BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0265c Length=330 Score E Sequences producing significant alignments: (Bits) Value gi|15839647|ref|NP_334684.1| ABC transporter, periplasmic substr... 657 0.0 gi|340625302|ref|YP_004743754.1| putative periplasmic iron-trans... 654 0.0 gi|121636178|ref|YP_976401.1| putative periplasmic iron-transpor... 654 0.0 gi|323717095|gb|EGB26305.1| periplasmic iron-transport lipoprote... 635 2e-180 gi|183980553|ref|YP_001848844.1| periplasmic iron-transport lipo... 515 4e-144 gi|118616903|ref|YP_905235.1| periplasmic iron-transport lipopro... 514 6e-144 gi|118464518|ref|YP_884016.1| periplasmic binding protein [Mycob... 488 6e-136 gi|296167542|ref|ZP_06849894.1| iron(III) ABC superfamily ATP bi... 486 2e-135 gi|41409808|ref|NP_962644.1| hypothetical protein MAP3710c [Myco... 486 3e-135 gi|254777336|ref|ZP_05218852.1| periplasmic binding protein [Myc... 484 1e-134 gi|342859263|ref|ZP_08715917.1| periplasmic binding protein [Myc... 476 2e-132 gi|254820794|ref|ZP_05225795.1| periplasmic binding protein [Myc... 476 3e-132 gi|240168485|ref|ZP_04747144.1| periplasmic iron-transport lipop... 441 8e-122 gi|118469408|ref|YP_884851.1| periplasmic binding protein [Mycob... 375 7e-102 gi|108797250|ref|YP_637447.1| twin-arginine translocation pathwa... 364 1e-98 gi|333988890|ref|YP_004521504.1| iron ABC transporter periplasmi... 352 7e-95 gi|120401334|ref|YP_951163.1| periplasmic binding protein [Mycob... 339 4e-91 gi|315442049|ref|YP_004074928.1| ABC-type Fe3+-hydroxamate trans... 322 4e-86 gi|145220979|ref|YP_001131657.1| periplasmic binding protein [My... 322 5e-86 gi|169631466|ref|YP_001705115.1| ABC transporter periplasmic sub... 298 6e-79 gi|336120666|ref|YP_004575452.1| putative ABC transporter substr... 241 1e-61 gi|336120665|ref|YP_004575451.1| putative ABC transporter substr... 224 2e-56 gi|323359541|ref|YP_004225937.1| iron hydroxamate ABC transporte... 214 2e-53 gi|284043895|ref|YP_003394235.1| periplasmic binding protein [Co... 206 3e-51 gi|269839045|ref|YP_003323737.1| periplasmic binding protein [Th... 182 5e-44 gi|284029290|ref|YP_003379221.1| periplasmic binding protein [Kr... 176 4e-42 gi|163849358|ref|YP_001637402.1| periplasmic binding protein [Ch... 174 1e-41 gi|312140353|ref|YP_004007689.1| substrate-binding lipoprotein [... 171 1e-40 gi|325676037|ref|ZP_08155720.1| iron ABC superfamily ATP binding... 171 2e-40 gi|257056274|ref|YP_003134106.1| ABC-type Fe3+-hydroxamate trans... 167 2e-39 gi|226363572|ref|YP_002781354.1| ABC transporter substrate-bindi... 166 7e-39 gi|336176176|ref|YP_004581551.1| ABC transporter periplasmic pro... 164 2e-38 gi|226307291|ref|YP_002767251.1| ABC transporter substrate-bindi... 164 2e-38 gi|325048887|dbj|BAJ79313.1| putative ABC transporter substrate-... 164 2e-38 gi|229493225|ref|ZP_04387017.1| periplasmic binding protein [Rho... 162 8e-38 gi|295835956|ref|ZP_06822889.1| ABC transporter, periplasmic sub... 161 1e-37 gi|260426511|ref|ZP_05780490.1| twin-arginine translocation path... 161 1e-37 gi|269928501|ref|YP_003320822.1| periplasmic binding protein [Sp... 160 2e-37 gi|297155001|gb|ADI04713.1| putative siderophore-binding lipopro... 158 1e-36 gi|318058822|ref|ZP_07977545.1| periplasmic binding protein [Str... 155 7e-36 gi|333023802|ref|ZP_08451866.1| putative ABC transporter, peripl... 155 7e-36 gi|297190504|ref|ZP_06907902.1| periplasmic binding protein [Str... 155 7e-36 gi|111021218|ref|YP_704190.1| ABC Fe(3+)-siderophore binding lip... 155 8e-36 gi|259418485|ref|ZP_05742403.1| twin-arginine translocation path... 155 9e-36 gi|108803268|ref|YP_643205.1| periplasmic binding protein [Rubro... 154 1e-35 gi|256379073|ref|YP_003102733.1| periplasmic binding protein [Ac... 152 5e-35 gi|324997367|ref|ZP_08118479.1| periplasmic binding protein [Pse... 152 1e-34 gi|333918219|ref|YP_004491800.1| Fe3+-hydroxamate ABC transporte... 150 3e-34 gi|182435199|ref|YP_001822918.1| putative iron uptake ABC transp... 150 4e-34 gi|271965679|ref|YP_003339875.1| periplasmic binding protein [St... 149 5e-34 >gi|15839647|ref|NP_334684.1| ABC transporter, periplasmic substrate-binding protein [Mycobacterium tuberculosis CDC1551] gi|31791443|ref|NP_853936.1| periplasmic IRON-transport lipoprotein [Mycobacterium bovis AF2122/97] gi|57116710|ref|YP_177705.1| periplasmic IRON-transport lipoprotein [Mycobacterium tuberculosis H37Rv] 73 more sequence titles Length=330 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/330 (99%), Positives = 330/330 (100%), Gaps = 0/330 (0%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV 60 +RQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV Sbjct 1 MRQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV 60 Query 61 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA 120 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA Sbjct 61 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA 120 Query 121 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL Sbjct 121 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 Query 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP Sbjct 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 Query 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE 300 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE Sbjct 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE 300 Query 301 QAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 QAGAIAFSSVLSYPVVAEQLPPQISQILGA Sbjct 301 QAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 >gi|340625302|ref|YP_004743754.1| putative periplasmic iron-transport lipoprotein [Mycobacterium canettii CIPT 140010059] gi|340003492|emb|CCC42612.1| putative periplasmic iron-transport lipoprotein [Mycobacterium canettii CIPT 140010059] Length=330 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/330 (99%), Positives = 329/330 (99%), Gaps = 0/330 (0%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV 60 +RQGCSRRGFLQVA AAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV Sbjct 1 MRQGCSRRGFLQVAGAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV 60 Query 61 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA 120 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA Sbjct 61 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA 120 Query 121 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL Sbjct 121 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 Query 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP Sbjct 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 Query 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE 300 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE Sbjct 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE 300 Query 301 QAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 QAGAIAFSSVLSYPVVAEQLPPQISQILGA Sbjct 301 QAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 >gi|121636178|ref|YP_976401.1| putative periplasmic iron-transport lipoprotein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988651|ref|YP_002643338.1| putative periplasmic iron-transport lipoprotein [Mycobacterium bovis BCG str. Tokyo 172] gi|121491825|emb|CAL70287.1| Probable periplasmic iron-transport lipoprotein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771764|dbj|BAH24570.1| putative periplasmic iron-transport lipoprotein [Mycobacterium bovis BCG str. Tokyo 172] gi|341600194|emb|CCC62863.1| probable periplasmic iron-transport lipoprotein [Mycobacterium bovis BCG str. Moreau RDJ] Length=330 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/330 (99%), Positives = 329/330 (99%), Gaps = 0/330 (0%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV 60 +RQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV Sbjct 1 MRQGCSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVV 60 Query 61 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA 120 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA Sbjct 61 SAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAA 120 Query 121 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL Sbjct 121 LKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 Query 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP Sbjct 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 Query 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE 300 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE Sbjct 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKE 300 Query 301 QAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 QAGAIAFSSVLS PVVAEQLPPQISQILGA Sbjct 301 QAGAIAFSSVLSCPVVAEQLPPQISQILGA 330 >gi|323717095|gb|EGB26305.1| periplasmic iron-transport lipoprotein [Mycobacterium tuberculosis CDC1551A] Length=320 Score = 635 bits (1638), Expect = 2e-180, Method: Compositional matrix adjust. Identities = 319/320 (99%), Positives = 320/320 (100%), Gaps = 0/320 (0%) Query 11 LQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDL 70 +QVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDL Sbjct 1 MQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDL 60 Query 71 LAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAIN 130 LAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAIN Sbjct 61 LAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAIN 120 Query 131 AGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAA 190 AGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAA Sbjct 121 AGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAA 180 Query 191 VAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIP 250 VAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIP Sbjct 181 VAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIP 240 Query 251 RDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSV 310 RDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSV Sbjct 241 RDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSV 300 Query 311 LSYPVVAEQLPPQISQILGA 330 LSYPVVAEQLPPQISQILGA Sbjct 301 LSYPVVAEQLPPQISQILGA 320 >gi|183980553|ref|YP_001848844.1| periplasmic iron-transport lipoprotein [Mycobacterium marinum M] gi|183173879|gb|ACC38989.1| periplasmic iron-transport lipoprotein [Mycobacterium marinum M] Length=330 Score = 515 bits (1327), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 256/333 (77%), Positives = 295/333 (89%), Gaps = 7/333 (2%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAG----CSSPKPPPGTPGGAAVTITHLFGQTVIKEPP 56 ++QG SRRGFLQVA AATGL A CSS KP GT AVTITHLFGQTVIKEPP Sbjct 1 MQQGWSRRGFLQVA---AATGLLASGVAACSSSKPQAGTADTGAVTITHLFGQTVIKEPP 57 Query 57 KRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQID 116 KRVVSAG+TEQDDLLA+ VVPIAVT WFGDQPFAVWPWA PKLG A+P VL+LD+GIQ+D Sbjct 58 KRVVSAGFTEQDDLLALGVVPIAVTRWFGDQPFAVWPWAQPKLGAAQPVVLSLDDGIQVD 117 Query 117 RIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADR 176 +IA LKPDLIVAINAGVDA+TYQ+LSAIAPT+ QSGGDAFFEPWK QA ++G+AVF + + Sbjct 118 QIANLKPDLIVAINAGVDAETYQKLSAIAPTIPQSGGDAFFEPWKLQASTVGEAVFQSAQ 177 Query 177 MRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIAD 236 M+SLI+AV QKFAAVAQ+HP+W GKKALLLQGRLWQGNV+AT+AGWRTDFLN+MGLVI++ Sbjct 178 MKSLIDAVGQKFAAVAQQHPQWMGKKALLLQGRLWQGNVIATMAGWRTDFLNEMGLVISE 237 Query 237 SIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIF 296 IKPFAVDQRGVIPRDHIK VLD+ADVLIW+TESPEDE+ALLADPEIAAS AT Q+RH+F Sbjct 238 GIKPFAVDQRGVIPRDHIKEVLDSADVLIWLTESPEDEQALLADPEIAASAATEQKRHVF 297 Query 297 TSKEQAGAIAFSSVLSYPVVAEQLPPQISQILG 329 T+ +QAGAIAF+S LSYPVVA++LP I+++LG Sbjct 298 TTGDQAGAIAFASPLSYPVVADELPALIAKVLG 330 >gi|118616903|ref|YP_905235.1| periplasmic iron-transport lipoprotein [Mycobacterium ulcerans Agy99] gi|118569013|gb|ABL03764.1| periplasmic iron-transport lipoprotein [Mycobacterium ulcerans Agy99] Length=330 Score = 514 bits (1324), Expect = 6e-144, Method: Compositional matrix adjust. Identities = 255/333 (77%), Positives = 294/333 (89%), Gaps = 7/333 (2%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAG----CSSPKPPPGTPGGAAVTITHLFGQTVIKEPP 56 ++QG SRRGFLQVA AATGL A CSS KP GT AVTITHLFGQTVIKEPP Sbjct 1 MQQGWSRRGFLQVA---AATGLLASGVAACSSSKPQAGTADTGAVTITHLFGQTVIKEPP 57 Query 57 KRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQID 116 KRVVSAG+TEQDDLLA+ VVPIAVT WFGDQPFAVWPWA PKLG A+P VL+LD+GIQ+D Sbjct 58 KRVVSAGFTEQDDLLALGVVPIAVTRWFGDQPFAVWPWAQPKLGAAQPVVLSLDDGIQVD 117 Query 117 RIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADR 176 +IA LKPDLIVAINAGVDA+TYQ+LSAIAPT+ QSGGDAFFEPWK QA ++G+AVF + Sbjct 118 QIANLKPDLIVAINAGVDAETYQKLSAIAPTIPQSGGDAFFEPWKLQASTVGEAVFQRAQ 177 Query 177 MRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIAD 236 M+SLI+AVDQKFAA AQ+HP+W GKKALLLQGRLWQGNV+AT+AGWRTDFLN+MGLV+++ Sbjct 178 MKSLIDAVDQKFAAAAQQHPQWMGKKALLLQGRLWQGNVIATMAGWRTDFLNEMGLVVSE 237 Query 237 SIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIF 296 IKPFAVDQRGVIPRDHIK VLD+ADVLIW+TESPEDE+ALLADPEIAAS AT Q+RH+F Sbjct 238 GIKPFAVDQRGVIPRDHIKEVLDSADVLIWLTESPEDEQALLADPEIAASAATEQKRHVF 297 Query 297 TSKEQAGAIAFSSVLSYPVVAEQLPPQISQILG 329 T+ +QAGAIAF+S LSYPVVA++LP I+++LG Sbjct 298 TTGDQAGAIAFASPLSYPVVADELPALIAKVLG 330 >gi|118464518|ref|YP_884016.1| periplasmic binding protein [Mycobacterium avium 104] gi|118165805|gb|ABK66702.1| Periplasmic binding protein [Mycobacterium avium 104] gi|336460181|gb|EGO39086.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Mycobacterium avium subsp. paratuberculosis S397] Length=317 Score = 488 bits (1256), Expect = 6e-136, Method: Compositional matrix adjust. Identities = 238/317 (76%), Positives = 281/317 (89%), Gaps = 0/317 (0%) Query 13 VAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLA 72 +A A A GL AGCS+ +PPPG G +VT+THLFGQTV+KEPPKRVVSAGYTEQDDLLA Sbjct 1 MAATAGAAGLSAGCSAHQPPPGGAGPGSVTVTHLFGQTVVKEPPKRVVSAGYTEQDDLLA 60 Query 73 VDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAG 132 V VVPIAVT+WFGDQPFAVWPWAA KLGGA+P VLNLDNGI +D+IA LKPDLIVAINAG Sbjct 61 VGVVPIAVTNWFGDQPFAVWPWAADKLGGAQPTVLNLDNGIPVDQIAGLKPDLIVAINAG 120 Query 133 VDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVA 192 +DADTYQ+LSAIAPTVAQS GDAFFEPWK+QA ++GQAVFAA++M+SL+ VDQKF + Sbjct 121 LDADTYQKLSAIAPTVAQSDGDAFFEPWKEQAAAVGQAVFAAEKMKSLVAGVDQKFTDIG 180 Query 193 QRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRD 252 +++P+W GKKALL+ G LWQG VVAT+AGWRTDFLN MGLVIADSIKPF DQR VIPRD Sbjct 181 KKNPQWTGKKALLMHGALWQGTVVATMAGWRTDFLNQMGLVIADSIKPFGTDQRAVIPRD 240 Query 253 HIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLS 312 HIK+VL++ADV+IW T++P+D+KALLADPE+A S TAQ RHIFT+K+QAGAIAF+S LS Sbjct 241 HIKSVLESADVVIWTTQNPDDQKALLADPEVAGSLTTAQNRHIFTTKDQAGAIAFASPLS 300 Query 313 YPVVAEQLPPQISQILG 329 YPV+A+QLPPQ+++ILG Sbjct 301 YPVIADQLPPQLTKILG 317 >gi|296167542|ref|ZP_06849894.1| iron(III) ABC superfamily ATP binding cassette transporter, binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897164|gb|EFG76773.1| iron(III) ABC superfamily ATP binding cassette transporter, binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=322 Score = 486 bits (1250), Expect = 2e-135, Method: Compositional matrix adjust. Identities = 235/304 (78%), Positives = 266/304 (88%), Gaps = 0/304 (0%) Query 26 CSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFG 85 CS+ P GG +VTI HLFGQTVIKEPPKRVVSAGYTEQDDLLAV VVPIAVT+WFG Sbjct 19 CSARTPSSDASGGKSVTINHLFGQTVIKEPPKRVVSAGYTEQDDLLAVGVVPIAVTNWFG 78 Query 86 DQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIA 145 DQPFAVWPWA PKLG A+P VLNLDNGI +D+IA LKPDLIVA+NAGVDADTYQ+LSAIA Sbjct 79 DQPFAVWPWAQPKLGRAQPVVLNLDNGIPVDQIAGLKPDLIVAVNAGVDADTYQKLSAIA 138 Query 146 PTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALL 205 PTV QS GDAFFEPWK+QA ++GQAVF A +M+SL++AVDQKF AV + HP W GKKALL Sbjct 139 PTVPQSDGDAFFEPWKEQAAAVGQAVFQAGQMKSLVDAVDQKFTAVGKEHPVWTGKKALL 198 Query 206 LQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLI 265 +QG LWQG VVAT+AGWRTDFLN MGLVI+DSIKPF D R VIPRDH+K VLD+ADV+I Sbjct 199 MQGTLWQGTVVATMAGWRTDFLNQMGLVISDSIKPFGNDHRAVIPRDHVKTVLDSADVII 258 Query 266 WMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQIS 325 W TE+P+D+KALLADP++AASQATAQ RHIFT+KEQAGAIAFSS LSYP+VA+QLPP I Sbjct 259 WTTENPDDQKALLADPDVAASQATAQSRHIFTTKEQAGAIAFSSPLSYPLVADQLPPLIG 318 Query 326 QILG 329 +ILG Sbjct 319 RILG 322 >gi|41409808|ref|NP_962644.1| hypothetical protein MAP3710c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398640|gb|AAS06260.1| FecB2 [Mycobacterium avium subsp. paratuberculosis K-10] Length=335 Score = 486 bits (1250), Expect = 3e-135, Method: Compositional matrix adjust. Identities = 243/335 (73%), Positives = 288/335 (86%), Gaps = 6/335 (1%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAG------CSSPKPPPGTPGGAAVTITHLFGQTVIKE 54 +RQG +RRGFLQ+A AA CS+ +PPPG G +VT+THLFGQTV+KE Sbjct 1 MRQGWNRRGFLQLAGAAGVAATAGAAGLSAGCSAHQPPPGGAGPGSVTVTHLFGQTVVKE 60 Query 55 PPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQ 114 PPKRVVSAGYTEQDDLLAV VVPIAVT+WFGDQPFAVWPWAA KLGGA+P VLNLDNGI Sbjct 61 PPKRVVSAGYTEQDDLLAVGVVPIAVTNWFGDQPFAVWPWAADKLGGAQPTVLNLDNGIP 120 Query 115 IDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAA 174 +D+IA LKPDLIVAINAG+DADTYQ+LSAIAPTVAQS GDAFFEPWK+QA ++GQAVFAA Sbjct 121 VDQIAGLKPDLIVAINAGLDADTYQKLSAIAPTVAQSDGDAFFEPWKEQAAAVGQAVFAA 180 Query 175 DRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVI 234 ++M+SL+ VDQKF + +++P+W GKKALL+ G LWQG VVAT+AGWRTDFLN MGLVI Sbjct 181 EKMKSLVAGVDQKFTDIGKKNPQWTGKKALLMHGALWQGTVVATMAGWRTDFLNQMGLVI 240 Query 235 ADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRH 294 ADSIKPF DQR VIPRDHIK+VL++ADV+IW T++P+D+KALLADPE+A S TAQ RH Sbjct 241 ADSIKPFGTDQRAVIPRDHIKSVLESADVVIWTTQNPDDQKALLADPEVAGSLTTAQNRH 300 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQILG 329 IFT+K+QAGAIAF+S LSYPV+A+QLPPQ+++ILG Sbjct 301 IFTTKDQAGAIAFASPLSYPVIADQLPPQLTKILG 335 >gi|254777336|ref|ZP_05218852.1| periplasmic binding protein [Mycobacterium avium subsp. avium ATCC 25291] Length=317 Score = 484 bits (1245), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 237/317 (75%), Positives = 280/317 (89%), Gaps = 0/317 (0%) Query 13 VAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLA 72 +A A A GL AGCS+ +PPPG G +VT+THLFGQTV+KEPPKRVVSAGYTEQDDLLA Sbjct 1 MAATAGAAGLSAGCSAHQPPPGGAGPGSVTLTHLFGQTVVKEPPKRVVSAGYTEQDDLLA 60 Query 73 VDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAG 132 V VVPIAVT+WFGDQPFAVWPWAA KLGGA+P VLNLDNGI +D+IA LKPDLIVAINAG Sbjct 61 VGVVPIAVTNWFGDQPFAVWPWAADKLGGAQPTVLNLDNGIPVDQIAGLKPDLIVAINAG 120 Query 133 VDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVA 192 +DADTYQ+LSAIAPTVAQS GDAFFEPWK+QA ++GQAVFAA++M+ L+ VDQKF + Sbjct 121 LDADTYQKLSAIAPTVAQSDGDAFFEPWKEQAAAVGQAVFAAEKMKPLVAGVDQKFTDIG 180 Query 193 QRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRD 252 +++P+W GKKALL+ G LWQG VVAT+AGWRTDFLN MGLVIADSIKPF DQR VIPRD Sbjct 181 KKNPQWTGKKALLMHGALWQGTVVATMAGWRTDFLNQMGLVIADSIKPFDTDQRAVIPRD 240 Query 253 HIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLS 312 HIK+VL++ADV+IW T++P+D+KALLADPE+A S TAQ RHIFT+K+QAGAIAF+S LS Sbjct 241 HIKSVLESADVVIWTTQNPDDQKALLADPEVAGSLTTAQNRHIFTTKDQAGAIAFASPLS 300 Query 313 YPVVAEQLPPQISQILG 329 YPV+A+QLPPQ+++ILG Sbjct 301 YPVIADQLPPQLTKILG 317 >gi|342859263|ref|ZP_08715917.1| periplasmic binding protein [Mycobacterium colombiense CECT 3035] gi|342133504|gb|EGT86707.1| periplasmic binding protein [Mycobacterium colombiense CECT 3035] Length=324 Score = 476 bits (1225), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 227/307 (74%), Positives = 270/307 (88%), Gaps = 3/307 (0%) Query 24 AGCSSPKPPPG-TPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTD 82 +GCSS K PG TPG +VT+THLFG+TVIKEPPKRVVSAGYTEQDDLLAV VVPIAVT+ Sbjct 20 SGCSSRKSAPGATPG--SVTVTHLFGETVIKEPPKRVVSAGYTEQDDLLAVGVVPIAVTN 77 Query 83 WFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLS 142 WFGDQP AVWPWA PKLGG +P VLNLDNGI +D+IA LKPDLIVA+NAG+DADTYQ+LS Sbjct 78 WFGDQPSAVWPWATPKLGGEQPTVLNLDNGIPVDQIAGLKPDLIVAVNAGLDADTYQKLS 137 Query 143 AIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKK 202 AIAPTVAQS GDAFFEPWK+QA ++GQAVF +D+M+SLI+ VDQKF + +++ +W GKK Sbjct 138 AIAPTVAQSDGDAFFEPWKEQATTVGQAVFKSDQMKSLIDGVDQKFTDIGKKNQQWTGKK 197 Query 203 ALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAAD 262 ALL+ G LW G VVAT+AGWRTDFLN MGLVI+D+IKPF DQR VIPRDHIK+VL++AD Sbjct 198 ALLMHGALWHGTVVATMAGWRTDFLNQMGLVISDTIKPFGTDQRAVIPRDHIKSVLESAD 257 Query 263 VLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPP 322 V+IW T+SP+D+KA+LADPE+A S TAQ RHIFT+K+QAGAIAF+S LSYPV+A+QLPP Sbjct 258 VVIWTTQSPDDQKAILADPEVAGSLTTAQNRHIFTTKDQAGAIAFASPLSYPVIADQLPP 317 Query 323 QISQILG 329 I++ILG Sbjct 318 LITKILG 324 >gi|254820794|ref|ZP_05225795.1| periplasmic binding protein [Mycobacterium intracellulare ATCC 13950] Length=289 Score = 476 bits (1224), Expect = 3e-132, Method: Compositional matrix adjust. Identities = 226/289 (79%), Positives = 262/289 (91%), Gaps = 0/289 (0%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 +T+THLFGQTVIKEPPKRVVSAG+TEQDDLLAV VVPIAVT+WFGDQPFAVWPWAAPKLG Sbjct 1 MTLTHLFGQTVIKEPPKRVVSAGFTEQDDLLAVGVVPIAVTNWFGDQPFAVWPWAAPKLG 60 Query 101 GARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPW 160 GARP VLNLDNGI +D+IA LKPDLIVA+NAG+DADTYQ+LSAIAPTVAQSGGDAFFEPW Sbjct 61 GARPVVLNLDNGIPVDQIAGLKPDLIVAVNAGLDADTYQKLSAIAPTVAQSGGDAFFEPW 120 Query 161 KDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLA 220 K+QA ++GQAVF AD+M+SL++ VDQKF V +R+P+W GKKALL+ G LWQG VVAT+A Sbjct 121 KEQAAAVGQAVFQADQMKSLVDGVDQKFTDVGKRNPQWTGKKALLMHGALWQGTVVATMA 180 Query 221 GWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLAD 280 GWRTDFLN MGLVIADS+KPF DQR VIPRDHIK+VLD+ADV+IW T +P+D+KALLAD Sbjct 181 GWRTDFLNQMGLVIADSVKPFGTDQRAVIPRDHIKSVLDSADVVIWTTRNPDDQKALLAD 240 Query 281 PEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQILG 329 PE+A S TAQ RHIFT+ EQAGAIAF+S LSYP+VA+QLPP +++ILG Sbjct 241 PEVAGSLTTAQNRHIFTTAEQAGAIAFASPLSYPLVADQLPPLLAKILG 289 >gi|240168485|ref|ZP_04747144.1| periplasmic iron-transport lipoprotein [Mycobacterium kansasii ATCC 12478] Length=289 Score = 441 bits (1134), Expect = 8e-122, Method: Compositional matrix adjust. Identities = 223/289 (78%), Positives = 259/289 (90%), Gaps = 0/289 (0%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 +TITHLFG+TV+KEPP RVVSAG TEQDDLLAV VVPIAVT+WFGDQPFAVWPWA PKLG Sbjct 1 MTITHLFGKTVVKEPPTRVVSAGLTEQDDLLAVGVVPIAVTNWFGDQPFAVWPWAQPKLG 60 Query 101 GARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPW 160 A+P VLNLDNGI +D+IA LKPDLIVAINAGVDADTYQ+LSAIAPT+ QS GDAFFEPW Sbjct 61 AAQPVVLNLDNGIAVDQIAGLKPDLIVAINAGVDADTYQKLSAIAPTIPQSDGDAFFEPW 120 Query 161 KDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLA 220 KDQA +IGQAVF AD+M++LI+ VD+KF VA+R+P+W+GKKALLLQGRL QGNV+AT+A Sbjct 121 KDQATTIGQAVFQADQMKALIDDVDRKFVEVAERNPQWKGKKALLLQGRLRQGNVIATMA 180 Query 221 GWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLAD 280 GWRTDFLN MGLV++D+IKP+A D VIP +HIK VLD+ADVLIW TESPED++ALLAD Sbjct 181 GWRTDFLNQMGLVVSDAIKPYAADHVAVIPPEHIKDVLDSADVLIWSTESPEDQQALLAD 240 Query 281 PEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQILG 329 P IAA+ ATAQ+RHIFT+K+ AGAIAF+S LSYP+VA+QLPPQI ILG Sbjct 241 PAIAAAGATAQKRHIFTTKDLAGAIAFASPLSYPLVADQLPPQIGAILG 289 >gi|118469408|ref|YP_884851.1| periplasmic binding protein [Mycobacterium smegmatis str. MC2 155] gi|118170695|gb|ABK71591.1| Periplasmic binding protein [Mycobacterium smegmatis str. MC2 155] Length=317 Score = 375 bits (962), Expect = 7e-102, Method: Compositional matrix adjust. Identities = 199/325 (62%), Positives = 236/325 (73%), Gaps = 12/325 (3%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGY 64 +RRGFL V A L A CS+ KP G+ VT+ H FG T I PP+RVVSAG Sbjct 5 LTRRGFLAVT---AGLALVAACSTDKPGEVADDGS-VTVRHAFGDTTIPGPPQRVVSAGL 60 Query 65 TEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPD 124 TEQDDLLAV VVPIAVTDWFG +PF VWPWA +L GA+PAVLNLDNGI ++ IAALKPD Sbjct 61 TEQDDLLAVGVVPIAVTDWFGGEPFGVWPWAQRQLAGAQPAVLNLDNGIPVEEIAALKPD 120 Query 125 LIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAV 184 LIVA NAG+DADTY +LS IAPTVAQ+G +AFFEPWKDQA IGQAVF M LI++V Sbjct 121 LIVATNAGLDADTYAKLSEIAPTVAQTGSEAFFEPWKDQATIIGQAVFKNAEMTELIKSV 180 Query 185 DQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVD 244 D +F V HP++ GKKALLL G L++G V AT GWRTDFL MGL + + Sbjct 181 DDRFTTVKTDHPQFSGKKALLLGGTLYRGGVQATPPGWRTDFLTQMGLTV--------LQ 232 Query 245 QRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGA 304 +IPRD I +VLD ADVLIW TES +D ALLADP +A AT + R+IFT+KE AGA Sbjct 233 VPALIPRDEIASVLDGADVLIWTTESDQDRDALLADPIVAQLAATRRDRNIFTTKELAGA 292 Query 305 IAFSSVLSYPVVAEQLPPQISQILG 329 IAF+S LSYPVVA+QLPP+++++LG Sbjct 293 IAFASPLSYPVVADQLPPELARVLG 317 >gi|108797250|ref|YP_637447.1| twin-arginine translocation pathway signal [Mycobacterium sp. MCS] gi|119866335|ref|YP_936287.1| periplasmic binding protein [Mycobacterium sp. KMS] gi|126432873|ref|YP_001068564.1| periplasmic binding protein [Mycobacterium sp. JLS] gi|108767669|gb|ABG06391.1| Twin-arginine translocation pathway signal [Mycobacterium sp. MCS] gi|119692424|gb|ABL89497.1| periplasmic binding protein [Mycobacterium sp. KMS] gi|126232673|gb|ABN96073.1| periplasmic binding protein [Mycobacterium sp. JLS] Length=321 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 195/323 (61%), Positives = 232/323 (72%), Gaps = 8/323 (2%) Query 6 SRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYT 65 SRR FL + A + + AGC P G+ VT+TH FG+T I PP RVVSAG T Sbjct 6 SRRNFLAMTATLAGSTVLAGCGGDAPGTVAKDGS-VTVTHAFGETRIPGPPTRVVSAGLT 64 Query 66 EQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDL 125 EQDDLLAV+VVPIAVTDWFG +PF VWPWA +LG A+P VL+L +GIQI+ I AL PDL Sbjct 65 EQDDLLAVEVVPIAVTDWFGGEPFGVWPWARGQLGPAQPTVLSLGDGIQIEAIRALNPDL 124 Query 126 IVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVD 185 IVA NAG+DADTY LS IAPTVAQSG AFFEPWKDQA IGQAVF AD M +LI VD Sbjct 125 IVATNAGLDADTYTTLSEIAPTVAQSGSAAFFEPWKDQATIIGQAVFKADEMAALIARVD 184 Query 186 QKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQ 245 +KF A +P++ GKKALLL+G L++ +V A GWRTDFL MG +AD P Sbjct 185 EKFTNAASANPQFGGKKALLLRGPLYRDSVQAVRPGWRTDFLTQMGFTVADPGDP----- 239 Query 246 RGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAI 305 +IPRD + +VLDAADVLIW TES +++ ALLADP IA +A A R IFT KE AGAI Sbjct 240 --LIPRDRMASVLDAADVLIWTTESEQEQGALLADPTIAGLKAVAGGRTIFTDKELAGAI 297 Query 306 AFSSVLSYPVVAEQLPPQISQIL 328 AF+S LSYP+VA++LPP ++QIL Sbjct 298 AFASPLSYPLVADRLPPLLAQIL 320 >gi|333988890|ref|YP_004521504.1| iron ABC transporter periplasmic protein [Mycobacterium sp. JDM601] gi|333484858|gb|AEF34250.1| periplasmic iron-transport lipoprotein [Mycobacterium sp. JDM601] Length=315 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 198/330 (60%), Positives = 238/330 (73%), Gaps = 16/330 (4%) Query 1 VRQGCSRRGFLQVAEAAAATGLFAGCSS-PKPPPGTPGGAAVTITHLFGQTVIKEPPKRV 59 +R SRRGF + AA L A CSS + G PG VTI HLFG+T + EPPKRV Sbjct 1 MRDQWSRRGFFGLCGAAGGAALLAACSSRDQSDGGAPG--PVTIAHLFGETTVPEPPKRV 58 Query 60 VSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIA 119 V AGYT QDDLLA+ VVPIA+T+WFGDQPFAVWPWA +LG A P VL+LDNGI + +IA Sbjct 59 VCAGYTGQDDLLALGVVPIAITNWFGDQPFAVWPWAQQRLGDAEPTVLDLDNGIAVAQIA 118 Query 120 ALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRS 179 LKPDLI+A NAGVDADTYQ+LSAIAPTV QSGGDAFFEPWK QA +IGQAV A +MR Sbjct 119 ELKPDLIIATNAGVDADTYQKLSAIAPTVPQSGGDAFFEPWKTQAAAIGQAVHQAQQMRE 178 Query 180 LIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIK 239 L++ VD +FA VA HP ++GK LLL GRL GNV A GWR +FL MGL +AD+ Sbjct 179 LVDGVDARFAEVAAAHPGFKGKTVLLLAGRLDHGNVAAG-TGWRAEFLARMGLTLADA-- 235 Query 240 PFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSK 299 VI D I +VL AADVLIW T+S ++ ALL DP+IAA ++ R +FT+K Sbjct 236 ------PAVIEHDRIGSVLPAADVLIWTTDSDDERGALLDDPDIAAYES----RSVFTTK 285 Query 300 EQAGAIAFSSVLSYPVVAEQLPPQISQILG 329 EQAGAIAF+S LSYP+VA+QLP I++++G Sbjct 286 EQAGAIAFASPLSYPLVADQLPGLIAKVIG 315 >gi|120401334|ref|YP_951163.1| periplasmic binding protein [Mycobacterium vanbaalenii PYR-1] gi|119954152|gb|ABM11157.1| periplasmic binding protein [Mycobacterium vanbaalenii PYR-1] Length=316 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 181/323 (57%), Positives = 226/323 (70%), Gaps = 13/323 (4%) Query 7 RRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTE 66 RR FL ++ AAA L C S KP G+ VT+ H FG+T I +PP RVVSAG T+ Sbjct 7 RRRFLTMSAGAAA--LLTACGSEKPGAIASDGS-VTVRHAFGETKIPKPPTRVVSAGLTD 63 Query 67 QDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLI 126 DDLLA+ VVPIAVTDWFG +PF VWPWA P+LGGA+P VL+L +GIQ+++IA L PDLI Sbjct 64 ADDLLALGVVPIAVTDWFGAEPFGVWPWAQPRLGGAQPVVLSLADGIQVEQIAGLTPDLI 123 Query 127 VAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQ 186 VA +AG+D DTY +LS IAPT+AQSG AFFEPW+DQA +IGQAV D M+ LI VD Sbjct 124 VATDAGLDQDTYTRLSEIAPTIAQSGSAAFFEPWRDQAGAIGQAVLRHDDMQKLITDVDA 183 Query 187 KFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQR 246 KF V HP++ GKKALLL G L++ +V + WR +FL MGL + ++ Sbjct 184 KFTGVKDSHPQFAGKKALLLAGTLFRDSVQVSGPSWRHEFLTQMGLTVLET-------DD 236 Query 247 GVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIA 306 +IPRD I VL AADVLIW TES +++ ALLADP IA A RRH+FT KE AGAIA Sbjct 237 ALIPRDRIAEVLGAADVLIWTTESDQEQAALLADPAIAGIPA---RRHVFTGKELAGAIA 293 Query 307 FSSVLSYPVVAEQLPPQISQILG 329 ++S LSYPVVA++LPP ++ +G Sbjct 294 YASTLSYPVVADRLPPMLAAAVG 316 >gi|315442049|ref|YP_004074928.1| ABC-type Fe3+-hydroxamate transporter, periplasmic component [Mycobacterium sp. Spyr1] gi|315260352|gb|ADT97093.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Mycobacterium sp. Spyr1] Length=318 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 177/324 (55%), Positives = 223/324 (69%), Gaps = 13/324 (4%) Query 6 SRRGFLQVAEAAAATGLFAGCSSPKPPPGT-PGGAAVTITHLFGQTVIKEPPKRVVSAGY 64 SRR FL + AAAT G + PGT G +VT+ H+FG+T I PP RVVSAG Sbjct 6 SRRSFLGLTAGAAATLTACG----QDKPGTVAGDGSVTVAHVFGETKIPVPPTRVVSAGL 61 Query 65 TEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPD 124 T+ DDLLA+ VVPIAVTDWFG +PF VWPWA P+LG A+P VL+L +G+Q+++IA+L PD Sbjct 62 TDADDLLALGVVPIAVTDWFGAEPFGVWPWARPQLGAAQPVVLSLADGVQVEQIASLNPD 121 Query 125 LIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAV 184 LI+A +AG+D DTY +LS IAPTVAQSG AFFEPW+DQA +IGQAVF D M+ LI V Sbjct 122 LIIATDAGLDQDTYTRLSQIAPTVAQSGRAAFFEPWRDQATAIGQAVFRHDDMQKLIADV 181 Query 185 DQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVD 244 D +F+A HP + GK ALLL G + V T WR +FL MGL + +D Sbjct 182 DAQFSAAKDAHPEFSGKTALLLAGSVTGDGVRVTGPAWRREFLTAMGLTV--------LD 233 Query 245 QRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGA 304 IPRD + VLD ADVLIW TES E++ +LLADP IA +AT + H+FT KE AGA Sbjct 234 TDDEIPRDRMPDVLDEADVLIWTTESDEEQASLLADPAIADLRATTRSSHVFTGKELAGA 293 Query 305 IAFSSVLSYPVVAEQLPPQISQIL 328 IA++S LSYPV+A++LPP ++ L Sbjct 294 IAYASTLSYPVLADRLPPMLADAL 317 >gi|145220979|ref|YP_001131657.1| periplasmic binding protein [Mycobacterium gilvum PYR-GCK] gi|145213465|gb|ABP42869.1| periplasmic binding protein [Mycobacterium gilvum PYR-GCK] Length=315 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 177/324 (55%), Positives = 223/324 (69%), Gaps = 13/324 (4%) Query 6 SRRGFLQVAEAAAATGLFAGCSSPKPPPGT-PGGAAVTITHLFGQTVIKEPPKRVVSAGY 64 SRR FL + AAAT G + PGT G +VT+ H+FG+T I PP RVVSAG Sbjct 3 SRRSFLGLTAGAAATLTACG----QDKPGTVAGDGSVTVAHVFGETKIPVPPTRVVSAGL 58 Query 65 TEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPD 124 T+ DDLLA+ VVPIAVTDWFG +PF VWPWA P+LG A+P VL+L +G+Q+++IA+L PD Sbjct 59 TDADDLLALGVVPIAVTDWFGAEPFGVWPWARPQLGAAQPVVLSLADGVQVEQIASLNPD 118 Query 125 LIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAV 184 LI+A +AG+D DTY +LS IAPTVAQSG AFFEPW+DQA +IGQAVF D M+ LI V Sbjct 119 LIIATDAGLDQDTYTRLSQIAPTVAQSGRAAFFEPWRDQATAIGQAVFRHDDMQKLIADV 178 Query 185 DQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVD 244 D +F+A HP + GK ALLL G + V T WR +FL MGL + +D Sbjct 179 DAQFSAAKDAHPEFSGKTALLLAGSVTGDGVRVTGPAWRREFLTAMGLTV--------LD 230 Query 245 QRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGA 304 IPRD + VLD ADVLIW TES E++ +LLADP IA +AT + H+FT KE AGA Sbjct 231 TDDEIPRDRMPDVLDEADVLIWTTESDEEQASLLADPAIADLRATTRSSHVFTGKELAGA 290 Query 305 IAFSSVLSYPVVAEQLPPQISQIL 328 IA++S LSYPV+A++LPP ++ L Sbjct 291 IAYASTLSYPVLADRLPPMLADAL 314 >gi|169631466|ref|YP_001705115.1| ABC transporter periplasmic substrate-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243433|emb|CAM64461.1| Putative ABC transporter, periplasmic substrate-binding [Mycobacterium abscessus] Length=330 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 156/305 (52%), Positives = 202/305 (67%), Gaps = 2/305 (0%) Query 26 CSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFG 85 C+ P G A I H FG T +K PPKR++SAGYT D LLA+ +VP+AVT+W+G Sbjct 27 CAKESAPTSERDGTAF-IKHAFGTTEVKAPPKRIISAGYTGHDYLLALGIVPVAVTEWYG 85 Query 86 DQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIA 145 PFA WPWA +LGGA P VL L +G+ ID+IA+LKPDLIVA +AG+D DTY +LS IA Sbjct 86 GFPFATWPWATERLGGATPEVLTLTDGLMIDKIASLKPDLIVAADAGLDQDTYTKLSGIA 145 Query 146 PTVAQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALL 205 PT+AQ+G AFFEPWKDQA++IGQAVF M ++++AVD KF++ A H ++ KKA+ Sbjct 146 PTIAQAGKYAFFEPWKDQAKAIGQAVFKPAEMDAVVKAVDNKFSSAASAHTGFKDKKAIY 205 Query 206 LQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAV-DQRGVIPRDHIKAVLDAADVL 264 LQG L G +A +G RT FL+ +GL+ ++ +A DQ + D + VL ADVL Sbjct 206 LQGELLDGQAIAFRSGPRTGFLSGLGLITPPDLETYAKGDQLAYLAADRLSTVLAEADVL 265 Query 265 IWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQI 324 +W TES E AL ADP I + R IFTSKE GAI FSS LS V + L PQ+ Sbjct 266 LWGTESDEQIAALKADPAITTLGPSLLDRSIFTSKELGGAINFSSPLSLTYVVDNLVPQL 325 Query 325 SQILG 329 ++ILG Sbjct 326 ARILG 330 >gi|336120666|ref|YP_004575452.1| putative ABC transporter substrate-binding protein [Microlunatus phosphovorus NM-1] gi|334688464|dbj|BAK38049.1| putative ABC transporter substrate-binding protein [Microlunatus phosphovorus NM-1] Length=350 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/336 (41%), Positives = 195/336 (59%), Gaps = 11/336 (3%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPP-----PGTPGGAA--VTITHLFGQTVIKEPPK 57 SRR L + +AA A C+S P P P A VT+TH +G TV+ P+ Sbjct 16 VSRRLLLGGSLSAALVAGLAACNSSAAPAGEEQPSAPAAAVFPVTVTHKYGDTVVPTAPE 75 Query 58 RVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDR 117 R+V G+TEQD LLA+ + P+A T+W+GDQP+AVWPWA KLG A+P V+ + + +++ Sbjct 76 RIVVVGFTEQDILLALGITPVATTEWYGDQPYAVWPWATSKLGEAKPEVIRAPDKLPLEK 135 Query 118 IAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGG--DAFFEPWKDQARSIGQAVFAAD 175 IAAL PDLI+ NAG+ + Y LS IAPT+A SG +FEPW Q +G+AV Sbjct 136 IAALTPDLIIGTNAGLSKEVYDSLSKIAPTIANSGKYDSDWFEPWPVQTLLVGKAVGKEA 195 Query 176 RMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIA 235 + L++ + ++FA A H ++ G A+ LQ ++G+ +A G TDFL D+G VI Sbjct 196 EAQQLVDELTKRFADTAASHQQFAGVPAIFLQSPYYEGHAIAYQDGLSTDFLTDLGFVIP 255 Query 236 DSIKPFAVD-QRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRH 294 + + D ++ IP + + VL+A DVLIW TE+ + E L + +A R Sbjct 256 KELDAYERDGEQAFIPVEKLD-VLNAGDVLIWATENDKSEAELAKNKLFGQLEAVKAGRS 314 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 I+T E AGAI F++VLS P V + L PQ+ + L A Sbjct 315 IYTGAELAGAIYFATVLSLPYVLDALVPQLEKALPA 350 >gi|336120665|ref|YP_004575451.1| putative ABC transporter substrate-binding protein [Microlunatus phosphovorus NM-1] gi|334688463|dbj|BAK38048.1| putative ABC transporter substrate-binding protein [Microlunatus phosphovorus NM-1] Length=348 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 136/342 (40%), Positives = 188/342 (55%), Gaps = 17/342 (4%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPK---------PPPGTPGGAAVTITHLFGQTVIKEP 55 SRR FL + +A G A CS K P P + T+ H +G T IK Sbjct 8 LSRRLFLGGSLSAILLGGLAACSDKKVESSESPTGPSPASNPAFPATVEHKYGTTTIKAA 67 Query 56 PKRVVSAGYTEQDDLLAVDVVPIAVTD--WFGDQ-PFAVWPWAAPKLGGARPAVLNLDNG 112 P+R+V G+TEQD LLA+ V PIA T W GD + ++PWA KLG A+P VL+ G Sbjct 68 PQRIVVVGFTEQDALLALGVAPIATTTATWAGDDVEYNIYPWAKDKLGDAKPTVLDSTEG 127 Query 113 IQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSG--GDAFFEPWKDQARSIGQA 170 +Q D+I ALKPDLI+ NAG+ D Y +LS IAPT+A SG ++EPW Q IG+A Sbjct 128 LQYDQIKALKPDLIIGTNAGLSKDDYTELSKIAPTIANSGTYDSDWYEPWDTQTEMIGEA 187 Query 171 VFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDM 230 V + LI ++Q+FA HP+++G A +Q G+V+A AG +DFL D+ Sbjct 188 VGKVPEAKQLIADLNQRFADAQADHPKFQGVTAAFVQAPYTDGSVIAWPAGLSSDFLTDL 247 Query 231 GLVIADSIKPFAVDQ--RGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQA 288 G VI S+ F +Q + IP + K VL+ A VL+W E EDE + AD ++ A Sbjct 248 GFVIPKSLDKFVDEQVAQAEIPAEDTK-VLNDAKVLVWGNEGAEDEADIRADKVLSQLDA 306 Query 289 TAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQILGA 330 R +FT AI F S+LS P V + L P++ +++ A Sbjct 307 MKAGRVVFTGDTVTSAIYFGSILSIPYVLDALIPKLDEVVPA 348 >gi|323359541|ref|YP_004225937.1| iron hydroxamate ABC transporter periplasmic protein [Microbacterium testaceum StLB037] gi|323275912|dbj|BAJ76057.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Microbacterium testaceum StLB037] Length=351 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 119/289 (42%), Positives = 170/289 (59%), Gaps = 5/289 (1%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 VT+TH FG+T + P+RVV G TEQD LL + PIA T+W+G+QP+AVWPWA L Sbjct 53 VTVTHQFGETTVAAEPQRVVVVGLTEQDILLELGTPPIATTEWYGEQPYAVWPWATDLLN 112 Query 101 GARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQ-SGGDAFFEP 159 GA P VL+ +G + ++IA+L+PDLIV NA + AD Y +LSAIAPT+A G + +F Sbjct 113 GAEPTVLSATDGFEFEKIASLEPDLIVGTNANMTADDYTKLSAIAPTIASVPGAERYFSD 172 Query 160 WKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATL 219 WK Q R I QA+ + LI +++++AA A HP + GK A QG W+G++ Sbjct 173 WKGQTRQIAQAMGRSTEGEKLITGIEEQYAAAAAAHPEFAGKTASFSQGGPWEGSIYVYP 232 Query 220 AGWRTDFLNDMGLVIADSIKPFAVDQRG--VIPRDHIKAVLDAADVLIWMTESPEDEKAL 277 G TDFL D+G VI ++ + V Q G + +++D ADV+++ TES E L Sbjct 233 DGLNTDFLTDLGFVITPGLEKY-VQQEGAQALISGETMSLID-ADVIVFATESAESLPDL 290 Query 278 LADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQ 326 L + A R ++T E AGAI F + LS V + L P++ + Sbjct 291 LDFGTTRSLSAVTGGRAVYTDAELAGAIYFLTPLSQKYVIDHLVPRLEK 339 >gi|284043895|ref|YP_003394235.1| periplasmic binding protein [Conexibacter woesei DSM 14684] gi|283948116|gb|ADB50860.1| periplasmic binding protein [Conexibacter woesei DSM 14684] Length=351 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 114/289 (40%), Positives = 167/289 (58%), Gaps = 7/289 (2%) Query 42 TITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGG 101 T+ H FG T ++ P+R+V+ G TEQD +LA+ VPIA T+W+G++P AVWPWA+ LG Sbjct 55 TVEHKFGTTTVESAPRRIVTVGLTEQDTVLALGSVPIATTEWYGERPNAVWPWASAALGD 114 Query 102 ARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDA-FFEPW 160 A+P VL+ +G Q +RIAAL+PDLI+ NAG+ Y++LSA+APT+ + G +F W Sbjct 115 AKPEVLSNKDGFQFERIAALEPDLIIGTNAGMRRGDYEKLSALAPTITSAKGSTDYFSRW 174 Query 161 KDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLA 220 +Q I A+ ++ + L+ V +F+ A HP ++GK Q + G + + Sbjct 175 DEQVELIAAALGRPEQGQQLVRDVRARFSDAAAEHPEFKGKTVSFNQNGFYDGQIYSYPD 234 Query 221 GWRTDFLNDMGLVIADSIKPFAVD---QRGVIPRDHIKAVLDAADVLIWMTESPEDEKAL 277 G T+FL +G I + A Q GV VLD +DV ++ TE P+D KAL Sbjct 235 GLNTEFLTYLGFEIEPRVTALATKPGVQVGVSAERL--DVLD-SDVALFATEEPKDVKAL 291 Query 278 LADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQ 326 P + A+ R +FT AGAI F + LS VAEQLPPQ+++ Sbjct 292 EKIPTFMRMDSVARHRAVFTDGTLAGAIYFMTPLSLEYVAEQLPPQLAR 340 >gi|269839045|ref|YP_003323737.1| periplasmic binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269790775|gb|ACZ42915.1| periplasmic binding protein [Thermobaculum terrenum ATCC BAA-798] Length=662 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 108/290 (38%), Positives = 165/290 (57%), Gaps = 13/290 (4%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 VTI H +G+TVI++ PKRVV G+ +QD +LA+ V P+A+ DWFG+QP+ VWPWA +LG Sbjct 356 VTIEHKYGKTVIQKQPKRVVVIGFNDQDPVLALGVKPVAIRDWFGNQPYGVWPWARDELG 415 Query 101 GARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFF-EP 159 A+P +L + ++I+ALKPDLIV I++G+ Y+ LS IAPT+AQ G + P Sbjct 416 DAKPVLLP-SGDLNFEQISALKPDLIVGISSGMTDKDYRTLSKIAPTIAQPKGYVEYGTP 474 Query 160 WKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALL---LQGRLWQGNVV 216 W++Q R IG+A+ L+ V+ + AV +++P+ G L+ +G L+ V Sbjct 475 WQEQTRIIGRALGKEQEAEELVSKVEAQIEAVRRQYPQLEGATGLVAARFEGTLY----V 530 Query 217 ATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKA 276 R FL+ +G+ + + A DQ +LD D LIW+ +D + Sbjct 531 YGEQDSRGRFLSQLGMRMPKEVADLAADQFYATLSQERMDLLD-VDALIWLI-GDQDRRE 588 Query 277 LLADPEIAASQATAQRRHIF--TSKEQAGAIAFSSVLSYPVVAEQLPPQI 324 L +DP + + R IF ++ +GAI+FS+VLS P E L PQ+ Sbjct 589 LESDPIYTRLKVHTEGRDIFLDSNSTLSGAISFSTVLSIPYTLEHLVPQL 638 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/187 (32%), Positives = 79/187 (43%), Gaps = 33/187 (17%) Query 26 CSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFG 85 S P P A TI H G T + PKRVV E D + + V P+ + Sbjct 47 ASPASPTPEATQSATRTIKHAMGTTEVPAHPKRVVVLDTGELDTAMTLGVKPVGAVEAIA 106 Query 86 DQPFAVWPWAAPKLGGARPAVLNLDNGIQ---------IDRIAALKPDLIVAINAGVDAD 136 G PA L GIQ +++IAALKPDLI++ +A Sbjct 107 --------------GEGLPAYLQGTEGIQLVGTINEPNLEKIAALKPDLILSSKMRHEA- 151 Query 137 TYQQLSAIAPTV-AQSGGDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRH 195 Y+QLS IAPTV A+ G + E + AR++G+ A E V Q++ A Q Sbjct 152 IYKQLSQIAPTVFAERTGVTWKENFDLFARALGKEEEA--------ERVKQEYQAHVQEF 203 Query 196 PRWRGKK 202 R G + Sbjct 204 RRKMGDR 210 >gi|284029290|ref|YP_003379221.1| periplasmic binding protein [Kribbella flavida DSM 17836] gi|283808583|gb|ADB30422.1| periplasmic binding protein [Kribbella flavida DSM 17836] Length=343 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 111/295 (38%), Positives = 162/295 (55%), Gaps = 10/295 (3%) Query 37 GGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAA 96 G V+I + +G +K PKRVV+ G EQD LLA+ VVP+ T+WFG++P A++PWA Sbjct 42 GAFPVSIKNKYGTAELKAEPKRVVTVGLVEQDALLALGVVPVGTTEWFGEKPGALFPWAK 101 Query 97 PKLGGAR-PAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGG-D 154 KLG A+ P VL +GIQ ++IAAL PDLIV + +G+ AD YQ+L+AIAPTVAQ G Sbjct 102 EKLGDAQVPTVLRDKDGIQFEKIAALAPDLIVGMYSGISADDYQKLTAIAPTVAQPAGVP 161 Query 155 AFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGN 214 + W+D AR++GQAV + L++ ++Q+FA V HP ++ K AL+ ++G Sbjct 162 DYGVAWQDVARTVGQAVGKPRQADELVQGIEQRFATVRAEHPEFKDKPALM--ATPYEGY 219 Query 215 VVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDE 274 V R+ L D+G + + + G +LD L+W Sbjct 220 FVYGSQDPRSRLLTDLGFRLPSGLDQLLGGKFGGNLSAERITLLD-QQALVWFPTKGGTA 278 Query 275 KALLADPEIAASQATAQRRHIFTSKEQ----AGAIAFSSVLSYPVVAEQLPPQIS 325 K L DP Q R +F + GA +F SVLS P+V +QL P+++ Sbjct 279 K-LQNDPLYKNLAVRKQGRDVFVEENHDDALYGATSFVSVLSLPIVLDQLVPKLA 332 >gi|163849358|ref|YP_001637402.1| periplasmic binding protein [Chloroflexus aurantiacus J-10-fl] gi|222527354|ref|YP_002571825.1| periplasmic binding protein [Chloroflexus sp. Y-400-fl] gi|163670647|gb|ABY37013.1| periplasmic binding protein [Chloroflexus aurantiacus J-10-fl] gi|222451233|gb|ACM55499.1| periplasmic binding protein [Chloroflexus sp. Y-400-fl] Length=362 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/306 (38%), Positives = 168/306 (55%), Gaps = 17/306 (5%) Query 32 PPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAV 91 P T VTI H +G T I P+RV++ GYT+QD +LA+ V PIAV WFGD Sbjct 48 PASTVATFPVTIEHKYGSTTIPAAPQRVIALGYTDQDPILALGVRPIAVRYWFGDATRTA 107 Query 92 WPWAAPKLGGARPAVLNLDNG-IQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQ 150 WPW G RP VLN+ G + I+ IAAL PDLI+A++AG+ + Y LS IAPT+AQ Sbjct 108 WPWQEAAFGDVRPQVLNMPFGQLNIETIAALNPDLIIAVSAGITEEEYNTLSQIAPTLAQ 167 Query 151 SGGDAFFE---PWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQ 207 S DA+ + PW++Q R IGQA+ +++ +LI +++ +FA + Q++P++ G A++ Sbjct 168 S--DAYVDFGVPWQEQTRVIGQALGRSEQAEALISSIEARFAELRQQYPQFAGATAVIAS 225 Query 208 GRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQ-RGVIPRDHIKAVLDAADVLIW 266 + R FL +G V+ + A G I + + L DVLIW Sbjct 226 PANEGQFFFSGTQHERMRFLTSLGFVLPAELDQIASTSFFGSISGERLD--LFDTDVLIW 283 Query 267 MTESPEDEKALLADPEIAASQATAQRRHIF-------TSKEQAGAIAFSSVLSYPVVAEQ 319 T +PE + A+P +AT + R I+ S A+ +SSVLS P+V E+ Sbjct 284 -TVTPEQRAVIEANPLFQQLRATQEGRVIWLDSTGDAESDLVGPALVYSSVLSLPLVFEE 342 Query 320 LPPQIS 325 L PQ++ Sbjct 343 LVPQLA 348 >gi|312140353|ref|YP_004007689.1| substrate-binding lipoprotein [Rhodococcus equi 103S] gi|311889692|emb|CBH49009.1| putative substrate binding lipoprotein [Rhodococcus equi 103S] Length=337 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 181/334 (55%), Gaps = 18/334 (5%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGY 64 SRRGFL + + A A CSS G+ G + TITH +G+T + E P+R+VS GY Sbjct 11 ISRRGFL-IGSSGALLAFAAACSSGSGDGGSGGASGATITHKYGRTTVPENPQRIVSVGY 69 Query 65 TEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVL-NLDNGIQIDRIAALKP 123 +QD LLA+ VP+ V DW+G+ P+ VWPW+ P LG A+PA++ + GI ++++AA P Sbjct 70 NDQDALLALGAVPVGVFDWYGNYPYGVWPWSQPLLGDAQPAIIGSASTGIDVEKVAAAAP 129 Query 124 DLIVAINAGVDADTYQQLSAIAPTVAQSGGDA-FFEPWKDQARSIGQAVFAADRMRSLIE 182 DLIV +G+ Y +LSA+APTVAQ G A + W+DQ +G+A+ DR L+ Sbjct 130 DLIVGTYSGLTQGQYDKLSALAPTVAQPAGVADYGVRWQDQTTILGEALGKQDRAAELVA 189 Query 183 AVDQKFAAVAQRHPRWRGKKALL--LQGRLWQGNVVATLAGWRTDFLNDMGLV---IADS 237 V Q+F VA +P + GK L+ L+G G V + F ++G V +A+ Sbjct 190 GVQQRFTDVAAANPSFAGKTVLVGALKGPGQFG--VYGPEDPKVRFFTELGFVNPPVAEQ 247 Query 238 IKPFAVDQRGVIPRDHIKAVLDAADVLIWMTES--PEDEKALLAD-PEIAASQATAQRRH 294 ++ + I + + L D+L+W +D +A LA P R Sbjct 248 VRKTNFAE---ISTEQLS--LADVDLLVWYAGGGFGDDLRAELAKTPVYQTLDVVKDGRT 302 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQIL 328 I E A A+A+S+V+S P +Q+PP+I+ + Sbjct 303 IVLEDEAAEAMAWSTVVSLPYALDQIPPRIAPLF 336 >gi|325676037|ref|ZP_08155720.1| iron ABC superfamily ATP binding cassette transporter periplasmic-binding protein [Rhodococcus equi ATCC 33707] gi|325553275|gb|EGD22954.1| iron ABC superfamily ATP binding cassette transporter periplasmic-binding protein [Rhodococcus equi ATCC 33707] Length=347 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 181/334 (55%), Gaps = 18/334 (5%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGY 64 SRRGFL + + A A CSS G+ G + TITH +G+T + E P+R+VS GY Sbjct 21 ISRRGFL-IGSSGALLAFAAACSSGSDDGGSGGASGATITHKYGRTTVPENPQRIVSVGY 79 Query 65 TEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVL-NLDNGIQIDRIAALKP 123 +QD LLA+ VP+ V DW+G+ P+ VWPW+ P LG A+PA++ + GI ++++AA P Sbjct 80 NDQDALLALGAVPVGVFDWYGNYPYGVWPWSQPLLGDAQPAIIGSASTGIDVEKVAAAAP 139 Query 124 DLIVAINAGVDADTYQQLSAIAPTVAQSGGDA-FFEPWKDQARSIGQAVFAADRMRSLIE 182 DLIV +G+ Y +LSA+APTVAQ G A + W+DQ +G+A+ DR L+ Sbjct 140 DLIVGTYSGLTQGQYDKLSALAPTVAQPAGVADYGVRWQDQTTILGEALGKQDRAAELVA 199 Query 183 AVDQKFAAVAQRHPRWRGKKALL--LQGRLWQGNVVATLAGWRTDFLNDMGLV---IADS 237 V Q+F VA +P + GK L+ L+G G V + F ++G V +A+ Sbjct 200 GVQQRFTDVAAANPSFAGKTVLVGALKGPGQFG--VYGPEDPKVRFFTELGFVNPPVAEQ 257 Query 238 IKPFAVDQRGVIPRDHIKAVLDAADVLIWMTES--PEDEKALLAD-PEIAASQATAQRRH 294 ++ + I + + L D+L+W +D +A LA P R Sbjct 258 VRKTNFAE---ISTEQLS--LADVDLLVWYAGGGFGDDLRAELAKTPVYQTLDVVKDGRT 312 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQIL 328 I E A A+A+S+V+S P +Q+PP+I+ + Sbjct 313 IVLEDEAAEAMAWSTVVSLPYALDQIPPRIAPLF 346 >gi|257056274|ref|YP_003134106.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Saccharomonospora viridis DSM 43017] gi|256586146|gb|ACU97279.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Saccharomonospora viridis DSM 43017] Length=345 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/315 (36%), Positives = 163/315 (52%), Gaps = 16/315 (5%) Query 20 TGLFAGCSSP-----KPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVD 74 TG G SP + P VTI H FG T I +PP+RVVS G T+ D LLA+ Sbjct 24 TGCSGGGESPSAEDTRAVETEPDALPVTIEHRFGSTTITDPPRRVVSVGLTDHDALLALG 83 Query 75 VVPIAVTDWFGDQPFAVWPWAAPKLGGA-RPAVLNLDNGIQIDRIAALKPDLIVAINAGV 133 V P+A T WFGD P A+ PWA LG A P VL+ NGIQ +RIA L+PDLI+ + + + Sbjct 84 VTPVATTRWFGDYPGAIGPWAREALGDAPDPVVLHNQNGIQFERIAELEPDLILGLYSEL 143 Query 134 DADTYQQLSAIAPTVAQSGGDAFFE-PWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVA 192 Y LS IAPT+A G + W++ ++G+A+ + + ++ VD+ + Sbjct 144 SQADYDILSRIAPTIAPPPGQPDYGISWRELTTTVGKAIGKPAQAQRVVADVDRTLERLR 203 Query 193 QRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGV-IPR 251 HP + G AL+ L++G + R+ L D+G + + DQ G I + Sbjct 204 DEHPEFEGATALV--ATLYEGYFLYGDDDPRSQLLTDLGFTLPQELDDLVGDQFGASISK 261 Query 252 DHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSV- 310 +H VLD ADV++W+T+ + E L DP + + +RR + + AFS V Sbjct 262 EHAD-VLD-ADVVVWLTDDGDAE--LREDPLYSKLRPAKERREVLVEENSDFGAAFSQVS 317 Query 311 -LSYPVVAEQLPPQI 324 LS P V E L P++ Sbjct 318 ALSVPYVLEHLVPRL 332 >gi|226363572|ref|YP_002781354.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226242061|dbj|BAH52409.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=336 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 115/331 (35%), Positives = 160/331 (49%), Gaps = 17/331 (5%) Query 7 RRGFLQVAEAAAATGLFAGCSSPKPPPGTPG---GAAVTITHLFGQTVIKEPPKRVVSAG 63 RR FL V+ + A CSS GT GA T+TH G T + + P+R+V+ G Sbjct 6 RRKFLTVSAGVGLAVVTAACSS-----GTAADTEGATRTVTHKKGTTEVPDNPQRIVTVG 60 Query 64 YTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDN-----GIQIDRI 118 Y++QD LLA P+ VTDW+GD P A WPWA LGGA P V N + I Sbjct 61 YSDQDILLAFGRTPVGVTDWYGDYPDATWPWAQDALGGAHPEVFNRGQFTGKANFAYEEI 120 Query 119 AALKPDLIVAINAGVDADTYQQLSAIAPTVAQS-GGDAFFEPWKDQARSIGQAVFAADRM 177 A L PDLI+A+ VD D YQ+LSAIAPTV S F PW+D R +G + ++ Sbjct 121 AKLGPDLILALYIDVDDDAYQRLSAIAPTVTTSPDYPDFGMPWQDAVRIVGTTLGEDEKA 180 Query 178 RSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADS 237 L+ VD A HP + GK + + V + R+ + +G V+ + Sbjct 181 NQLVAGVDDLVAQQRAAHPEFEGKTVAVAELGDAGSFYVRSPNDPRSRLMTSLGFVVPEQ 240 Query 238 IKPFAVDQRGVIPRDHIKAVLDAADVLIW-MTESPEDEKALLADPEIAASQATAQRRHIF 296 I A DQ ++D DVL+W + SP E + ADP + R +F Sbjct 241 IAQLAGDQDAFTISKEQFDIVD-VDVLVWNVGSSPGAEAKITADPVYQSLPVAKAGRAVF 299 Query 297 TSKEQA-GAIAFSSVLSYPVVAEQLPPQISQ 326 A GA+ + +VLS P E L P++++ Sbjct 300 VDDPTASGALTWGTVLSLPYAVEALVPKLAE 330 >gi|336176176|ref|YP_004581551.1| ABC transporter periplasmic protein [Frankia symbiont of Datisca glomerata] gi|334857156|gb|AEH07630.1| ABC-type transporter, periplasmic subunit [Frankia symbiont of Datisca glomerata] Length=351 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/322 (34%), Positives = 168/322 (53%), Gaps = 8/322 (2%) Query 10 FLQVAEAAAATGL-FAGCSSPKPPPGTPGGAA--VTITHLFGQTVIKEPPKRVVSAGYTE 66 F+ +A AA G G +SP+P G +A VT+ H +G T I P RVV+ G T+ Sbjct 24 FVAIALGLAACGSDKTGAASPRPSSVHSGQSAFPVTVAHKYGSTRITAQPTRVVAVGLTD 83 Query 67 QDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLI 126 + LLA+ V P+ V DWFG++P+ WPW+ G P ++ + ++IAA++PDLI Sbjct 84 SEPLLALGVKPVGVVDWFGERPYGNWPWSGKLWAGTAPEIVGERGELNFEKIAAIRPDLI 143 Query 127 VAINAGVDADTYQQLSAIAPTVAQSG-GDAFFEPWKDQARSIGQAVFAADRMRSLIEAVD 185 +A+ + + + Y LS IAPTVAQS D F PWK+ R+ GQAV R LI A+D Sbjct 144 LALYSDITQEQYDTLSKIAPTVAQSKEHDDFATPWKEMTRTAGQAVGLESRANDLIAAID 203 Query 186 QKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQ 245 +KFA V Q +P + GK ++ V + R+ F++++G + D I A + Sbjct 204 KKFADVRQANPDFAGKTTAIVDPYEPGQYAVFSPNDPRSVFMSEIGFKVPDQIGQLAGPE 263 Query 246 RGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQ---A 302 ++D D L+++T++ + E + ADP + + R +F Sbjct 264 FAAEISSERLDIVD-VDRLLFVTDASDAEARVKADPVYNRLKVAREGRALFVPYADPPVG 322 Query 303 GAIAFSSVLSYPVVAEQLPPQI 324 A+ F+SVLS P +QL P + Sbjct 323 TALTFNSVLSIPYAIDQLVPLL 344 >gi|226307291|ref|YP_002767251.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis PR4] gi|226186408|dbj|BAH34512.1| putative ABC transporter substrate-binding protein [Rhodococcus erythropolis PR4] Length=335 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 167/334 (50%), Gaps = 18/334 (5%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGG-AAVTITHLFGQTVIKEPPKRVVSAG 63 +RRGFL + + A A CSS P G +A +ITH FG T + E P+R+VS G Sbjct 9 LTRRGFL-IGTSGALLAFAAACSSSNDEDTPPSGDSAGSITHKFGATELPEDPQRIVSVG 67 Query 64 YTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNL-DNGIQIDRIAALK 122 Y +QD +LA+ + DW+GD P+ VWPWA P L GA P ++ IQ++++AA Sbjct 68 YNDQDAILALGGTLVGTFDWYGDYPYGVWPWAQPLLNGATPEIIGTAGTTIQMEKVAATT 127 Query 123 PDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFE-PWKDQARSIGQAVFAADRMRSLI 181 PDLIV +G+ Y +LSAIAPTVAQ A + PW++Q IG+A+ + LI Sbjct 128 PDLIVGTYSGLTQAQYDKLSAIAPTVAQPKEFADYGIPWQNQTTIIGEALGQQGKATELI 187 Query 182 EAVDQKFAAVAQRHPRWRGKKALL--LQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIK 239 VD+KFA V +P + GK L+ L+G G V + F ++G V Sbjct 188 AGVDKKFADVKTANPAFAGKTVLVGALKGPGQFG--VYGPEDPKVRFFTELGFV-----N 240 Query 240 PFAVDQ-RGVIPRDHIKAV-LDAADVLIWMTESPEDEK---ALLADPEIAASQATAQRRH 294 P DQ G + + L DVL+W +K L P R Sbjct 241 PPVTDQITGNFAEISTEQLSLADVDVLVWYAGGGYGDKLRAELDKTPIYQELDVVKDGRA 300 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQIL 328 I A A+ +S+VLS P EQ+PP+I+ +L Sbjct 301 IILEDAAAEAMTWSTVLSLPYALEQIPPRIAGLL 334 >gi|325048887|dbj|BAJ79313.1| putative ABC transporter substrate-binding protein [Rhodococcus erythropolis] Length=335 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 167/334 (50%), Gaps = 18/334 (5%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGG-AAVTITHLFGQTVIKEPPKRVVSAG 63 +RRGFL + + A A CSS P G +A +ITH FG T + + P+R+VS G Sbjct 9 LTRRGFL-IGTSGALLAFAAACSSSNDEDTPPSGDSAESITHKFGATELPKDPQRIVSVG 67 Query 64 YTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNL-DNGIQIDRIAALK 122 Y +QD +LA+ + DW+GD P+ VWPWA P L GA P ++ IQ++++AA Sbjct 68 YNDQDAILALGGTLVGTFDWYGDYPYGVWPWAQPLLNGATPEIIGTAGTTIQMEKVAATT 127 Query 123 PDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFE-PWKDQARSIGQAVFAADRMRSLI 181 PDLIV +G+ Y +LSAIAPTVAQ A + PW++Q IG+A+ + LI Sbjct 128 PDLIVGTYSGLTQAQYDKLSAIAPTVAQPKEFADYGIPWQNQTTIIGEALGQQGKATELI 187 Query 182 EAVDQKFAAVAQRHPRWRGKKALL--LQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIK 239 VDQKFA V +P + GK L+ L+G G V + F ++G V Sbjct 188 AGVDQKFADVKTANPAFAGKTVLVGALKGPGQFG--VYGPEDPKVRFFTELGFV-----N 240 Query 240 PFAVDQ-RGVIPRDHIKAV-LDAADVLIWMTESPEDEK---ALLADPEIAASQATAQRRH 294 P DQ G + + L DVL+W +K L P R Sbjct 241 PPVTDQITGNFAEISTEQLSLADVDVLVWYAGGGYGDKLRAELDKTPIYQELDVVKDGRA 300 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQIL 328 I A A+ +S+VLS P EQ+PP+I+ +L Sbjct 301 IILEDAAAEAMTWSTVLSLPYALEQIPPRIAGLL 334 >gi|229493225|ref|ZP_04387017.1| periplasmic binding protein [Rhodococcus erythropolis SK121] gi|229319956|gb|EEN85785.1| periplasmic binding protein [Rhodococcus erythropolis SK121] Length=335 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 118/334 (36%), Positives = 167/334 (50%), Gaps = 18/334 (5%) Query 5 CSRRGFLQVAEAAAATGLFAGCSSPKPPPGTPGG-AAVTITHLFGQTVIKEPPKRVVSAG 63 +RRGFL + + A A CSS P G +A +ITH FG T + + P+R+VS G Sbjct 9 LTRRGFL-IGTSGALLAFAAACSSSNDEDTPPSGDSAGSITHKFGATELPKDPQRIVSVG 67 Query 64 YTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNL-DNGIQIDRIAALK 122 Y +QD +LA+ + DW+GD P+ VWPWA P L GA P ++ IQ++++AA Sbjct 68 YNDQDAILALGGTLVGTFDWYGDYPYGVWPWAQPLLNGATPEIIGTAGTTIQMEKVAATT 127 Query 123 PDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFE-PWKDQARSIGQAVFAADRMRSLI 181 PDLIV +G+ Y +LSAIAPTVAQ A + PW++Q IG+A+ + LI Sbjct 128 PDLIVGTYSGLTQAQYDKLSAIAPTVAQPKEFADYGIPWQNQTTIIGEALGQQGKATELI 187 Query 182 EAVDQKFAAVAQRHPRWRGKKALL--LQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIK 239 VD+KFA V +P + GK L+ L+G G V + F ++G V Sbjct 188 AGVDKKFADVKTANPAFAGKTVLVGALKGPGQFG--VYGPEDPKVRFFTELGFV-----N 240 Query 240 PFAVDQ-RGVIPRDHIKAV-LDAADVLIWMTESPEDEK---ALLADPEIAASQATAQRRH 294 P DQ G + + L DVL+W +K L P R Sbjct 241 PPVTDQITGNFAEISTEQLSLADVDVLVWYAGGGYGDKLRAELDKTPIYQELDVVKDGRA 300 Query 295 IFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQIL 328 I A A+ +S+VLS P EQ+PP+I+ +L Sbjct 301 IILEDAAAEAMTWSTVLSLPYALEQIPPRIAGLL 334 >gi|295835956|ref|ZP_06822889.1| ABC transporter, periplasmic substrate-binding protein [Streptomyces sp. SPB74] gi|295825797|gb|EFG64488.1| ABC transporter, periplasmic substrate-binding protein [Streptomyces sp. SPB74] Length=304 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/291 (35%), Positives = 155/291 (54%), Gaps = 9/291 (3%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 +T+ H FG T +K PKRVV+ G T+QD +LA+ VP+A T+W G A+ PWA LG Sbjct 1 MTLAHKFGSTTVKSAPKRVVTVGLTDQDAVLALGTVPVATTEWLGGYKGAIGPWARKDLG 60 Query 101 GARPAVLNLDNGI--QIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGG-DAFF 157 GA+ V+ D+G Q++RIAALKPDL++A+ G+ Y+ LS AP VAQ G + + Sbjct 61 GAKAPVVLKDSGTGPQVERIAALKPDLVLAVYGGLTKAQYESLSKFAPVVAQPKGFNDYG 120 Query 158 EPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVA 217 PW+ Q IG+A+ + L+ V+ KFAA + HP + GK ++ ++G V Sbjct 121 VPWQRQTEEIGKALGKPAEAKKLVAGVEGKFAAAKKAHPEFAGKTGVV--ATPYEGTFVF 178 Query 218 TLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMT-ESPEDEKA 276 R+ L+D+G + + D+ G +LD D +W+ ++ K Sbjct 179 GSQDPRSRLLSDLGFKLPAGLDKVIGDEFGANISKERLDLLD-QDTALWIAPDTTASVKK 237 Query 277 LLADPEIAASQATAQRRHIFT--SKEQAGAIAFSSVLSYPVVAEQLPPQIS 325 L AD Q R +F + + A++ S+VLS P V ++L PQ++ Sbjct 238 LHADKIYGDLNVAKQGREVFVKETSDYGNAVSLSTVLSIPYVLDRLVPQLA 288 >gi|260426511|ref|ZP_05780490.1| twin-arginine translocation pathway signal [Citreicella sp. SE45] gi|260421003|gb|EEX14254.1| twin-arginine translocation pathway signal [Citreicella sp. SE45] Length=340 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/306 (35%), Positives = 160/306 (53%), Gaps = 14/306 (4%) Query 21 GLFAGCSSPKPPPGTPGGAA-VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIA 79 GL AG S P A+ + H +G+TV++ P +RVVS GY D +LA V P+ Sbjct 17 GLLAGAGSLLAVPAAMAQASGLRFVHAYGETVLERPARRVVSLGYNTHDTVLAFGVAPVG 76 Query 80 VTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQ 139 W+GD + VWPWA P LG A+P ++ + + I+ +A+L PDLI+ +G+ Y Sbjct 77 TRYWYGDYAYGVWPWAQPYLGEAKPVMMTGE--VSIETVASLAPDLILGTGSGISQAEYA 134 Query 140 QLSAIAPTVAQSGG-DAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRW 198 LS IAP + QS + PW+ + R++G+A+ D+ +LI V+ FAA RHP W Sbjct 135 MLSQIAPVLMQSEEFSTYGTPWQSETRTVGRALGMEDKAEALISGVETTFAAARDRHPDW 194 Query 199 RGKKALLLQGRLWQ--GNVVATLA-GWRTDFLNDMGLVIADSI-KPFAVDQRGVIPRDHI 254 G+ A+ W G A +A R FL ++G D++ + A+D Sbjct 195 AGRTAV----AAWHDGGQTGAFMAEDTRARFLRELGFRAPDALAETAAIDGFYTTLSPED 250 Query 255 KAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYP 314 + +D AD+L+W++ S E L+A A A+ R +F + AGA++F SVLS P Sbjct 251 LSPID-ADLLVWIS-SAERAADLVALAMRRTLGAYAEGREVFADELIAGAMSFGSVLSLP 308 Query 315 VVAEQL 320 E+L Sbjct 309 YALERL 314 >gi|269928501|ref|YP_003320822.1| periplasmic binding protein [Sphaerobacter thermophilus DSM 20745] gi|269787858|gb|ACZ40000.1| periplasmic binding protein [Sphaerobacter thermophilus DSM 20745] Length=397 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/294 (38%), Positives = 156/294 (54%), Gaps = 14/294 (4%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 VT+ H FG T I E P+RVV+ G++EQD +LA+ V P+AV +WFG+ P+AVWPWA +LG Sbjct 96 VTVEHKFGTTEIPEEPERVVTIGFSEQDPVLALGVKPVAVREWFGNHPYAVWPWALDELG 155 Query 101 GARPAVLNLDNG-IQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDA-FFE 158 A P VL + G + + IAAL+PD+I+A ++G+ A+ Y LS IAPTVAQSG F Sbjct 156 DAEPQVLVMPYGELDFETIAALRPDVIIATHSGITAEEYATLSQIAPTVAQSGDYPDFGM 215 Query 159 PWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQ----GRLWQGN 214 PW++Q R IG+A+ I V+ A A HP + G G+ W Sbjct 216 PWQEQTRLIGRALGRESVAEERIAEVEAAIAEAASAHPAFAGATIAWASPSDDGQFWA-- 273 Query 215 VVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDE 274 V R FL +G + + + D +LD DVLI +SPE Sbjct 274 VGPNTPPMR--FLTSLGFEVPEDLAEVIGDLDSAQISHEQVHLLD-TDVLIMQVDSPEQR 330 Query 275 KALLADPEIAASQATAQRRHIFTSKEQ---AGAIAFSSVLSYPVVAEQLPPQIS 325 + DP + + + R IF GA++FS+VLS P + E+L P+++ Sbjct 331 SVIEQDPLYQQLRVSREGRTIFFESSDDPIYGALSFSTVLSLPYLVEELVPRLA 384 >gi|297155001|gb|ADI04713.1| putative siderophore-binding lipoprotein [Streptomyces bingchenggensis BCW-1] Length=352 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/296 (36%), Positives = 157/296 (54%), Gaps = 10/296 (3%) Query 37 GGA-AVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWA 95 GGA VTI H +G T IK PKR+V+ G T+QD +LA+ VP++ T+W G A+ PWA Sbjct 44 GGAFPVTIPHKYGTTTIKNEPKRIVTVGLTDQDAVLALGRVPVSTTEWNGGYEGAIGPWA 103 Query 96 APKLGGAR-PAVL-NLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQ-SG 152 +LG A+ P VL + G Q ++IAAL+PDLI+A+ G+ + Y+ LS AP VAQ Sbjct 104 RDELGSAKTPTVLKDTGTGPQTEKIAALRPDLILAVYGGLTKEQYETLSKFAPVVAQPKE 163 Query 153 GDAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQ 212 + F PW+ Q IG A+ + + L++ V KF VA HP + G A++ + Sbjct 164 YNDFGVPWQRQTEIIGTALGQKAKAKELVKGVQTKFKTVAAEHPAFAGASAVM--ATPYD 221 Query 213 GNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESP- 271 G V R+ L D+G + + D+ G +LD D ++W+ P Sbjct 222 GIFVFGSQDPRSRVLTDLGFTLPADLDKVIGDEFGANVSKERTDLLD-TDAIVWIVADPA 280 Query 272 EDEKALLADPEIAASQATAQRRHIFT--SKEQAGAIAFSSVLSYPVVAEQLPPQIS 325 +DE L +P A + Q R ++ S + AI+F +VLS P ++L PQ++ Sbjct 281 KDEGKLDRNPLYADLKVAKQDREVYVKESSDYGNAISFVTVLSLPYTLDRLTPQLA 336 >gi|318058822|ref|ZP_07977545.1| periplasmic binding protein [Streptomyces sp. SA3_actG] gi|318075297|ref|ZP_07982629.1| periplasmic binding protein [Streptomyces sp. SA3_actF] Length=356 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/295 (34%), Positives = 154/295 (53%), Gaps = 9/295 (3%) Query 37 GGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAA 96 G VT+ H FG T +K P+R+V+ G T+QD +LA+ VP+ T+W G A+ PWA Sbjct 49 GAFPVTLAHKFGSTTVKSEPRRIVTVGLTDQDAVLALGKVPVGTTEWLGGYKGAIGPWAR 108 Query 97 PKLGGAR-PAVL-NLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGG- 153 LGGA+ P VL + G Q++RIAALKPDLI+A+ G+ Y+ LS AP VAQ Sbjct 109 KDLGGAKAPTVLKDSGTGPQVERIAALKPDLILAVYGGLTKTQYESLSKFAPVVAQPKEF 168 Query 154 DAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQG 213 + + PW+ Q IG+A+ + + L+ V+ KFAA + HP + G ++ ++G Sbjct 169 NDYGVPWQQQTEEIGKALGKSAEAKKLVAGVEDKFAAAKKAHPEFAGATGVV--ATPYEG 226 Query 214 NVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMT-ESPE 272 V R+ L+D+G + + D+ G +LD D +W+ ++ Sbjct 227 TFVFGSQDPRSRLLSDLGFELPKDLDKVIGDEFGANISKERLDLLD-QDAALWIAPDTTS 285 Query 273 DEKALLADPEIAASQATAQRRHIFT--SKEQAGAIAFSSVLSYPVVAEQLPPQIS 325 K L AD Q R +F + + A++ S+VLS P V ++L PQ++ Sbjct 286 SVKKLHADKIYGDLDVAKQGREVFVKETSDYGNAVSLSTVLSIPYVLDRLVPQLA 340 >gi|333023802|ref|ZP_08451866.1| putative ABC transporter, periplasmic substrate-binding protein [Streptomyces sp. Tu6071] gi|332743654|gb|EGJ74095.1| putative ABC transporter, periplasmic substrate-binding protein [Streptomyces sp. Tu6071] Length=356 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/295 (34%), Positives = 154/295 (53%), Gaps = 9/295 (3%) Query 37 GGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAA 96 G VT+ H FG T +K P+R+V+ G T+QD +LA+ VP+ T+W G A+ PWA Sbjct 49 GAFPVTLAHKFGSTTVKSEPRRIVTVGLTDQDAVLALGKVPVGTTEWLGGYKGAIGPWAR 108 Query 97 PKLGGAR-PAVL-NLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGG- 153 LGGA+ P VL + G Q++RIAALKPDLI+A+ G+ Y+ LS AP VAQ Sbjct 109 KDLGGAKAPTVLKDSGTGPQVERIAALKPDLILAVYGGLTKAQYESLSKFAPVVAQPKEF 168 Query 154 DAFFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQG 213 + + PW+ Q IG+A+ + + L+ V+ KFAA + HP + G ++ ++G Sbjct 169 NDYGVPWQQQTEEIGKALGKSAEAKKLVAGVEDKFAAAKKEHPEFAGATGVV--ATPYEG 226 Query 214 NVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMT-ESPE 272 V R+ L+D+G + + D+ G +LD D +W+ ++ Sbjct 227 TFVFGSQDPRSRLLSDLGFELPKDLDKVIGDEFGANISKERLDLLD-QDAALWIAPDTTS 285 Query 273 DEKALLADPEIAASQATAQRRHIFT--SKEQAGAIAFSSVLSYPVVAEQLPPQIS 325 K L AD Q R +F + + A++ S+VLS P V ++L PQ++ Sbjct 286 SVKKLHADKIYGDLDVAKQGREVFVKETSDYGNAVSLSTVLSIPYVLDRLVPQLA 340 >gi|297190504|ref|ZP_06907902.1| periplasmic binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197717817|gb|EDY61725.1| periplasmic binding protein [Streptomyces pristinaespiralis ATCC 25486] Length=345 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 90/293 (31%), Positives = 154/293 (53%), Gaps = 10/293 (3%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 VT+ H +G T I+ PK+VV+ G ++QD +LA+ V P+ DWF +QP+ WPW G Sbjct 56 VTVEHKYGSTTIESEPKKVVTLGLSDQDAVLALGVKPVGSVDWFKEQPYGKWPWTKDLWG 115 Query 101 GARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFE-P 159 P ++ + +++IAAL+PDLIVA +G+ + Y LS IA VAQ G ++ P Sbjct 116 STPPQIVGERDEYNMEKIAALQPDLIVAQYSGMKKEQYDTLSKIAKVVAQPKGHEDYQAP 175 Query 160 WKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATL 219 W+ IG+A+ LI +D +F AV HP W+G + G ++ + Sbjct 176 WQVMTEQIGKALGKEGETGKLIAGIDARFKAVRDEHPEWKGLTVTV--GEPYEPGKFSAF 233 Query 220 AGW--RTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKAL 277 + + FL++MG ++ + A+ + + + + AD +W+ +P+ EKA+ Sbjct 234 SPKDPKVIFLSEMGFTTSEKYRA-ALGKENIADLSSERLDVMEADRTVWLG-TPDTEKAM 291 Query 278 LADPEIAASQATAQRRHIF---TSKEQAGAIAFSSVLSYPVVAEQLPPQISQI 327 ADP ++ ++R +F S + A++F++VLS P +Q+ P + I Sbjct 292 KADPLYKKTKVHQEKRDLFLPYDSPDIGAALSFNTVLSIPYAIDQVVPMLEAI 344 >gi|111021218|ref|YP_704190.1| ABC Fe(3+)-siderophore binding lipoprotein transporter periplasmic binding component [Rhodococcus jostii RHA1] gi|110820748|gb|ABG96032.1| ABC Fe(3+)-siderophore binding lipoprotein transporter, periplasmic binding component [Rhodococcus jostii RHA1] Length=338 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 110/328 (34%), Positives = 155/328 (48%), Gaps = 11/328 (3%) Query 7 RRGFLQVAEAAAATGLFAGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTE 66 RR FL V+ G+ A CSS T GG TH G T + + P+R+V+ GY++ Sbjct 8 RRKFLTVSAGVGLAGVAAACSS-GTAADTEGGTRAA-THKKGTTEVPDNPRRIVTVGYSD 65 Query 67 QDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNL-----DNGIQIDRIAAL 121 QD LLA P+ VTDW+GD P A WPWA L P V N + + IA L Sbjct 66 QDTLLAFGRQPVGVTDWYGDYPDATWPWAQDALSRTHPEVFNRGQFTGEANFAYEAIAKL 125 Query 122 KPDLIVAINAGVDADTYQQLSAIAPTVAQS-GGDAFFEPWKDQARSIGQAVFAADRMRSL 180 PDLI+A+ VD D Y++LSAIAPTV S F PW+D R +G + + L Sbjct 126 DPDLILALYIDVDDDAYRRLSAIAPTVTTSPDYPDFGMPWQDAVRIVGTTLGEDGKANHL 185 Query 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 + VD A HP + GK + + V + R+ + +G V+ + I Sbjct 186 VAGVDDLVAQQRAAHPEFEGKSVAVAELGDASTFYVRSPNDPRSRLMTSLGFVVPERIAQ 245 Query 241 FAVDQRGVIPRDHIKAVLDAADVLIW-MTESPEDEKALLADPEIAASQATAQRRHIFTSK 299 A DQ R +D DVL+W + SP E + ADP + R +F Sbjct 246 LAGDQDAFTIRKEQFDTVD-VDVLVWNVGSSPGAEAQITADPVYQSLPVAKAGRAVFVDD 304 Query 300 EQ-AGAIAFSSVLSYPVVAEQLPPQISQ 326 +GA+ + +VLS P E L P++++ Sbjct 305 PTVSGALTWGTVLSLPYAVEALVPKLAE 332 >gi|259418485|ref|ZP_05742403.1| twin-arginine translocation pathway signal [Silicibacter sp. TrichCH4B] gi|259345880|gb|EEW57724.1| twin-arginine translocation pathway signal [Silicibacter sp. TrichCH4B] Length=334 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 102/290 (36%), Positives = 152/290 (53%), Gaps = 9/290 (3%) Query 41 VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLG 100 V I ++G I+ PKRVVS + D LL++ VVP A+ W+G P VWPWA LG Sbjct 27 VEIETIYGVARIEAEPKRVVSLSFIGHDFLLSLGVVPYALRKWYGPYPQGVWPWANKALG 86 Query 101 GARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDAFFE-P 159 A P V+ I I+RIAAL+PDLIVA +G+ Y LS IAPT+A + G+ + Sbjct 87 EATPIVMQ--GEIDIERIAALQPDLIVAQWSGITQREYDLLSQIAPTIAPAPGEGDYSMA 144 Query 160 WKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVA-T 218 W+D + +G A + R +I+ +DQ+FA++ QRHP W+G ++ +W G A T Sbjct 145 WQDMLKRLGNATGRSSRATQVIDRIDQRFASLRQRHPDWQGATGIM----VWAGTTGAYT 200 Query 219 LAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALL 278 R FL +G V+ D+I+ A + G P ADVLIW+ ++ L Sbjct 201 ETDLRGKFLAQLGFVMPDAIRTNAGARMGYFPISPEDLSPIDADVLIWLDSGASIDR-LN 259 Query 279 ADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQLPPQISQIL 328 P +A + R I++ + A++ SS LS ++L P + Q + Sbjct 260 RLPLRRFMRAYREGREIYSGALLSSAVSHSSPLSLDYALDELEPLLEQAM 309 >gi|108803268|ref|YP_643205.1| periplasmic binding protein [Rubrobacter xylanophilus DSM 9941] gi|108764511|gb|ABG03393.1| periplasmic binding protein [Rubrobacter xylanophilus DSM 9941] Length=344 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/294 (33%), Positives = 158/294 (54%), Gaps = 12/294 (4%) Query 42 TITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGG 101 TI H +G+ I+ P+RVVS GYT+ D LLA+ V P+ + WFGD P VWPWA +LG Sbjct 50 TIEHKYGKITIEGTPERVVSVGYTDHDPLLALGVRPVGIRRWFGDPPRGVWPWARDELGD 109 Query 102 ARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGG-DAFFEPW 160 A P +L +D+ I +++AAL+PDLIV I++G+ + Y LS APT+AQS + PW Sbjct 110 ATPELLPVDS-INYEQVAALEPDLIVGISSGMTRNDYDTLSEFAPTLAQSDRWPDYGVPW 168 Query 161 KDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLL---QGRLWQGNVVA 217 + Q IG+A+ R R L+ V+++F + HPR+ G ++ G + + V Sbjct 169 QPQTLVIGRALGREGRARRLVSRVERRFEEARREHPRFDGATVSVIGVGDGLFYLYSTVD 228 Query 218 TLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKAL 277 F +G + + A + R + + L ADVL+ SP DE+ + Sbjct 229 R----SVQFFTSLGFGLTEEAARIAPENRYYVEISEEQLGLADADVLVCFCASPADERRI 284 Query 278 LADPEIAASQATAQRRHIFTSKEQ---AGAIAFSSVLSYPVVAEQLPPQISQIL 328 ++ A + R ++ S+ GA++F++VLS+P + E P+++ ++ Sbjct 285 RSNRLFRRLDAVREGRVVYLSENDNPLKGALSFNTVLSHPYLLENFVPRLAGMV 338 >gi|256379073|ref|YP_003102733.1| periplasmic binding protein [Actinosynnema mirum DSM 43827] gi|255923376|gb|ACU38887.1| periplasmic binding protein [Actinosynnema mirum DSM 43827] Length=336 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/296 (30%), Positives = 159/296 (54%), Gaps = 7/296 (2%) Query 37 GGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAA 96 G VT+ H +G T IK PKR+V+ G ++Q+ +LA+ P+ V DWF ++P+ WPW Sbjct 41 GAFPVTVEHKYGSTEIKAEPKRIVTLGLSDQEPVLALGSKPVGVVDWFKERPYGNWPWTK 100 Query 97 PKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSAIAPTVAQSGGDA- 155 G +P ++ + + +++I ALKPDLIVA+ +G+ + Y LS IAP VAQ G Sbjct 101 ELWGDTQPEIVGERDDVSMEKIVALKPDLIVAVYSGLQQEHYDTLSKIAPVVAQPKGFVD 160 Query 156 FFEPWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRGKKALLLQG-RLWQGN 214 + PW+DQ + I +A+ +++ + L++ V ++FA HP W+GK A++ + Q + Sbjct 161 YGAPWQDQTKHIAKALGKSEKAQELVDGVAKRFADAKAAHPEWQGKTAVVADSFKPGQYS 220 Query 215 VVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDAADVLIWMTESPEDE 274 A + F+ ++G + D I A + V + L AD +IW+T + Sbjct 221 AFAPTDP-KAIFVKELGFTLKDEIGTLA-GEMNVAEFSEERMDLLEADRVIWLTSDLAAQ 278 Query 275 KALLADPEIAASQATAQRRHIFTSKEQ---AGAIAFSSVLSYPVVAEQLPPQISQI 327 + + + T+++R +F + +++F++VLS P +Q+ P + ++ Sbjct 279 ERVKGVEAYQRLKVTSEKRDLFLTYMDPPIGASMSFNTVLSVPYGIDQVVPLLEKV 334 >gi|324997367|ref|ZP_08118479.1| periplasmic binding protein [Pseudonocardia sp. P1] Length=346 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/323 (34%), Positives = 169/323 (53%), Gaps = 19/323 (5%) Query 22 LFAGCSSPKPP----PGTPGGAA--VTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDV 75 L AGC+S P P T GG V I H +G T I P RV++ G ++QD LLA+ V Sbjct 24 LVAGCTSSGEPAAPGPATDGGGTFPVRIDHAYGTTEIPAEPTRVIALGLSDQDPLLALGV 83 Query 76 VPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNLDNGIQ------IDRIAALKPDLIVAI 129 P+AV+ W+GD P A WPWA +LGGA P VLN G++ ++ IA+L+PDLI+++ Sbjct 84 TPVAVSQWYGDYPSATWPWAQDELGGATPVVLN--GGVRNEEAPPLEEIASLQPDLILSL 141 Query 130 NAGVDADTYQQLSAIAPTVAQSGGDAFFE-PWKDQARSIGQAVFAADRMRSLIEAVDQKF 188 G + Y QLS IAPTV F W++ R+ G+A+ L++ V+ +F Sbjct 142 YNGTTREQYDQLSRIAPTVVPDQQFTNFTITWQEATRATGEALGREQEAVGLVQRVEGRF 201 Query 189 AAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGV 248 A A ++P++ G+ A++ + +VV + R F +G + I A D+ G Sbjct 202 AEAAAQNPQFAGRTAVVAERFEPGASVVRSGNDVRARFFGGLGFTVPGEIGGIAPDEYGE 261 Query 249 IP-RDHIKAVLDAADVLIW-MTESPEDEKALLADPEIAASQATAQRRHIFTSKE-QAGAI 305 I D + + L + D+L+W + SPE + P AA Q R ++ +GA Sbjct 262 IDVSDELMSEL-SEDLLVWNIGASPEVRPEIENSPLHAALPVVQQGRVLWIEDPVVSGAF 320 Query 306 AFSSVLSYPVVAEQLPPQISQIL 328 ++ ++LS ++L P+I ++ Sbjct 321 SWGTILSLDYALDELVPRIRAVV 343 >gi|333918219|ref|YP_004491800.1| Fe3+-hydroxamate ABC transporter periplasmic protein [Amycolicicoccus subflavus DQS3-9A1] gi|333480440|gb|AEF39000.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Amycolicicoccus subflavus DQS3-9A1] Length=357 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/304 (32%), Positives = 146/304 (49%), Gaps = 6/304 (1%) Query 24 AGCSSPKPPPGTPGGAAVTITHLFGQTVIKEPPKRVVSAGYTEQDDLLAVDVVPIAVTDW 83 +G +S P G VTI H FG+T I + P+RV + G + D LLA+DV+P+ VT W Sbjct 52 SGQNSLPAAPTEEGAFPVTIEHQFGETTITDAPQRVAAVGLADTDALLALDVIPVLVTPW 111 Query 84 FGDQPFAVWPWAAPKLGGARPAVLNLDNGIQIDRIAALKPDLIVAINAGVDADTYQQLSA 143 G +V WA LGG P V +GI ++ IA+ PDLIVAIN +D TY+QLSA Sbjct 112 GGATEASVGEWAIDALGGTEPVVHEYSDGINVELIASTDPDLIVAINQSIDQSTYEQLSA 171 Query 144 IAPTVAQSGGDAFFE---PWKDQARSIGQAVFAADRMRSLIEAVDQKFAAVAQRHPRWRG 200 IAPT+ + F + PW+D R IG AV R ++ + F V HP G Sbjct 172 IAPTIVRPA--EFIDWGVPWQDATRMIGAAVGQPARAEEVVAETEDLFTQVRSGHPEIAG 229 Query 201 KKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKPFAVDQRGVIPRDHIKAVLDA 260 K +++ G T R F+ +G + ++ + + + A L Sbjct 230 KTGVVMLLNEAGGYYTYTEEDGRGQFMKALGFTLPPQLRELEQEGQFYVDVSAENAPLLE 289 Query 261 ADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQAGAIAFSSVLSYPVVAEQL 320 +D+L+ + E L D ++ + R++ A++ ++VLS P +QL Sbjct 290 SDILVVLANHNAAE-VLRDDAAFQSTGVGRENRYVVVDSSTGVAMSMATVLSIPYALDQL 348 Query 321 PPQI 324 P+I Sbjct 349 VPEI 352 >gi|182435199|ref|YP_001822918.1| putative iron uptake ABC transporter substrate-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463715|dbj|BAG18235.1| putative iron uptake ABC transporter substrate-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=351 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 106/328 (33%), Positives = 166/328 (51%), Gaps = 18/328 (5%) Query 13 VAEAAAATGLF--AGCSSPK------PPPGTPGGAA-VTITHLFGQTVIKEPPKRVVSAG 63 A AA+A LF + C S + P G GA VT+ H +G T +K P+R+V+ G Sbjct 11 TAVAASALLLFGASACGSGESDDAAAPAEGAQKGAYPVTLDHKYGDTTLKSEPQRIVTVG 70 Query 64 YTEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGA-RPAVLNLD-NGIQIDRIAAL 121 ++QD +LA+ VP+ T+W G+ A+ PWA LG RP VL+ D G Q+++IA+L Sbjct 71 LSDQDAVLALGKVPVGTTEWLGEFEGAIGPWAEKALGDKPRPTVLHDDGTGPQVEKIASL 130 Query 122 KPDLIVAINAGVDADTYQQLSAIAPTVAQ-SGGDAFFEPWKDQARSIGQAVFAADRMRSL 180 +PDLI+A+ +G+ D Y+ LS IAP VAQ G + W+DQ +G+A+ ++ L Sbjct 131 RPDLILALYSGLTKDQYRTLSKIAPVVAQPEDGPDWSISWQDQTEQVGKALGKSEEAAEL 190 Query 181 IEAVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAGWRTDFLNDMGLVIADSIKP 240 + ++ A HP ++G+ A++ +QG V R+ LN +G + + Sbjct 191 VAKTEKHITDAAAAHPEFQGRSAVM--ATPYQGMYVYGPQDNRSRLLNGLGFQLPTDLST 248 Query 241 FAVDQRGVIPRDHIKAVLDAADVLIWMTESP-EDEKALLADPEIAASQATAQRRHIFT-- 297 D G +LD D ++W+ P +D K L ADP + R + Sbjct 249 VVGDAFGANISKERTDLLD-TDAVVWIVTDPAKDTKKLHADPLYGKLAVAGEGREVMVKE 307 Query 298 SKEQAGAIAFSSVLSYPVVAEQLPPQIS 325 S AI+F S LS P ++L P ++ Sbjct 308 SSHFGSAISFVSPLSLPYTVDRLVPMLA 335 >gi|271965679|ref|YP_003339875.1| periplasmic binding protein [Streptosporangium roseum DSM 43021] gi|270508854|gb|ACZ87132.1| periplasmic binding protein [Streptosporangium roseum DSM 43021] Length=341 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 105/328 (33%), Positives = 166/328 (51%), Gaps = 15/328 (4%) Query 11 LQVAEAAAATGLFAGCSSPKPPPGTPG----GAA--VTITHLFGQTVIKEPPKRVVSAGY 64 L +A A+A G G SSP+ T G G A + + HL G T I P+R+V+ G Sbjct 17 LTLAVTASACG-GDGPSSPRAEATTVGAPTAGTAFPLKVEHLHGTTEITRKPERIVTIGL 75 Query 65 TEQDDLLAVDVVPIAVTDWFGDQPFAVWPWAAPKLGGARPAVLNL-DNGIQIDRIAALKP 123 ++ + LLA+ P+ V DWF PF WPWA GG P VL L ++G++++++ ALKP Sbjct 76 SDHEPLLALGHRPVGVVDWFQRTPFTDWPWAKEAWGGVEPTVLGLREDGVKMEKVVALKP 135 Query 124 DLIVAINAGVDADTYQQLSAIAPTVAQSGG-DAFFEPWKDQARSIGQAVFAADRMRSLIE 182 DLI A+ +G+ + Y QLS IAP VAQ G D + PW++ G+A+ ++LI+ Sbjct 136 DLIFAMYSGIQKEQYDQLSKIAPVVAQPKGFDPYAAPWQEMTLLAGRALGEEAEAKTLID 195 Query 183 AVDQKFAAVAQRHPRWRGKKALLLQGRLWQGNVVATLAG-WRTDFLNDMGLVIADSIKPF 241 + KF V + +P+W+G A+ G A G ++ FL ++G I + I Sbjct 196 RIGVKFTEVREANPQWKGLTAVAADS-FKAGTYSAFQKGDPKSAFLAELGFTIPERITKQ 254 Query 242 AVDQRGVIPRDHIKAVLDAADVLIWMTESPEDEKALLADPEIAASQATAQRRHIFTSKEQ 301 A + V + D L+W+T E + D + + R +F + + Sbjct 255 A-GRSNVAEFGSEGLNMLEVDRLVWLTTGKEPWARIKNDSVYKELKVAKEGRDLFLTYQD 313 Query 302 ---AGAIAFSSVLSYPVVAEQLPPQISQ 326 A++F++VLS P +Q+PP I + Sbjct 314 PPIGAALSFNTVLSIPYAIDQVPPLIKK 341 Lambda K H 0.320 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 586667724920 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40