium smegmatis str. MC2 155] gi|118168631|gb|ABK69527.1| nitrite reductase [NAD(P)H] small subunit [Mycobacterium smegmatis str. MC2 155] Length=122 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 78/105 (75%), Positives = 88/105 (84%), Gaps = 0/105 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT ACAYD LIPGRGV VLL DGSQ ALF+LDDGSVHA+GN+DPFSGAAVMSRGI GDRG Sbjct 18 WTRACAYDFLIPGRGVAVLLADGSQAALFKLDDGSVHAIGNIDPFSGAAVMSRGITGDRG 77 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 G VQSPI KQAFAL DG CLDDP VS+PVY R++ +G +++A Sbjct 78 GCLTVQSPIKKQAFALVDGVCLDDPEVSLPVYRTRISADGFVEIA 122 >gi|145220990|ref|YP_001131668.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium gilvum PYR-GCK] gi|315442039|ref|YP_004074918.1| NAD(P)H-dependent nitrite reductase, small subunit [Mycobacterium sp. Spyr1] gi|145213476|gb|ABP42880.1| nitrite reductase (NAD(P)H), small subunit [Mycobacterium gilvum PYR-GCK] gi|315260342|gb|ADT97083.1| NAD(P)H-dependent nitrite reductase, small subunit [Mycobacterium sp. Spyr1] Length=119 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/109 (73%), Positives = 89/109 (82%), Gaps = 0/109 (0%) Query 5 NDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGI 64 N VW TAC YD LIP RGVGVLL +G Q ALFRLDDG++ AVGN+DPFSGAAVMSRGI Sbjct 9 NGTGVWITACRYDFLIPNRGVGVLLPEGEQAALFRLDDGTLCAVGNIDPFSGAAVMSRGI 68 Query 65 VGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 VGDRGGR VQSPI KQAFALDDGSCLD+ ++PVYP R+T +G +QV Sbjct 69 VGDRGGRLTVQSPIKKQAFALDDGSCLDNSDYALPVYPTRITEDGVVQV 117 >gi|333988880|ref|YP_004521494.1| nitrite reductase [Mycobacterium sp. JDM601] gi|333484849|gb|AEF34241.1| nitrite reductase [Mycobacterium sp. JDM601] Length=121 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 77/103 (75%), Positives = 84/103 (82%), Gaps = 1/103 (0%) Query 13 ACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRA 72 AC YD LIPG GVGVLLD+G Q ALFRLDDGSVHAV NVDPF AAV+SRGIVGDRGGR Sbjct 12 ACRYDQLIPGLGVGVLLDNGKQAALFRLDDGSVHAVCNVDPFFRAAVLSRGIVGDRGGRL 71 Query 73 MVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVAR 115 V SP+ KQAFA DDGSCLDDPR+SV VYP RV +G +Q+ R Sbjct 72 SVISPLKKQAFAFDDGSCLDDPRISVRVYPTRVV-DGYVQIGR 113 >gi|333921414|ref|YP_004494995.1| nitrite reductase (NAD(P)H), small subunit [Amycolicicoccus subflavus DQS3-9A1] gi|333483635|gb|AEF42195.1| Nitrite reductase (NAD(P)H), small subunit [Amycolicicoccus subflavus DQS3-9A1] Length=129 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 71/110 (65%), Positives = 80/110 (73%), Gaps = 1/110 (0%) Query 4 LNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRG 63 LN WTTACAYD L+P RGV VLL Q ALFRLDDGS+ AVGN+DPF+ AAVMSRG Sbjct 15 LNGSDGWTTACAYDFLLPNRGVAVLLPGNDQAALFRLDDGSLRAVGNIDPFAHAAVMSRG 74 Query 64 IVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 IVGDR G V SP+LKQ F+L+ G CLDD S+PVY RV EG +QV Sbjct 75 IVGDRKGEPTVASPLLKQVFSLESGICLDDAGHSLPVYQTRVV-EGLVQV 123 >gi|312140630|ref|YP_004007966.1| nitrite reductase small subunit nird [Rhodococcus equi 103S] gi|325675742|ref|ZP_08155426.1| nitrite reductase small subunit [Rhodococcus equi ATCC 33707] gi|311889969|emb|CBH49287.1| putative nitrite reductase small subunit NirD [Rhodococcus equi 103S] gi|325553713|gb|EGD23391.1| nitrite reductase small subunit [Rhodococcus equi ATCC 33707] Length=140 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/101 (67%), Positives = 76/101 (76%), Gaps = 1/101 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT+AC HLIPGRGV VLL G+Q ALFRL DGS+ AVGN+DP + AAVMSRG+VGDR Sbjct 26 WTSACTRSHLIPGRGVAVLLRGGAQAALFRLADGSLRAVGNIDPVARAAVMSRGLVGDRH 85 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGR 110 G V SP+LKQ F+L DG CLDD V +PVYP RV EGR Sbjct 86 GEPTVASPLLKQVFSLVDGRCLDDASVRLPVYPVRVV-EGR 125 >gi|226365837|ref|YP_002783620.1| nitrite reductase small subunit [Rhodococcus opacus B4] gi|226244327|dbj|BAH54675.1| nitrite reductase small subunit [Rhodococcus opacus B4] Length=134 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/96 (66%), Positives = 71/96 (74%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT+AC LIPG GV VLL G QVALF L+DGS+HAVGN+DPF AAVMSRG+VGDR Sbjct 27 WTSACPLSQLIPGLGVAVLLRGGEQVALFLLEDGSLHAVGNIDPFGRAAVMSRGLVGDRA 86 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 G V SP+LKQ F+L DG CLDD V +PVY RV Sbjct 87 GEPTVASPLLKQVFSLVDGRCLDDESVRLPVYDVRV 122 >gi|41409801|ref|NP_962637.1| NirD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398633|gb|AAS06253.1| NirD [Mycobacterium avium subsp. paratuberculosis K-10] Length=99 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/83 (76%), Positives = 70/83 (85%), Gaps = 0/83 (0%) Query 33 SQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLD 92 SQ ALFRLDDG+V AVGNVDPFSGAAV+SRGIVGDR G VQSPILKQAF+L+DG CLD Sbjct 10 SQAALFRLDDGTVRAVGNVDPFSGAAVLSRGIVGDRNGCPTVQSPILKQAFSLEDGICLD 69 Query 93 DPRVSVPVYPARVTPEGRIQVAR 115 DP VSVPVYP R+T + +QV R Sbjct 70 DPSVSVPVYPVRITADSYVQVGR 92 >gi|54026533|ref|YP_120775.1| putative nitrite reductase (NAD(P)H) subunit [Nocardia farcinica IFM 10152] gi|54018041|dbj|BAD59411.1| putative nitrite reductase (NAD(P)H) subunit [Nocardia farcinica IFM 10152] Length=131 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 64/96 (67%), Positives = 73/96 (77%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT AC D LIPGRGV VLL G Q ALF L DG+++AVGN+DPF AAVMSRGIVGDRG Sbjct 17 WTQACRLDFLIPGRGVAVLLRGGRQAALFLLPDGTLYAVGNIDPFGRAAVMSRGIVGDRG 76 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 G +V SP+LKQAF+L DG CLDD ++PVY RV Sbjct 77 GVPVVASPLLKQAFSLLDGHCLDDESAALPVYAVRV 112 >gi|296139103|ref|YP_003646346.1| nitrite reductase (NAD(P)H), small subunit [Tsukamurella paurometabola DSM 20162] gi|296027237|gb|ADG78007.1| nitrite reductase (NAD(P)H), small subunit [Tsukamurella paurometabola DSM 20162] Length=136 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/105 (62%), Positives = 77/105 (74%), Gaps = 0/105 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT AC L P RGV VLL DG+QVALFRL D S+ A+GN+DP AAVMSRGIVGDRG Sbjct 15 WTAACPVGRLEPLRGVAVLLPDGAQVALFRLADDSIRAIGNIDPIGRAAVMSRGIVGDRG 74 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 G +VQSP+ KQAF+L DG CLD P S+PVY R++ +G + VA Sbjct 75 GFPVVQSPLKKQAFSLLDGRCLDAPDFSIPVYDTRISLDGTVFVA 119 >gi|111023330|ref|YP_706302.1| nitrite reductase [NAD(P)H] small subunit [Rhodococcus jostii RHA1] gi|110822860|gb|ABG98144.1| nitrite reductase [NAD(P)H] small subunit [Rhodococcus jostii RHA1] Length=133 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/96 (65%), Positives = 70/96 (73%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT+AC LIPG GV VLL G QVALF L+DGS+ AVGN+DPF AAVMSRG+VGDR Sbjct 26 WTSACPLSQLIPGLGVAVLLRGGEQVALFLLEDGSLRAVGNIDPFGRAAVMSRGLVGDRA 85 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 G V SP+LKQ F+L DG CLDD V +PVY RV Sbjct 86 GEPTVASPLLKQVFSLVDGRCLDDESVRLPVYDVRV 121 >gi|229490979|ref|ZP_04384812.1| nitrite reductase [NAD(P)H], small subunit [Rhodococcus erythropolis SK121] gi|229322095|gb|EEN87883.1| nitrite reductase [NAD(P)H], small subunit [Rhodococcus erythropolis SK121] Length=137 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/96 (64%), Positives = 72/96 (75%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT+AC HLIPGRGV VLL G QVALF L+DG++ AV N DP+ AAVMSRG+VGDR Sbjct 18 WTSACPLSHLIPGRGVAVLLRGGEQVALFLLEDGTLRAVSNFDPYGRAAVMSRGLVGDRD 77 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 G +V SP+LKQAF+L DG LDD V++PVY RV Sbjct 78 GEPIVVSPLLKQAFSLVDGRALDDSSVALPVYGVRV 113 >gi|226305695|ref|YP_002765655.1| nitrite reductase small subunit [Rhodococcus erythropolis PR4] gi|226184812|dbj|BAH32916.1| putative nitrite reductase small subunit [Rhodococcus erythropolis PR4] Length=137 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/96 (64%), Positives = 72/96 (75%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT+AC HLIPGRGV VLL G QVALF L+DG++ AV N DP+ AAVMSRG+VGDR Sbjct 18 WTSACPLSHLIPGRGVAVLLRGGEQVALFLLEDGTLRAVSNFDPYGRAAVMSRGLVGDRD 77 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 G +V SP+LKQAF+L DG LDD V++PVY RV Sbjct 78 GEPIVVSPLLKQAFSLVDGRALDDSAVALPVYGVRV 113 >gi|331694956|ref|YP_004331195.1| nitrite reductase (NAD(P)H) small subunit [Pseudonocardia dioxanivorans CB1190] gi|326949645|gb|AEA23342.1| nitrite reductase (NAD(P)H), small subunit [Pseudonocardia dioxanivorans CB1190] Length=127 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 65/108 (61%), Positives = 75/108 (70%), Gaps = 2/108 (1%) Query 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVG 66 + VWT C D L P RGV LL G QVALFR DG+VHA+GN+DPFSGAAV+SRGIVG Sbjct 6 LTVWTAVCRVDQLEPERGVAALLG-GRQVALFRTHDGTVHAIGNIDPFSGAAVLSRGIVG 64 Query 67 DRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 DRGG V SP+ KQ F+L DG CLDD V V VY R+ G ++VA Sbjct 65 DRGGVPTVASPVYKQVFSLVDGRCLDDDTVRVDVYDVRLR-HGTVEVA 111 >gi|326382796|ref|ZP_08204486.1| nitrite reductase (NAD(P)H), small subunit [Gordonia neofelifaecis NRRL B-59395] gi|326198386|gb|EGD55570.1| nitrite reductase (NAD(P)H), small subunit [Gordonia neofelifaecis NRRL B-59395] Length=143 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/105 (60%), Positives = 74/105 (71%), Gaps = 0/105 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT AC D L P RGV VLL DG+QVALFRL D ++ AVGN+DP AAV+SRGIVGDR Sbjct 14 WTAACHLDRLEPLRGVAVLLPDGAQVALFRLADDTLRAVGNIDPIGRAAVISRGIVGDRN 73 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 G +V SP+ KQAF+L DG CLD V +PVY R+ +G + VA Sbjct 74 GFPVVASPLKKQAFSLIDGRCLDAAGVRIPVYGTRIALDGTVFVA 118 >gi|256374986|ref|YP_003098646.1| nitrite reductase (NAD(P)H), small subunit [Actinosynnema mirum DSM 43827] gi|255919289|gb|ACU34800.1| nitrite reductase (NAD(P)H), small subunit [Actinosynnema mirum DSM 43827] Length=130 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/89 (65%), Positives = 64/89 (72%), Gaps = 0/89 (0%) Query 14 CAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAM 73 C L P RGV LL DG+QVA+F DG +HA+GNVDPFSGAAV+SRGIVGDRGG + Sbjct 29 CDLSALQPERGVAALLPDGTQVAVFLTSDGGLHALGNVDPFSGAAVLSRGIVGDRGGVPV 88 Query 74 VQSPILKQAFALDDGSCLDDPRVSVPVYP 102 V SP+ KQAF L G CLDDP V V YP Sbjct 89 VISPLYKQAFELSTGRCLDDPAVVVESYP 117 >gi|320010925|gb|ADW05775.1| nitrite reductase (NAD(P)H), small subunit [Streptomyces flavogriseus ATCC 33331] Length=119 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/101 (58%), Positives = 67/101 (67%), Gaps = 0/101 (0%) Query 4 LNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRG 63 L D W T C + L PGRGV LL DG QVALF G VHA+ N DPF+GA V+SRG Sbjct 17 LADGDGWFTVCDRELLTPGRGVAALLPDGRQVALFVDRSGRVHAIDNRDPFTGAYVLSRG 76 Query 64 IVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPAR 104 +VG GGR V SP+LKQ F L+ G+CLDD VSVPV+ R Sbjct 77 LVGSAGGRPFVASPLLKQRFDLETGACLDDDEVSVPVFAVR 117 >gi|271967205|ref|YP_003341401.1| nitrite reductase (NAD(P)H) [Streptosporangium roseum DSM 43021] gi|270510380|gb|ACZ88658.1| nitrite reductase (NAD(P)H) [Streptosporangium roseum DSM 43021] Length=116 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/116 (51%), Positives = 77/116 (67%), Gaps = 4/116 (3%) Query 1 VTLLND--IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAA 58 +T+L++ VWT CAY L+P RG L+ Q+ALFR DG + A+GN DPFSGA Sbjct 1 MTVLSEATTTVWTAVCAYTDLLPERGACALVGR-HQIALFRTFDGELFAIGNRDPFSGAQ 59 Query 59 VMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 V+SRGIVG R G V SP+ K+ F+L G CLDDP V+VP YP RV +G ++V+ Sbjct 60 VLSRGIVGTRAGEPSVASPMHKEVFSLVTGVCLDDPAVAVPTYPIRVA-DGTVEVS 114 >gi|324999543|ref|ZP_08120655.1| nitrite reductase small subunit [Pseudonocardia sp. P1] Length=126 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/111 (55%), Positives = 70/111 (64%), Gaps = 2/111 (1%) Query 3 LLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSR 62 L W T C D L P RG L+ D QVALFR +VHAVGN+DPF+GA VMSR Sbjct 15 LTEQPTAWLTVCPLDRLWPDRGAAALVGD-VQVALFRRSGDTVHAVGNIDPFTGAGVMSR 73 Query 63 GIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 G+VGDRGG V SPI KQ F+L DG CLDD VS+P + RV G +QV Sbjct 74 GLVGDRGGEPTVASPIHKQVFSLRDGRCLDDDGVSLPAFAVRVV-GGSVQV 123 >gi|329934697|ref|ZP_08284738.1| nitrite/sulphite reductase small subunit [Streptomyces griseoaurantiacus M045] gi|329305519|gb|EGG49375.1| nitrite/sulphite reductase small subunit [Streptomyces griseoaurantiacus M045] Length=117 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/95 (56%), Positives = 61/95 (65%), Gaps = 0/95 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W T C L PGRGV LL DG Q ALFR G ++A+GN DPF+GAAV+SRG+ G Sbjct 20 WLTVCDLGTLTPGRGVAALLPDGRQAALFRDRSGRLYAIGNRDPFTGAAVLSRGLTGTHA 79 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPAR 104 GR V SP+LKQ F L+ G CLDD V VP Y R Sbjct 80 GRPYVASPLLKQRFDLESGQCLDDESVRVPAYEVR 114 >gi|239987454|ref|ZP_04708118.1| putative nitrite reductase small subunit [Streptomyces roseosporus NRRL 11379] gi|291444413|ref|ZP_06583803.1| nitrite reductase (NAD(P)H) small subunit [Streptomyces roseosporus NRRL 15998] gi|291347360|gb|EFE74264.1| nitrite reductase (NAD(P)H) small subunit [Streptomyces roseosporus NRRL 15998] Length=119 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/95 (57%), Positives = 64/95 (68%), Gaps = 0/95 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W T C LIPGRGV VLL DG Q A+F G V+A+GN DPF+GA V+SRG++G G Sbjct 23 WLTVCERGLLIPGRGVAVLLPDGDQAAVFMDRSGQVYAIGNRDPFTGAYVLSRGLLGSAG 82 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPAR 104 GR V SP+LKQ F L G+CLDD SVPV+ R Sbjct 83 GRPFVASPLLKQRFDLATGACLDDEEASVPVFAVR 117 >gi|86739508|ref|YP_479908.1| assimilatory nitrite reductase (NAD(P)H) small subunit [Frankia sp. CcI3] gi|86566370|gb|ABD10179.1| assimilatory nitrite reductase (NAD(P)H) small subunit [Frankia sp. CcI3] Length=114 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/110 (56%), Positives = 74/110 (68%), Gaps = 2/110 (1%) Query 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGD 67 +WT CA D L P RGV L++ G+QVA+FRL DG V AVGN DP A V+SRG+VG Sbjct 1 MIWTDICALDDLTPDRGVAALVN-GAQVAIFRLSDGPVLAVGNADPIGLANVLSRGLVGS 59 Query 68 RGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 RG RA+V SP+ KQAF L G CLD V +PVYP +V +GR+ V VA Sbjct 60 RGDRAVVFSPLHKQAFDLATGECLDAEGVRIPVYPVQVQ-DGRVLVGPVA 108 >gi|269126642|ref|YP_003300012.1| nitrite reductase (NAD(P)H) small subunit [Thermomonospora curvata DSM 43183] gi|268311600|gb|ACY97974.1| nitrite reductase (NAD(P)H), small subunit [Thermomonospora curvata DSM 43183] Length=124 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/105 (53%), Positives = 70/105 (67%), Gaps = 1/105 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W C YD L+P RGV L++ G QVA+FR DG + A+ N DPFSGA V++RGIVG RG Sbjct 19 WHQVCRYDDLLPERGVCALVE-GVQVAIFRTFDGELFALSNFDPFSGAYVIARGIVGTRG 77 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVA 114 G V SP+ KQ F L G CLDD +V++P + R TP G ++VA Sbjct 78 GIPTVASPMYKQVFDLRTGRCLDDGQVALPTFRIRRTPAGGVEVA 122 >gi|288917313|ref|ZP_06411681.1| nitrite reductase (NAD(P)H), small subunit [Frankia sp. EUN1f] gi|288351335|gb|EFC85544.1| nitrite reductase (NAD(P)H), small subunit [Frankia sp. EUN1f] Length=108 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/107 (52%), Positives = 69/107 (65%), Gaps = 2/107 (1%) Query 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVG 66 + WTT C YD L+P RG L+ D Q+ALFR DG + A+GN DPF+GA V++RGIVG Sbjct 1 MTTWTTVCRYDDLLPERGAAALVGD-LQLALFRCHDGQLFAIGNQDPFTGAWVLARGIVG 59 Query 67 DRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 R R V SP+ KQ F L G CLD V+VPVY R + EG ++V Sbjct 60 SRAQRRTVASPLHKQVFDLRTGECLDAEGVTVPVYEVR-SREGMVEV 105 >gi|289771776|ref|ZP_06531154.1| nitrite reductase small subunit NirC [Streptomyces lividans TK24] gi|289701975|gb|EFD69404.1| nitrite reductase small subunit NirC [Streptomyces lividans TK24] Length=133 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/92 (57%), Positives = 61/92 (67%), Gaps = 0/92 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W TAC L+PGRGV LL DG QVALFR DG ++A+ N DPF+GAAV+SRG+ G Sbjct 25 WFTACDLGALLPGRGVAALLPDGGQVALFRDRDGGLYAIDNRDPFTGAAVLSRGLTGTHQ 84 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVY 101 GR V SP+LKQ F L G CLDD + V Y Sbjct 85 GRPFVASPLLKQRFDLTTGECLDDAAMRVETY 116 >gi|21220951|ref|NP_626730.1| nitrite reductase small subunit NirC [Streptomyces coelicolor A3(2)] gi|6759583|emb|CAB69776.1| putative nitrite reductase small subunit NirC [Streptomyces coelicolor A3(2)] Length=131 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/92 (57%), Positives = 61/92 (67%), Gaps = 0/92 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W TAC L+PGRGV LL DG QVALFR DG ++A+ N DPF+GAAV+SRG+ G Sbjct 23 WFTACDLGALLPGRGVAALLPDGGQVALFRDRDGGLYAIDNRDPFTGAAVLSRGLTGTHQ 82 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVY 101 GR V SP+LKQ F L G CLDD + V Y Sbjct 83 GRPFVASPLLKQRFDLTTGECLDDAAMRVETY 114 >gi|169630602|ref|YP_001704251.1| nitrite reductase [Mycobacterium abscessus ATCC 19977] gi|169242569|emb|CAM63597.1| Probable nitrite reductase [Mycobacterium abscessus] Length=110 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/97 (55%), Positives = 65/97 (68%), Gaps = 1/97 (1%) Query 17 DHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQS 76 D L PGRG VLL D Q ALF + G ++AVGN+DPF AAVMSRG+ GDRGG V S Sbjct 2 DSLTPGRGAAVLLADDVQAALFLMPSGELYAVGNIDPFGQAAVMSRGLTGDRGGEPTVAS 61 Query 77 PILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 P+LKQ F+L DG CLDD +PV+ RV G +++ Sbjct 62 PLLKQVFSLIDGRCLDDASRRLPVFEVRVI-NGNVEI 97 >gi|345014924|ref|YP_004817278.1| nitrite reductase (NAD(P)H), small subunit [Streptomyces violaceusniger Tu 4113] gi|344041273|gb|AEM86998.1| nitrite reductase (NAD(P)H), small subunit [Streptomyces violaceusniger Tu 4113] Length=123 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/117 (50%), Positives = 70/117 (60%), Gaps = 5/117 (4%) Query 1 VTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVM 60 V LL D Q W C L PGRGV LL DG+QVA+F G +A+ N DPF+GA V+ Sbjct 12 VELLID-QRWFAVCELTDLTPGRGVAALLPDGTQVAVFLDRSGRAYAIANRDPFTGAYVL 70 Query 61 SRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 SRG++G GGR SP+LKQ F L+ G CLDD V+V Y R R + ARVA Sbjct 71 SRGLLGSSGGRPFAASPLLKQRFDLETGRCLDDETVAVQAYVTRT----RDRTARVA 123 >gi|162456776|ref|YP_001619143.1| nitrite reductase (NAD(P)H) [Sorangium cellulosum 'So ce 56'] gi|161167358|emb|CAN98663.1| Nitrite reductase (NAD(P)H) [Sorangium cellulosum 'So ce 56'] Length=132 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 54/107 (51%), Positives = 71/107 (67%), Gaps = 3/107 (2%) Query 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGS-VHAVGNVDPFSGAAVMSRGIVG 66 QVW C + +IP GV L+ Q+AL R+ +G V+A+ N DPFS A V+SRGIVG Sbjct 17 QVWVDVCGVEDIIPNTGVCALVGK-RQIALVRVGEGEEVYAISNFDPFSKAFVLSRGIVG 75 Query 67 DRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 D+GG + SPI KQ F L G CLDDP VS+PVYP R+ +GR+++ Sbjct 76 DKGGVPKIASPIYKQNFDLRSGRCLDDPGVSIPVYPLRIR-DGRVEI 121 >gi|328882325|emb|CCA55564.1| Nitrite reductase [NAD(P)H] small subunit [Streptomyces venezuelae ATCC 10712] Length=115 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 51/96 (54%), Positives = 61/96 (64%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W C L PGRGV LL DG Q A+FR G +A+ N DPF+GA V+SRG+VG Sbjct 19 WLAVCEEARLTPGRGVAALLPDGRQAAVFRDRAGRTYAIDNRDPFTGAQVLSRGLVGSAD 78 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 GR V SP+LKQ F L+ G CLDD V+V V+P RV Sbjct 79 GRPFVASPLLKQRFDLETGRCLDDDEVAVTVFPVRV 114 >gi|134100338|ref|YP_001105999.1| nitrite reductase (NAD(P)H) small subunit [Saccharopolyspora erythraea NRRL 2338] gi|291007691|ref|ZP_06565664.1| nitrite reductase (NAD(P)H) small subunit [Saccharopolyspora erythraea NRRL 2338] gi|133912961|emb|CAM03074.1| nitrite reductase (NAD(P)H) small subunit [Saccharopolyspora erythraea NRRL 2338] Length=107 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/95 (56%), Positives = 62/95 (66%), Gaps = 1/95 (1%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W CAY+ L P GV LL D + VALFR DG + AVGNVDP+ GA V+SRGIVGDR Sbjct 3 WQQICAYESLSPEYGVPALLGDHA-VALFRTGDGELFAVGNVDPYCGAGVISRGIVGDRE 61 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPAR 104 G V SP+LKQ F+L G CLDDP +P + R Sbjct 62 GEPTVASPMLKQVFSLRTGECLDDPGTRLPTFAVR 96 >gi|284029382|ref|YP_003379313.1| nitrite reductase (NAD(P)H) small subunit [Kribbella flavida DSM 17836] gi|283808675|gb|ADB30514.1| nitrite reductase (NAD(P)H), small subunit [Kribbella flavida DSM 17836] Length=113 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/103 (55%), Positives = 67/103 (66%), Gaps = 2/103 (1%) Query 11 TTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGG 70 T C Y L+P RGV LL D Q+ALFR DG+V A+ N+DPF GA V+SRGIVG RG Sbjct 8 TVVCGYHELLPERGVAALLGD-RQIALFRTYDGAVFALDNLDPFCGANVLSRGIVGSRGD 66 Query 71 RAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQV 113 V SP+ KQ F L G CLDDP V+V YP +V +GR+ V Sbjct 67 VPTVASPMFKQVFDLRTGVCLDDPDVAVAAYPVQVV-DGRVLV 108 >gi|111220812|ref|YP_711606.1| nitrite reductase small subunit [Frankia alni ACN14a] gi|111148344|emb|CAJ60016.1| nitrite reductase, small subunit [Frankia alni ACN14a] Length=113 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/108 (55%), Positives = 70/108 (65%), Gaps = 2/108 (1%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 WT CA + L P RG G L+D G+QVA+FRL DG V AVGN DP S A V+ RG+VG RG Sbjct 3 WTDVCALEDLTPDRGAGALVD-GAQVAVFRLSDGPVVAVGNTDPISRANVLCRGLVGSRG 61 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVA 117 RA+V SP+ KQAF L G CLD V +PV+P V GR+ V A Sbjct 62 ERAVVFSPLHKQAFDLVTGVCLDAEGVCIPVHPVEVR-AGRVLVGPAA 108 >gi|297199519|ref|ZP_06916916.1| nitrite reductase [NAD(P)H], small subunit [Streptomyces sviceus ATCC 29083] gi|197712934|gb|EDY56968.1| nitrite reductase [NAD(P)H], small subunit [Streptomyces sviceus ATCC 29083] Length=116 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/95 (53%), Positives = 58/95 (62%), Gaps = 0/95 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W C L+PGRGV LL DG Q ALFR G ++AV N DPF GAAV+SRG+ G Sbjct 20 WFAVCELARLLPGRGVAALLPDGRQAALFRDRAGRLYAVDNRDPFGGAAVLSRGLTGTHQ 79 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPAR 104 GR V SP+LKQ F L+ G CLDD V + Y R Sbjct 80 GRPFVASPLLKQRFDLETGQCLDDESVRIATYEVR 114 >gi|302551252|ref|ZP_07303594.1| nitrite reductase [NAD(P)H], small subunit [Streptomyces viridochromogenes DSM 40736] gi|302468870|gb|EFL31963.1| nitrite reductase [NAD(P)H], small subunit [Streptomyces viridochromogenes DSM 40736] Length=116 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/96 (53%), Positives = 58/96 (61%), Gaps = 0/96 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W T C L+PGRGV LL DG Q A+FR G + A+ N DPF+GAAV+SRG+ G Sbjct 20 WFTVCDLSTLLPGRGVAALLPDGHQAAIFRDRSGELFAIDNRDPFTGAAVLSRGLTGTHR 79 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARV 105 GR V SP+LKQ F L G CLDD V V Y R Sbjct 80 GRPFVASPLLKQRFDLASGQCLDDEEVRVTAYQVRT 115 >gi|297194498|ref|ZP_06911896.1| nitrite reductase (NAD(P)H) small subunit [Streptomyces pristinaespiralis ATCC 25486] gi|197718692|gb|EDY62600.1| nitrite reductase (NAD(P)H) small subunit [Streptomyces pristinaespiralis ATCC 25486] Length=119 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/97 (53%), Positives = 60/97 (62%), Gaps = 0/97 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W C L PGRGV LL DG QVALF DG+ +A+ N DPF+GA V++RG+VG Sbjct 23 WLAVCPLSRLTPGRGVAALLPDGRQVALFLDRDGAPYAIDNRDPFTGAQVLARGLVGSAA 82 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVT 106 GR V SP+LKQ F L G CLDD V+V Y RV Sbjct 83 GRPFVASPLLKQRFDLSTGRCLDDESVAVAAYEVRVA 119 >gi|326779500|ref|ZP_08238765.1| putative nitrite reductase small subunit [Streptomyces cf. griseus XylebKG-1] gi|326659833|gb|EGE44679.1| putative nitrite reductase small subunit [Streptomyces griseus XylebKG-1] Length=121 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/97 (54%), Positives = 63/97 (65%), Gaps = 0/97 (0%) Query 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGD 67 + W T C L PGRGV VLL DG Q A+F G V+A+GN DPF+GA V+SRG++G Sbjct 23 EEWLTVCDRALLTPGRGVAVLLPDGDQAAVFTDRAGRVYAIGNRDPFTGAYVLSRGLLGS 82 Query 68 RGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPAR 104 GGR V SP+LKQ F L G CLDD +VPV+ R Sbjct 83 AGGRPFVASPLLKQRFDLATGVCLDDEGAAVPVFAVR 119 >gi|291439785|ref|ZP_06579175.1| nitrite reductase small subunit NirC [Streptomyces ghanaensis ATCC 14672] gi|291342680|gb|EFE69636.1| nitrite reductase small subunit NirC [Streptomyces ghanaensis ATCC 14672] Length=122 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/92 (55%), Positives = 59/92 (65%), Gaps = 0/92 (0%) Query 10 WTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRG 69 W T C L+PGRGV LL DG QVA+F G +HA+ N DPF+GAAV+SRG+ G Sbjct 20 WFTVCDLSALLPGRGVAALLPDGRQVAVFADRAGRLHAIDNRDPFTGAAVLSRGLTGTHR 79 Query 70 GRAMVQSPILKQAFALDDGSCLDDPRVSVPVY 101 GR V SP+LKQ F L+ G CLDD V V Y Sbjct 80 GRPFVASPLLKQRFDLESGQCLDDAAVRVTAY 111 Lambda K H 0.322 0.140 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129536132814 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40