BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0258c
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607399|ref|NP_214772.1| hypothetical protein Rv0258c [Mycob... 305 2e-81
gi|340625295|ref|YP_004743747.1| hypothetical protein MCAN_02651... 303 5e-81
gi|289572836|ref|ZP_06453063.1| conserved hypothetical protein [... 302 1e-80
gi|240168478|ref|ZP_04747137.1| hypothetical protein MkanA1_0414... 285 2e-75
gi|118616897|ref|YP_905229.1| hypothetical protein MUL_1181 [Myc... 280 4e-74
gi|339293319|gb|AEJ45430.1| hypothetical protein CCDC5079_0240 [... 270 3e-71
gi|41409802|ref|NP_962638.1| hypothetical protein MAP3704c [Myco... 263 7e-69
gi|296167536|ref|ZP_06849888.1| conserved hypothetical protein [... 261 3e-68
gi|342859269|ref|ZP_08715923.1| hypothetical protein MCOL_10333 ... 259 7e-68
gi|254820414|ref|ZP_05225415.1| hypothetical protein MintA_10816... 258 2e-67
gi|118463451|ref|YP_884023.1| hypothetical protein MAV_4902 [Myc... 239 1e-61
gi|289764376|ref|ZP_06523754.1| conserved hypothetical protein [... 145 3e-33
gi|289568161|ref|ZP_06448388.1| predicted protein [Mycobacterium... 129 1e-28
gi|300784198|ref|YP_003764489.1| TetR family transcriptional reg... 107 5e-22
gi|256379706|ref|YP_003103366.1| TetR family transcriptional reg... 104 4e-21
gi|257056790|ref|YP_003134622.1| transcriptional regulator [Sacc... 100 9e-20
gi|302525437|ref|ZP_07277779.1| transcriptional regulator [Strep... 98.6 3e-19
gi|134102203|ref|YP_001107864.1| TetR family transcriptional reg... 95.5 2e-18
gi|331696675|ref|YP_004332914.1| regulatory protein TetR [Pseudo... 79.3 2e-13
gi|340360295|ref|ZP_08682765.1| TetR family transcriptional regu... 77.4 6e-13
gi|145595694|ref|YP_001159991.1| regulatory protein TetR [Salini... 72.8 1e-11
gi|325001836|ref|ZP_08122948.1| TetR family transcriptional regu... 72.4 2e-11
gi|340358589|ref|ZP_08681102.1| regulatory protein, TetR [Actino... 72.0 3e-11
gi|320534739|ref|ZP_08035169.1| hypothetical protein HMPREF9057_... 70.9 6e-11
gi|159038944|ref|YP_001538197.1| TetR family transcriptional reg... 69.3 2e-10
gi|330469257|ref|YP_004407000.1| TetR family transcriptional reg... 68.9 2e-10
gi|329948053|ref|ZP_08294954.1| transcriptional regulator, TetR ... 67.4 6e-10
gi|320533955|ref|ZP_08034519.1| transcriptional regulator, TetR ... 67.4 7e-10
gi|315504646|ref|YP_004083533.1| regulatory protein TetR [Microm... 67.0 8e-10
gi|302868884|ref|YP_003837521.1| regulatory protein TetR [Microm... 67.0 8e-10
gi|118467564|ref|YP_889528.1| transcriptional regulator [Mycobac... 67.0 8e-10
gi|325068583|ref|ZP_08127256.1| transcriptional regulator [Actin... 67.0 1e-09
gi|329946943|ref|ZP_08294355.1| transcriptional regulator, TetR ... 67.0 1e-09
gi|326772641|ref|ZP_08231925.1| transcriptional regulator, TetR ... 66.6 1e-09
gi|333921261|ref|YP_004494842.1| TetR family transcriptional reg... 65.9 2e-09
gi|343522985|ref|ZP_08759950.1| transcriptional regulator, TetR ... 65.5 2e-09
gi|219664383|gb|ACL31233.1| TetR family putative regulatory prot... 65.5 3e-09
gi|271970306|ref|YP_003344502.1| TetR family transcriptional reg... 64.3 6e-09
gi|326773554|ref|ZP_08232837.1| transcriptional regulator, TetR ... 63.5 1e-08
gi|343522319|ref|ZP_08759285.1| transcriptional regulator, TetR ... 63.2 1e-08
gi|118468038|ref|YP_888058.1| transcriptional regulator [Mycobac... 61.2 4e-08
gi|258651937|ref|YP_003201093.1| TetR family transcriptional reg... 61.2 5e-08
gi|284034271|ref|YP_003384202.1| TetR family transcriptional reg... 60.8 7e-08
gi|296270220|ref|YP_003652852.1| TetR family transcriptional reg... 60.1 1e-07
gi|118467741|ref|YP_886535.1| transcriptional regulator [Mycobac... 59.3 2e-07
gi|120404273|ref|YP_954102.1| TetR family transcriptional regula... 59.3 2e-07
gi|269955224|ref|YP_003325013.1| TetR family transcriptional reg... 58.9 3e-07
gi|302530381|ref|ZP_07282723.1| predicted protein [Streptomyces ... 58.5 3e-07
gi|332669392|ref|YP_004452400.1| regulatory protein TetR [Cellul... 58.5 3e-07
gi|325066594|ref|ZP_08125267.1| TetR family transcriptional regu... 58.2 4e-07
>gi|15607399|ref|NP_214772.1| hypothetical protein Rv0258c [Mycobacterium tuberculosis H37Rv]
gi|15839640|ref|NP_334677.1| hypothetical protein MT0271 [Mycobacterium tuberculosis CDC1551]
gi|31791436|ref|NP_853929.1| hypothetical protein Mb0264c [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=151
Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF
Sbjct 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR
Sbjct 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG
Sbjct 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
>gi|340625295|ref|YP_004743747.1| hypothetical protein MCAN_02651 [Mycobacterium canettii CIPT
140010059]
gi|340003485|emb|CCC42605.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=151
Score = 303 bits (776), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/151 (99%), Positives = 151/151 (100%), Gaps = 0/151 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
MARSQEPSRGLLDPVAKMLRLPFGTP+FIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF
Sbjct 1 MARSQEPSRGLLDPVAKMLRLPFGTPEFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR
Sbjct 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG
Sbjct 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
>gi|289572836|ref|ZP_06453063.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289537267|gb|EFD41845.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=151
Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/151 (99%), Positives = 150/151 (99%), Gaps = 0/151 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
MARSQ PSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF
Sbjct 1 MARSQAPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR
Sbjct 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG
Sbjct 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
>gi|240168478|ref|ZP_04747137.1| hypothetical protein MkanA1_04147 [Mycobacterium kansasii ATCC
12478]
Length=151
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/151 (92%), Positives = 145/151 (97%), Gaps = 0/151 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
MA QEPSRGLLDPVAKMLRLPF TP+FI+KIVTGSVNQVGRRTLY+LITTWDAAGGGPF
Sbjct 1 MAHHQEPSRGLLDPVAKMLRLPFSTPEFIDKIVTGSVNQVGRRTLYMLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIA+TGLAKTAEIVQ+MFIGPVFNPLLKMLG DKIA+RASLCA+QLVGLGIMRYGVR
Sbjct 61 AASAIASTGLAKTAEIVQAMFIGPVFNPLLKMLGVDKIAVRASLCASQLVGLGIMRYGVR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
SEPLHSMSVE LVDAIGPTMQRYLVGDI RG
Sbjct 121 SEPLHSMSVEALVDAIGPTMQRYLVGDISRG 151
>gi|118616897|ref|YP_905229.1| hypothetical protein MUL_1181 [Mycobacterium ulcerans Agy99]
gi|183980546|ref|YP_001848837.1| hypothetical protein MMAR_0518 [Mycobacterium marinum M]
gi|118569007|gb|ABL03758.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183173872|gb|ACC38982.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=151
Score = 280 bits (716), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/151 (89%), Positives = 146/151 (97%), Gaps = 0/151 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
MA ++EPSRGLLDPVAKMLRLPFGTP+FI+KIV GSVNQVGRRTLY+LITTWDAAGGGPF
Sbjct 1 MANNEEPSRGLLDPVAKMLRLPFGTPEFIDKIVAGSVNQVGRRTLYMLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASA+A+TGLAKTAEIVQSMFIGP+FNPLLKMLGADKIA+RASLCA+QLVGLGIMRYG+R
Sbjct 61 AASAVASTGLAKTAEIVQSMFIGPIFNPLLKMLGADKIAVRASLCASQLVGLGIMRYGLR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGRG 151
SEP+HSMSV+ LVDAIGPTMQ YLVGDI RG
Sbjct 121 SEPMHSMSVDALVDAIGPTMQHYLVGDISRG 151
>gi|339293319|gb|AEJ45430.1| hypothetical protein CCDC5079_0240 [Mycobacterium tuberculosis
CCDC5079]
gi|339296966|gb|AEJ49076.1| hypothetical protein CCDC5180_0239 [Mycobacterium tuberculosis
CCDC5180]
Length=134
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 18 MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 77
MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV
Sbjct 1 MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 60
Query 78 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG
Sbjct 61 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 120
Query 138 PTMQRYLVGDIGRG 151
PTMQRYLVGDIGRG
Sbjct 121 PTMQRYLVGDIGRG 134
>gi|41409802|ref|NP_962638.1| hypothetical protein MAP3704c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254777342|ref|ZP_05218858.1| hypothetical protein MaviaA2_22106 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398634|gb|AAS06254.1| hypothetical protein MAP_3704c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460112|gb|EGO39018.1| hypothetical protein MAPs_43680 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=150
Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 126/150 (84%), Positives = 141/150 (94%), Gaps = 0/150 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
M R +EPS GLLDPVAKMLRLPFGTP+FI++IVTG VNQVGRRTL +LITTWDAAGGGPF
Sbjct 1 MPRREEPSHGLLDPVAKMLRLPFGTPEFIDRIVTGGVNQVGRRTLRMLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIA+TG+AKTAEIVQ MFIGPVF PLL++LGADK+A+RASLCA+QLVGLGIMRYG+R
Sbjct 61 AASAIASTGMAKTAEIVQGMFIGPVFGPLLRILGADKVAVRASLCASQLVGLGIMRYGIR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGR 150
SEPLHSMSV+ +VDAIGPTMQRYLVGDI R
Sbjct 121 SEPLHSMSVDAIVDAIGPTMQRYLVGDITR 150
>gi|296167536|ref|ZP_06849888.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897158|gb|EFG76767.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=150
Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/150 (84%), Positives = 139/150 (93%), Gaps = 0/150 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
M R +EPS GLLDPVAKMLRLPFGTP+FI++IVTG VNQ GR+TL +LITTWDAAGGGPF
Sbjct 1 MPRREEPSHGLLDPVAKMLRLPFGTPEFIDRIVTGGVNQAGRQTLRMLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIA+TG+AKTAE VQSMFIGPVF PLLK+LGADK+A RASLCA+QLVGLGIMRYGVR
Sbjct 61 AASAIASTGMAKTAETVQSMFIGPVFGPLLKLLGADKVATRASLCASQLVGLGIMRYGVR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGR 150
SEPLHSMSV+ +VDAIGPTMQRYLVGDI R
Sbjct 121 SEPLHSMSVDAIVDAIGPTMQRYLVGDITR 150
>gi|342859269|ref|ZP_08715923.1| hypothetical protein MCOL_10333 [Mycobacterium colombiense CECT
3035]
gi|342133510|gb|EGT86713.1| hypothetical protein MCOL_10333 [Mycobacterium colombiense CECT
3035]
Length=150
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 125/150 (84%), Positives = 140/150 (94%), Gaps = 0/150 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
M R +EPS G+LDPVAKMLRLPFGTP+FI+++VTG VNQVGRRTL LITTWDAAGGGPF
Sbjct 1 MPRREEPSPGILDPVAKMLRLPFGTPEFIDRMVTGGVNQVGRRTLRTLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASAIA+TG+AKTAEIVQ MFIGPVF P+LK+LGADK+A+RASLCA+QLVGLGIMRYG+R
Sbjct 61 AASAIASTGMAKTAEIVQGMFIGPVFGPVLKILGADKVALRASLCASQLVGLGIMRYGIR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGR 150
SEPLHSMSV+ LVDAIGPTMQRYLVGDI R
Sbjct 121 SEPLHSMSVDALVDAIGPTMQRYLVGDITR 150
>gi|254820414|ref|ZP_05225415.1| hypothetical protein MintA_10816 [Mycobacterium intracellulare
ATCC 13950]
Length=150
Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/150 (82%), Positives = 139/150 (93%), Gaps = 0/150 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
M R +EPSRG+LDPVAK LRLPFGTP+FI+++VTG VNQ+GRRTL +LITTWDAAGGGPF
Sbjct 1 MPRREEPSRGILDPVAKALRLPFGTPEFIDRLVTGGVNQIGRRTLTMLITTWDAAGGGPF 60
Query 61 AASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVR 120
AASA+A+TG+AKTAEIVQS F+GPVF PLLK+LGADK A RASLCA+QLVGLGIMRYG+R
Sbjct 61 AASAVASTGMAKTAEIVQSNFVGPVFGPLLKILGADKAATRASLCASQLVGLGIMRYGIR 120
Query 121 SEPLHSMSVEMLVDAIGPTMQRYLVGDIGR 150
SEPLHSMSV+ LVDAIGPTMQRYLVGDI R
Sbjct 121 SEPLHSMSVDALVDAIGPTMQRYLVGDITR 150
>gi|118463451|ref|YP_884023.1| hypothetical protein MAV_4902 [Mycobacterium avium 104]
gi|118164738|gb|ABK65635.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=136
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/136 (84%), Positives = 130/136 (96%), Gaps = 0/136 (0%)
Query 15 VAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTA 74
+AKMLRLPFGTP+FI++IVTG VNQVGRRTL +LITTWDAAGGGPFAASAIA+TG+AKTA
Sbjct 1 MAKMLRLPFGTPEFIDRIVTGGVNQVGRRTLRMLITTWDAAGGGPFAASAIASTGMAKTA 60
Query 75 EIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVD 134
EIVQ MFIGPVF PLL++LGADK+A+RASLCA+QLVGLGIMRYG+RSEPLHSMSV+ +VD
Sbjct 61 EIVQGMFIGPVFGPLLRILGADKVAVRASLCASQLVGLGIMRYGIRSEPLHSMSVDAIVD 120
Query 135 AIGPTMQRYLVGDIGR 150
AIGPT+QRYLVGDI R
Sbjct 121 AIGPTVQRYLVGDITR 136
>gi|289764376|ref|ZP_06523754.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289711882|gb|EFD75898.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=75
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/75 (96%), Positives = 73/75 (98%), Gaps = 0/75 (0%)
Query 77 VQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAI 136
+QSMFIGPVFNPLLKMLGADKIAIRASL AQLVGLGIMRYGVRSEPLHSMSVEMLVDAI
Sbjct 1 MQSMFIGPVFNPLLKMLGADKIAIRASLWPAQLVGLGIMRYGVRSEPLHSMSVEMLVDAI 60
Query 137 GPTMQRYLVGDIGRG 151
GPTMQRYLVGDIGRG
Sbjct 61 GPTMQRYLVGDIGRG 75
>gi|289568161|ref|ZP_06448388.1| predicted protein [Mycobacterium tuberculosis T17]
gi|289541914|gb|EFD45563.1| predicted protein [Mycobacterium tuberculosis T17]
Length=62
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/62 (100%), Positives = 62/62 (100%), Gaps = 0/62 (0%)
Query 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF
Sbjct 1 MARSQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPF 60
Query 61 AA 62
AA
Sbjct 61 AA 62
>gi|300784198|ref|YP_003764489.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299793712|gb|ADJ44087.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340525617|gb|AEK40822.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=208
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 83/132 (63%), Gaps = 1/132 (0%)
Query 18 MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 77
+L LPF + + + G +++G R + IT WD+AGGG F A + TG + ++
Sbjct 78 VLELPFDPLELQKILRHGPDDELGERIVRTFITRWDSAGGGQFVALIRSVTGHEQAGHVL 137
Query 78 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
+ F F+ L+ +G+D+ A+R +LCA+Q+VGLG++RY + EPL + VE+LV AI
Sbjct 138 RDFF-QRFFSALITSMGSDRTALRMNLCASQMVGLGMVRYVAKFEPLATEDVEVLVRAIA 196
Query 138 PTMQRYLVGDIG 149
P +QRYL G+IG
Sbjct 197 PNLQRYLTGEIG 208
>gi|256379706|ref|YP_003103366.1| TetR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255924009|gb|ACU39520.1| transcriptional regulator, TetR family [Actinosynnema mirum DSM
43827]
Length=220
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/132 (39%), Positives = 76/132 (58%), Gaps = 0/132 (0%)
Query 18 MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 77
+L+LP + + +I G +G R + + WDA GGG F+A + G + +
Sbjct 72 VLQLPVDPVEIVRRIAQGPPELLGERLVRTFLGVWDATGGGAFSALVRSVAGHEQVTHAL 131
Query 78 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
+FI V +++ D+ +RA+LCA+Q+VGLG+ RY + EPL S E LV A+G
Sbjct 132 HDLFIKTVLGQVMRAFDVDRPELRATLCASQMVGLGMTRYVLEFEPLASADPEALVSAVG 191
Query 138 PTMQRYLVGDIG 149
PT+QRYL GDIG
Sbjct 192 PTLQRYLSGDIG 203
>gi|257056790|ref|YP_003134622.1| transcriptional regulator [Saccharomonospora viridis DSM 43017]
gi|256586662|gb|ACU97795.1| transcriptional regulator [Saccharomonospora viridis DSM 43017]
Length=216
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/132 (37%), Positives = 75/132 (57%), Gaps = 0/132 (0%)
Query 18 MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 77
+L++PF D + + ++G + +TTWD AGG F A + T + + +
Sbjct 81 VLQVPFDFRDVVADVTADGPERLGENIVRRFVTTWDGAGGDRFVALVRSITTYTEALDAL 140
Query 78 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
+ + +F P+ ++ G+D+ +RASLCA Q++GLG+ RY EPL S VE LV I
Sbjct 141 RDTLVNQLFTPIAQVTGSDRPDLRASLCATQVIGLGMSRYVAGIEPLASADVETLVATIA 200
Query 138 PTMQRYLVGDIG 149
PT+QRYL D+G
Sbjct 201 PTLQRYLTDDLG 212
>gi|302525437|ref|ZP_07277779.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302434332|gb|EFL06148.1| transcriptional regulator [Streptomyces sp. AA4]
Length=209
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 76/131 (59%), Gaps = 1/131 (0%)
Query 18 MLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 77
+L+LPF + + + G V+++G R +T WD AGG F A + G + ++
Sbjct 79 VLKLPFEPAELVTVLRDGPVDELGVRIARTFLTRWDGAGGDTFQALIRSIAGHEAASTVL 138
Query 78 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
+ F+ F LL LG D+ +R +LCA+QLVG+G++RY R P+ V+ L+ A+
Sbjct 139 REFFL-QFFTSLLSDLGGDRHELRVALCASQLVGMGLVRYVARFPPMVEAEVDTLIAAVA 197
Query 138 PTMQRYLVGDI 148
PT+QRYL GDI
Sbjct 198 PTLQRYLTGDI 208
>gi|134102203|ref|YP_001107864.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291007489|ref|ZP_06565462.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133914826|emb|CAM04939.1| transcriptional regulator, TetR family [Saccharopolyspora erythraea
NRRL 2338]
Length=207
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/131 (42%), Positives = 79/131 (61%), Gaps = 6/131 (4%)
Query 21 LPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAA--SAIATTGLAKTAEIVQ 78
+P + + KI+ G ++VG R + +T WD GGG FAA +IAT +TA +
Sbjct 75 IPVNPAEVLPKILDGPRDRVGERMVRTFVTVWDREGGGAFAALVRSIATH---ETAVRML 131
Query 79 SMFIGPV-FNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
FI V F L++ LG D+ +RASLCA+Q+VGLG++RY EP+ S E +V A+
Sbjct 132 REFITTVMFGGLVRELGVDRPELRASLCASQVVGLGMVRYVAALEPIASADAETVVAAVA 191
Query 138 PTMQRYLVGDI 148
P +QRYL GD+
Sbjct 192 PNLQRYLTGDL 202
>gi|331696675|ref|YP_004332914.1| regulatory protein TetR [Pseudonocardia dioxanivorans CB1190]
gi|326951364|gb|AEA25061.1| regulatory protein TetR [Pseudonocardia dioxanivorans CB1190]
Length=221
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/129 (32%), Positives = 71/129 (56%), Gaps = 2/129 (1%)
Query 19 LRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQ 78
L P +++++ G ++G R + + WDA GG P + I + +TA +
Sbjct 91 LDFPIDIATILDRVLPGPPEELGARIIRTFLGVWDATGGAPLG-TLIRSVASHETAAGMM 149
Query 79 SMFIGPVF-NPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
F+G L++ + D+ +RA+LC +Q++GLG++RY +R EP+ S + +V A
Sbjct 150 REFVGTALAQRLVRPVAPDRHELRAALCGSQIIGLGMIRYVLRLEPIASAGHDEVVSATA 209
Query 138 PTMQRYLVG 146
PT+QRYL G
Sbjct 210 PTLQRYLTG 218
>gi|340360295|ref|ZP_08682765.1| TetR family transcriptional regulator [Actinomyces sp. oral taxon
448 str. F0400]
gi|339883496|gb|EGQ73339.1| TetR family transcriptional regulator [Actinomyces sp. oral taxon
448 str. F0400]
Length=198
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 75/143 (53%), Gaps = 0/143 (0%)
Query 6 EPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAI 65
+ SR ++ V L P ++ + + GR + V IT WD G F A
Sbjct 55 DRSRLFVESVLGTLDGALADPSLLDGVRRLPKAEQGRAFVEVFITQWDRMGQDRFTAVMW 114
Query 66 ATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLH 125
A G + E ++SM IG + P++ + D++ +R+ L A+QLVGLG+ R+ VR + +
Sbjct 115 AALGDQEVVERIRSMLIGALVTPVVTCVAPDQVDLRSQLVASQLVGLGMARWVVRLDAVR 174
Query 126 SMSVEMLVDAIGPTMQRYLVGDI 148
+ + L A+GPT+QRYL D+
Sbjct 175 AADAQTLAAAVGPTIQRYLTEDL 197
>gi|145595694|ref|YP_001159991.1| regulatory protein TetR [Salinispora tropica CNB-440]
gi|145305031|gb|ABP55613.1| transcriptional regulator, TetR family [Salinispora tropica CNB-440]
Length=215
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 64/127 (51%), Gaps = 2/127 (1%)
Query 22 PFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMF 81
P + + ++ G +Q+G R + + WD+ G A + TA +++
Sbjct 68 PADPAEVLRTVLAGDPDQIGERLIRAFLGIWDSPAGTSAVALLRSAVSNEWTARLLREFL 127
Query 82 IGPVFNPLLKMLGAD--KIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPT 139
V +L L D + +R SL A+QL GL + RY +R EP+ + + E LVD++GPT
Sbjct 128 TTQVLRRVLDHLEVDPAQAPLRGSLVASQLFGLAMARYVIRLEPIATAAPETLVDSVGPT 187
Query 140 MQRYLVG 146
MQRYL
Sbjct 188 MQRYLTA 194
>gi|325001836|ref|ZP_08122948.1| TetR family transcriptional regulator [Pseudonocardia sp. P1]
Length=212
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/120 (40%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query 31 KIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAI-ATTGLAKTAEIVQSMFIGPVFNPL 89
+++ G VG R + ++ WDAAG G A+ + + G A +++ + P+
Sbjct 87 EVLGGDPRDVGERVVGGFLSVWDAAGDGGAMAALLRSVAGHEFAARMLREFVTRVILRPV 146
Query 90 LKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDIG 149
+ + D+ A R +L A+QL+GLG+MRY VR EPL S S E LV +IGPT+QRYL G++G
Sbjct 147 TERVSPDRRAERGALVASQLIGLGMMRYVVRLEPLASASREELVASIGPTVQRYLTGNLG 206
>gi|340358589|ref|ZP_08681102.1| regulatory protein, TetR [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339886133|gb|EGQ75806.1| regulatory protein, TetR [Actinomyces sp. oral taxon 448 str.
F0400]
Length=269
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/125 (38%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query 29 IEKIVTGSVNQVGRRTLYVLITTWD-AAGGGPFAA--SAIATTGLAKTAEIVQSMFIGPV 85
I KIV+G + G R + + +TTWD + GG F A IAT A A VQ+ +
Sbjct 91 IAKIVSGDIRTAGPRLVRLAMTTWDDSEGGATFHALLRWIATDDSAPKA--VQTYATEQI 148
Query 86 FNPLLKMLGADKIAI-----RASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTM 140
P+ + L +++ RA+L +Q+VGL +MRY +R +PL SV+ LV+ +GPT+
Sbjct 149 AGPIAQALAQAGVSVPHARERATLVGSQIVGLAMMRYLLRLDPLAEASVDHLVEVVGPTV 208
Query 141 QRYLV 145
Q YL
Sbjct 209 QHYLT 213
>gi|320534739|ref|ZP_08035169.1| hypothetical protein HMPREF9057_03079 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320133047|gb|EFW25565.1| hypothetical protein HMPREF9057_03079 [Actinomyces sp. oral taxon
171 str. F0337]
Length=165
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/124 (38%), Positives = 67/124 (55%), Gaps = 6/124 (4%)
Query 29 IEKIVTGSVNQVGRRTLYVLITTWD-AAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFN 87
I +V+G + G R + + +T WD AAGG F + E +QS +
Sbjct 37 IAAVVSGDLRSAGPRLVRLSLTAWDDAAGGATFRTLLRWMATDVSSPEAIQSYATEQIAT 96
Query 88 PL---LKMLGADKIAIR--ASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQR 142
P+ LK G I+ R A+L +QLVGL ++RY +R EP+ S SV+ LV+ +GPT+Q
Sbjct 97 PMAEALKQSGLSGISARERATLAGSQLVGLAMIRYVLRLEPVASASVDHLVEVVGPTIQH 156
Query 143 YLVG 146
YL G
Sbjct 157 YLTG 160
>gi|159038944|ref|YP_001538197.1| TetR family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917779|gb|ABV99206.1| transcriptional regulator, TetR family [Salinispora arenicola
CNS-205]
Length=198
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/129 (31%), Positives = 65/129 (51%), Gaps = 2/129 (1%)
Query 22 PFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMF 81
P + + ++ G ++G R + ++ WD+ G P A + TA +++
Sbjct 68 PADPAEVVPTVLAGDPGRIGERLIRAFLSVWDSPAGTPALALLRSAVSNEWTARLLREFL 127
Query 82 IGPVFNPLLKMLGAD--KIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPT 139
V +L L D + +R SL A+QL GL + RY +R EP+ + + E LV A+GPT
Sbjct 128 TTQVLRRVLDHLDVDPTESPLRGSLVASQLFGLAMARYVLRLEPVATAAPETLVGAVGPT 187
Query 140 MQRYLVGDI 148
+QRYL +
Sbjct 188 VQRYLTAPL 196
>gi|330469257|ref|YP_004407000.1| TetR family transcriptional regulator [Verrucosispora maris AB-18-032]
gi|328812228|gb|AEB46400.1| TetR family transcriptional regulator [Verrucosispora maris AB-18-032]
Length=196
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (52%), Gaps = 2/130 (1%)
Query 19 LRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQ 78
++ PF + + ++ G +G R + ++ WD+ G A + TA +++
Sbjct 65 MQAPFDPREVLPAVLAGDRAGLGERIVRTFLSVWDSPAGTAGIAMLRSAVSNEWTARLLR 124
Query 79 SMFIGPVFNPLLKMLGAD--KIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAI 136
V P+L + D ++ +R SL A+QLVGL +MR+ +R EP+ + E+LV AI
Sbjct 125 EFVTIHVLRPILDHVDVDPAEVPLRGSLLASQLVGLAVMRHVIRLEPIATADPEVLVAAI 184
Query 137 GPTMQRYLVG 146
PT+ RYL
Sbjct 185 APTIGRYLTA 194
>gi|329948053|ref|ZP_08294954.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328523192|gb|EGF50293.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 170 str. F0386]
Length=236
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/126 (36%), Positives = 66/126 (53%), Gaps = 6/126 (4%)
Query 27 DFIEKIVTGSVNQVGRRTLYVLITTWD-AAGGGPFAASAIATTGLAKTAEIVQSMFIGPV 85
+ I V+G + G R + + +T WD AAGG F + E +QS +
Sbjct 106 EEIAAAVSGDLRSAGPRLVRLSLTAWDDAAGGATFRTLLRWMATDVSSPEAIQSYATEQI 165
Query 86 FNPL---LKMLGADKIAIR--ASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTM 140
P+ LK G I+ R A+L +QLVGL ++RY +R EP+ S V+ LV+ +GPT+
Sbjct 166 ATPMAEALKQSGLSGISARERATLAGSQLVGLAMIRYVLRLEPVASAGVDHLVEVVGPTI 225
Query 141 QRYLVG 146
Q YL G
Sbjct 226 QHYLTG 231
>gi|320533955|ref|ZP_08034519.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133832|gb|EFW26216.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 171 str. F0337]
Length=205
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/111 (33%), Positives = 57/111 (52%), Gaps = 0/111 (0%)
Query 38 NQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADK 97
Q+G + +I+ WD AG F A A G E + V +P++ D+
Sbjct 88 EQLGEGIVRAVISLWDEAGADRFTAVIHAALGQGGRVEPFRDFIAIGVLSPIVTHFCPDR 147
Query 98 IAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDI 148
+RA L A+Q++GLG+ R+ R + + S+ E LV +GPT+QRY D+
Sbjct 148 PQLRAQLIASQIIGLGLARWVARMDHIASLDAEALVALVGPTIQRYAFDDL 198
>gi|315504646|ref|YP_004083533.1| regulatory protein TetR [Micromonospora sp. L5]
gi|315411265|gb|ADU09382.1| regulatory protein TetR [Micromonospora sp. L5]
Length=198
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 67/125 (54%), Gaps = 6/125 (4%)
Query 28 FIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAK--TAEIVQSMFIGPV 85
+ ++ G + +G R + V + WD+ G AA A+ + ++ TA +++ + V
Sbjct 75 LLPAVLAGGPDALGERMVRVFLEVWDSPTGT--AAVALLRSAVSNDWTARLLREFLVTQV 132
Query 86 FNPLLKMLGAD--KIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRY 143
+L L D + A+R L A QL GL +MRY +R + + + LV AIGPT+QRY
Sbjct 133 LRRVLDQLDVDPAQRALRGGLVATQLAGLAMMRYVLRLDAVATAEPATLVAAIGPTVQRY 192
Query 144 LVGDI 148
L GDI
Sbjct 193 LTGDI 197
>gi|302868884|ref|YP_003837521.1| regulatory protein TetR [Micromonospora aurantiaca ATCC 27029]
gi|302571743|gb|ADL47945.1| regulatory protein TetR [Micromonospora aurantiaca ATCC 27029]
Length=198
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 67/125 (54%), Gaps = 6/125 (4%)
Query 28 FIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAK--TAEIVQSMFIGPV 85
+ ++ G + +G R + V + WD+ G AA A+ + ++ TA +++ + V
Sbjct 75 LLPAVLAGGPDALGERMVRVFLEVWDSPTGT--AAVALLRSAVSNDWTARLLREFLVTQV 132
Query 86 FNPLLKMLGAD--KIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRY 143
+L L D + A+R L A QL GL +MRY +R + + + LV AIGPT+QRY
Sbjct 133 LRRVLDQLDVDPGQRALRGGLVATQLAGLAMMRYVLRLDAIATAEPATLVAAIGPTVQRY 192
Query 144 LVGDI 148
L GDI
Sbjct 193 LTGDI 197
>gi|118467564|ref|YP_889528.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
gi|118168851|gb|ABK69747.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
Length=214
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/153 (31%), Positives = 73/153 (48%), Gaps = 26/153 (16%)
Query 4 SQEPSRGLLDPVAKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAAS 63
+ +P + LD V + P G GR L +L+ +W GP +
Sbjct 69 ATDPPQKWLDAVVATWQAPVG--------------DTGRAVLRLLLDSWADDEVGPVLRA 114
Query 64 AIAT-----TGLAKTAEIVQSMFIGPVFNPLLKMLGADKIA--IRASLCAAQLVGLGIMR 116
+ T T K ++V+ IG ++ +G D+ RA L A+Q +G +MR
Sbjct 115 ILQTAAHEPTTHEKLRKVVERSLIG-----VIATMGDDERVRRTRAGLVASQTIGFALMR 169
Query 117 YGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDIG 149
Y R EP+ SM + ++DA+GPT+QRY+ GDIG
Sbjct 170 YVWRIEPVASMREDEVLDAVGPTLQRYIDGDIG 202
>gi|325068583|ref|ZP_08127256.1| transcriptional regulator [Actinomyces oris K20]
Length=175
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 56/111 (51%), Gaps = 0/111 (0%)
Query 38 NQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADK 97
Q+G + +I+ WD G F A A G E + + +P++ D+
Sbjct 58 EQLGEGIVRAVISLWDDVGADRFTAVIHAALGQGSDVEPFRDFIATGILSPIVTHFCPDR 117
Query 98 IAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDI 148
+RA L A+Q++GLG+ R+ R + + S+ E LV +GPT+QRY D+
Sbjct 118 PQLRAQLIASQIIGLGLARWVARMDHIASLDAEALVALVGPTIQRYAFDDL 168
>gi|329946943|ref|ZP_08294355.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328526754|gb|EGF53767.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 170 str. F0386]
Length=205
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 56/111 (51%), Gaps = 0/111 (0%)
Query 38 NQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADK 97
Q+G + +I+ WD AG F A A G E + + +P++ D+
Sbjct 88 EQLGEGIVRAVISLWDEAGADRFTAVIHAALGQGSDIEPFRDFIATGILSPIVSHFCPDR 147
Query 98 IAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDI 148
+RA L A+Q++GLG+ R+ R + + + VE +GPT+QRY GD+
Sbjct 148 PQLRAQLIASQIIGLGLARWVARMDHIAGLDVEAAAALVGPTIQRYAFGDL 198
>gi|326772641|ref|ZP_08231925.1| transcriptional regulator, TetR family [Actinomyces viscosus
C505]
gi|326637273|gb|EGE38175.1| transcriptional regulator, TetR family [Actinomyces viscosus
C505]
Length=235
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (33%), Positives = 67/124 (55%), Gaps = 6/124 (4%)
Query 29 IEKIVTGSVNQVGRRTLYVLITTWDA-AGGGPFAASAIATTGLAKTAEIVQSMFIGPVFN 87
I ++G + G R + + +T WD A G F + ++ E +Q+ V
Sbjct 107 IATAISGDLLSAGPRLVRLSLTAWDDDADGATFRSLLQWMATDTRSPEAIQNYATEQVAA 166
Query 88 PLLKMLGADKIAI-----RASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQR 142
P+ + L +++ RA+L +QLVGL ++RY +R EP+ S S++ LV+ +GPT+QR
Sbjct 167 PMAEALEQSGLSVASPRERATLAGSQLVGLAMIRYVLRLEPIASASIDHLVEVVGPTIQR 226
Query 143 YLVG 146
YL G
Sbjct 227 YLTG 230
>gi|333921261|ref|YP_004494842.1| TetR family transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483482|gb|AEF42042.1| Transcriptional regulator, TetR family [Amycolicicoccus subflavus
DQS3-9A1]
Length=212
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (32%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query 19 LRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAAS---AIATTGLAKTAE 75
+R P + ++++ +++G R ++ WD+ G A + A+A G+
Sbjct 67 MRAPVNPVEVVQRLAAEGPDKLGFRIAETFVSVWDSPAGSGLAQAMRGALAQDGMTVAMR 126
Query 76 IVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDA 135
+ I P L +K +RASL A+QL+GL + RY +R EPL S S E +V +
Sbjct 127 EFVTHQILPAIASALDAPAPEK-RVRASLVASQLIGLAVTRYILRIEPLASASPEAVVGS 185
Query 136 IGPTMQRYLVGD 147
IGP +Q YL G
Sbjct 186 IGPVLQGYLTGS 197
>gi|343522985|ref|ZP_08759950.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343400733|gb|EGV13245.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 175 str. F0384]
Length=235
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (32%), Positives = 67/124 (55%), Gaps = 6/124 (4%)
Query 29 IEKIVTGSVNQVGRRTLYVLITTWDA-AGGGPFAASAIATTGLAKTAEIVQSMFIGPVFN 87
I ++G + G R + + +T WD A G F + ++ E +Q+ V
Sbjct 107 IATAISGDLLSAGPRLVRLSLTAWDDDADGATFRSLLQWMATDTRSPEAIQNYATEQVAA 166
Query 88 PLLKMLGADKIAI-----RASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQR 142
P+ ++L +++ RA+L +QLVGL ++RY +R EP+ S S++ L + +GPT+QR
Sbjct 167 PMAEVLEQSGLSVASPRERATLAGSQLVGLAMIRYVLRLEPIASASIDHLAEVVGPTIQR 226
Query 143 YLVG 146
YL G
Sbjct 227 YLTG 230
>gi|219664383|gb|ACL31233.1| TetR family putative regulatory protein [Rhodococcus sp. TFB]
Length=200
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (33%), Positives = 69/132 (53%), Gaps = 6/132 (4%)
Query 22 PFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAK--TAEIVQS 79
P ++ I+ G +++ R L + WD+ G AA A+ +A +A +++
Sbjct 70 PLDLGHLVDLILDGPRDRLAERLLRTALELWDSPAGS--AAMAVLRGAMAHDGSATLLRE 127
Query 80 MFIGPVFNPLLKMLGAD-KIAI-RASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
+ PL + + D ++A+ RASL A QL+GL MRY + EPL S S +VD I
Sbjct 128 FLLKRALQPLTESVERDTELALWRASLVATQLMGLASMRYLLALEPLASASHTRIVDLIA 187
Query 138 PTMQRYLVGDIG 149
P +QRYL G++
Sbjct 188 PNVQRYLTGELS 199
>gi|271970306|ref|YP_003344502.1| TetR family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270513481|gb|ACZ91759.1| putative transcriptional regulator, TetR family [Streptosporangium
roseum DSM 43021]
Length=217
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/129 (34%), Positives = 64/129 (50%), Gaps = 3/129 (2%)
Query 19 LRLPFGTPDFIEKIVTGSVNQVGRR-TLYVLITTWDAAGGGPFAASAIATTGLAKTAEIV 77
+ LP + I I+ G ++G R T +VL T +A P A + +V
Sbjct 90 MELPVNPDEVIPMIMNGPREEIGERLTRFVLTMTSEAGARQPVLALVRTAMTNDRVVSMV 149
Query 78 QSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIG 137
+ + N + + LG AIR + AQL G+ +MRY V+ EPL S +E LV+ +
Sbjct 150 REFLTHAIVNRVAEGLGIP--AIRMEVAFAQLFGVVLMRYVVKLEPLASAEIEELVELLA 207
Query 138 PTMQRYLVG 146
PT+QRYL G
Sbjct 208 PTIQRYLDG 216
>gi|326773554|ref|ZP_08232837.1| transcriptional regulator, TetR family [Actinomyces viscosus
C505]
gi|326636784|gb|EGE37687.1| transcriptional regulator, TetR family [Actinomyces viscosus
C505]
Length=205
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 52/111 (47%), Gaps = 0/111 (0%)
Query 38 NQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADK 97
+G + I WD AG F A A G E + V +P++ D
Sbjct 88 EHLGEGIVRAFIGLWDDAGADRFTAVIHAALGQGSDVEPFRDFIATGVLSPIVTHFCPDH 147
Query 98 IAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDI 148
+RA L A+Q++GLG+ R+ R + + + VE L +GPT+QRY D+
Sbjct 148 PQLRAQLIASQIIGLGLARWVARMDHIAGLDVEALAALVGPTIQRYAFDDL 198
>gi|343522319|ref|ZP_08759285.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343401728|gb|EGV14234.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 175 str. F0384]
Length=205
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/111 (28%), Positives = 55/111 (50%), Gaps = 0/111 (0%)
Query 38 NQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADK 97
Q+G + +++ WD AG F A A G E + V +P++ D+
Sbjct 88 EQLGEGIVRAVVSLWDEAGADRFTAVIHAALGQGSDVEPFRDFIATGVLSPIVTHFCPDR 147
Query 98 IAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDI 148
+RA L A+Q++GLG+ R+ R + + + +E + +GPT+Q Y D+
Sbjct 148 PQLRAQLIASQIIGLGLARWVARMDHIAGLDIEAVAALVGPTIQHYAFDDL 198
>gi|118468038|ref|YP_888058.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
gi|118169325|gb|ABK70221.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
Length=211
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query 16 AKMLRLPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAA---SAIATTGLAK 72
A + +P + I + V Q+G +L+ WD+ G F A S +A ++
Sbjct 71 AAAIHIPIDPLEVIGPLREVPVEQIGHTLPRLLLPLWDSELGKGFIATLRSILAGNDVSL 130
Query 73 TAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEML 132
+Q + +G V + + G+ +I R A+QLVG+ + RY + EP S+ VE +
Sbjct 131 VRSFLQEVIVGEVGSRVDNPAGSGRI--RVQYVASQLVGVVMARYILELEPFKSLPVEQI 188
Query 133 VDAIGPTMQRYLVGDI 148
+ IGP +QRYL G++
Sbjct 189 AETIGPNLQRYLTGEL 204
>gi|258651937|ref|YP_003201093.1| TetR family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258555162|gb|ACV78104.1| transcriptional regulator, TetR family [Nakamurella multipartita
DSM 44233]
Length=211
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/130 (34%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query 22 PFGTPDFI-EKIVTGSVNQVGRRTLYVLITTWDAAGG-GPFAASAIATTGLAKTAEIVQS 79
P PD + ++ + +G R L L+T WD G P + ++ +++
Sbjct 82 PMVDPDLVLAGVLDAGADGLGERLLRRLLTAWDRPGEPNPMVILVRSAVSHEESTVLLRR 141
Query 80 MFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPT 139
+ L+ + A +RASL +QL+GL + R+ VR EPL S VE +V AI PT
Sbjct 142 FVTDQLLGRLVGEIAAPDPELRASLVGSQLIGLVMARFIVRVEPLASAPVEQVVTAIAPT 201
Query 140 MQRYLVGDIG 149
+QRYL G IG
Sbjct 202 LQRYLTGPIG 211
>gi|284034271|ref|YP_003384202.1| TetR family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283813564|gb|ADB35403.1| transcriptional regulator, TetR family [Kribbella flavida DSM
17836]
Length=194
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/127 (30%), Positives = 61/127 (49%), Gaps = 1/127 (0%)
Query 21 LPFGTPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIAT-TGLAKTAEIVQS 79
LP I+ G V+ +GRR + V + W++ G + + + + A++++
Sbjct 68 LPIDPRQVAATILDGPVDDLGRRIVTVFLGVWESPDGQQRMKALLRSMVSSDQVAQLMRE 127
Query 80 MFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPT 139
V P+ K L +R SL A+QLVGL + RY + +P+ + LVD I P
Sbjct 128 GLTRMVIAPVSKALDVPDARLRVSLVASQLVGLALTRYVLELDPITTEPAAELVDRIAPA 187
Query 140 MQRYLVG 146
+Q YL G
Sbjct 188 LQHYLTG 194
>gi|296270220|ref|YP_003652852.1| TetR family transcriptional regulator [Thermobispora bispora
DSM 43833]
gi|296093007|gb|ADG88959.1| transcriptional regulator, TetR family [Thermobispora bispora
DSM 43833]
Length=227
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (32%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query 33 VTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKT----AEIVQSMFIGPVFNP 88
V G +G R L + W+ G A A G A T A++V+S + P
Sbjct 81 VPGDPATLGERVLRRYLELWEHPEDG---ARLRAVVGAAFTSPSAADLVRSFLAEEILRP 137
Query 89 LLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVG 146
+++ D RA+L + LVG+ +RY +R EP+ +++V+ LV GP +QRY+ G
Sbjct 138 MIEAASLDHGETRAALVTSHLVGIAYLRYVLRVEPMAALTVDELVAWAGPALQRYITG 195
>gi|118467741|ref|YP_886535.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
gi|118169028|gb|ABK69924.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
Length=199
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 51/108 (48%), Gaps = 1/108 (0%)
Query 38 NQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTA-EIVQSMFIGPVFNPLLKMLGAD 96
++G R + +I WD G + + + A +++ GPV + G D
Sbjct 87 EEIGARLVREVIRRWDEGGSFDLLLTVFKSADIHPLARKLLHDSLAGPVAQRVAAEFGVD 146
Query 97 KIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYL 144
+R L +VGL RY ++ EPL S ++ LV +GPT+QRYL
Sbjct 147 DAELRVELVTVHMVGLAFARYQLKIEPLASAGLDDLVSWLGPTVQRYL 194
>gi|120404273|ref|YP_954102.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119957091|gb|ABM14096.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=206
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (32%), Positives = 61/115 (54%), Gaps = 5/115 (4%)
Query 37 VNQVGRRTLYVLITTWDAAGGGPFAA---SAIATTGLAKTAEIVQSMFIGPVFNPLLKML 93
V+Q+GR +L+ WD+ G F A S +A + ++ +Q + V +
Sbjct 88 VDQLGRALPSLLLPLWDSELGKGFIATLRSILAGSDVSMVRSFLQDLIATEVGGRVDDPP 147
Query 94 GADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGDI 148
G+ ++ R A+QLVG+ + RY + EP S+ VE +VD + P +QRYL G++
Sbjct 148 GSGRV--RVQFVASQLVGIVMARYILELEPFKSLPVEQIVDTVAPNLQRYLTGEL 200
>gi|269955224|ref|YP_003325013.1| TetR family transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
gi|269303905|gb|ACZ29455.1| transcriptional regulator, TetR family [Xylanimonas cellulosilytica
DSM 15894]
Length=228
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (30%), Positives = 59/115 (52%), Gaps = 1/115 (0%)
Query 33 VTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIG-PVFNPLLK 91
+ G ++ +G R + ++ TWDA GG A+ + ++G + P+
Sbjct 88 IEGPLDGIGTRLVRHVLETWDADDGGAGIRLALPVALADPEKRALLPQYLGTEILGPIAA 147
Query 92 MLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVG 146
L +RASL A Q+VG+ + RY + EP+ S+ + + +GPT++RYLVG
Sbjct 148 RLDPASARLRASLAATQMVGVLLARYVIGVEPIASLPAARVAELVGPTLERYLVG 202
>gi|302530381|ref|ZP_07282723.1| predicted protein [Streptomyces sp. AA4]
gi|302439276|gb|EFL11092.1| predicted protein [Streptomyces sp. AA4]
Length=157
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/120 (32%), Positives = 57/120 (48%), Gaps = 3/120 (2%)
Query 25 TPDFIEKIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGP 84
P +E++ G + +G R + L+ DA+G P A + A + +++
Sbjct 37 VPPALEEVFAGGFDGLGERIVRTLVENLDASGRTPLAMLSRADD---QADALLREYLDRE 93
Query 85 VFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYL 144
+ L K+L A RA + QL+GL + RY VR EPL S SV LV GP +Q L
Sbjct 94 ITGRLAKLLDAPDAEFRAGMVNVQLLGLAVARYVVRIEPLASASVAELVSRFGPLVQHCL 153
>gi|332669392|ref|YP_004452400.1| regulatory protein TetR [Cellulomonas fimi ATCC 484]
gi|332338430|gb|AEE45013.1| regulatory protein TetR [Cellulomonas fimi ATCC 484]
Length=210
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/121 (31%), Positives = 66/121 (55%), Gaps = 6/121 (4%)
Query 31 KIVTGSVNQVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSM--FIG-PVFN 87
+V G ++ +G R L ++ WD+ GG F A +G Q++ ++G VF+
Sbjct 89 DLVAGGLDGLGERLLRTVLGVWDSDGGVTFRA---VFSGFGSGEVPSQALMGYVGREVFS 145
Query 88 PLLKMLGADKIAIRASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQRYLVGD 147
+ ++L A+R SL A+ +VG+ + R+ +R EP+ S+ + L +GP +QRYL G
Sbjct 146 QVARVLPGPDPALRVSLVASHVVGVLVTRHVLRVEPVASLDADRLAALVGPVVQRYLDGP 205
Query 148 I 148
+
Sbjct 206 L 206
>gi|325066594|ref|ZP_08125267.1| TetR family transcriptional regulator [Actinomyces oris K20]
Length=165
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/124 (31%), Positives = 60/124 (49%), Gaps = 6/124 (4%)
Query 29 IEKIVTGSVNQVGRRTLYVLITTWDAAG-GGPFAASAIATTGLAKTAEIVQSMFIGPVFN 87
I V G + G R + + +T WD A G F ++ E +Q+ +
Sbjct 37 IATAVNGDLLSAGPRLVRLSLTAWDDADDGATFRTLLQWMAADIRSPEAIQNYATEQIAT 96
Query 88 PLLKMLGADKIAI-----RASLCAAQLVGLGIMRYGVRSEPLHSMSVEMLVDAIGPTMQR 142
P+ + L + I RA+L +QLVGL + RY +R EP+ S++ L + +GPT+Q
Sbjct 97 PMAEALEQSGLPIASARERAALIGSQLVGLAMTRYVLRLEPIAGASIDHLEEVVGPTIQH 156
Query 143 YLVG 146
YL G
Sbjct 157 YLTG 160
Lambda K H
0.323 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128896424032
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40