BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0257

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839638|ref|NP_334675.1|  hypothetical protein MT0270.1 [Myco...   246    1e-63
gi|298523725|ref|ZP_07011134.1|  conserved hypothetical protein [...   243    5e-63
gi|31791435|ref|NP_853928.1|  hypothetical protein Mb0263 [Mycoba...   146    1e-33
gi|289441634|ref|ZP_06431378.1|  LOW QUALITY PROTEIN: conserved h...   131    4e-29
gi|289568165|ref|ZP_06448392.1|  conserved hypothetical protein [...  48.5    3e-04
gi|15840976|ref|NP_336013.1|  hypothetical protein MT1560.1 [Myco...  37.0    1.1  
gi|327280652|ref|XP_003225066.1|  PREDICTED: sphingosine kinase 2...  35.0    3.8  
gi|289447120|ref|ZP_06436864.1|  LOW QUALITY PROTEIN: conserved h...  34.3    6.9  


>gi|15839638|ref|NP_334675.1| hypothetical protein MT0270.1 [Mycobacterium tuberculosis CDC1551]
 gi|57116709|ref|YP_177620.1| hypothetical protein Rv0257 [Mycobacterium tuberculosis H37Rv]
 gi|148660022|ref|YP_001281545.1| hypothetical protein MRA_0265A [Mycobacterium tuberculosis H37Ra]
 18 more sequence titles
 Length=124

 Score =  246 bits (627),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV  60
            MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV
Sbjct  1    MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV  60

Query  61   ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP  120
            ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP
Sbjct  61   ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP  120

Query  121  SCRA  124
            SCRA
Sbjct  121  SCRA  124


>gi|298523725|ref|ZP_07011134.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298493519|gb|EFI28813.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=124

 Score =  243 bits (621),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHV  60
            MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGK+IGMQSVDLHV
Sbjct  1    MTRVSWLPDRCLPRLPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKSIGMQSVDLHV  60

Query  61   ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP  120
            ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP
Sbjct  61   ERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKP  120

Query  121  SCRA  124
            SCRA
Sbjct  121  SCRA  124


>gi|31791435|ref|NP_853928.1| hypothetical protein Mb0263 [Mycobacterium bovis AF2122/97]
 gi|121636170|ref|YP_976393.1| hypothetical protein BCG_0295 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224988643|ref|YP_002643330.1| hypothetical protein JTY_0264 [Mycobacterium bovis BCG str. Tokyo 
172]
 6 more sequence titles
 Length=72

 Score =  146 bits (369),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)

Query  53   MQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIG  112
            MQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIG
Sbjct  1    MQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIRSAQLSATGAWPAVLFPSWSWLCGIG  60

Query  113  GGVDLQKPSCRA  124
            GGVDLQKPSCRA
Sbjct  61   GGVDLQKPSCRA  72


>gi|289441634|ref|ZP_06431378.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T46]
 gi|289414553|gb|EFD11793.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T46]
Length=99

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 73/101 (73%), Positives = 76/101 (76%), Gaps = 2/101 (1%)

Query  24   GSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTCVTAL  83
            GSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTC    
Sbjct  1    GSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTCGARR  60

Query  84   GDIRSAQLSATGAWPAVLFPSWSWLCGIGGGVDLQKPSCRA  124
              I  A     G  PAVLFPSW    G+   +   +PSCRA
Sbjct  61   HPICPALRK--GGGPAVLFPSWRGCAGLEAALTCIQPSCRA  99


>gi|289568165|ref|ZP_06448392.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289541918|gb|EFD45567.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=22

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%), Gaps = 0/22 (0%)

Query  1   MTRVSWLPDRCLPRLPACGRGL  22
           MTRVSWLPDRCLPRLPACGRGL
Sbjct  1   MTRVSWLPDRCLPRLPACGRGL  22


>gi|15840976|ref|NP_336013.1| hypothetical protein MT1560.1 [Mycobacterium tuberculosis CDC1551]
 gi|148822735|ref|YP_001287489.1| hypothetical protein TBFG_11544 [Mycobacterium tuberculosis F11]
 gi|167969322|ref|ZP_02551599.1| hypothetical protein MtubH3_15370 [Mycobacterium tuberculosis 
H37Ra]
 16 more sequence titles
 Length=139

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 22/52 (43%), Positives = 30/52 (58%), Gaps = 0/52 (0%)

Query  36  DSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTVATVTCVTALGDIR  87
            S RL +  S  G +   +  +L   + + + GR+HR VATVTCVTA GD R
Sbjct  6   KSRRLVSEHSVLGSDPSRRRCNLIWLKLVRTEGRAHRRVATVTCVTAPGDTR  57


>gi|327280652|ref|XP_003225066.1| PREDICTED: sphingosine kinase 2-like [Anolis carolinensis]
Length=512

 Score = 35.0 bits (79),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 27/101 (27%), Positives = 41/101 (41%), Gaps = 10/101 (9%)

Query  15   LPACGRGLRGSLPGDSGGTAPDSHRLPASSSPDGKNIGMQSVDLHVERHLPSRGRSHRTV  74
            L ACG G    L G+ G   P   R   S         +   +LH++R +P     HRTV
Sbjct  5    LGACGEGSETLLHGEFGAYPPKGTRYALS---------LTRTELHIQRLVPKPDTDHRTV  55

Query  75   ATVTCVTALGDIRSAQLSATGAWPAVL-FPSWSWLCGIGGG  114
              +  V     +RS  ++ + A+  V  +P       +G G
Sbjct  56   VRLVDVVGCHTMRSHTVANSSAFFCVYSYPLKKKKVAVGSG  96


>gi|289447120|ref|ZP_06436864.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis CPHL_A]
 gi|289420078|gb|EFD17279.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis CPHL_A]
Length=139

 Score = 34.3 bits (77),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 16/22 (73%), Positives = 18/22 (82%), Gaps = 0/22 (0%)

Query  66  SRGRSHRTVATVTCVTALGDIR  87
           + GR+HR VATVTCVTA GD R
Sbjct  36  TEGRAHRRVATVTCVTAPGDTR  57



Lambda     K      H
   0.319    0.135    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130872486112




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40