BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0257
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839638|ref|NP_334675.1| hypothetical protein MT0270.1 [Myco... 246 1e-63
gi|298523725|ref|ZP_07011134.1| conserved hypothetical protein [... 243 5e-63
gi|31791435|ref|NP_853928.1| hypothetical protein Mb0263 [Mycoba... 146 1e-33
gi|289441634|ref|ZP_06431378.1| LOW QUALITY PROTEIN: conserved h... 131 4e-29
gi|289568165|ref|ZP_06448392.1| conserved hypothetical protein [... 48.5 3e-04
gi|15840976|ref|NP_336013.1| hypothetical protein MT1560.1 [Myco... 37.0 1.1
gi|327280652|ref|XP_003225066.1| PREDICTED: sphingosine kinase 2... 35.0 3.8
gi|289447120|ref|ZP_06436864.1| LOW QUALITY PROTEIN: conserved h... 34.3 6.9
>gi|15839638|ref|NP_334675.1| hypothetical protein MT0270.1 [Mycobacterium tuberculosis CDC1551]
gi|57116709|ref|YP_177620.1| hypothetical protein Rv0257 [Mycobacterium tuberculosis H37Rv]
gi|148660022|ref|YP_001281545.1| hypothetical protein MRA_0265A [Mycobacterium tuberculosis H37Ra]
18 more sequence titles
Length=124
Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%)
Query 1 MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV 60
MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV
Sbjct 1 MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV 60
Query 61 ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP 120
ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP
Sbjct 61 ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP 120
Query 121 SCRA 124
SCRA
Sbjct 121 SCRA 124
>gi|298523725|ref|ZP_07011134.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298493519|gb|EFI28813.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=124
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%)
Query 1 MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV 60
MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGK+IGMQSVDLHV
Sbjct 1 MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKSIGMQSVDLHV 60
Query 61 ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP 120
ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP
Sbjct 61 ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP 120
Query 121 SCRA 124
SCRA
Sbjct 121 SCRA 124
>gi|31791435|ref|NP_853928.1| hypothetical protein Mb0263 [Mycobacterium bovis AF2122/97]
gi|121636170|ref|YP_976393.1| hypothetical protein BCG_0295 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224988643|ref|YP_002643330.1| hypothetical protein JTY_0264 [Mycobacterium bovis BCG str. Tokyo
172]
6 more sequence titles
Length=72
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)
Query 53 MQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIG 112
MQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIG
Sbjct 1 MQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIG 60
Query 113 GGVDLQKPSCRA 124
GGVDLQKPSCRA
Sbjct 61 GGVDLQKPSCRA 72
>gi|289441634|ref|ZP_06431378.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T46]
gi|289414553|gb|EFD11793.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T46]
Length=99
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/101 (73%), Positives = 76/101 (76%), Gaps = 2/101 (1%)
Query 24 GSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTCVTAL 83
GSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTC
Sbjct 1 GSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTCGARR 60
Query 84 GDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKPSCRA 124
I A G PAVLFPSW G+ + +PSCRA
Sbjct 61 HPICPALRK--GGGPAVLFPSWRGCAGLEAALTCIQPSCRA 99
>gi|289568165|ref|ZP_06448392.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289541918|gb|EFD45567.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=22
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/22 (100%), Positives = 22/22 (100%), Gaps = 0/22 (0%)
Query 1 MTRVSWLPDRCLPRLPACGRGL 22
MTRVSWLPDRCLPRLPACGRGL
Sbjct 1 MTRVSWLPDRCLPRLPACGRGL 22
>gi|15840976|ref|NP_336013.1| hypothetical protein MT1560.1 [Mycobacterium tuberculosis CDC1551]
gi|148822735|ref|YP_001287489.1| hypothetical protein TBFG_11544 [Mycobacterium tuberculosis F11]
gi|167969322|ref|ZP_02551599.1| hypothetical protein MtubH3_15370 [Mycobacterium tuberculosis
H37Ra]
16 more sequence titles
Length=139
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/52 (43%), Positives = 30/52 (58%), Gaps = 0/52 (0%)
Query 36 DSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIR 87
S RL + S G + + +L + + + GR+HR VATVTCVTA GD R
Sbjct 6 KSRRLVSEHSVLGSDPSRRRCNLIWLKLVRTEGRAHRRVATVTCVTAPGDTR 57
>gi|327280652|ref|XP_003225066.1| PREDICTED: sphingosine kinase 2-like [Anolis carolinensis]
Length=512
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/101 (27%), Positives = 41/101 (41%), Gaps = 10/101 (9%)
Query 15 LPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTV 74
L ACG G L G+ G P R S + +LH++R +P HRTV
Sbjct 5 LGACGEGSETLLHGEFGAYPPKGTRYALS---------LTRTELHIQRLVPKPDTDHRTV 55
Query 75 ATVTCVTALGDIRSAQLSATGAWPAVL-FPSWSWLCGIGGG 114
+ V +RS ++ + A+ V +P +G G
Sbjct 56 VRLVDVVGCHTMRSHTVANSSAFFCVYSYPLKKKKVAVGSG 96
>gi|289447120|ref|ZP_06436864.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis CPHL_A]
gi|289420078|gb|EFD17279.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis CPHL_A]
Length=139
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/22 (73%), Positives = 18/22 (82%), Gaps = 0/22 (0%)
Query 66 SRGRSHRTVATVTCVTALGDIR 87
+ GR+HR VATVTCVTA GD R
Sbjct 36 TEGRAHRRVATVTCVTAPGDTR 57
Lambda K H
0.319 0.135 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130872486112
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40