BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0269c Length=397 Score E Sequences producing significant alignments: (Bits) Value gi|15607410|ref|NP_214783.1| hypothetical protein Rv0269c [Mycob... 800 0.0 gi|289572847|ref|ZP_06453074.1| conserved hypothetical protein [... 796 0.0 gi|15839650|ref|NP_334687.1| hypothetical protein MT0282 [Mycoba... 792 0.0 gi|240168487|ref|ZP_04747146.1| hypothetical protein MkanA1_0419... 662 0.0 gi|118466745|ref|YP_884013.1| hypothetical protein MAV_4893 [Myc... 650 0.0 gi|342859260|ref|ZP_08715914.1| hypothetical protein MCOL_10288 ... 647 0.0 gi|254777333|ref|ZP_05218849.1| hypothetical protein MaviaA2_220... 644 0.0 gi|336460178|gb|EGO39083.1| putative DNA primase [Mycobacterium ... 644 0.0 gi|41409811|ref|NP_962647.1| hypothetical protein MAP3713c [Myco... 642 0.0 gi|254820796|ref|ZP_05225797.1| hypothetical protein MintA_12758... 640 0.0 gi|183980555|ref|YP_001848846.1| hypothetical protein MMAR_0527 ... 635 3e-180 gi|118616905|ref|YP_905237.1| hypothetical protein MUL_1190 [Myc... 633 1e-179 gi|296167545|ref|ZP_06849897.1| DNA polymerase LigD [Mycobacteri... 627 9e-178 gi|108797340|ref|YP_637537.1| hypothetical protein Mmcs_0360 [My... 596 2e-168 gi|126432962|ref|YP_001068653.1| DNA primase, small subunit [Myc... 594 6e-168 gi|118470392|ref|YP_885009.1| hypothetical protein MSMEG_0597 [M... 589 3e-166 gi|333988897|ref|YP_004521511.1| hypothetical protein JDM601_025... 588 7e-166 gi|145220946|ref|YP_001131624.1| DNA primase, small subunit [Myc... 566 3e-159 gi|120401421|ref|YP_951250.1| hypothetical protein Mvan_0396 [My... 559 2e-157 gi|169631418|ref|YP_001705067.1| hypothetical protein MAB_4341 [... 558 8e-157 gi|119962702|ref|YP_947753.1| hypothetical protein AAur_2008 [Ar... 516 2e-144 gi|152968097|ref|YP_001363881.1| DNA primase small subunit [Kine... 516 3e-144 gi|220913947|ref|YP_002489256.1| DNA polymerase LigD, polymerase... 514 1e-143 gi|116671968|ref|YP_832901.1| hypothetical protein Arth_3426 [Ar... 511 7e-143 gi|323357240|ref|YP_004223636.1| eukaryotic-type DNA primase [Mi... 508 8e-142 gi|325965159|ref|YP_004243065.1| DNA polymerase LigD, polymerase... 507 1e-141 gi|337278308|ref|YP_004617779.1| eukaryotic-type DNA primase [Ra... 450 2e-124 gi|153005689|ref|YP_001380014.1| DNA primase small subunit [Anae... 446 3e-123 gi|322434050|ref|YP_004216262.1| DNA primase small subunit [Acid... 357 3e-96 gi|262199778|ref|YP_003270987.1| DNA primase small subunit [Hali... 339 5e-91 gi|284045285|ref|YP_003395625.1| DNA primase small subunit [Cone... 327 2e-87 gi|297162315|gb|ADI12027.1| hypothetical protein SBI_08909 [Stre... 305 7e-81 gi|302540329|ref|ZP_07292671.1| DNA polymerase LigD, polymerase ... 305 1e-80 gi|345011174|ref|YP_004813528.1| DNA polymerase LigD, polymerase... 303 5e-80 gi|291449041|ref|ZP_06588431.1| conserved hypothetical protein [... 296 4e-78 gi|117928585|ref|YP_873136.1| hypothetical protein Acel_1378 [Ac... 295 1e-77 gi|182434816|ref|YP_001822535.1| hypothetical protein SGR_1023 [... 295 1e-77 gi|288923415|ref|ZP_06417541.1| DNA polymerase LigD, polymerase ... 294 1e-77 gi|297203779|ref|ZP_06921176.1| DNA polymerase LigD, polymerase ... 293 3e-77 gi|345003348|ref|YP_004806202.1| DNA polymerase LigD, polymerase... 292 6e-77 gi|328886442|emb|CCA59681.1| ATP-dependent DNA ligase [Streptomy... 292 7e-77 gi|21225003|ref|NP_630782.1| hypothetical protein SCO6709 [Strep... 292 8e-77 gi|291455297|ref|ZP_06594687.1| conserved hypothetical protein [... 292 8e-77 gi|239992054|ref|ZP_04712718.1| hypothetical protein SrosN1_3245... 292 8e-77 gi|254393498|ref|ZP_05008635.1| conserved hypothetical protein [... 291 9e-77 gi|326444367|ref|ZP_08219101.1| hypothetical protein SclaA2_2501... 291 1e-76 gi|271967970|ref|YP_003342166.1| DNA primase small subunit [Stre... 291 1e-76 gi|320007308|gb|ADW02158.1| DNA polymerase LigD, polymerase doma... 291 2e-76 gi|256375706|ref|YP_003099366.1| DNA polymerase LigD, polymerase... 290 2e-76 gi|297190638|ref|ZP_06908036.1| LOW QUALITY PROTEIN: DNA polymer... 290 3e-76 >gi|15607410|ref|NP_214783.1| hypothetical protein Rv0269c [Mycobacterium tuberculosis H37Rv] gi|31791447|ref|NP_853940.1| hypothetical protein Mb0275c [Mycobacterium bovis AF2122/97] gi|121636182|ref|YP_976405.1| hypothetical protein BCG_0307c [Mycobacterium bovis BCG str. Pasteur 1173P2] 76 more sequence titles Length=397 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/397 (100%), Positives = 397/397 (100%), Gaps = 0/397 (0%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP Sbjct 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC Sbjct 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR Sbjct 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT Sbjct 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 Query 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR Sbjct 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 Query 301 LLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGM 360 LLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGM Sbjct 301 LLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGM 360 Query 361 RGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 RGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR Sbjct 361 RGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 >gi|289572847|ref|ZP_06453074.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289537278|gb|EFD41856.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length=397 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/397 (99%), Positives = 396/397 (99%), Gaps = 0/397 (0%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP Sbjct 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 MILKRFVKGI AEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC Sbjct 61 MILKRFVKGIFAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR Sbjct 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT Sbjct 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 Query 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR Sbjct 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 Query 301 LLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGM 360 LLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGM Sbjct 301 LLMLAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGM 360 Query 361 RGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 RGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR Sbjct 361 RGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 >gi|15839650|ref|NP_334687.1| hypothetical protein MT0282 [Mycobacterium tuberculosis CDC1551] gi|13879770|gb|AAK44501.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] Length=394 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/394 (100%), Positives = 394/394 (100%), Gaps = 0/394 (0%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL Sbjct 1 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 60 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL Sbjct 61 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 120 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH Sbjct 121 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 180 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 243 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS Sbjct 181 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 240 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM Sbjct 241 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 300 Query 304 LAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGMRGP 363 LAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGMRGP Sbjct 301 LAEELGPPQKAQSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVDGMRGP 360 Query 364 SSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 SSIWYRIRINLQHVPADQRPPQEELIADYSPWPR Sbjct 361 SSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 394 >gi|240168487|ref|ZP_04747146.1| hypothetical protein MkanA1_04192 [Mycobacterium kansasii ATCC 12478] Length=416 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/405 (81%), Positives = 355/405 (88%), Gaps = 12/405 (2%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M P SLDV G +V +THP RVVFP + R G+TK DLVRYYL+VA+GA+RGV+GRPMIL Sbjct 1 MTGPASLDVAGHRVTITHPDRVVFPGPDGRSGHTKLDLVRYYLSVADGALRGVSGRPMIL 60 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFVKGIS EAVFQKRAPANRPDWVDVAEL YASG SA EAVIHDAAGLAWV+NLGCVDL Sbjct 61 KRFVKGISEEAVFQKRAPANRPDWVDVAELRYASGTSAKEAVIHDAAGLAWVVNLGCVDL 120 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 NPHPVLAGDLDHPDELR+DLDPMPGV W+ +++VALVVREVLEDYGLT WPKTSG+RGFH Sbjct 121 NPHPVLAGDLDHPDELRIDLDPMPGVEWRHIIDVALVVREVLEDYGLTGWPKTSGARGFH 180 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 243 VYARIAP W F +VRLAAQTVAREVERR+PDAATSRWWKEEREGVFVDFNQNAKDRTVAS Sbjct 181 VYARIAPRWPFSKVRLAAQTVAREVERRVPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 240 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVRATPDARVSTPLHW+EVP C P VFT+ TVP R A++GDPWAG+DDAVG LDRLLM Sbjct 241 AYSVRATPDARVSTPLHWDEVPDCHPDVFTLGTVPDRFAEMGDPWAGIDDAVGHLDRLLM 300 Query 304 LAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLR 351 LAEELGPP+KA +S+KPLIE+AR KTR EAMAALD WR R+P A LL+ Sbjct 301 LAEELGPPEKAPKGAGPRAGGRRRSSKPLIEVARTKTRDEAMAALDTWRHRHPATADLLQ 360 Query 352 PADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWP 396 PADVLVDGMRGPSSIWYRIRINLQHVP DQRP QEELIADYSPWP Sbjct 361 PADVLVDGMRGPSSIWYRIRINLQHVPPDQRPAQEELIADYSPWP 405 >gi|118466745|ref|YP_884013.1| hypothetical protein MAV_4893 [Mycobacterium avium 104] gi|118168032|gb|ABK68929.1| conserved hypothetical protein [Mycobacterium avium 104] Length=426 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/414 (80%), Positives = 358/414 (87%), Gaps = 19/414 (4%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFP--AHNDRKG-----YTKFDLVRYYLAVAEGAM 53 M+ M PVSL+V GR+V +THP +VVFP + G YTK DLVRYYL+VA+GA+ Sbjct 1 MNHMTRPVSLEVAGRRVTITHPDKVVFPRAGGGETTGSAAGPYTKLDLVRYYLSVADGAL 60 Query 54 RGVAGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLA 113 RGVAGRPMILKRFVKGI+ EAVFQKRAPANRPDWVDVAEL YA G SAAEAVIHDAAGLA Sbjct 61 RGVAGRPMILKRFVKGITQEAVFQKRAPANRPDWVDVAELRYARGTSAAEAVIHDAAGLA 120 Query 114 WVINLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAW 173 WVINLGCVDLNPHPVLA DLDHPDELRVDLDPMPGV+W+R+V+VALV REVLEDYGLT W Sbjct 121 WVINLGCVDLNPHPVLADDLDHPDELRVDLDPMPGVSWRRIVDVALVAREVLEDYGLTPW 180 Query 174 PKTSGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFN 233 PKTSGSRGFH+YA IA W F QVRLAAQTVAREVERR P+AATSRWWKEEREGVFVDFN Sbjct 181 PKTSGSRGFHIYAHIARRWEFRQVRLAAQTVAREVERRAPEAATSRWWKEEREGVFVDFN 240 Query 234 QNAKDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDD 293 QNAKDRTVASAYSVRATPDARVSTPL W+EV GC P FT+ TVP+RLA+IGDPWAGMDD Sbjct 241 QNAKDRTVASAYSVRATPDARVSTPLRWDEVAGCRPEAFTIDTVPARLAEIGDPWAGMDD 300 Query 294 AVGRLDRLLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRD 341 AVG LDRLL+LAEELGPP++A +S+ PLIE+AR KTR EAMAALD+WRD Sbjct 301 AVGDLDRLLVLAEELGPPERAPKGAGTRSGGRRRSSMPLIEVARTKTRDEAMAALDVWRD 360 Query 342 RYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 R+PGAAA L+PADVLVDGMRGPSSIWYRIRINLQHVP DQRPPQEELIADYSPW Sbjct 361 RHPGAAARLQPADVLVDGMRGPSSIWYRIRINLQHVPEDQRPPQEELIADYSPW 414 >gi|342859260|ref|ZP_08715914.1| hypothetical protein MCOL_10288 [Mycobacterium colombiense CECT 3035] gi|342133501|gb|EGT86704.1| hypothetical protein MCOL_10288 [Mycobacterium colombiense CECT 3035] Length=422 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/411 (79%), Positives = 352/411 (86%), Gaps = 19/411 (4%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFP--AHNDRKG-----YTKFDLVRYYLAVAEGAMRGV 56 M PVSL+V GRQV +THP +VVFP + + G YTK DLVRYYL+VA+GA+RGV Sbjct 1 MTRPVSLEVAGRQVTITHPDKVVFPRASTGETTGTFSGPYTKLDLVRYYLSVADGALRGV 60 Query 57 AGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVI 116 AGRPMILKRFVKGI+ EAVFQKRAPA RPDWVDVAEL YA G SAAEAVIHDAAGLAW + Sbjct 61 AGRPMILKRFVKGITEEAVFQKRAPAKRPDWVDVAELRYARGTSAAEAVIHDAAGLAWAV 120 Query 117 NLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKT 176 NLGCVDLNPHPVLA DLDHPDELRVDLDPMPGV+W+R+V+VALV REVLEDYGLTAWPKT Sbjct 121 NLGCVDLNPHPVLADDLDHPDELRVDLDPMPGVSWRRIVDVALVAREVLEDYGLTAWPKT 180 Query 177 SGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNA 236 SGSRGFH+YARIAP W F QVRLAAQTVAREVERR+P+AATSRWWKEEREGVFVDFNQNA Sbjct 181 SGSRGFHIYARIAPRWEFRQVRLAAQTVAREVERRVPEAATSRWWKEEREGVFVDFNQNA 240 Query 237 KDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVG 296 KDRTVASAYSVRAT DARVSTPL W+EV GCDP FT+ TVP+R A+IGDPWAG+DDAVG Sbjct 241 KDRTVASAYSVRATADARVSTPLQWDEVAGCDPGAFTIDTVPARFAEIGDPWAGIDDAVG 300 Query 297 RLDRLLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRDRYP 344 LDRLL+LAEE+GPP++A QS PLIEIAR KT+ EA AALD+WRDRYP Sbjct 301 ELDRLLVLAEEMGPPERAPKGSGKRSDGRRQSTMPLIEIARTKTKDEAWAALDVWRDRYP 360 Query 345 GAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 AA L P D+LVDGMRGPSSIWYRIRINLQHVP DQRPPQEELIADYSPW Sbjct 361 AAARRLEPVDILVDGMRGPSSIWYRIRINLQHVPEDQRPPQEELIADYSPW 411 >gi|254777333|ref|ZP_05218849.1| hypothetical protein MaviaA2_22061 [Mycobacterium avium subsp. avium ATCC 25291] Length=426 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/414 (79%), Positives = 356/414 (86%), Gaps = 19/414 (4%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFP--AHNDRKG-----YTKFDLVRYYLAVAEGAM 53 M+ M PVSL+V GR+V +THP +VVFP + G YTK DLVRYYL+VA+GA+ Sbjct 1 MNHMTRPVSLEVAGRRVTITHPDKVVFPRAGGGETTGSAAGPYTKLDLVRYYLSVADGAL 60 Query 54 RGVAGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLA 113 RGVAGRPMILKRFVKGI+ EAVFQKRAPANRPDWVDVAEL YA G SAAEAVIHDAAGLA Sbjct 61 RGVAGRPMILKRFVKGITQEAVFQKRAPANRPDWVDVAELRYARGTSAAEAVIHDAAGLA 120 Query 114 WVINLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAW 173 WVINLGCVDLNPHPVLA DLDHPDELRVDLDPMPGV+W+R+V+VALV REVLEDYGLT W Sbjct 121 WVINLGCVDLNPHPVLADDLDHPDELRVDLDPMPGVSWRRIVDVALVAREVLEDYGLTPW 180 Query 174 PKTSGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFN 233 PKTSGSRGFH+YARIA W F QVRLAAQTVAREVERR P+AATSRWWKEEREGVFVDFN Sbjct 181 PKTSGSRGFHIYARIARRWEFRQVRLAAQTVAREVERRAPEAATSRWWKEEREGVFVDFN 240 Query 234 QNAKDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDD 293 QNAKDRTVASAYSVRATPDARVSTPL W+EV GC P FT+ TVP+RLA+IGDPWAGMDD Sbjct 241 QNAKDRTVASAYSVRATPDARVSTPLRWDEVAGCRPEAFTIDTVPARLAEIGDPWAGMDD 300 Query 294 AVGRLDRLLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRD 341 AVG LDRLL+LAEELGPP++A +S+ PLIE+AR KTR AMAALD+WRD Sbjct 301 AVGDLDRLLVLAEELGPPERAPKGAGTRSGGRRRSSMPLIEVARTKTRDGAMAALDVWRD 360 Query 342 RYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 R+P AAA L+PADVLVDGMRGPSSIWYRIRINLQ VP DQRPPQEELIADYSPW Sbjct 361 RHPEAAARLQPADVLVDGMRGPSSIWYRIRINLQRVPEDQRPPQEELIADYSPW 414 >gi|336460178|gb|EGO39083.1| putative DNA primase [Mycobacterium avium subsp. paratuberculosis S397] Length=426 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/414 (79%), Positives = 358/414 (87%), Gaps = 19/414 (4%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFP--AHNDRKG-----YTKFDLVRYYLAVAEGAM 53 M+ M PVSL+V GR+V +THP +VVFP + G +TK DLVRYYL+VA+GA+ Sbjct 1 MNHMTRPVSLEVAGRRVTITHPDKVVFPRAGGGETTGSAAGPHTKLDLVRYYLSVADGAL 60 Query 54 RGVAGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLA 113 RGVAGRPMILKRFVKGI+ EAVFQKRAPANRPDWVDVAEL YA G SAAEAVIHDAAGLA Sbjct 61 RGVAGRPMILKRFVKGITQEAVFQKRAPANRPDWVDVAELRYARGTSAAEAVIHDAAGLA 120 Query 114 WVINLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAW 173 W+INLGCVDLNPHPVLA DLDHPDELRVDLDPMPGV+W+R+V+VALV REVLEDYGLT W Sbjct 121 WLINLGCVDLNPHPVLADDLDHPDELRVDLDPMPGVSWRRIVDVALVAREVLEDYGLTPW 180 Query 174 PKTSGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFN 233 PKTSGSRGFH+YARIA W F QVRLAAQTVAREVERR P+AATSRWWKEEREGVFVDFN Sbjct 181 PKTSGSRGFHIYARIARRWEFRQVRLAAQTVAREVERRAPEAATSRWWKEEREGVFVDFN 240 Query 234 QNAKDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDD 293 QNAKDRTVASAYSVRATPDARVSTPL W+EV GC P FT+ TVP+RLA+IGDPWAGMDD Sbjct 241 QNAKDRTVASAYSVRATPDARVSTPLRWDEVAGCRPEPFTIDTVPARLAEIGDPWAGMDD 300 Query 294 AVGRLDRLLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRD 341 AVG LDRLL+LAEELGPP++A +S+ PLIE+AR KTR EAMAALD+WRD Sbjct 301 AVGDLDRLLVLAEELGPPERAPKGAGTRSGGRRRSSMPLIEVARTKTRDEAMAALDVWRD 360 Query 342 RYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 R+P AAA L+PADVLVDGMRGPSSIWYRIRINLQH+P DQRPPQEELIADYSPW Sbjct 361 RHPEAAARLQPADVLVDGMRGPSSIWYRIRINLQHIPEDQRPPQEELIADYSPW 414 >gi|41409811|ref|NP_962647.1| hypothetical protein MAP3713c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398643|gb|AAS06263.1| hypothetical protein MAP_3713c [Mycobacterium avium subsp. paratuberculosis K-10] Length=426 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/414 (79%), Positives = 357/414 (87%), Gaps = 19/414 (4%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFP--AHNDRKG-----YTKFDLVRYYLAVAEGAM 53 M+ M PVSL+V GR+V +THP +VVFP + G +TK DLVRYYL+VA+GA+ Sbjct 1 MNHMTRPVSLEVAGRRVTITHPDKVVFPRAGGGETTGSAAGPHTKLDLVRYYLSVADGAL 60 Query 54 RGVAGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLA 113 RGVAGRPMILKRFVKGI+ EAVFQKRAPANRPDWVDVAEL YA G SAAEAVIHDAAGLA Sbjct 61 RGVAGRPMILKRFVKGITQEAVFQKRAPANRPDWVDVAELRYARGTSAAEAVIHDAAGLA 120 Query 114 WVINLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAW 173 W+INLGCVDLNPHPVLA DLDHPDELRVDLDPMPGV+W+R+V+VALV REVLEDYGLT W Sbjct 121 WLINLGCVDLNPHPVLADDLDHPDELRVDLDPMPGVSWRRIVDVALVAREVLEDYGLTPW 180 Query 174 PKTSGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFN 233 PKTSGSRGF +YARIA W F QVRLAAQTVAREVERR P+AATSRWWKEEREGVFVDFN Sbjct 181 PKTSGSRGFPIYARIARRWEFRQVRLAAQTVAREVERRAPEAATSRWWKEEREGVFVDFN 240 Query 234 QNAKDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDD 293 QNAKDRTVASAYSVRATPDARVSTPL W+EV GC P FT+ TVP+RLA+IGDPWAGMDD Sbjct 241 QNAKDRTVASAYSVRATPDARVSTPLRWDEVAGCRPEAFTIDTVPARLAEIGDPWAGMDD 300 Query 294 AVGRLDRLLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRD 341 AVG LDRLL+LAEELGPP++A +S+ PLIE+AR KTR EAMAALD+WRD Sbjct 301 AVGDLDRLLVLAEELGPPERAPKGAGTRSGGRRRSSMPLIEVARTKTRDEAMAALDVWRD 360 Query 342 RYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 R+P AAA L+PADVLVDGMRGPSSIWYRIRINLQH+P DQRPPQEELIADYSPW Sbjct 361 RHPEAAARLQPADVLVDGMRGPSSIWYRIRINLQHIPEDQRPPQEELIADYSPW 414 >gi|254820796|ref|ZP_05225797.1| hypothetical protein MintA_12758 [Mycobacterium intracellulare ATCC 13950] Length=419 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/410 (79%), Positives = 348/410 (85%), Gaps = 18/410 (4%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFP---AHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 M PV L+V GR+V VTHP +VVFP H YTK DLVRYYL+VA+GA+RGVAGRP Sbjct 1 MTRPVLLEVAGREVTVTHPDKVVFPRADGHKTSGPYTKLDLVRYYLSVADGALRGVAGRP 60 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 MILKRFVKGI+ EAVFQKRAPA RPDWVDVAEL YA G SAAEAVI DAAGLAW INLGC Sbjct 61 MILKRFVKGITEEAVFQKRAPAKRPDWVDVAELRYARGTSAAEAVIRDAAGLAWAINLGC 120 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 VDLNPHPVLA DLDHPDELRVDLDPMPGV+W+R+V+VALV REVLEDYGLT WPKTSGSR Sbjct 121 VDLNPHPVLADDLDHPDELRVDLDPMPGVSWRRIVDVALVAREVLEDYGLTPWPKTSGSR 180 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 GFHVYAR+A W F QVRLAAQTVAREVERR+P+AATSRWWKEEREGVFVDFNQNAKDRT Sbjct 181 GFHVYARVARRWEFRQVRLAAQTVAREVERRVPEAATSRWWKEEREGVFVDFNQNAKDRT 240 Query 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 VASAYSVRATPDARVSTPLHW+EV GC P FT+ TVP+R A+IGDPW GMDDAVG LDR Sbjct 241 VASAYSVRATPDARVSTPLHWDEVAGCRPEAFTIDTVPARFAEIGDPWEGMDDAVGDLDR 300 Query 301 LLMLAEELGPPQKA---------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPG 345 LL+LAEE+GPP++A QS+ PLIEIAR KT+ EAMAALD WRDR+P Sbjct 301 LLVLAEEMGPPERAPKGSGKRDKGTGGRRQSSMPLIEIARTKTKDEAMAALDTWRDRHPA 360 Query 346 AAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 AA L+P DVLVDGMRGPSSIWYRIRINLQHVP DQRPPQEELIADYSPW Sbjct 361 AAERLQPVDVLVDGMRGPSSIWYRIRINLQHVPEDQRPPQEELIADYSPW 410 >gi|183980555|ref|YP_001848846.1| hypothetical protein MMAR_0527 [Mycobacterium marinum M] gi|183173881|gb|ACC38991.1| conserved protein [Mycobacterium marinum M] Length=420 Score = 635 bits (1639), Expect = 3e-180, Method: Compositional matrix adjust. Identities = 315/404 (78%), Positives = 342/404 (85%), Gaps = 12/404 (2%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M PVSL++ GRQV +THP RVVFP DR TK DLVRYYL+VA+GA+RGVAGRPM+L Sbjct 1 MTGPVSLELAGRQVKITHPDRVVFPGQGDRPSRTKLDLVRYYLSVADGALRGVAGRPMML 60 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFVKGI EAVFQKRAP NRPDWVDVAEL YASG SA EAVIHDAAGLAW INLGCVDL Sbjct 61 KRFVKGIDVEAVFQKRAPTNRPDWVDVAELRYASGTSAQEAVIHDAAGLAWAINLGCVDL 120 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 NPHPVLA DLDHPDELR+DLDPMPGV W+R+++VA VVREVLEDYGLT WPKTSGSRGFH Sbjct 121 NPHPVLARDLDHPDELRIDLDPMPGVEWRRILDVAQVVREVLEDYGLTPWPKTSGSRGFH 180 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 243 VYARIAP WSF QVRLAAQTVAREVERR+P ATSRWWKEEREGVFVDFNQNAKDRTVAS Sbjct 181 VYARIAPQWSFSQVRLAAQTVAREVERRMPGVATSRWWKEEREGVFVDFNQNAKDRTVAS 240 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVRA PDARVSTPLHW EV CDP FT+ TVP R A++GDPW+GMD AVG LDRLLM Sbjct 241 AYSVRANPDARVSTPLHWHEVADCDPQDFTLDTVPDRFAEMGDPWSGMDGAVGALDRLLM 300 Query 304 LAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLR 351 LAEELGPPQ+A Q + PLIE+AR KT+ EAMAALD WR R+P A L+ Sbjct 301 LAEELGPPQRAPAGAGKRSDGRRQPSMPLIEVARTKTKDEAMAALDTWRARHPAVADRLQ 360 Query 352 PADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 PADVLVDGMRGPSSIWYRIRINLQH+P + RPPQEELIA+Y+PW Sbjct 361 PADVLVDGMRGPSSIWYRIRINLQHIPPEARPPQEELIAEYNPW 404 >gi|118616905|ref|YP_905237.1| hypothetical protein MUL_1190 [Mycobacterium ulcerans Agy99] gi|118569015|gb|ABL03766.1| conserved protein [Mycobacterium ulcerans Agy99] Length=423 Score = 633 bits (1633), Expect = 1e-179, Method: Compositional matrix adjust. Identities = 315/407 (78%), Positives = 342/407 (85%), Gaps = 12/407 (2%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 M M PVSL++ GRQV +THP RVVFP DR TK DLVRYYL+VA+GA+RGVAGRP Sbjct 1 MIPMTGPVSLELAGRQVKITHPDRVVFPGQGDRPSRTKLDLVRYYLSVADGALRGVAGRP 60 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 M+LKRFVKGI EAVFQKRAP NRPDWVDVAEL YASG SA EAVIHDAAGLAW INLGC Sbjct 61 MMLKRFVKGIDVEAVFQKRAPTNRPDWVDVAELRYASGTSAQEAVIHDAAGLAWAINLGC 120 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 VDLNPHPVLA DLDHPDELR+DLDPMPGV W+R+++VA VVREVLEDYGLT WPKTSGSR Sbjct 121 VDLNPHPVLARDLDHPDELRIDLDPMPGVEWRRILDVAQVVREVLEDYGLTPWPKTSGSR 180 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 GFHVYARIAP WSF QVRLAAQTVAREVERR+P ATSRWWKEEREGVFVDFNQNAKDRT Sbjct 181 GFHVYARIAPQWSFSQVRLAAQTVAREVERRMPGVATSRWWKEEREGVFVDFNQNAKDRT 240 Query 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 VASAYSVRA PDARVSTPLHW EV CDP FT+ VP R A++GDPW+GMD AVG LDR Sbjct 241 VASAYSVRANPDARVSTPLHWHEVADCDPQDFTLDAVPDRFAELGDPWSGMDGAVGALDR 300 Query 301 LLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAA 348 LLMLAEELGPPQ+A Q + PLIE+AR KT+ EAMAALD WR R+P A Sbjct 301 LLMLAEELGPPQRAPAGAGKRRDGRRQPSMPLIEVARTKTKDEAMAALDTWRARHPAVAD 360 Query 349 LLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 L+PADVLVDGMRGPSSIWYRIRINLQH+P + RPPQEELIA+Y+PW Sbjct 361 RLQPADVLVDGMRGPSSIWYRIRINLQHIPPEARPPQEELIAEYNPW 407 >gi|296167545|ref|ZP_06849897.1| DNA polymerase LigD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897167|gb|EFG76776.1| DNA polymerase LigD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=416 Score = 627 bits (1618), Expect = 9e-178, Method: Compositional matrix adjust. Identities = 311/401 (78%), Positives = 343/401 (86%), Gaps = 11/401 (2%) Query 6 APVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKR 65 PVSL+V G V VTHP RVVF A+ + +TK DL+RYYL+VAEGA+RGVAGRPMILKR Sbjct 5 GPVSLEVDGHDVTVTHPDRVVFEANGGARPHTKLDLIRYYLSVAEGALRGVAGRPMILKR 64 Query 66 FVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNP 125 FVKGI+ EAVFQKRAP NRPD+VDVAELHYA G SAAEAVIHDAAGLAW +NLGCVD NP Sbjct 65 FVKGITQEAVFQKRAPKNRPDYVDVAELHYARGTSAAEAVIHDAAGLAWAVNLGCVDFNP 124 Query 126 HPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVY 185 HPVLA DLDHPDELRVDLDPMPGV+W R++EVALV REVLEDYGL AWPKTSGSRGFH+Y Sbjct 125 HPVLARDLDHPDELRVDLDPMPGVSWGRIIEVALVAREVLEDYGLVAWPKTSGSRGFHIY 184 Query 186 ARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAY 245 ARIAP W F QVRLAAQTVAREVERR+PDAATSRWWKEEREGVFVDFNQNAKDRTVASAY Sbjct 185 ARIAPRWEFRQVRLAAQTVAREVERRVPDAATSRWWKEEREGVFVDFNQNAKDRTVASAY 244 Query 246 SVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA 305 SVRATPDARVSTPL W+EV P FT+ TVP R A++GDPW GMD+AVG LDRLL+LA Sbjct 245 SVRATPDARVSTPLRWDEVTERRPEEFTIDTVPDRFAELGDPWEGMDEAVGDLDRLLVLA 304 Query 306 EELGPPQKA-----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPAD 354 EE+GPP++A +S PLIE+AR KT+ EA+AALD WR R+P A+ LRPAD Sbjct 305 EEMGPPERAPKGAGGAGGRRRSVMPLIEVARTKTKDEALAALDTWRARHPAASGRLRPAD 364 Query 355 VLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 VLVDGMRGPSSIWYRIR+NLQHVP D+RPPQEELIADYSPW Sbjct 365 VLVDGMRGPSSIWYRIRVNLQHVPVDERPPQEELIADYSPW 405 >gi|108797340|ref|YP_637537.1| hypothetical protein Mmcs_0360 [Mycobacterium sp. MCS] gi|119866425|ref|YP_936377.1| hypothetical protein Mkms_0370 [Mycobacterium sp. KMS] gi|108767759|gb|ABG06481.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692514|gb|ABL89587.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=434 Score = 596 bits (1537), Expect = 2e-168, Method: Compositional matrix adjust. Identities = 300/414 (73%), Positives = 334/414 (81%), Gaps = 19/414 (4%) Query 1 MSRMAAP----VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGV 56 M+ MA P ++LD+ GR + VTHP +VVF H R +K DL+ YYLAVA+GA+RGV Sbjct 1 MADMAGPRAQGLTLDIAGRTLTVTHPDKVVFETHQGRPPISKLDLIEYYLAVADGALRGV 60 Query 57 AGRPMILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVI 116 A RPMILKRFVKGI+ EAVFQKRAPA RPD+VDVAEL YASG SA EAVIHDAAGLAW + Sbjct 61 ADRPMILKRFVKGITEEAVFQKRAPAKRPDYVDVAELKYASGTSAKEAVIHDAAGLAWAV 120 Query 117 NLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKT 176 N+GCVDLNPHP +GDL HPDELRVDLDPMPGV WQ++V VA+V REVLED+GLTAWPKT Sbjct 121 NIGCVDLNPHPTRSGDLAHPDELRVDLDPMPGVDWQQIVAVAMVAREVLEDHGLTAWPKT 180 Query 177 SGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNA 236 SGSRGFH+YARI P W F VRLAAQT+AREVERR PD ATSRWWKEEREGVFVDFNQNA Sbjct 181 SGSRGFHIYARIEPRWPFKFVRLAAQTIAREVERRAPDLATSRWWKEEREGVFVDFNQNA 240 Query 237 KDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVG 296 DRTVASAYSVRATPDARVSTPL W+EVPGC P FT+ATVP+R A+IGDPW MDD G Sbjct 241 FDRTVASAYSVRATPDARVSTPLRWDEVPGCRPEAFTVATVPARYAEIGDPWESMDDHPG 300 Query 297 RLDRLLMLAEELGPPQKA---------------QSAKPLIEIARAKTRAEAMAALDIWRD 341 RLD LL LA+ LGP +KA QS PLIEIAR KT+ EA+AALD WR Sbjct 301 RLDALLDLADRLGPAEKAPRGAKRQGAGATGRRQSVMPLIEIARTKTKDEALAALDTWRQ 360 Query 342 RYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 R+P AA L+P DVLVDGMRGPSSIWYRIRINL+HVP +QRPPQE L+ADYSPW Sbjct 361 RHPAAAERLQPPDVLVDGMRGPSSIWYRIRINLRHVPEEQRPPQEPLLADYSPW 414 >gi|126432962|ref|YP_001068653.1| DNA primase, small subunit [Mycobacterium sp. JLS] gi|126232762|gb|ABN96162.1| DNA primase, small subunit [Mycobacterium sp. JLS] Length=434 Score = 594 bits (1532), Expect = 6e-168, Method: Compositional matrix adjust. Identities = 296/403 (74%), Positives = 329/403 (82%), Gaps = 15/403 (3%) Query 8 VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFV 67 ++LD+ GR + VTHP +VVF H R +K DL+ YYLAVA+GA+RGVA RPMILKRFV Sbjct 12 LTLDIAGRTLTVTHPDKVVFETHQGRPPISKLDLIEYYLAVADGALRGVADRPMILKRFV 71 Query 68 KGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHP 127 KGI+ EAVFQKRAPA RPD+VDVAEL YASG SA EAVIHDAAGLAW +N+GCVDLNPHP Sbjct 72 KGITEEAVFQKRAPAKRPDYVDVAELKYASGTSAKEAVIHDAAGLAWAVNIGCVDLNPHP 131 Query 128 VLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYAR 187 +GDL HPDELRVDLDPMPGV WQ++V VA+V REVLED+GLTAWPKTSGSRGFH+YAR Sbjct 132 TRSGDLAHPDELRVDLDPMPGVDWQQIVAVAMVAREVLEDHGLTAWPKTSGSRGFHIYAR 191 Query 188 IAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAYSV 247 I P W F VRLAAQT+AREVERR PD ATSRWWKEEREGVFVDFNQNA DRTVASAYSV Sbjct 192 IEPRWPFKFVRLAAQTIAREVERRAPDLATSRWWKEEREGVFVDFNQNAFDRTVASAYSV 251 Query 248 RATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAEE 307 RATPDARVSTPL W+EVPGC P FT+ATVP+R A+IGDPW MDD GRLD LL LA+ Sbjct 252 RATPDARVSTPLRWDEVPGCRPEAFTVATVPARYAEIGDPWESMDDHPGRLDALLDLADR 311 Query 308 LGPPQKA---------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRP 352 LGP +KA QS PLIEIAR KT+ EA+AALD WR R+P AA L+P Sbjct 312 LGPAEKAPRGAKRQGAGATGRRQSVMPLIEIARTKTKDEALAALDTWRQRHPAAAERLQP 371 Query 353 ADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 DVLVDGMRGPSSIWYRIRINL+HVP +QRPPQE L+ADYSPW Sbjct 372 PDVLVDGMRGPSSIWYRIRINLRHVPEEQRPPQEPLLADYSPW 414 >gi|118470392|ref|YP_885009.1| hypothetical protein MSMEG_0597 [Mycobacterium smegmatis str. MC2 155] gi|118171679|gb|ABK72575.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=426 Score = 589 bits (1518), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 289/402 (72%), Positives = 328/402 (82%), Gaps = 10/402 (2%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MA ++L++ G V VT+P +V+FP ++ R TK DLV YY AVA+GA+RGV GRPMIL Sbjct 15 MAGALTLELDGLTVSVTNPDKVIFPEYDGRAAVTKLDLVNYYRAVADGALRGVFGRPMIL 74 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFVKGI+ EA+FQKRAP RPD+++VAEL Y SG SA EAV+ + AGLAW +NLGCVDL Sbjct 75 KRFVKGIATEAIFQKRAPEKRPDFIEVAELKYRSGTSAKEAVLRNTAGLAWAVNLGCVDL 134 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 NPHPV A DLDHPDELRVDLDPMPGV WQ++++VA+V REVL D+GLTAWPKTSGSRGFH Sbjct 135 NPHPVRADDLDHPDELRVDLDPMPGVEWQQILDVAMVAREVLSDHGLTAWPKTSGSRGFH 194 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 243 +YARI+ W + +VRLAAQTVAREVERR PD AT+ WWKEEREGVFVDFNQNAKDRTVAS Sbjct 195 IYARISRDWPYAKVRLAAQTVAREVERRAPDLATAHWWKEEREGVFVDFNQNAKDRTVAS 254 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVRATPDARVSTPL W+EVP C P FT+ATVP R A+IGDPW GMD AVG LD LL Sbjct 255 AYSVRATPDARVSTPLRWDEVPTCRPEEFTIATVPDRFAEIGDPWEGMDTAVGGLDGLLA 314 Query 304 LAEELGPPQKA----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPA 353 LAEELGP +KA S PLIEIAR KT+ EAMAALDIWR+RYP + L P Sbjct 315 LAEELGPAEKAPKGASRDGRRASTMPLIEIARTKTKDEAMAALDIWRERYPEVSKKLEPV 374 Query 354 DVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 D+LVDGMRGPSSIWYRIRINLQHVP +RPPQEELIADYSPW Sbjct 375 DILVDGMRGPSSIWYRIRINLQHVPEGERPPQEELIADYSPW 416 >gi|333988897|ref|YP_004521511.1| hypothetical protein JDM601_0257 [Mycobacterium sp. JDM601] gi|333484865|gb|AEF34257.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=410 Score = 588 bits (1515), Expect = 7e-166, Method: Compositional matrix adjust. Identities = 302/410 (74%), Positives = 331/410 (81%), Gaps = 13/410 (3%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 M+ MA +SLDV G +V VTHP +VVFP + TK +L+RYYLAVA+GA+ GVAGRP Sbjct 1 MAVMAGGLSLDVAGHRVAVTHPDKVVFPGRDGTASRTKLELIRYYLAVADGALAGVAGRP 60 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 MILKRFV GI AEAVFQKRAPANRPDWV VAEL YASGRSA E VI+DAAGLAWVINLGC Sbjct 61 MILKRFVDGIDAEAVFQKRAPANRPDWVSVAELRYASGRSAQEVVINDAAGLAWVINLGC 120 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 VDLNPHPV AGDL HPDELRVDLDPMPGV W ++VEVAL REVL D+GL AWPKTSGSR Sbjct 121 VDLNPHPVRAGDLAHPDELRVDLDPMPGVGWPQIVEVALRAREVLADHGLIAWPKTSGSR 180 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREG-VFVDFNQNAKDR 239 G H+YAR+AP W F QVRLAAQ VARE+ERR P +ATSRWWKEER VFVDFNQNAKDR Sbjct 181 GMHIYARLAPRWEFRQVRLAAQAVAREIERRAPQSATSRWWKEERGARVFVDFNQNAKDR 240 Query 240 TVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLD 299 TVASAYSVRAT DARVSTPL W+EVP DPA FTM TVP R+A IGDPWAGM++ VG L+ Sbjct 241 TVASAYSVRATFDARVSTPLSWDEVPDADPAAFTMDTVPDRVARIGDPWAGMNETVGDLE 300 Query 300 RLLMLAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAA 347 LL LAE GP +KA S PLIEIAR KT+ EA+AALD+WR+R+ AA Sbjct 301 SLLELAEAQGPAEKAPKGARKNVDGRRTSPLPLIEIARTKTKDEAIAALDVWRERHAAAA 360 Query 348 ALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 L PADVLVDGMRGPSSIWYR+RINLQHVPA QRPPQEELIADYSPW R Sbjct 361 DRLTPADVLVDGMRGPSSIWYRVRINLQHVPAGQRPPQEELIADYSPWER 410 >gi|145220946|ref|YP_001131624.1| DNA primase, small subunit [Mycobacterium gilvum PYR-GCK] gi|315442084|ref|YP_004074963.1| DNA primase [Mycobacterium sp. Spyr1] gi|145213432|gb|ABP42836.1| DNA primase, small subunit [Mycobacterium gilvum PYR-GCK] gi|315260387|gb|ADT97128.1| predicted DNA primase [Mycobacterium sp. Spyr1] Length=412 Score = 566 bits (1458), Expect = 3e-159, Method: Compositional matrix adjust. Identities = 284/404 (71%), Positives = 321/404 (80%), Gaps = 16/404 (3%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MAA S ++ GR V VTH +VVF G TK DL+ YY +VA+GA+RGV RPMIL Sbjct 1 MAARESYEIGGRTVPVTHLDKVVF----GELGLTKLDLIDYYASVADGALRGVRDRPMIL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFVKGI EAVFQKRAP NRPD+VDVAEL YASG SAAEAV+ D AGL W +NLGCVDL Sbjct 57 KRFVKGIDEEAVFQKRAPKNRPDFVDVAELKYASGTSAAEAVLRDPAGLVWAVNLGCVDL 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 NPHPV A DLDHPDELRVDLDPMPGV W+++++VA V REVLED+GL AWPKTSGSRGFH Sbjct 117 NPHPVRAEDLDHPDELRVDLDPMPGVGWRQILDVAFVAREVLEDHGLVAWPKTSGSRGFH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 243 +YARI P W F QVRLAA+ VAREVERR P++AT+RWWKEER GVFVDFNQNAKDRTVAS Sbjct 177 IYARIHPRWPFKQVRLAAEAVAREVERRAPESATARWWKEERHGVFVDFNQNAKDRTVAS 236 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVRATPDARVSTPL W+E+ GC P FT+ TVP+R A++GDPW GMDDA G L+ LL Sbjct 237 AYSVRATPDARVSTPLFWDELAGCKPEEFTVHTVPARFAELGDPWEGMDDAAGGLEALLE 296 Query 304 LAEELGPPQKA------------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLR 351 L++ LGP +KA S PLIEIAR KT+ EA++AL WRD+YP + L Sbjct 297 LSDRLGPAEKAPRGAKKSVDGRRASVMPLIEIARTKTKDEALSALAQWRDKYPAVSEKLE 356 Query 352 PADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 PADVLVDGMRGPSSIWYRIRINLQHV DQRPPQEEL+ADYSPW Sbjct 357 PADVLVDGMRGPSSIWYRIRINLQHVAEDQRPPQEELLADYSPW 400 >gi|120401421|ref|YP_951250.1| hypothetical protein Mvan_0396 [Mycobacterium vanbaalenii PYR-1] gi|119954239|gb|ABM11244.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=412 Score = 559 bits (1441), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 284/404 (71%), Positives = 319/404 (79%), Gaps = 16/404 (3%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MAA S ++ G QV +T+P +VVF G TK DL+RYY AVA+GA+RGV RPMIL Sbjct 1 MAARESFEIAGEQVPITNPDKVVF----GDLGLTKLDLMRYYAAVADGALRGVRDRPMIL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFVKGI EAVFQKRAP RPD+VDVAEL YASG SA EAV+HDAAGL W +NLGCVDL Sbjct 57 KRFVKGIEQEAVFQKRAPEKRPDFVDVAELKYASGTSAKEAVLHDAAGLIWAVNLGCVDL 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 NPHPV A DL+HPDELRVDLDPMPGV W+++++VA V REVLED+GL AWPKTSGSRGFH Sbjct 117 NPHPVRADDLEHPDELRVDLDPMPGVGWRQILDVAFVAREVLEDHGLVAWPKTSGSRGFH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVAS 243 +YARI W F VRLAA+TVAREVERR P++AT+RWWKEER+GVFVDFNQNAKDRTVAS Sbjct 177 IYARIHRRWPFKLVRLAAETVAREVERRAPESATARWWKEERQGVFVDFNQNAKDRTVAS 236 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVRATPDARVSTPL W+EV C P FT+ TVP R ++ GDPW GMDDA G L+ LL Sbjct 237 AYSVRATPDARVSTPLFWDEVADCRPEEFTVRTVPRRFSERGDPWEGMDDAAGGLEALLD 296 Query 304 LAEELGPPQKAQ------------SAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLR 351 LA+ LGP +KA S PLIEIAR KT+ EAMAAL WRD+YP AA L Sbjct 297 LADRLGPAEKAPRGARKSADGRRVSVMPLIEIARTKTKDEAMAALQQWRDKYPAAAEKLE 356 Query 352 PADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 PADVLVDGMRGPSSIWYRIRINLQHV D RP QEEL+ADY+PW Sbjct 357 PADVLVDGMRGPSSIWYRIRINLQHVAEDARPAQEELLADYNPW 400 >gi|169631418|ref|YP_001705067.1| hypothetical protein MAB_4341 [Mycobacterium abscessus ATCC 19977] gi|169243385|emb|CAM64413.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=409 Score = 558 bits (1437), Expect = 8e-157, Method: Compositional matrix adjust. Identities = 279/400 (70%), Positives = 315/400 (79%), Gaps = 14/400 (3%) Query 6 APVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKR 65 A + L V GR V +THP +V+FP G TK +LV YYL VAEGA+RGV RPMILKR Sbjct 13 ADLVLQVAGRDVTITHPDKVIFPD----SGITKGNLVHYYLDVAEGALRGVRDRPMILKR 68 Query 66 FVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNP 125 FVKGI+ EAVFQKR P RPDW+ AELHYA G SA EAV+ DAA LAWV+NLGCVDLNP Sbjct 69 FVKGIAQEAVFQKRVPEKRPDWIASAELHYARGTSAREAVVTDAASLAWVVNLGCVDLNP 128 Query 126 HPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVY 185 HPV A DLDHPDELR+DLDP+PGV W ++++VA VVR VLED+GLTAWPKTSGSRGFH+Y Sbjct 129 HPVRADDLDHPDELRIDLDPVPGVPWSQILDVAFVVRGVLEDHGLTAWPKTSGSRGFHIY 188 Query 186 ARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAY 245 A +A W++ ++RLAA+TVAREVERR P+ ATSRWWKEER GVFVDFNQNAKDRTVASAY Sbjct 189 APVARRWTYRELRLAAETVAREVERRAPELATSRWWKEERHGVFVDFNQNAKDRTVASAY 248 Query 246 SVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA 305 SVRATPDARVSTPL W+EV GC P FT+ TV R ADI DPW GMDDA G LD+LL LA Sbjct 249 SVRATPDARVSTPLRWDEVAGCRPESFTLHTVRERFADIDDPWRGMDDATGTLDQLLELA 308 Query 306 EELGPPQKA----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADV 355 ELGP +KA + PLIEIAR KT+ EA AALD+WRD YP A LL P D+ Sbjct 309 AELGPAEKAPKGASRDGRRRPTMPLIEIARTKTKPEAQAALDVWRDTYPRVAGLLEPQDI 368 Query 356 LVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 L+DGMRGPSS+WYR+RINL HVP QRP QEELIADYSPW Sbjct 369 LIDGMRGPSSVWYRVRINLVHVPEGQRPAQEELIADYSPW 408 >gi|119962702|ref|YP_947753.1| hypothetical protein AAur_2008 [Arthrobacter aurescens TC1] gi|119949561|gb|ABM08472.1| conserved hypothetical protein [Arthrobacter aurescens TC1] Length=414 Score = 516 bits (1330), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 258/397 (65%), Positives = 302/397 (77%), Gaps = 15/397 (3%) Query 10 LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKG 69 LD+ G +V +++P +VVFP G TK DLV YYLAVA+GA+RG GRPM+LKRF KG Sbjct 11 LDIAGNEVRISNPDKVVFP----EPGLTKLDLVNYYLAVADGALRGAGGRPMVLKRFPKG 66 Query 70 ISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVL 129 I AE FQKR P N PD++D A LHY+SG SA E VI DAAGLAWV+NLGC+DLNPHPV Sbjct 67 IDAEPFFQKRVPENHPDFIDTATLHYSSGTSAEETVIRDAAGLAWVVNLGCLDLNPHPVR 126 Query 130 AGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIA 189 A DLDHPDELRVDLDPMPGV W R+V+ A V +EVL+D GL WPKTSGSRG H+ RI Sbjct 127 AEDLDHPDELRVDLDPMPGVDWSRIVDTAYVAQEVLDDVGLVGWPKTSGSRGLHILVRIT 186 Query 190 PCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYSVR 248 P WS+ VRLAA+T+AREVE R P AT++WWKEER E VFVDFNQNAKDRTVASAYSVR Sbjct 187 PQWSYRDVRLAAETLAREVENRAPGLATAKWWKEERGESVFVDFNQNAKDRTVASAYSVR 246 Query 249 ATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAEEL 308 + PDARVSTPL W+EV P FT+ TVP+R +D+GDP AG+D+A G LD LL LA EL Sbjct 247 SRPDARVSTPLTWDEVRSARPEQFTVRTVPARFSDLGDPHAGIDEAPGSLDGLLALAAEL 306 Query 309 GPPQKAQ----------SAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVD 358 GP +KA S PLIE+AR KT+ EA AAL+ W+ R+ G + L PADVLVD Sbjct 307 GPAEKAPRAGDGSGRRVSMMPLIEVARTKTKPEAGAALEEWKSRHAGVVSFLHPADVLVD 366 Query 359 GMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 GMRG SS+WYR+R+NLQH+P D+RP QEELIADY PW Sbjct 367 GMRGSSSLWYRVRVNLQHIPEDRRPAQEELIADYDPW 403 >gi|152968097|ref|YP_001363881.1| DNA primase small subunit [Kineococcus radiotolerans SRS30216] gi|151362614|gb|ABS05617.1| DNA primase small subunit [Kineococcus radiotolerans SRS30216] Length=408 Score = 516 bits (1329), Expect = 3e-144, Method: Compositional matrix adjust. Identities = 265/404 (66%), Positives = 311/404 (77%), Gaps = 14/404 (3%) Query 4 MAAPVS-LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMI 62 MA+P + L++ GR+V+VT+P +VVF R G TK DLVRYYL+VA+G +RGV GRPM+ Sbjct 1 MASPQTVLELAGREVVVTNPDKVVFA----RSGTTKLDLVRYYLSVADGVLRGVRGRPMV 56 Query 63 LKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVD 122 LKRFVKGI AEAVFQKRAP RPDW++VAEL YA G SAAE V+ D A LAWV+NL CVD Sbjct 57 LKRFVKGIEAEAVFQKRAPEKRPDWIEVAELRYARGTSAAETVVRDEASLAWVLNLNCVD 116 Query 123 LNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGF 182 LNPHPVLA DL+HP ELR+DLDP PGV W ++V+VA V REVL D+GLTAWPKTSGSRGF Sbjct 117 LNPHPVLAEDLEHPVELRIDLDPQPGVDWHQIVDVAFVAREVLADHGLTAWPKTSGSRGF 176 Query 183 HVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTV 241 HVYA I P WS+P+VRLAA+TVAREVE R ATSRWWKEER EGVFVDFNQNAKDRTV Sbjct 177 HVYAPIDPVWSYPEVRLAAETVAREVEDRARGLATSRWWKEERGEGVFVDFNQNAKDRTV 236 Query 242 ASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADI-GDPWAGMDDAVGRLDR 300 ASAYSVRATPDARVSTPL W+EV P T+ TVP R A++ GDPWAGMD G L+ Sbjct 237 ASAYSVRATPDARVSTPLTWDEVRDVRPEDHTLLTVPRRWAELGGDPWAGMDGTGGSLEA 296 Query 301 LLMLAEELGPPQKAQSAK-------PLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPA 353 LL LAE +GP +KA PLIE+ARA+T+ E +A L+ W+ ++P LL + Sbjct 297 LLALAERMGPAEKAPKGTGSRTVTMPLIEVARARTKPEVLAGLESWKAKHPDVVPLLTES 356 Query 354 DVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPWPR 397 DVLVDGMRG SS+WYR+R+NL+HVP QRPPQ L D+ PW R Sbjct 357 DVLVDGMRGSSSLWYRVRVNLRHVPEAQRPPQAALEVDFDPWAR 400 >gi|220913947|ref|YP_002489256.1| DNA polymerase LigD, polymerase domain-containing protein [Arthrobacter chlorophenolicus A6] gi|219860825|gb|ACL41167.1| DNA polymerase LigD, polymerase domain protein [Arthrobacter chlorophenolicus A6] Length=414 Score = 514 bits (1324), Expect = 1e-143, Method: Compositional matrix adjust. Identities = 262/397 (66%), Positives = 301/397 (76%), Gaps = 15/397 (3%) Query 10 LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKG 69 LD+ G +V ++ P +VVFP G TK DLVRYYLAVAEGA+RG GRPM+LKRF KG Sbjct 11 LDIEGVEVRISSPDKVVFP----EPGLTKLDLVRYYLAVAEGALRGAGGRPMVLKRFPKG 66 Query 70 ISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVL 129 I AE FQKR P N P ++D LHYASG SA EAVI DAAGLAWV+NLGC+DLNPHPV Sbjct 67 IDAEPFFQKRVPENHPPFIDTTTLHYASGTSAQEAVIRDAAGLAWVVNLGCLDLNPHPVR 126 Query 130 AGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIA 189 A DL+HPDELRVDLDPMPGV W ++V+VA V +EVL+D L WPKTSGSRG H+ RIA Sbjct 127 AEDLEHPDELRVDLDPMPGVDWSQIVDVAYVAQEVLDDVALVGWPKTSGSRGLHILVRIA 186 Query 190 PCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYSVR 248 P WS+ VRLAA+T+AREVE R P AT+RWWKEER E VFVDFNQNAKDRTVASAYSVR Sbjct 187 PEWSYKDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVASAYSVR 246 Query 249 ATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAEEL 308 A PDARVSTPL W+EV P FT+ TV R ADIGDP AG+DDAVG LD LL LA++L Sbjct 247 ALPDARVSTPLTWDEVRTVRPERFTVPTVLERFADIGDPHAGIDDAVGSLDGLLALAKDL 306 Query 309 GPPQKA----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVD 358 GP +KA QSA PLIE+AR KT+ EA+ AL+ W+ + G L+PADV+VD Sbjct 307 GPAEKAPRAGNGSGRRQSAMPLIEVARTKTKPEALKALEEWKSGHAGVVKALQPADVMVD 366 Query 359 GMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 GMRG SS+WYR+R+NLQHVP RP QEELIADY PW Sbjct 367 GMRGSSSLWYRVRVNLQHVPEADRPGQEELIADYDPW 403 >gi|116671968|ref|YP_832901.1| hypothetical protein Arth_3426 [Arthrobacter sp. FB24] gi|116612077|gb|ABK04801.1| conserved hypothetical protein [Arthrobacter sp. FB24] Length=414 Score = 511 bits (1317), Expect = 7e-143, Method: Compositional matrix adjust. Identities = 259/397 (66%), Positives = 300/397 (76%), Gaps = 15/397 (3%) Query 10 LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKG 69 LD+ G +V ++ P +VVFP G TK DLVRYYLAVA+GA+RG GRPM+LKRF KG Sbjct 11 LDISGTEVRISSPDKVVFP----EPGLTKLDLVRYYLAVADGALRGAGGRPMVLKRFPKG 66 Query 70 ISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVL 129 I AE FQKR P N PD+++ A LHYASG SA EAVI DAAGLAWV+NLGC+DLNPHPV Sbjct 67 IDAEPFFQKRVPENHPDFIETATLHYASGTSAEEAVIRDAAGLAWVVNLGCLDLNPHPVR 126 Query 130 AGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIA 189 A DL+HPDELRVDLDPMPGV W ++V+VA V REVL+D GL WPKTSGSRG H+ RIA Sbjct 127 AEDLEHPDELRVDLDPMPGVDWSQIVDVAYVAREVLDDTGLVGWPKTSGSRGLHILVRIA 186 Query 190 PCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYSVR 248 P WS+ VRLAA+T+AREVE R P AT+RWWKEER E VFVDFNQNAKDRTVASAYS+R Sbjct 187 PHWSYRDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVASAYSIR 246 Query 249 ATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAEEL 308 PDARVSTPL W+EV P FT+ TV R A++GDP AG+DDA G LD LL LA +L Sbjct 247 PLPDARVSTPLTWDEVRSTRPEQFTVPTVLGRFAEVGDPHAGIDDAAGSLDGLLALAAKL 306 Query 309 GPPQKA----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVD 358 GP +K QS PLIE+AR +TR EA+AALD W+ R+ L PADVLVD Sbjct 307 GPAEKPPRGGDGSGRRQSVMPLIEVARTRTRPEALAALDEWKSRHADLVPALHPADVLVD 366 Query 359 GMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 GMRG SS+WYR+R+NLQH+P +RP QEELIADY PW Sbjct 367 GMRGSSSLWYRVRVNLQHIPEAERPAQEELIADYDPW 403 >gi|323357240|ref|YP_004223636.1| eukaryotic-type DNA primase [Microbacterium testaceum StLB037] gi|323273611|dbj|BAJ73756.1| predicted eukaryotic-type DNA primase [Microbacterium testaceum StLB037] Length=409 Score = 508 bits (1307), Expect = 8e-142, Method: Compositional matrix adjust. Identities = 258/400 (65%), Positives = 296/400 (74%), Gaps = 15/400 (3%) Query 7 PVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRF 66 P LD+ G +V VT P RVVF G TK DLVRYYLAVAEGA+RG GRPM+LKRF Sbjct 8 PEILDIDGHEVRVTSPDRVVFA----EPGLTKLDLVRYYLAVAEGALRGAGGRPMVLKRF 63 Query 67 VKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPH 126 KG+ E FQKR P N P ++D A LHYASG SA E VI DAAGLAWV+NLGC+DLNPH Sbjct 64 SKGLDQEPFFQKRVPENHPAFIDTATLHYASGTSAEETVIRDAAGLAWVVNLGCLDLNPH 123 Query 127 PVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYA 186 PV A DLDHPDELRVDLDPMPGV W ++V+VA + R+VLED+GL WPKTSGSRG H+ Sbjct 124 PVRAEDLDHPDELRVDLDPMPGVDWAQIVDVAFIARDVLEDHGLVGWPKTSGSRGLHILV 183 Query 187 RIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAY 245 RI P W + VRLAA+T+AREVE R P AT+RWWKEE+ E VFVDFNQNAKDRTVASAY Sbjct 184 RIRPEWDYADVRLAAETLAREVENRAPGLATARWWKEEQGESVFVDFNQNAKDRTVASAY 243 Query 246 SVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA 305 S+RA P ARVSTPL W+EV P FT+ VP R IGDP AG+DDA G LD LL LA Sbjct 244 SIRALPGARVSTPLTWDEVRDRRPEEFTVLAVPERFRAIGDPHAGIDDAAGSLDALLALA 303 Query 306 EELGPPQKA----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADV 355 +ELGP +K S PLIE+AR KT+ EA+ AL+ W+ R+P A A L PADV Sbjct 304 KELGPAEKPPRGSDGSGRRASTMPLIEVARTKTKPEALDALETWKKRHPDATAALHPADV 363 Query 356 LVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 +VDGMRG SS+WYR+R+NLQHVP +RP QEELIADY PW Sbjct 364 MVDGMRGSSSLWYRVRVNLQHVPDAERPAQEELIADYDPW 403 >gi|325965159|ref|YP_004243065.1| DNA polymerase LigD, polymerase domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471246|gb|ADX74931.1| DNA polymerase LigD, polymerase domain protein [Arthrobacter phenanthrenivorans Sphe3] Length=414 Score = 507 bits (1306), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 258/397 (65%), Positives = 298/397 (76%), Gaps = 15/397 (3%) Query 10 LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKG 69 L + G +V ++ P +V+FP +G TK DLV+YYL+VAEGA+RG GRPM+LKRF KG Sbjct 11 LSIAGTEVRISSPDKVLFP----EQGLTKLDLVQYYLSVAEGALRGAGGRPMVLKRFPKG 66 Query 70 ISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVL 129 I AE FQKR P N P ++D A L YASG SA EAVI DAAGLAWV+NLGC+DLNPHPV Sbjct 67 IDAEPFFQKRVPENHPPFIDTATLRYASGTSAEEAVIRDAAGLAWVVNLGCLDLNPHPVR 126 Query 130 AGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIA 189 A DL+HPDELRVDLDPMPGV W ++V+VA V REVL D GL WPKTSGSRG H+ RIA Sbjct 127 AEDLEHPDELRVDLDPMPGVDWSQIVDVAYVAREVLHDVGLVGWPKTSGSRGLHILVRIA 186 Query 190 PCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYSVR 248 P WS+ VRLAA+T+AREVE R P AT+RWWKEER E VFVDFNQNAKDRTVASAYSVR Sbjct 187 PQWSYRDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVASAYSVR 246 Query 249 ATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAEEL 308 PDARVSTPL W+EV P FT+ TVP R +GDP AG+DDAVGRLD LL LA EL Sbjct 247 PLPDARVSTPLAWDEVRTARPEQFTVLTVPGRFGRMGDPHAGIDDAVGRLDGLLALAAEL 306 Query 309 GPPQKA----------QSAKPLIEIARAKTRAEAMAALDIWRDRYPGAAALLRPADVLVD 358 GP +K QS PLIE+AR KT+ EA+AALD W+ R+ L PAD+LVD Sbjct 307 GPAEKPPRSGDGSGRRQSVMPLIEVARTKTKPEALAALDEWKSRHADLVPALHPADILVD 366 Query 359 GMRGPSSIWYRIRINLQHVPADQRPPQEELIADYSPW 395 GMRG SS+WYR+R+NLQHV +RPPQEELIA+Y PW Sbjct 367 GMRGSSSLWYRVRVNLQHVTEPERPPQEELIANYDPW 403 >gi|337278308|ref|YP_004617779.1| eukaryotic-type DNA primase [Ramlibacter tataouinensis TTB310] gi|334729384|gb|AEG91760.1| eukaryotic-type DNA primase-like protein [Ramlibacter tataouinensis TTB310] Length=410 Score = 450 bits (1158), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 240/411 (59%), Positives = 293/411 (72%), Gaps = 30/411 (7%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 M+ APV L V GR+++VTHPG+++FP G TK DLV YYLAVAEGA+RG RP Sbjct 1 MTSPDAPVRLQVEGRELVVTHPGKLLFP----EAGLTKLDLVNYYLAVAEGALRGAGSRP 56 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 ++ R+ GI E FQKRAPA+RP WV+V+ + + SGR+A E V DAA LAW+ LGC Sbjct 57 CVMVRYPDGIGGEFFFQKRAPASRPAWVEVSTIRFPSGRTAEEVVPRDAATLAWMAQLGC 116 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 ++L+PHPV A DLDHPDELRVDLDPMPGVAW+++ +VA VVREVL + GLT WPKTSGSR Sbjct 117 IELHPHPVRADDLDHPDELRVDLDPMPGVAWRQIQQVAAVVREVLHEVGLTGWPKTSGSR 176 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 G HV ARI W+F QVR AA +AREVERR PD ATSRWWKEER GVFVD+NQNAKDRT Sbjct 177 GIHVIARIQRRWTFDQVRRAALALAREVERRAPDLATSRWWKEERHGVFVDYNQNAKDRT 236 Query 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 VASAYSVR PDARVS P+ W+E+ CDPA FT+ TVP+RL IGDP AG+D+A L+ Sbjct 237 VASAYSVRPKPDARVSAPVTWDELQQCDPADFTLRTVPARLRAIGDPHAGIDEAACSLEA 296 Query 301 LLMLA------------------EELGPPQKA--------QSAKPLIEIARAKTRAEAMA 334 LL L+ + G P +A Q+A+PLIEIARA A+A+A Sbjct 297 LLGLSARQEAQGQGDAPWPPHYRRQSGEPTRAPPSTRARRQAARPLIEIARADREADALA 356 Query 335 ALDIWRDRYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQ 385 A W+ ++P AA L+PADVLVD MR SS+W+R+RINL+HVPA RP + Sbjct 357 AAQAWKQKHPQVAAHLQPADVLVDRMRSSSSLWWRVRINLEHVPARLRPKE 407 >gi|153005689|ref|YP_001380014.1| DNA primase small subunit [Anaeromyxobacter sp. Fw109-5] gi|152029262|gb|ABS27030.1| DNA primase small subunit [Anaeromyxobacter sp. Fw109-5] Length=427 Score = 446 bits (1148), Expect = 3e-123, Method: Compositional matrix adjust. Identities = 236/412 (58%), Positives = 290/412 (71%), Gaps = 31/412 (7%) Query 8 VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFV 67 V L++ GR+V+++ P ++ F G TK +LV YYLAV GA+RGV GRPM LKRFV Sbjct 9 VVLEIAGREVVISSPDKLKFRG----AGVTKLELVEYYLAVHGGALRGVQGRPMALKRFV 64 Query 68 KGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHP 127 E FQKRAP +RP WV+V EL + SGR+A E V+ DAA LAWV+NLGC+DLNPHP Sbjct 65 DDAEGEFFFQKRAPESRPGWVEVVELAFPSGRTAHEVVVRDAAQLAWVVNLGCIDLNPHP 124 Query 128 VLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYAR 187 V A DL+HPDELRVDLDP+PGV W+RV EVA VVREVL D+GLT WPKTSGSRG HVYAR Sbjct 125 VRADDLEHPDELRVDLDPVPGVGWERVREVASVVREVLADHGLTGWPKTSGSRGMHVYAR 184 Query 188 IAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAYSV 247 I W+F +VR AA +AREVERR P +ATS+WWKEER GVFVD+NQNAKDRT ASAYSV Sbjct 185 IERRWTFTEVREAALALAREVERRAPRSATSKWWKEERHGVFVDYNQNAKDRTTASAYSV 244 Query 248 RATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLML--- 304 R TPDARVSTP+ W+E+P CDPA FT+ TVP+R+A +GDP AG+D + G L LL L Sbjct 245 RPTPDARVSTPITWDELPACDPADFTLRTVPARVAAMGDPGAGIDASAGSLLPLLELSAR 304 Query 305 --AEELG----PPQKAQSAK------------------PLIEIARAKTRAEAMAALDIWR 340 A+ +G PP A++A PL+ +ARA + +A+A + WR Sbjct 305 QRADGMGDAPWPPHYAKAADEPSRVQPSRRKGAPRARMPLVVVARAARKDDALAGFERWR 364 Query 341 DRYPGAAALLRPADVLVDGMRGPSSIWYRIRINLQHVPADQRPPQEELIADY 392 R+P AAA LRP DVLVD MRG + W R+R+NL++VP +RP E D+ Sbjct 365 ARHPEAAARLRPEDVLVDAMRGRYTTWTRVRVNLRNVPEPERPAPEAPDPDF 416 >gi|322434050|ref|YP_004216262.1| DNA primase small subunit [Acidobacterium sp. MP5ACTX9] gi|321161777|gb|ADW67482.1| DNA primase small subunit [Acidobacterium sp. MP5ACTX9] Length=468 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 211/452 (47%), Positives = 261/452 (58%), Gaps = 71/452 (15%) Query 10 LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKG 69 L+V G QV +T+P + F +K D+VRYYL+VA GA++G+ RP++LKRFV G Sbjct 10 LEVEGHQVRITNPDKPYF---TRETKLSKIDIVRYYLSVAPGALQGIQDRPIVLKRFVNG 66 Query 70 ISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVL 129 E +QKRAP++ P ++ A L + SGR+A E V+ A GLAW+ NLGC++L+PHPV Sbjct 67 AEQEPFYQKRAPSDLPAYLRTATLSFPSGRTAEEVVVDTAPGLAWIANLGCLELHPHPVR 126 Query 130 AGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIA 189 GDLDHPDELRVDLDP PGV W V VAL V VL++ L WPKTSGSRG H+ RI Sbjct 127 TGDLDHPDELRVDLDPGPGVEWPDVKAVALEVEAVLKENNLIGWPKTSGSRGIHINVRIH 186 Query 190 PCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAYSVRA 249 P W+F +VR AA +AR VERR+P ATS+WWKEER GVF+D+NQNAKDRT SAYSVR Sbjct 187 PQWTFTEVRRAALALARAVERRVPTLATSKWWKEERHGVFLDYNQNAKDRTTCSAYSVRP 246 Query 250 TPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA---- 305 PDARVS PL W EVP +PA FT+ T+P+R A +G+P A MD G L+ LL LA Sbjct 247 LPDARVSAPLFWHEVPQVEPADFTVLTMPTRFATLGNPHAEMDANPGGLEALLELAARDE 306 Query 306 -EELG----PPQ--------------------------------KAQSAKPLIEIARAKT 328 E LG PP K QS + + A Sbjct 307 SEGLGDAPWPPHFSKQEGESKRVAPSKAKSFSSQINEGFGAYRFKKQSKAAEPDQSSADP 366 Query 329 RAEAMAALDIWRDRYP--------------------------GAAALLRPADVLVDGMRG 362 AEA A R+P AAAL P D+LVD MRG Sbjct 367 SAEAKPARKARTSRHPLITISQSPDKAAAEAGLERWKLLYPIAAAALT-PEDILVDRMRG 425 Query 363 PSSIWYRIRINLQHVPADQRPPQEELIADYSP 394 S +WYRIR+NL++VP RPPQ+ D P Sbjct 426 ASYVWYRIRVNLKNVPEPDRPPQQTPDPDDDP 457 >gi|262199778|ref|YP_003270987.1| DNA primase small subunit [Haliangium ochraceum DSM 14365] gi|262083125|gb|ACY19094.1| DNA primase small subunit [Haliangium ochraceum DSM 14365] Length=358 Score = 339 bits (869), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 179/307 (59%), Positives = 213/307 (70%), Gaps = 4/307 (1%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 M + + V L+V GR+V V+ P ++ FPA G TK DLVRYY VAE A+RGV RP Sbjct 15 MGKRSEAVMLEVGGREVRVSSPDKLYFPA----AGITKIDLVRYYATVAEHALRGVRDRP 70 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 ++LKRFV GIS + FQKRAP RP WV+ EL + SG + V+ + A L W+ LGC Sbjct 71 VVLKRFVDGISGKPFFQKRAPGKRPSWVESVELAFPSGERVEQIVVREPATLVWMAQLGC 130 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 +DLNPH V DL HPDELR+DLDP PGV W V VAL R VLE++GL WPKTSGSR Sbjct 131 IDLNPHAVRTSDLAHPDELRIDLDPCPGVPWDSVRRVALETRAVLEEHGLRGWPKTSGSR 190 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRT 240 G HVYAR+ W F VR AA +AREVERR P A+S WWKE+R+GVF+DFNQN +DRT Sbjct 191 GMHVYARLETRWDFVAVRRAALALAREVERRAPGLASSEWWKEKRQGVFLDFNQNLQDRT 250 Query 241 VASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDR 300 A+AYSVR PDARVSTPL WEEV C+ FT+ TVP RLA+ GD AG+DD G LD Sbjct 251 TAAAYSVRPVPDARVSTPLTWEEVAVCEAEDFTLLTVPLRLAERGDLGAGIDDDAGSLDS 310 Query 301 LLMLAEE 307 LL LA+E Sbjct 311 LLSLADE 317 >gi|284045285|ref|YP_003395625.1| DNA primase small subunit [Conexibacter woesei DSM 14684] gi|283949506|gb|ADB52250.1| DNA primase small subunit [Conexibacter woesei DSM 14684] Length=380 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 163/296 (56%), Positives = 208/296 (71%), Gaps = 4/296 (1%) Query 10 LDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFVKG 69 L+V GR+V +++P +V FP + G+TK DL +YY+AVA+ A+ + RP ++KRFV G Sbjct 9 LEVAGREVRLSNPAKVYFP----KPGWTKLDLAQYYMAVADAALVHLRERPTVMKRFVNG 64 Query 70 ISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHPVL 129 I+ + ++QKR P P+W++ A + + SGR+A E V +DAA L W NLG +D NP P Sbjct 65 ITEDPIWQKRVPQRVPEWLETATVSFPSGRTAEELVANDAAHLVWAANLGVIDFNPWPAR 124 Query 130 AGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYARIA 189 DLDHPDELRVDLDP PGV W V A+VVR+VL +YGL +PKTSGS+G HV R+ Sbjct 125 RADLDHPDELRVDLDPTPGVGWDEVRRTAMVVRDVLAEYGLRGYPKTSGSKGIHVNVRVE 184 Query 190 PCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREGVFVDFNQNAKDRTVASAYSVRA 249 P W +VR AA +AREVERR PD ATS+WWKEER GVFVD+NQNA+DRTVAS YSVR Sbjct 185 PRWDHLEVRRAALALAREVERRAPDLATSKWWKEERHGVFVDYNQNARDRTVASCYSVRP 244 Query 250 TPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA 305 T DARVS L W+EVP +P + TVP RL +GDP A +DD G L++LL LA Sbjct 245 TVDARVSCALEWDEVPAVEPGDLRLDTVPERLRTVGDPAASIDDEPGSLEQLLDLA 300 >gi|297162315|gb|ADI12027.1| hypothetical protein SBI_08909 [Streptomyces bingchenggensis BCW-1] Length=334 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 156/304 (52%), Positives = 198/304 (66%), Gaps = 5/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MA L V R V +T+PG+V FP ++G+TK D+ RYYLAV EG +R + RP +L Sbjct 1 MAETAELTVGERTVRLTNPGKVYFP----QRGFTKLDVARYYLAVGEGVLRALRDRPTML 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +R+ G+ E+ FQKRAP N P+W+ + + SGR A E + A + W NLGC+ Sbjct 57 ERYPDGVEGESFFQKRAPKNLPEWIPTGRISFPSGRHADEICPTEPAAVVWAANLGCLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV D DHPDELR+DLDP PG ++ V A +R VLE+ GL WPKTSG RG H Sbjct 117 HPWPVRRQDTDHPDELRIDLDPQPGTDYEDAVWAAGQLRPVLEELGLRGWPKTSGGRGLH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V+ I P W+F QVR AA +ARE+ERR P T+ WWKEER E VFVD+NQ A+DRT+A Sbjct 177 VFVPIEPVWTFTQVRRAAIAIARELERRAPRRITTAWWKEERGEKVFVDYNQTARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SAYSVR P A VS PLHWEEVP P F +AT+P R ++GD A MD+ V RL+ L Sbjct 237 SAYSVRPRPHAPVSAPLHWEEVPDARPRDFDLATMPVRFRELGDVHADMDEQVCRLEAAL 296 Query 303 MLAE 306 LA+ Sbjct 297 ELAD 300 >gi|302540329|ref|ZP_07292671.1| DNA polymerase LigD, polymerase domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302457947|gb|EFL21040.1| DNA polymerase LigD, polymerase domain protein [Streptomyces himastatinicus ATCC 53653] Length=334 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 154/304 (51%), Positives = 199/304 (66%), Gaps = 5/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MA V LDV GR V +++PG+V FP +G+TK DL RYYLAV +G +R + RP L Sbjct 1 MAETVELDVGGRTVRLSNPGKVYFP----ERGFTKLDLARYYLAVGDGVLRALRDRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +R+ G+ E+ FQKRAP N PDW+ + + SGR A E + A + W NLGC+ Sbjct 57 ERYPDGVEGESFFQKRAPKNLPDWIPTGRISFPSGRYADELCPTETAAVVWAANLGCLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV D +HPDELR+DLDP PG + V A +R+VL++ GL WPKTSG RG H Sbjct 117 HPWPVRRPDTEHPDELRIDLDPQPGTEYGDAVRAAGELRQVLDELGLRGWPKTSGGRGLH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V+ IAP W+F QVR +A VARE+ERR P+ T+ WWKEER E +FVD+NQ A+DRT+A Sbjct 177 VFVPIAPEWTFTQVRRSAIAVARELERRAPERITTAWWKEERGEKIFVDYNQTARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SAYSVR P A VS PL W+EVP P F +AT+P R ++GD A MD+ RL+ L Sbjct 237 SAYSVRPRPHAPVSAPLRWDEVPDARPRDFDLATMPVRYREVGDVHADMDEHAYRLESAL 296 Query 303 MLAE 306 LA+ Sbjct 297 ELAD 300 >gi|345011174|ref|YP_004813528.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces violaceusniger Tu 4113] gi|344037523|gb|AEM83248.1| DNA polymerase LigD, polymerase domain protein [Streptomyces violaceusniger Tu 4113] Length=334 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 154/303 (51%), Positives = 196/303 (65%), Gaps = 5/303 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MA V L V GR V VT+PG+V FP +G+TK DL RYYLAV EGA+R + RP L Sbjct 1 MAESVELTVGGRTVRVTNPGKVYFP----ERGFTKLDLARYYLAVGEGALRALRDRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +R+ G+ E+ FQKRAP N P+W+ + + SGR A E + A + W NLG + Sbjct 57 ERYPDGVDGESFFQKRAPKNLPEWIPTGRISFPSGRHADEICPTETAAVVWAANLGSLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV D +HPDELR+DLDP PG ++ V A +REVL+ GL WPKTSG RG H Sbjct 117 HPWPVRREDTEHPDELRIDLDPQPGTDYEDAVRAAEELREVLDGLGLRGWPKTSGGRGLH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V+ IAP W+F QVR +A +ARE+ERR P+ T++WWKEER +FVD+NQ A+DRT+A Sbjct 177 VFVPIAPEWTFTQVRRSAIAIARELERRAPERVTTKWWKEERGRKIFVDYNQTARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SAYSVR P A VS PL W EVP P F +AT+P R ++GD A MD+ RL+ L Sbjct 237 SAYSVRPRPHAPVSAPLRWAEVPDARPRDFDLATMPVRYRELGDVHADMDEHAFRLESAL 296 Query 303 MLA 305 LA Sbjct 297 ELA 299 >gi|291449041|ref|ZP_06588431.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351988|gb|EFE78892.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length=340 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 153/304 (51%), Positives = 194/304 (64%), Gaps = 5/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M A V LD GR V +++P +V FP KGYTK D+ Y+LAV G R + RP L Sbjct 1 MGAAVELDAGGRAVRLSNPDKVYFP----EKGYTKRDVAEYFLAVGPGITRALNHRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +RFV G+ + +QKRAP N P+W+ A + + SGR A E + A + W NLG + Sbjct 57 QRFVDGVEGDFFYQKRAPKNLPEWIPTARIAFPSGRPADEICPTELAAVIWAANLGTLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV AGD DHPDELR+DLDP PG + V A +R VLED+G+ WPKTSG RG H Sbjct 117 HPWPVRAGDTDHPDELRIDLDPQPGTDYADAVTAAHELRSVLEDHGVRGWPKTSGGRGMH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V+ I P WSF +VR AA RE+ERR+P+ T+ WWKEER E +FVDFNQ A+DRT+A Sbjct 177 VFVPIEPAWSFVEVRRAAIAAGRELERRMPERVTTAWWKEERGERIFVDFNQTARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SAYSVR P A VS PL W+E+ +P F + T+P R A++GD A MD RLD LL Sbjct 237 SAYSVRPFPHAPVSAPLRWDEIDDAEPRDFDIRTLPVRYAELGDVHADMDQEAFRLDGLL 296 Query 303 MLAE 306 LA+ Sbjct 297 ELAD 300 >gi|117928585|ref|YP_873136.1| hypothetical protein Acel_1378 [Acidothermus cellulolyticus 11B] gi|117649048|gb|ABK53150.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B] Length=339 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 152/304 (50%), Positives = 195/304 (65%), Gaps = 5/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M+ V L V GR V ++HPG++ FPA G TK DLVRYYLAV +G +R + RP L Sbjct 1 MSDAVELTVGGRTVRISHPGKLYFPA----LGATKLDLVRYYLAVGDGIVRALYERPCTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +RF G+ + +FQKR PA+RPDW+ A + + SGR A E + D A + W +N+G + Sbjct 57 QRFPDGVDGKMIFQKRVPASRPDWIQTARVQFPSGRQADELCVIDFAAVIWAVNMGTIVF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P P D +HPDELR+DLDP PG + V V +V E+L++ G +PKTSG RG H Sbjct 117 HPWPSRRPDTEHPDELRIDLDPQPGTGFAEVRAVGRLVHELLDELGYRGFPKTSGGRGLH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREG-VFVDFNQNAKDRTVA 242 V RI P W F VR AA ARE+ERR P ATS WWKEER +F+DFNQNA+DRT+A Sbjct 177 VLVRIRPEWDFVAVRRAALAFAREIERRAPQLATSAWWKEERGARIFLDFNQNARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 +AYSVRA P A VSTP+ W E+ +P FT+ATVP R A IGD +DD L LL Sbjct 237 AAYSVRANPRATVSTPISWAELDDAEPDDFTIATVPERFAAIGDLHRTIDDIAHDLSPLL 296 Query 303 MLAE 306 +A+ Sbjct 297 EMAD 300 >gi|182434816|ref|YP_001822535.1| hypothetical protein SGR_1023 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463332|dbj|BAG17852.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=345 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 152/304 (50%), Positives = 194/304 (64%), Gaps = 5/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M A V LD GR V +++P +V FP +KGYTK D+ Y+LAV G R + RP L Sbjct 1 MGAAVELDAGGRAVRLSNPDKVYFP----QKGYTKRDVAEYFLAVGPGITRALNHRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +RFV G+ + +QKRAP N P+W+ A + + SGR A E + A + W NLG + Sbjct 57 QRFVDGVEGDFFYQKRAPKNLPEWIPTARIAFPSGRPADEICPTELAAVIWAANLGTLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV AGD DHPDELR+DLDP PG + V A +R VLED+G+ WPKTSG RG H Sbjct 117 HPWPVRAGDTDHPDELRIDLDPQPGTDYADAVTAAHELRSVLEDHGVRGWPKTSGGRGMH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V+ I P W+F +VR AA RE+ERR+P+ T+ WWKEER E +FVDFNQ A+DRT+A Sbjct 177 VFVPIEPAWTFVEVRRAAIAAGRELERRMPERVTTAWWKEERGERIFVDFNQTARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SAYSVR P A VS PL WEE+ +P F + T+P R A++GD A MD RLD LL Sbjct 237 SAYSVRPFPHAPVSAPLRWEEIDDAEPRDFDIRTLPVRYAELGDVHADMDQEAFRLDALL 296 Query 303 MLAE 306 A+ Sbjct 297 ESAD 300 >gi|288923415|ref|ZP_06417541.1| DNA polymerase LigD, polymerase domain protein [Frankia sp. EUN1f] gi|288345238|gb|EFC79641.1| DNA polymerase LigD, polymerase domain protein [Frankia sp. EUN1f] Length=353 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 154/318 (49%), Positives = 201/318 (64%), Gaps = 17/318 (5%) Query 2 SRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPM 61 ++ P+ LDV GR V V++P R+ FP G TK DLVRYY++V EG +R + RP Sbjct 4 AQYGEPIELDVSGRTVRVSNPDRIYFP----EAGVTKIDLVRYYVSVGEGIVRALNQRPT 59 Query 62 ILKRFVKGI------------SAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDA 109 ++R+ G+ +A +QKR P N PD+V A + + SGR+A E + +A Sbjct 60 TMERWPNGVIEGARLTQRDGTPGDAFYQKRVPRNAPDFVRTARITFPSGRAADEICVTEA 119 Query 110 AGLAWVINLGCVDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYG 169 A +AW +NLG + +P PV + D+DHPDELR+DLDP PG + V VA +L++ G Sbjct 120 AVVAWAVNLGTITFHPWPVRSFDVDHPDELRIDLDPQPGTDFADAVVVAGEAHALLDELG 179 Query 170 LTAWPKTSGSRGFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEEREG-V 228 T WPKTSG RG H+Y RI P W+F QVR A RE+ERR PD T+ WWKEER V Sbjct 180 WTGWPKTSGGRGLHIYVRIEPRWTFTQVRQGAIAFGRELERRRPDLITTSWWKEERGAKV 239 Query 229 FVDFNQNAKDRTVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPW 288 FVD+NQNA+DRT+ASAYS R P A VSTP+ W+E+P +P FT+ TVP RLA +GDPW Sbjct 240 FVDYNQNARDRTIASAYSARPRPWAPVSTPVSWDELPDLEPRDFTVITVPDRLARLGDPW 299 Query 289 AGMDDAVGRLDRLLMLAE 306 AG+DD L LL E Sbjct 300 AGIDDTRHDLTPLLQWWE 317 >gi|297203779|ref|ZP_06921176.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197711829|gb|EDY55863.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sviceus ATCC 29083] Length=341 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 152/304 (50%), Positives = 193/304 (64%), Gaps = 6/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M V L+ GR V ++ P ++ FP +G+TK DL RYY AVA G +R + RP L Sbjct 1 MGDAVELEAGGRTVRLSSPDKIFFP----ERGFTKLDLARYYQAVAPGILRALRNRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +R+ G++ E FQKRAP N PDW+ A + + SGRSA E + A + W G + Sbjct 57 ERYPDGVTGENFFQKRAPKNMPDWIPTAHITFPSGRSADEMCPTEEAAVLWAAQYGTLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDY-GLTAWPKTSGSRGF 182 +P PV D+DHPDELR+DLDP PG + V A +R VLE++ GL WPKTSG RG Sbjct 117 HPWPVRREDVDHPDELRIDLDPQPGTDYDDAVRAAHELRSVLEEFGGLRGWPKTSGGRGL 176 Query 183 HVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTV 241 HV+ I P W+F QVR AA V RE+ERR+PD T +WWKEER E +F+D+NQ A+DRT+ Sbjct 177 HVFVPIEPRWTFTQVRRAAIAVGREMERRMPDHVTIKWWKEERGERIFIDYNQTARDRTI 236 Query 242 ASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRL 301 ASAYSVR P A VS PL WEEV P F +AT+P+R A++GD A MDD LD L Sbjct 237 ASAYSVRPRPHAPVSAPLRWEEVGQAHPQDFDIATMPARFAELGDVHADMDDHAFSLDAL 296 Query 302 LMLA 305 L LA Sbjct 297 LDLA 300 >gi|345003348|ref|YP_004806202.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. SirexAA-E] gi|344318974|gb|AEN13662.1| DNA polymerase LigD, polymerase domain protein [Streptomyces sp. SirexAA-E] Length=337 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 160/341 (47%), Positives = 204/341 (60%), Gaps = 17/341 (4%) Query 8 VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFV 67 + LD GR V +++P +V FP KGYTK D+ Y+LAV G +R + RP L+RFV Sbjct 1 MELDADGRAVRLSNPDKVYFPD----KGYTKKDVADYFLAVGPGILRALRDRPTTLQRFV 56 Query 68 KGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHP 127 G+ E +QKRAP N PDW A + + SGR A E + + W NLG + +P P Sbjct 57 DGVEGEFFYQKRAPKNLPDWTPTARIEFPSGRHADEMCPTELGAVLWAANLGTLTFHPWP 116 Query 128 VLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYAR 187 V D DHPDELR+DLDP PG + V A +R VL+D+GL WPKTSG RG HV+ Sbjct 117 VRRADTDHPDELRIDLDPQPGTDYADAVRAAHELRSVLDDHGLRGWPKTSGGRGLHVFVP 176 Query 188 IAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYS 246 I P W+F QVR AA RE+ERR+PD T+ WWKEER E +FVD+NQ A+DRT+ASAYS Sbjct 177 IVPEWTFTQVRRAAIAAGRELERRMPDRVTTAWWKEERGERIFVDYNQTARDRTIASAYS 236 Query 247 VRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA- 305 VR P A VS PL W+EV +P F + T+P R A++GD A MD+ RLD LL LA Sbjct 237 VRPFPHAPVSAPLRWDEVDDVEPRDFDIRTMPRRFAEVGDLHADMDEHAFRLDGLLELAR 296 Query 306 -----EELG----PPQ--KAQSAKPLIEIARAKTRAEAMAA 335 ELG PP+ K ++ +RA+ E A Sbjct 297 RDEHEHELGDLPYPPEYPKMPGEPKRVQPSRARKEDEGGTA 337 >gi|328886442|emb|CCA59681.1| ATP-dependent DNA ligase [Streptomyces venezuelae ATCC 10712] Length=343 Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 153/306 (50%), Positives = 195/306 (64%), Gaps = 5/306 (1%) Query 1 MSRMAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRP 60 M+ AA V L+V R V V++P +V FP GYTK D+V YYLAV +G R + RP Sbjct 1 MAGKAAAVELEVGDRTVRVSNPDKVYFP----EPGYTKLDMVSYYLAVGDGITRALRDRP 56 Query 61 MILKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGC 120 L+R+ G++ E+ FQKRAP PDW+ A + + SGRSA E + A + W NLG Sbjct 57 TTLERYPDGVTGESFFQKRAPKYLPDWIPTAHITFPSGRSADEMCPTEPAAVLWAANLGA 116 Query 121 VDLNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSR 180 V +P PV D DHPDELR+DLDP PG + V A +R VL+++GL WPKTSG R Sbjct 117 VTFHPWPVRRDDTDHPDELRIDLDPQPGTDYADAVRAAHELRAVLDEHGLRGWPKTSGGR 176 Query 181 GFHVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDR 239 G HV+ I P W+F QVR AA RE+ERR+P+ T +WWKEER E +FVD+NQ A+DR Sbjct 177 GLHVFVPILPHWTFTQVRRAAIACGRELERRMPEQVTIKWWKEERGERIFVDYNQTARDR 236 Query 240 TVASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLD 299 T+ASAYSVR P A VS PL WEEV P F + ++P+R A++GD A MDD L+ Sbjct 237 TIASAYSVRPRPHAPVSAPLRWEEVDDAVPQDFDIRSMPARYAEVGDVHADMDDERFSLE 296 Query 300 RLLMLA 305 LL LA Sbjct 297 SLLELA 302 >gi|21225003|ref|NP_630782.1| hypothetical protein SCO6709 [Streptomyces coelicolor A3(2)] gi|289767725|ref|ZP_06527103.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|5139565|emb|CAB45583.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289697924|gb|EFD65353.1| conserved hypothetical protein [Streptomyces lividans TK24] Length=341 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 152/304 (50%), Positives = 194/304 (64%), Gaps = 6/304 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MA V L+ GR V ++ PG+V FP H GYTK D+ RYY AVA G +R + RP L Sbjct 1 MAEAVELEAGGRSVRLSSPGKVFFPEH----GYTKLDVARYYQAVAPGVLRALRERPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +R+ GI+ E +QKRAP PDW+ A + + SGRSA E + A + W G + Sbjct 57 QRYPDGITGEWFYQKRAPKGMPDWIPTAHITFPSGRSADEMCPTEEAAVLWAAQYGTLTF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDY-GLTAWPKTSGSRGF 182 +P PV D+DHPDELR+DLDP PG + A +R VLE++ GL WPKTSG RG Sbjct 117 HPWPVRRDDVDHPDELRIDLDPQPGTDYDDAARAAHELRAVLEEFGGLRGWPKTSGGRGI 176 Query 183 HVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTV 241 HV+ I P W+F QVR AA V RE+ERR+P+ T +WWKEER E +F+D+NQ A+DRT+ Sbjct 177 HVFVPIEPRWTFTQVRRAAIAVGREMERRMPERVTIKWWKEERGERIFIDYNQTARDRTI 236 Query 242 ASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRL 301 ASAYSVR P+A VS PL W+EV P F + T+P+R A++GD AGMDD LD L Sbjct 237 ASAYSVRPRPNAPVSAPLTWDEVGVAHPRDFDITTMPARFAELGDVHAGMDDTRYSLDAL 296 Query 302 LMLA 305 L LA Sbjct 297 LELA 300 >gi|291455297|ref|ZP_06594687.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291358246|gb|EFE85148.1| conserved hypothetical protein [Streptomyces albus J1074] Length=339 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 148/299 (50%), Positives = 194/299 (65%), Gaps = 5/299 (1%) Query 8 VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFV 67 V L+V G V ++HP +V FP +G+TK D+ +Y+LAV G R + RP L+RF Sbjct 6 VQLEVDGHSVRLSHPDKVWFP----ERGFTKLDVAQYFLAVQGGVTRALRRRPTTLQRFP 61 Query 68 KGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHP 127 G+ E +QKRAP N+PDW+D A + + SGR A E A + W +NLGC+ +P P Sbjct 62 DGVDGEFFYQKRAPKNKPDWLDTARISFPSGRHADEICPDSPAAVLWAVNLGCLTFHPWP 121 Query 128 VLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYAR 187 V A D +HPDELRVDLDP PG ++ V A +RE+L++YGL WPKTSG RG HV+ Sbjct 122 VRAPDTEHPDELRVDLDPQPGTDFRDAVAAAQTLREILDEYGLRGWPKTSGGRGLHVFIP 181 Query 188 IAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYS 246 I P F +VR AA +ARE+ERR+P+ T+ WWKEER E +FVD+NQ A+DRT+A AYS Sbjct 182 IEPVEPFVEVRRAAIALAREIERRMPERVTTAWWKEERGERIFVDYNQTARDRTIAGAYS 241 Query 247 VRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA 305 VR P A VS PL W+E+ DP F + T+ +R A +GD A +DD RLD LL LA Sbjct 242 VRGKPHAPVSAPLRWDELDDADPRDFDLLTMQARYAALGDVHADIDDHAYRLDPLLELA 300 >gi|239992054|ref|ZP_04712718.1| hypothetical protein SrosN1_32454 [Streptomyces roseosporus NRRL 11379] Length=336 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 150/300 (50%), Positives = 192/300 (64%), Gaps = 5/300 (1%) Query 8 VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFV 67 + LD GR V +++P +V FP KGYTK D+ Y+LAV G R + RP L+RFV Sbjct 1 MELDAGGRAVRLSNPDKVYFP----EKGYTKRDVAEYFLAVGPGITRALNHRPTTLQRFV 56 Query 68 KGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHP 127 G+ + +QKRAP N P+W+ A + + SGR A E + A + W NLG + +P P Sbjct 57 DGVEGDFFYQKRAPKNLPEWIPTARIAFPSGRPADEICPTELAAVIWAANLGTLTFHPWP 116 Query 128 VLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYAR 187 V AGD DHPDELR+DLDP PG + V A +R VLED+G+ WPKTSG RG HV+ Sbjct 117 VRAGDTDHPDELRIDLDPQPGTDYADAVTAAHELRSVLEDHGVRGWPKTSGGRGMHVFVP 176 Query 188 IAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYS 246 I P WSF +VR AA RE+ERR+P+ T+ WWKEER E +FVDFNQ A+DRT+ASAYS Sbjct 177 IEPAWSFVEVRRAAIAAGRELERRMPERVTTAWWKEERGERIFVDFNQTARDRTIASAYS 236 Query 247 VRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLAE 306 VR P A VS PL W+E+ +P F + T+P R A++GD A MD RLD LL LA+ Sbjct 237 VRPFPHAPVSAPLRWDEIDDAEPRDFDIRTLPVRYAELGDVHADMDQEAFRLDGLLELAD 296 >gi|254393498|ref|ZP_05008635.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294816025|ref|ZP_06774668.1| DNA primase, small subunit [Streptomyces clavuligerus ATCC 27064] gi|197707122|gb|EDY52934.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294328624|gb|EFG10267.1| DNA primase, small subunit [Streptomyces clavuligerus ATCC 27064] Length=338 Score = 291 bits (746), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 151/302 (50%), Positives = 194/302 (65%), Gaps = 5/302 (1%) Query 5 AAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILK 64 A + L+V R V V++P +V FP +GYTK D+V YYLAV EG R + RP L+ Sbjct 3 AKALELEVGDRTVRVSNPDKVYFP----ERGYTKLDMVTYYLAVGEGITRALRDRPTTLE 58 Query 65 RFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLN 124 R+ G++ E+ FQKRAP PDW+ A + + SGRSA E + A + W NLG V + Sbjct 59 RYPDGVTGESFFQKRAPKYLPDWIPTAHITFPSGRSADEMCPTEPAAVVWAANLGAVTFH 118 Query 125 PHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHV 184 P PV D DHPDELR+DLDP PG + V A +R VL+++GL WPKTSG RG H+ Sbjct 119 PWPVRRADPDHPDELRLDLDPQPGTGYADAVRAAHELRAVLDEHGLCGWPKTSGGRGLHI 178 Query 185 YARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVAS 243 + IAP W+F QVR AA RE+ERR+PD T +WWKEER E +FVD+NQ A+DRT+AS Sbjct 179 FVPIAPRWTFTQVRRAAIACGRELERRMPDRVTIKWWKEERGERIFVDYNQTARDRTIAS 238 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVR P A VS PL WEE+ P F + T+P+R A++GD A MD+ L+ LL Sbjct 239 AYSVRPRPHAPVSAPLRWEEIDDAVPEDFDITTMPTRYAELGDVHADMDEHRFGLEPLLE 298 Query 304 LA 305 LA Sbjct 299 LA 300 >gi|326444367|ref|ZP_08219101.1| hypothetical protein SclaA2_25016 [Streptomyces clavuligerus ATCC 27064] Length=350 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/302 (50%), Positives = 194/302 (65%), Gaps = 5/302 (1%) Query 5 AAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILK 64 A + L+V R V V++P +V FP +GYTK D+V YYLAV EG R + RP L+ Sbjct 15 AKALELEVGDRTVRVSNPDKVYFP----ERGYTKLDMVTYYLAVGEGITRALRDRPTTLE 70 Query 65 RFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLN 124 R+ G++ E+ FQKRAP PDW+ A + + SGRSA E + A + W NLG V + Sbjct 71 RYPDGVTGESFFQKRAPKYLPDWIPTAHITFPSGRSADEMCPTEPAAVVWAANLGAVTFH 130 Query 125 PHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHV 184 P PV D DHPDELR+DLDP PG + V A +R VL+++GL WPKTSG RG H+ Sbjct 131 PWPVRRADPDHPDELRLDLDPQPGTGYADAVRAAHELRAVLDEHGLCGWPKTSGGRGLHI 190 Query 185 YARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVAS 243 + IAP W+F QVR AA RE+ERR+PD T +WWKEER E +FVD+NQ A+DRT+AS Sbjct 191 FVPIAPRWTFTQVRRAAIACGRELERRMPDRVTIKWWKEERGERIFVDYNQTARDRTIAS 250 Query 244 AYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLM 303 AYSVR P A VS PL WEE+ P F + T+P+R A++GD A MD+ L+ LL Sbjct 251 AYSVRPRPHAPVSAPLRWEEIDDAVPEDFDITTMPTRYAELGDVHADMDEHRFGLEPLLE 310 Query 304 LA 305 LA Sbjct 311 LA 312 >gi|271967970|ref|YP_003342166.1| DNA primase small subunit [Streptosporangium roseum DSM 43021] gi|270511145|gb|ACZ89423.1| DNA primase small subunit [Streptosporangium roseum DSM 43021] Length=334 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/301 (51%), Positives = 197/301 (66%), Gaps = 6/301 (1%) Query 4 MAAP-VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMI 62 MA+P + L V R V VT+P +V FP G TK DLV YY++V EGA+R + RP Sbjct 1 MASPYIELTVGDRVVKVTNPDKVYFP----EIGATKRDLVEYYVSVGEGALRALYDRPTY 56 Query 63 LKRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVD 122 LKR G+ E ++QKR P P+W+ + + SGR+A + + A +A+ NLG VD Sbjct 57 LKRHPDGVETEGIYQKRMPPRHPEWLQTVTVRFPSGRTADALRVTEVAAIAYCANLGTVD 116 Query 123 LNPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGF 182 +P PV + D+DHPDELR+D+DP PG ++ VA V E+L + G+T +PKTSGSRG Sbjct 117 FHPWPVRSCDVDHPDELRIDIDPQPGTGFEEARRVAFAVNEILGELGMTGFPKTSGSRGI 176 Query 183 HVYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTV 241 HV RI P W F QVR AA AREVE R+PD AT+ WWKEER E VF+D+NQNA+DRTV Sbjct 177 HVSLRIEPRWDFTQVRHAAIAFAREVESRVPDLATTAWWKEERGERVFIDYNQNARDRTV 236 Query 242 ASAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRL 301 A+AYSVRA P A VSTPL WEE+ DP F + TVP+R A +GD A +DD ++ L Sbjct 237 AAAYSVRAKPHAPVSTPLTWEELVDADPRDFDIRTVPARFAKLGDVHAAIDDRAFSIEPL 296 Query 302 L 302 L Sbjct 297 L 297 >gi|320007308|gb|ADW02158.1| DNA polymerase LigD, polymerase domain protein [Streptomyces flavogriseus ATCC 33331] Length=336 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/299 (50%), Positives = 190/299 (64%), Gaps = 5/299 (1%) Query 8 VSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMILKRFV 67 + LDV GR V +++P +V FP KGYTK D+ Y+ AV G +R + RP L+RFV Sbjct 1 MELDVDGRAVRLSNPDKVYFP----EKGYTKKDVADYFQAVGPGILRALRERPTTLQRFV 56 Query 68 KGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDLNPHP 127 G+ + +QKRAP N PDW A + + SGR A E + + W NLG + +P P Sbjct 57 DGVEGDFFYQKRAPKNLPDWTPTARIEFPSGRHADEMCPTELGAVLWAANLGTLTFHPWP 116 Query 128 VLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFHVYAR 187 V D DHPDELR+DLDP PG + V A +R VL+D+GL WPKTSG RG HV+ Sbjct 117 VRRADTDHPDELRIDLDPQPGTDYADAVRAAHELRAVLDDHGLRGWPKTSGGRGIHVFVP 176 Query 188 IAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVASAYS 246 + P W+F QVR +A V RE+ERR+PD T+ WWKEER E +FVD+NQ A+DRT+ASAYS Sbjct 177 LVPEWTFTQVRRSAIAVGRELERRMPDRVTTAWWKEERGERIFVDYNQTARDRTIASAYS 236 Query 247 VRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLLMLA 305 VR P A VS PL WEE+ +P F + T+P+R A+ GD A MDD RLD LL LA Sbjct 237 VRPFPHAPVSAPLRWEEIDDAEPRDFDLRTMPARYAEAGDLHADMDDHAFRLDGLLELA 295 >gi|256375706|ref|YP_003099366.1| DNA polymerase LigD, polymerase domain-containing protein [Actinosynnema mirum DSM 43827] gi|255920009|gb|ACU35520.1| DNA polymerase LigD, polymerase domain protein [Actinosynnema mirum DSM 43827] Length=330 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 157/300 (53%), Positives = 194/300 (65%), Gaps = 5/300 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 MA + L V R V V++P +V FP +G TK +V YYLAVAE + + RP L Sbjct 1 MAQALELTVGERVVRVSNPDKVYFP----ERGITKRQVVEYYLAVAEPLLAVLRDRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 KRFV G++ EA +QKR P P+WV + + SGR A + +AA LAW NLG +D Sbjct 57 KRFVDGVAGEAFYQKRVPKGAPEWVRTVGVRFPSGRPAEQVRPTEAAVLAWAANLGTLDF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV AGD DHPDELRVDLDP PG ++ VEVA V+REVL + G+T +PKTSG RG H Sbjct 117 HPWPVRAGDTDHPDELRVDLDPQPGTGFREAVEVAGVLREVLGELGMTGYPKTSGGRGVH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V RI P W F VR A + REVERR PD AT+ WWKEER VF+DFNQ A+DRT+A Sbjct 177 VAVRIRPEWDFVDVRHAVIALGREVERRAPDLATTSWWKEERGRKVFLDFNQAARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SA+SVR TP A VSTP+ WE + DP F + TVP L D+GDP AG+D ++ LL Sbjct 237 SAWSVRGTPGATVSTPVTWESLGEADPVAFDVRTVPDYLRDVGDPHAGLDGEAFGIEELL 296 >gi|297190638|ref|ZP_06908036.1| LOW QUALITY PROTEIN: DNA polymerase LigD polymerase subunit [Streptomyces pristinaespiralis ATCC 25486] gi|297150568|gb|EFH30669.1| LOW QUALITY PROTEIN: DNA polymerase LigD polymerase subunit [Streptomyces pristinaespiralis ATCC 25486] Length=346 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/305 (48%), Positives = 199/305 (66%), Gaps = 5/305 (1%) Query 4 MAAPVSLDVHGRQVIVTHPGRVVFPAHNDRKGYTKFDLVRYYLAVAEGAMRGVAGRPMIL 63 M A V L+ GR V +++P ++ FPA +G+TK D+ +YYL+V G +R + RP L Sbjct 1 MGAAVELEAGGRAVRLSNPDKIYFPA----RGFTKLDVAQYYLSVGPGILRALRDRPTTL 56 Query 64 KRFVKGISAEAVFQKRAPANRPDWVDVAELHYASGRSAAEAVIHDAAGLAWVINLGCVDL 123 +R+ +G+ E+ FQKRAP PDW+ A + + SGR+A E + A + W NLG + Sbjct 57 ERYPEGVEGESFFQKRAPKYLPDWIPTAHISFPSGRTADEICPTEVAAVIWAANLGTLPF 116 Query 124 NPHPVLAGDLDHPDELRVDLDPMPGVAWQRVVEVALVVREVLEDYGLTAWPKTSGSRGFH 183 +P PV +DHPDELR+DLDP PG ++ V+ AL +R +LE++GL WPKTSG RG H Sbjct 117 HPWPVRREAVDHPDELRIDLDPQPGTDFKDAVKAALELRPLLEEHGLRGWPKTSGGRGVH 176 Query 184 VYARIAPCWSFPQVRLAAQTVAREVERRLPDAATSRWWKEER-EGVFVDFNQNAKDRTVA 242 V+ I P W F VR AA VARE+ERR+P T+ WWKEER E +FVD+NQ A+DRT+A Sbjct 177 VFVPIEPRWEFTGVRRAAIAVARELERRMPGRVTTAWWKEERGERIFVDYNQTARDRTIA 236 Query 243 SAYSVRATPDARVSTPLHWEEVPGCDPAVFTMATVPSRLADIGDPWAGMDDAVGRLDRLL 302 SAYSVR P A VS PL W+E+ P+ F +AT+P R A++GD A MDD L+ LL Sbjct 237 SAYSVRPNPRALVSAPLRWDELEHVSPSDFDLATMPGRFAELGDVHADMDDHAFSLESLL 296 Query 303 MLAEE 307 L+ + Sbjct 297 ELSRK 301 Lambda K H 0.321 0.136 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 779602889160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40