BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0275c Length=241 Score E Sequences producing significant alignments: (Bits) Value gi|15839656|ref|NP_334693.1| hypothetical protein MT0287 [Mycoba... 483 8e-135 gi|31791453|ref|NP_853946.1| TetR family transcriptional regulat... 480 6e-134 gi|289445808|ref|ZP_06435552.1| transcriptional regulator, tetR-... 477 6e-133 gi|289748045|ref|ZP_06507423.1| transcriptional regulator [Mycob... 343 1e-92 gi|296167569|ref|ZP_06849906.1| FadD protein [Mycobacterium para... 296 2e-78 gi|118465132|ref|YP_884003.1| FadD27 protein [Mycobacterium aviu... 290 1e-76 gi|41409821|ref|NP_962657.1| FadD27 [Mycobacterium avium subsp. ... 288 7e-76 gi|254821576|ref|ZP_05226577.1| FadD27 [Mycobacterium intracellu... 285 5e-75 gi|336460167|gb|EGO39072.1| hypothetical protein MAPs_43470 [Myc... 285 6e-75 gi|342859248|ref|ZP_08715902.1| FadD27 [Mycobacterium colombiens... 283 2e-74 gi|118616914|ref|YP_905246.1| TetR family transcriptional regula... 280 1e-73 gi|183980564|ref|YP_001848855.1| TetR family transcriptional reg... 278 5e-73 gi|240168495|ref|ZP_04747154.1| FadD27 [Mycobacterium kansasii A... 267 9e-70 gi|333988904|ref|YP_004521518.1| TetR family transcriptional reg... 258 4e-67 gi|108797347|ref|YP_637544.1| TetR family transcriptional regula... 258 6e-67 gi|333989563|ref|YP_004522177.1| TetR family transcriptional reg... 240 1e-61 gi|145220935|ref|YP_001131613.1| TetR family transcriptional reg... 234 7e-60 gi|118468230|ref|YP_885023.1| TetR family transcriptional regula... 233 1e-59 gi|254549214|ref|ZP_05139661.1| transcriptional regulator, tetR-... 230 1e-58 gi|120401434|ref|YP_951263.1| FadD27 [Mycobacterium vanbaalenii ... 208 5e-52 gi|326906033|gb|EGE52966.1| LOW QUALITY PROTEIN: hypothetical pr... 186 3e-45 gi|169631407|ref|YP_001705056.1| TetR family transcriptional reg... 170 2e-40 gi|226308996|ref|YP_002768956.1| TetR family transcriptional reg... 155 4e-36 gi|229491713|ref|ZP_04385534.1| transcriptional regulator, TetR ... 155 5e-36 gi|226364851|ref|YP_002782633.1| TetR family transcriptional reg... 154 1e-35 gi|169629580|ref|YP_001703229.1| putative transcriptional regula... 154 1e-35 gi|111022307|ref|YP_705279.1| transcriptional regulator [Rhodoco... 149 3e-34 gi|343925378|ref|ZP_08764898.1| putative TetR family transcripti... 137 2e-30 gi|262204339|ref|YP_003275547.1| hypothetical protein Gbro_4521 ... 133 2e-29 gi|326383583|ref|ZP_08205269.1| hypothetical protein SCNU_11630 ... 113 2e-23 gi|108797931|ref|YP_638128.1| TetR family transcriptional regula... 106 3e-21 gi|126433587|ref|YP_001069278.1| TetR family transcriptional reg... 106 3e-21 gi|324998578|ref|ZP_08119690.1| TetR family transcriptional regu... 105 5e-21 gi|343924781|ref|ZP_08764320.1| putative TetR family transcripti... 103 2e-20 gi|262203265|ref|YP_003274473.1| TetR family transcriptional reg... 103 3e-20 gi|333921361|ref|YP_004494942.1| TetR family transcriptional reg... 102 4e-20 gi|118470454|ref|YP_885741.1| TetR family transcriptional regula... 99.0 5e-19 gi|120402256|ref|YP_952085.1| TetR family transcriptional regula... 98.2 9e-19 gi|229492962|ref|ZP_04386757.1| transcriptional regulator, TetR ... 90.9 1e-16 gi|118464865|ref|YP_883142.1| TetR family transcriptional regula... 89.7 3e-16 gi|41409254|ref|NP_962090.1| hypothetical protein MAP3156c [Myco... 88.6 7e-16 gi|315446036|ref|YP_004078915.1| TetR family transcriptional reg... 87.8 1e-15 gi|145225685|ref|YP_001136363.1| TetR family transcriptional reg... 86.7 3e-15 gi|342860978|ref|ZP_08717627.1| hypothetical protein MCOL_18942 ... 86.7 3e-15 gi|296166413|ref|ZP_06848845.1| TetR family transcriptional regu... 85.9 4e-15 gi|254821158|ref|ZP_05226159.1| hypothetical protein MintA_14572... 85.1 8e-15 gi|41406757|ref|NP_959593.1| hypothetical protein MAP0659c [Myco... 84.0 2e-14 gi|23573425|gb|AAN38712.1| putative transcriptional regulator [M... 83.6 3e-14 gi|333992165|ref|YP_004524779.1| hypothetical protein JDM601_352... 83.2 3e-14 gi|240171882|ref|ZP_04750541.1| hypothetical protein MkanA1_2138... 83.2 3e-14 >gi|15839656|ref|NP_334693.1| hypothetical protein MT0287 [Mycobacterium tuberculosis CDC1551] gi|57116711|ref|YP_177706.1| TetR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|148660040|ref|YP_001281563.1| MarR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] 55 more sequence titles Length=241 Score = 483 bits (1244), Expect = 8e-135, Method: Compositional matrix adjust. Identities = 241/241 (100%), Positives = 241/241 (100%), Gaps = 0/241 (0%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE Sbjct 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 120 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS Sbjct 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 120 Query 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG 180 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG Sbjct 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG 180 Query 181 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR 240 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR Sbjct 181 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR 240 Query 241 S 241 S Sbjct 241 S 241 >gi|31791453|ref|NP_853946.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121636188|ref|YP_976411.1| TetR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988661|ref|YP_002643348.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] 18 more sequence titles Length=241 Score = 480 bits (1236), Expect = 6e-134, Method: Compositional matrix adjust. Identities = 240/241 (99%), Positives = 240/241 (99%), Gaps = 0/241 (0%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 MTRSDRPYRGVEAAERLATRRRQ LSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE Sbjct 1 MTRSDRPYRGVEAAERLATRRRQLLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 120 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS Sbjct 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 120 Query 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG 180 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG Sbjct 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG 180 Query 181 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR 240 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR Sbjct 181 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR 240 Query 241 S 241 S Sbjct 241 S 241 >gi|289445808|ref|ZP_06435552.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis CPHL_A] gi|289418766|gb|EFD15967.1| transcriptional regulator, tetR-family [Mycobacterium tuberculosis CPHL_A] Length=241 Score = 477 bits (1228), Expect = 6e-133, Method: Compositional matrix adjust. Identities = 239/241 (99%), Positives = 239/241 (99%), Gaps = 0/241 (0%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 MTRSDRPYRGVEAAERLATRRRQ LSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE Sbjct 1 MTRSDRPYRGVEAAERLATRRRQLLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 120 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGR LFS Sbjct 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRPLFS 120 Query 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG 180 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG Sbjct 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAG 180 Query 181 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR 240 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR Sbjct 181 DVRLDPDQLVDQLAALLDELTDPNLSRPRVAATAAKSGANDPQPPEVAGQPPSSARPARR 240 Query 241 S 241 S Sbjct 241 S 241 >gi|289748045|ref|ZP_06507423.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289688573|gb|EFD56061.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length=174 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/171 (99%), Positives = 170/171 (99%), Gaps = 0/171 (0%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 MTRSDRPY GVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE Sbjct 4 MTRSDRPYHGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 63 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 120 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS Sbjct 64 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFS 123 Query 121 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVG 171 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVG Sbjct 124 TQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVG 174 >gi|296167569|ref|ZP_06849906.1| FadD protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897135|gb|EFG76745.1| FadD protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=224 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 156/213 (74%), Positives = 180/213 (85%), Gaps = 2/213 (0%) Query 4 SDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFT 63 S RPYRGVEAA+RLATRR + L+AGL+LLG++Q DI+ +T+R +CR AGL+ RYFYESFT Sbjct 9 SARPYRGVEAAQRLATRRNRLLAAGLELLGAEQRDISGVTVREVCREAGLAARYFYESFT 68 Query 64 DKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQL 123 DKDEFVG V+DW VA+L ATTQAAV+AVPA EQTRAG+ANIVRTIT DARVGRLLFS+QL Sbjct 69 DKDEFVGAVYDWAVADLAATTQAAVSAVPAHEQTRAGLANIVRTITGDARVGRLLFSSQL 128 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 AN VI RKRAESSA+FA+LSGQH L PAND +KA AHF VGGV QTISAWLAGDVR Sbjct 129 ANTVIARKRAESSAMFALLSGQHVGTALQVPANDRIKAAAHFVVGGVAQTISAWLAGDVR 188 Query 184 LDPDQLVDQLAALLDELTDPNLSRPRVAATAAK 216 +PD+LVD LAALLDEL +P L R+A TAA+ Sbjct 189 FEPDRLVDHLAALLDELAEPGLY--RLAETAAE 219 >gi|118465132|ref|YP_884003.1| FadD27 protein [Mycobacterium avium 104] gi|254777323|ref|ZP_05218839.1| FadD27 protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166419|gb|ABK67316.1| FadD27 protein [Mycobacterium avium 104] Length=220 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 162/206 (79%), Positives = 177/206 (86%), Gaps = 0/206 (0%) Query 2 TRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYES 61 T RPYRGVEAAERLATRR + L AGLDLLG++Q +IA +T+R +CRRAGL+ RYFYES Sbjct 7 TSGARPYRGVEAAERLATRRNRLLGAGLDLLGAEQQNIAAVTVRGVCRRAGLAARYFYES 66 Query 62 FTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFST 121 FTDKD+FV VFDWVVAEL ATTQAAVTAVPA EQTRAGMANIVRTIT DARVGRLLFST Sbjct 67 FTDKDQFVACVFDWVVAELAATTQAAVTAVPAHEQTRAGMANIVRTITEDARVGRLLFST 126 Query 122 QLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 QLA+ V+ RKRAESSALFAMLSGQH D L PAND +KA AHF VGGV QTISAWLAG+ Sbjct 127 QLADPVVVRKRAESSALFAMLSGQHVGDALRMPANDRIKAAAHFVVGGVAQTISAWLAGE 186 Query 182 VRLDPDQLVDQLAALLDELTDPNLSR 207 VRL+PDQLVDQLAALLDEL +P L R Sbjct 187 VRLEPDQLVDQLAALLDELAEPALYR 212 >gi|41409821|ref|NP_962657.1| FadD27 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398653|gb|AAS06273.1| FadD27 [Mycobacterium avium subsp. paratuberculosis K-10] Length=217 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 160/206 (78%), Positives = 176/206 (86%), Gaps = 0/206 (0%) Query 2 TRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYES 61 T S RPYRGVEAAERLATRR + L+AGLDLLG + DI+ +T+R +CRRAGL+ RYFYES Sbjct 4 TSSARPYRGVEAAERLATRRNRLLAAGLDLLGDQRPDISAVTVRGVCRRAGLAARYFYES 63 Query 62 FTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFST 121 FTDKDEFV VFDWVVAEL ATTQAAV VPA EQTRAG+ANIVRTIT DARVGRLLFST Sbjct 64 FTDKDEFVSCVFDWVVAELAATTQAAVATVPADEQTRAGIANIVRTITDDARVGRLLFST 123 Query 122 QLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 QLA+ V+ RKRAESSALFAMLSGQH + L PAND +KA AHF VGGVGQTISAWLAGD Sbjct 124 QLADPVVVRKRAESSALFAMLSGQHVGNALQVPANDRIKAAAHFVVGGVGQTISAWLAGD 183 Query 182 VRLDPDQLVDQLAALLDELTDPNLSR 207 VRL+PD+LVD LAALLDEL +PNL R Sbjct 184 VRLEPDELVDHLAALLDELAEPNLYR 209 >gi|254821576|ref|ZP_05226577.1| FadD27 [Mycobacterium intracellulare ATCC 13950] Length=220 Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 159/206 (78%), Positives = 175/206 (85%), Gaps = 0/206 (0%) Query 2 TRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYES 61 T S RPYRGVEAAERLATRR + L+AGLDLLG + DI+ +T+R +CRRAGL+ RYFYES Sbjct 7 TSSARPYRGVEAAERLATRRNRLLAAGLDLLGDQRPDISAVTVRGVCRRAGLAARYFYES 66 Query 62 FTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFST 121 FTDKDEFV VFDWVVAEL ATTQAAV VPA EQTRAG+ANIVRTIT DARVGRLLFST Sbjct 67 FTDKDEFVSCVFDWVVAELAATTQAAVATVPADEQTRAGIANIVRTITDDARVGRLLFST 126 Query 122 QLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 QLA+ V+ RKRAESSALFAMLSGQH + L PAND +KA AHF VGGVGQTISAWLAGD Sbjct 127 QLADPVVVRKRAESSALFAMLSGQHVGNALQVPANDRIKAAAHFVVGGVGQTISAWLAGD 186 Query 182 VRLDPDQLVDQLAALLDELTDPNLSR 207 VRL+P +LVD LAALLDEL +PNL R Sbjct 187 VRLEPGELVDHLAALLDELAEPNLYR 212 >gi|336460167|gb|EGO39072.1| hypothetical protein MAPs_43470 [Mycobacterium avium subsp. paratuberculosis S397] Length=220 Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 159/206 (78%), Positives = 175/206 (85%), Gaps = 0/206 (0%) Query 2 TRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYES 61 T S RPYRGVEAAERLATRR + L+AGLDLLG + DI+ +T+R +CRRAGL+ RYFYES Sbjct 7 TSSARPYRGVEAAERLATRRNRLLAAGLDLLGDQRPDISAVTVRGVCRRAGLAARYFYES 66 Query 62 FTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFST 121 FTDKDEFV VFDWVVAEL ATTQAAV VPA EQTRAG+ANIVRTIT DARVGRLLFST Sbjct 67 FTDKDEFVSCVFDWVVAELAATTQAAVATVPADEQTRAGIANIVRTITDDARVGRLLFST 126 Query 122 QLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 QLA+ V+ RKRAESSALFAMLSGQH + L PAND +KA AHF VGGV QTISAWLAGD Sbjct 127 QLADPVVVRKRAESSALFAMLSGQHVGNALQVPANDRIKAAAHFVVGGVRQTISAWLAGD 186 Query 182 VRLDPDQLVDQLAALLDELTDPNLSR 207 VRL+PD+LVD LAALLDEL +PNL R Sbjct 187 VRLEPDELVDHLAALLDELAEPNLYR 212 >gi|342859248|ref|ZP_08715902.1| FadD27 [Mycobacterium colombiense CECT 3035] gi|342133489|gb|EGT86692.1| FadD27 [Mycobacterium colombiense CECT 3035] Length=217 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/206 (77%), Positives = 176/206 (86%), Gaps = 0/206 (0%) Query 2 TRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYES 61 T S RPYRGVEAA+RLATRR + L+AGLDLLG++Q +I+ +T+R +CR AGL+ RYFYES Sbjct 4 TPSARPYRGVEAADRLATRRSRLLAAGLDLLGAEQQNISAVTVRGVCRAAGLAARYFYES 63 Query 62 FTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFST 121 F DKDEFV VFDWVVAEL ATTQAAV AVPA EQTRAGMANIVRTIT + RVGRLLFST Sbjct 64 FADKDEFVACVFDWVVAELAATTQAAVAAVPAGEQTRAGMANIVRTITENPRVGRLLFST 123 Query 122 QLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 QLA+ VI RKRAESSALFAMLSGQH L PAN+ +KA AHF VGGVGQTISAWLAGD Sbjct 124 QLADPVIVRKRAESSALFAMLSGQHVGHALQVPANERIKAAAHFVVGGVGQTISAWLAGD 183 Query 182 VRLDPDQLVDQLAALLDELTDPNLSR 207 V+L+PDQLVDQLAALLDEL +PNL R Sbjct 184 VQLEPDQLVDQLAALLDELAEPNLYR 209 >gi|118616914|ref|YP_905246.1| TetR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569024|gb|ABL03775.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium ulcerans Agy99] Length=218 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/213 (71%), Positives = 165/213 (78%), Gaps = 3/213 (1%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 RPYRGVEA ERLATRR Q L +GL+LLGS DIAELT+R ICR+AGLS RYFYESF DK Sbjct 2 RPYRGVEATERLATRRSQLLESGLELLGSSDRDIAELTVRGICRQAGLSARYFYESFPDK 61 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 DEF+G VFDWVV +L T QAAV VP EQ RAG+A IVRTI DAR+GRLLFST LAN Sbjct 62 DEFIGGVFDWVVGDLATTIQAAVATVPPPEQARAGIAEIVRTIVGDARIGRLLFSTHLAN 121 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ RKR ESSALFAMLSGQHA D L PAND +K AHF VGGV QTISAW+ GDV L+ Sbjct 122 PVVVRKRTESSALFAMLSGQHAGDALRIPANDRIKVGAHFIVGGVAQTISAWIEGDVELE 181 Query 186 PDQLVDQLAALLDELTDP---NLSRPRVAATAA 215 P QLVDQLA+LLDEL+DP L R ATAA Sbjct 182 PGQLVDQLASLLDELSDPRLYGLRGTRAGATAA 214 >gi|183980564|ref|YP_001848855.1| TetR family transcriptional regulator [Mycobacterium marinum M] gi|183173890|gb|ACC39000.1| transcriptional regulatory protein (possibly TetR-family) [Mycobacterium marinum M] Length=218 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 150/213 (71%), Positives = 164/213 (77%), Gaps = 3/213 (1%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 RPYRGVEA ERLA RR Q L +GL+LLGS DIAELT+R ICR+AGLS RYFYESF DK Sbjct 2 RPYRGVEATERLAARRSQLLESGLELLGSSDRDIAELTVRGICRQAGLSARYFYESFPDK 61 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 DEF+G VFDWVV +L T QAAV VP EQ RAG+A IVRTI DAR+GRLLFST LAN Sbjct 62 DEFIGGVFDWVVGDLATTIQAAVATVPPPEQARAGIAEIVRTIVGDARIGRLLFSTHLAN 121 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ RKR ESSALFAMLSGQHA D L PAND +K AHF VGGV QTISAW+ GDV L+ Sbjct 122 PVVVRKRTESSALFAMLSGQHAGDALRIPANDRIKVGAHFIVGGVAQTISAWIEGDVELE 181 Query 186 PDQLVDQLAALLDELTDP---NLSRPRVAATAA 215 P QLVDQLA+LLDEL+DP L R ATAA Sbjct 182 PGQLVDQLASLLDELSDPRLYGLRGTRAGATAA 214 >gi|240168495|ref|ZP_04747154.1| FadD27 [Mycobacterium kansasii ATCC 12478] Length=239 Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 157/202 (78%), Positives = 171/202 (85%), Gaps = 0/202 (0%) Query 4 SDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFT 63 S RPYRGVEAA+RLA RRRQ L AGLDLLG D DIAELT+R +CRRAGLS RYFYESF Sbjct 14 SARPYRGVEAAQRLAARRRQLLDAGLDLLGCDDGDIAELTVRGVCRRAGLSARYFYESFA 73 Query 64 DKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQL 123 DKDEFV VFDWVVAEL TTQAAV AVP+ EQ RAGMAN+V+ I DAR+GRLLFSTQL Sbjct 74 DKDEFVSGVFDWVVAELATTTQAAVAAVPSHEQARAGMANVVQAIAGDARIGRLLFSTQL 133 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 AN V+ RKRAESSALFAMLSGQHA + L AN+H+KA AHF VGGVGQTISAWLAGD++ Sbjct 134 ANPVVMRKRAESSALFAMLSGQHAGNALRITANEHIKAGAHFVVGGVGQTISAWLAGDLQ 193 Query 184 LDPDQLVDQLAALLDELTDPNL 205 LDPDQLVDQLA+LLDEL DP L Sbjct 194 LDPDQLVDQLASLLDELADPKL 215 >gi|333988904|ref|YP_004521518.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] gi|333484871|gb|AEF34263.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] Length=215 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/202 (66%), Positives = 155/202 (77%), Gaps = 0/202 (0%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y GV+A ER A+RR + L AGLDLLG+D IAELT+R ICR+AGL+ RYFYESF DK Sbjct 13 RLYGGVDAVERRASRRARLLEAGLDLLGADVPQIAELTVRGICRQAGLTARYFYESFADK 72 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +EFV VFD V+A+L A TQ+ V A P EQTRAG+ANIVRTI DAR+GRLLF L+N Sbjct 73 EEFVSAVFDSVIADLAAKTQSVVKAAPPGEQTRAGIANIVRTIVGDARIGRLLFGVHLSN 132 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 AV+ RKR ESSAL AMLSGQHA L P ND +KA HF VGGV QTISAWLAG+VR Sbjct 133 AVVVRKRVESSALLAMLSGQHAGSALRLPENDRIKAAGHFVVGGVAQTISAWLAGEVRFK 192 Query 186 PDQLVDQLAALLDELTDPNLSR 207 P++L++QLAALLD+L DP L R Sbjct 193 PERLIEQLAALLDKLGDPALYR 214 >gi|108797347|ref|YP_637544.1| TetR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866432|ref|YP_936384.1| TetR family transcriptional regulator [Mycobacterium sp. KMS] gi|126432969|ref|YP_001068660.1| TetR family transcriptional regulator [Mycobacterium sp. JLS] gi|108767766|gb|ABG06488.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS] gi|119692521|gb|ABL89594.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS] gi|126232769|gb|ABN96169.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS] Length=205 Score = 258 bits (659), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 133/200 (67%), Positives = 157/200 (79%), Gaps = 0/200 (0%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 RPYRGVEA ERLA RR++ L AGLDLLGS + D+AELT+R ICRRAG++VRYFYE FTDK Sbjct 5 RPYRGVEAPERLAQRRQRFLEAGLDLLGSAEQDLAELTVRAICRRAGVTVRYFYECFTDK 64 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 D+FV VFDWV+ + TTQAA A P R Q+RA M +I+RT++ D R+GRLLFS+QL+N Sbjct 65 DDFVAAVFDWVINGIATTTQAAAAAAPPRAQSRAVMTDIIRTVSEDPRIGRLLFSSQLSN 124 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ RKRAES ALFAMLSG+HA L ND +KA AHF VGGVGQTISAWLAG LD Sbjct 125 TVVVRKRAESGALFAMLSGRHASAALRQSENDRIKAAAHFVVGGVGQTISAWLAGSFALD 184 Query 186 PDQLVDQLAALLDELTDPNL 205 PD LVDQL A++D+L DP L Sbjct 185 PDGLVDQLTAMVDQLADPRL 204 >gi|333989563|ref|YP_004522177.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] gi|333485531|gb|AEF34923.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] Length=199 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 127/197 (65%), Positives = 152/197 (78%), Gaps = 2/197 (1%) Query 11 VEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDEFVG 70 ++AA+RLA RR + L AGLDLLG ++ LT+R +CRRAG++ RYFYESFTDKDEFV Sbjct 1 MQAADRLAERRERLLVAGLDLLGG--REMPALTVRALCRRAGVASRYFYESFTDKDEFVA 58 Query 71 RVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLANAVITR 130 VF+WVV +L A+TQ AV A P EQTRAGMA++V I DARVGR+LFST+L NA++ R Sbjct 59 AVFEWVVNDLAASTQEAVAAAPPAEQTRAGMAHLVAAIAGDARVGRILFSTRLTNALLVR 118 Query 131 KRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLDPDQLV 190 KRA+SSALFAMLSG+H + L P ND +KA AHF VGGV QTI AWLAGD+ L PDQLV Sbjct 119 KRAQSSALFAMLSGRHVENVLRVPGNDRIKAAAHFVVGGVAQTIGAWLAGDIHLQPDQLV 178 Query 191 DQLAALLDELTDPNLSR 207 DQL ALL +L DP L R Sbjct 179 DQLTALLGQLDDPALYR 195 >gi|145220935|ref|YP_001131613.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442095|ref|YP_004074974.1| hypothetical protein Mspyr1_04270 [Mycobacterium sp. Spyr1] gi|145213421|gb|ABP42825.1| putative transcriptional regulator, TetR family [Mycobacterium gilvum PYR-GCK] gi|315260398|gb|ADT97139.1| hypothetical protein Mspyr1_04270 [Mycobacterium sp. Spyr1] Length=209 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 127/202 (63%), Positives = 149/202 (74%), Gaps = 1/202 (0%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 RPYRGV+A R+A RRR+ L AGLDLLG Q + ELT+R IC ++GL+ RYFYESFTDK Sbjct 8 RPYRGVDAPARVAERRRRLLEAGLDLLGG-QLNPPELTVRAICAQSGLAARYFYESFTDK 66 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 D FVG VFD V+A++ TTQAAV A P REQ+R GMANIVR I+ DARVGRLLF+ L N Sbjct 67 DVFVGAVFDRVIADIATTTQAAVAAAPPREQSRQGMANIVRAISEDARVGRLLFNAHLDN 126 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ RKRAES ALFA+LSGQHA L ND + + AHF VGGV QT+SAWLAGD+ Sbjct 127 PVVVRKRAESGALFALLSGQHAGSALRLERNDRITSAAHFVVGGVAQTLSAWLAGDLTFT 186 Query 186 PDQLVDQLAALLDELTDPNLSR 207 QL QL AL+D+L DP L R Sbjct 187 EAQLAAQLGALIDQLADPALYR 208 >gi|118468230|ref|YP_885023.1| TetR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169517|gb|ABK70413.1| transcriptional regulator, TetR family protein [Mycobacterium smegmatis str. MC2 155] Length=203 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/197 (63%), Positives = 147/197 (75%), Gaps = 3/197 (1%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 RPYRG+EAA+RLA RR Q L+AGLDLLG + AE+T+R +C+RAGL+ RYFYESF DK Sbjct 5 RPYRGIEAADRLAQRRGQLLAAGLDLLGDEN---AEVTVRAVCQRAGLAARYFYESFGDK 61 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 D FV V+DWV+AE+ A+TQAAV +VP EQT A M NIVRTI D R+GRLLFS +L+N Sbjct 62 DAFVSEVYDWVIAEIAASTQAAVASVPLAEQTTAAMTNIVRTIADDPRIGRLLFSAKLSN 121 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ RKR E FA L GQH VD L P ND ++A AHFAVGGV QTISAWL G+V Sbjct 122 EVVVRKRVEGIGFFAGLLGQHTVDALRLPENDQLRATAHFAVGGVTQTISAWLGGEVSFT 181 Query 186 PDQLVDQLAALLDELTD 202 PD+LV QL +LLD L + Sbjct 182 PDELVQQLRSLLDALAN 198 >gi|254549214|ref|ZP_05139661.1| transcriptional regulator, tetR-family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=123 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/114 (100%), Positives = 114/114 (100%), Gaps = 0/114 (0%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE Sbjct 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARV 114 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARV Sbjct 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARV 114 >gi|120401434|ref|YP_951263.1| FadD27 [Mycobacterium vanbaalenii PYR-1] gi|119954252|gb|ABM11257.1| FadD27 [Mycobacterium vanbaalenii PYR-1] Length=165 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 108/164 (66%), Positives = 127/164 (78%), Gaps = 0/164 (0%) Query 44 IRTICRRAGLSVRYFYESFTDKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMAN 103 +R IC ++GL+ RYFYESF DKD FVG VFDWVVA++ ATTQAAV A P REQ+R GMAN Sbjct 1 MRAICAQSGLAARYFYESFADKDVFVGAVFDWVVADIAATTQAAVAAAPVREQSRQGMAN 60 Query 104 IVRTITADARVGRLLFSTQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVA 163 IV TI+ D RVGRLLF+T+L N V+ RKRAES ALFA+LSGQHA L N+ ++A A Sbjct 61 IVNTISDDIRVGRLLFNTRLDNPVVVRKRAESGALFALLSGQHAGTALQVEPNERIRAAA 120 Query 164 HFAVGGVGQTISAWLAGDVRLDPDQLVDQLAALLDELTDPNLSR 207 HFAVGGV QT+SAWLAGD+ P+QL QL ALLD+L DP L R Sbjct 121 HFAVGGVAQTLSAWLAGDLAFTPEQLAGQLGALLDQLADPTLYR 164 >gi|326906033|gb|EGE52966.1| LOW QUALITY PROTEIN: hypothetical protein TBPG_04008 [Mycobacterium tuberculosis W-148] Length=123 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE Sbjct 4 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 63 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAV 91 SFTDKDEFVGRVFDWVVAELVATTQAAVTAV Sbjct 64 SFTDKDEFVGRVFDWVVAELVATTQAAVTAV 94 >gi|169631407|ref|YP_001705056.1| TetR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243374|emb|CAM64402.1| Putative TetR-family transcriptional regulator [Mycobacterium abscessus] Length=199 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/194 (46%), Positives = 122/194 (63%), Gaps = 2/194 (1%) Query 4 SDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFT 63 S R Y GVEA +R A RR + L AGLDLL S LT+R +C+ AG+ RYFYE+FT Sbjct 3 SSRVYGGVEAPDRQAERRNRLLDAGLDLLTSG--PAPNLTVRGVCKHAGVVARYFYENFT 60 Query 64 DKDEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQL 123 D D+ VFD + + TTQ AV A P E+T AG+AN+VR I D R+G L+F Sbjct 61 DLDQLSAEVFDRAIGHVATTTQQAVDAAPLPEKTSAGIANLVRVIEGDPRIGTLMFGNNP 120 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 AN+VI +R + +FA LSGQH T A ++ ++AV+++ VGGVG T++AW++G ++ Sbjct 121 ANSVIAERRQAAWDMFAALSGQHMNKTYQATNDETLRAVSYYTVGGVGHTLAAWVSGQLK 180 Query 184 LDPDQLVDQLAALL 197 L +LV L LL Sbjct 181 LPGTELVRVLTELL 194 >gi|226308996|ref|YP_002768956.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188113|dbj|BAH36217.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=206 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/198 (44%), Positives = 123/198 (63%), Gaps = 4/198 (2%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 M R Y GV+ A R+A RR + AGL+L+GS + ELT+R +C++AG++ RYFYE Sbjct 4 MNDQPRSYGGVDGALRVAQRRETLIEAGLELMGSAEP---ELTVRGVCKKAGVAARYFYE 60 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPA-REQTRAGMANIVRTITADARVGRLLF 119 SFTD+D + V+D V+ ++ +TQAAV A R + AG+ANIVRTI D R GRLLF Sbjct 61 SFTDRDALMSAVYDTVITDIAVSTQAAVDAAETERGKALAGIANIVRTIAQDPRRGRLLF 120 Query 120 STQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLA 179 S+ L + V+ KR S+ +F L +A + H+ A F VGG+ QT+SAWL Sbjct 121 SSALTSPVLAEKRRASTTIFIGLLAANAKTFYRLNDSGHLTLTATFLVGGLAQTLSAWLD 180 Query 180 GDVRLDPDQLVDQLAALL 197 G + + ++LV + AA+L Sbjct 181 GYIDVTEEELVAECAAIL 198 >gi|229491713|ref|ZP_04385534.1| transcriptional regulator, TetR family [Rhodococcus erythropolis SK121] gi|229321394|gb|EEN87194.1| transcriptional regulator, TetR family [Rhodococcus erythropolis SK121] Length=223 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/198 (44%), Positives = 123/198 (63%), Gaps = 4/198 (2%) Query 1 MTRSDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYE 60 M R Y GV+ A R+A RR + AGL+L+GS + ELT+R +C++AG++ RYFYE Sbjct 21 MNDQPRSYGGVDGALRVAQRREALIEAGLELMGSAEP---ELTVRGVCKQAGVAARYFYE 77 Query 61 SFTDKDEFVGRVFDWVVAELVATTQAAVTAVPA-REQTRAGMANIVRTITADARVGRLLF 119 SFTD+D + V+D V+ ++ +TQAAV A R + AG+ANIVRTI D R GRLLF Sbjct 78 SFTDRDALMSAVYDTVITDIAVSTQAAVDAAETERGKALAGIANIVRTIANDPRRGRLLF 137 Query 120 STQLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLA 179 S+ L + V+ KR S+ +F L +A + H+ A F VGG+ QT+SAWL Sbjct 138 SSALTSPVLAEKRQASTTIFIGLLAANAKTFYRLNDSGHLTLTATFLVGGLAQTLSAWLD 197 Query 180 GDVRLDPDQLVDQLAALL 197 G + + ++LV + AA+L Sbjct 198 GYIDVTEEELVAECAAIL 215 >gi|226364851|ref|YP_002782633.1| TetR family transcriptional regulator [Rhodococcus opacus B4] gi|226243340|dbj|BAH53688.1| putative TetR family transcriptional regulator [Rhodococcus opacus B4] Length=207 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/196 (47%), Positives = 120/196 (62%), Gaps = 3/196 (1%) Query 4 SDRPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFT 63 SDR Y G E +R + RR Q + AGLDLLGS D A LT+R +C++AGL+ RYFYESF Sbjct 5 SDRVYGGQEGDQRRSERRGQLIEAGLDLLGSADGDHA-LTVRGVCKQAGLATRYFYESFP 63 Query 64 DKDEFVGRVFDWVVAELVATTQAAVT-AVPA-REQTRAGMANIVRTITADARVGRLLFST 121 D+D V+D VV + +T AVT A P RE RAG+ NIVR + D R GRL+FS Sbjct 64 DRDALTVAVYDHVVERIATSTLDAVTNAGPGEREIVRAGVRNIVREVAEDPRHGRLMFSV 123 Query 122 QLANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 ++AV+ ++R +SS LFA L + V + + AHF VGG+ QT++AWL G Sbjct 124 AQSSAVLAQRRLDSSRLFAGLVTKQTVGYYEVAESPRLDLAAHFMVGGLAQTLTAWLNGT 183 Query 182 VRLDPDQLVDQLAALL 197 V L ++LVD LL Sbjct 184 VTLPEEELVDTCTELL 199 >gi|169629580|ref|YP_001703229.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169241547|emb|CAM62575.1| Hypothetical transcriptional regulator [Mycobacterium abscessus] Length=208 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/192 (45%), Positives = 126/192 (66%), Gaps = 1/192 (0%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G+ A ERLA RR++ L GLD+LG+ +LT+RT+C+R+GL+ RYFYESF DK Sbjct 7 RSYSGLPADERLARRRQRLLEVGLDILGTPDGS-GDLTLRTVCQRSGLAQRYFYESFADK 65 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 DE+ +FDW + L AT +A V A R Q RAG+ ++VR ++AD R+G+LL+S N Sbjct 66 DEYAAAIFDWAIEGLAATVEAEVAAAHPRLQVRAGITSVVRAVSADRRIGQLLYSRHQVN 125 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ R+R +++A+F L QH D ++ +AHF VGGVGQ ++AWL +V + Sbjct 126 PVLVRRRFDATAMFVSLFAQHLHDWFRRDDQGNLPVLAHFIVGGVGQAVTAWLHQEVTIS 185 Query 186 PDQLVDQLAALL 197 D+L++QL +L Sbjct 186 EDELIEQLVDML 197 >gi|111022307|ref|YP_705279.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821837|gb|ABG97121.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length=222 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/194 (46%), Positives = 119/194 (62%), Gaps = 3/194 (1%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G E +R + RR Q + AGLDLLGS D A LT+R +C++AGL+ RYFYESFTD+ Sbjct 22 RVYGGQERDQRKSERRGQLIEAGLDLLGSADGDHA-LTVRGVCKQAGLATRYFYESFTDR 80 Query 66 DEFVGRVFDWVVAELVATTQAAVT-AVPA-REQTRAGMANIVRTITADARVGRLLFSTQL 123 D V+D VV + +T AV+ A P R+ RAG+ NIVR + D R GRL+FS Sbjct 81 DALAVAVYDHVVDRIATSTLDAVSNAGPGERDIVRAGVRNIVREVAEDPRQGRLMFSVAQ 140 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 ++AV+ ++R +SS LFA L + V + + AHF VGG+ QT++AWL G V Sbjct 141 SSAVLAQRRLDSSRLFAGLVTKQTVGYYEVAESPRLDLAAHFMVGGLAQTLTAWLNGTVT 200 Query 184 LDPDQLVDQLAALL 197 L ++LVD LL Sbjct 201 LPEEELVDTCTELL 214 >gi|343925378|ref|ZP_08764898.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343764644|dbj|GAA11824.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=234 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/208 (43%), Positives = 117/208 (57%), Gaps = 11/208 (5%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G R+A RR + A LDLLG+D D +T+R +CRRAGL+ RYFYESF Sbjct 24 RAYGGEGGDTRVARRRASLIDAALDLLGAD--DAEAVTVRGVCRRAGLTARYFYESFESV 81 Query 66 DEFVGRVFDWVVAELVATTQAAVT-AVPAREQTRAGMANIVRTITADARVGRLLFSTQLA 124 D+ VG V+D V+ E+ + AA + R + +A IV I D R GRLLFS L Sbjct 82 DQLVGVVYDEVIEEITHSGLAAFSEGATMRSKVSGAVAAIVDLIDRDRRKGRLLFSQALL 141 Query 125 NAVITRKRAESSALFAMLSGQHA---VDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 + VI KR ES+ALFA L+ Q +D PA VAH+ VGG+ + ++AWL GD Sbjct 142 SPVIAAKRMESTALFAGLTLQSTSSILDVHVGPA--QATGVAHYQVGGLSRLLAAWLEGD 199 Query 182 VRLDPDQLVDQLAALL---DELTDPNLS 206 V L +VD ALL E+ + +LS Sbjct 200 VELSQSDVVDLSVALLVSPAEILEKSLS 227 >gi|262204339|ref|YP_003275547.1| hypothetical protein Gbro_4521 [Gordonia bronchialis DSM 43247] gi|262087686|gb|ACY23654.1| hypothetical protein Gbro_4521 [Gordonia bronchialis DSM 43247] Length=244 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/196 (42%), Positives = 113/196 (58%), Gaps = 6/196 (3%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G R+A RR + AGLDLLG+ ++ A +T+R +CR+AGL+ RYFYESF Sbjct 23 RAYGGEGGDTRVARRRSALIDAGLDLLGAGEN--ATVTVRGVCRQAGLTARYFYESFESV 80 Query 66 DEFVGRVFDWVVAELV-ATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLA 124 DE VG ++D V++EL A +A + R G+ +V I AD R GRLLFS L Sbjct 81 DELVGVLYDEVISELADAGLRAFDEGSDMESKVRGGVTAMVDIIAADQRKGRLLFSQSLQ 140 Query 125 NAVITRKRAESSALFAMLSGQHA---VDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 + VI KR ES+ LFA L+ Q A +D + +AH+ VGG+ + ++AW+ GD Sbjct 141 SPVIAAKRMESTTLFAGLTLQSASGVIDLDPELGSGAAFGIAHYQVGGLSRLLAAWVEGD 200 Query 182 VRLDPDQLVDQLAALL 197 V + D +VD LL Sbjct 201 VDMTRDAIVDLSVRLL 216 >gi|326383583|ref|ZP_08205269.1| hypothetical protein SCNU_11630 [Gordonia neofelifaecis NRRL B-59395] gi|326197667|gb|EGD54855.1| hypothetical protein SCNU_11630 [Gordonia neofelifaecis NRRL B-59395] Length=217 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/193 (36%), Positives = 98/193 (51%), Gaps = 3/193 (1%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G R+A RR + A LD+L + + +T+R IC RA L+ RYFYESF + Sbjct 12 RDYGGESGGARIARRRTALIDAALDMLA--EPEPGAVTVRGICARASLTPRYFYESFENA 69 Query 66 DEFVGRVFDWVVAELVATTQAAVTA-VPAREQTRAGMANIVRTITADARVGRLLFSTQLA 124 D VG FD ++ E+ A A AR + + IV I D R GR++FS L Sbjct 70 DVLVGATFDMIIGEIAERALAGFNAGSSARGKVVGAVEAIVDVIQGDPRKGRVIFSDTLR 129 Query 125 NAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRL 184 + V+ KR E +F L+ Q A + + A AHF VGG+G+ +++W G + L Sbjct 130 SPVLAVKRTEMLQVFTDLTFQSAPEVANVSGGQQTLAAAHFQVGGLGRLLASWTEGLIDL 189 Query 185 DPDQLVDQLAALL 197 D LVD +L Sbjct 190 DRTALVDICVQML 202 >gi|108797931|ref|YP_638128.1| TetR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867027|ref|YP_936979.1| TetR family transcriptional regulator [Mycobacterium sp. KMS] gi|108768350|gb|ABG07072.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS] gi|119693116|gb|ABL90189.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS] Length=199 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/191 (39%), Positives = 105/191 (55%), Gaps = 14/191 (7%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L L G+ A L +R++CR GL+ RYFYESF D D+ Sbjct 7 WAGVPLTDRRAERRALLIDAALRLFGTGGE--AALAVRSVCRECGLNTRYFYESFADTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVTAVPA--REQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G ++D V A+L A AA+TA + RE+TRAGMA ++ +AD R GR+LF+ AN Sbjct 65 LLGALYDEVSAQLAADVDAAMTAAGSSLRERTRAGMAAVLGFSSADPRRGRVLFTDARAN 124 Query 126 AVITRKRAESSALF---AMLSGQHAVDTLHAPANDHVKAV--AHFAVGGVGQTISAWLAG 180 V+ +RA + L ++ G LH P +D V A A G + + WLAG Sbjct 125 PVLAARRAATQDLLREAVLVEGWR----LH-PGSDPVAAQVGAAMYTGAMAELAQQWLAG 179 Query 181 DVRLDPDQLVD 191 + D D +VD Sbjct 180 RLGDDLDTVVD 190 >gi|126433587|ref|YP_001069278.1| TetR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233387|gb|ABN96787.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS] Length=199 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/191 (39%), Positives = 105/191 (55%), Gaps = 14/191 (7%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L L G+ A L +R++CR GL+ RYFYESF D D+ Sbjct 7 WAGVPLTDRRAERRALLIDAALRLFGTGGE--AALAVRSVCRECGLNTRYFYESFADTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVTAVPA--REQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G ++D V A+L A AA+TA + RE+TRAGMA ++ +AD R GR+LF+ AN Sbjct 65 LLGALYDEVSAQLAADVDAAMTAAGSSLRERTRAGMAAVLGFSSADPRRGRVLFTDARAN 124 Query 126 AVITRKRAESSALF---AMLSGQHAVDTLHAPANDHVKAV--AHFAVGGVGQTISAWLAG 180 V+ +RA + L ++ G LH P +D V A A G + + WLAG Sbjct 125 PVLAARRAATQDLLREAVLVEGWR----LH-PGSDPVAAQVGAAMYTGAMAELAQQWLAG 179 Query 181 DVRLDPDQLVD 191 + D D +VD Sbjct 180 RLGDDLDAVVD 190 >gi|324998578|ref|ZP_08119690.1| TetR family transcriptional regulator [Pseudonocardia sp. P1] Length=188 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/194 (40%), Positives = 104/194 (54%), Gaps = 18/194 (9%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y GV+ R A RR Q + AGL+LLG+ D LT+R CR AGL+ RYFYE+FTD+ Sbjct 5 RTYGGVDGDRRRADRRAQLVGAGLELLGTPGGD---LTVRAACRGAGLATRYFYENFTDR 61 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPAREQ--TRAGMANIVRTITADARVGRLLFSTQL 123 D V+D VV E+ AV P + RAG+ IV + D R GR+LF Sbjct 62 DALAAAVYDAVVDEVARAAAGAVDGAPGPHEARVRAGVEAIVGVVVDDPRKGRVLFGPAQ 121 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 A + AE++ LF L + D +D + A FAVGG+ + + +W AGD+ Sbjct 122 AA-----RHAETARLFVRLFVERRPDP-----DDLLGA---FAVGGLARVLGSWTAGDLP 168 Query 184 LDPDQLVDQLAALL 197 +D LVD+ ALL Sbjct 169 VDRAHLVDRCTALL 182 >gi|343924781|ref|ZP_08764320.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343765288|dbj|GAA11246.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=200 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/192 (35%), Positives = 102/192 (54%), Gaps = 5/192 (2%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR ++A LD+ G + EL++R++CR G + RYFYESF D DE Sbjct 7 WAGVPLEDRRAERRAILIAAALDIFGGSGPET-ELSVRSVCRHCGFNTRYFYESFADTDE 65 Query 68 FVGRVFDWVVAELVATTQAAVTAV--PAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D AEL A +AA+T R +TRAGM ++ + D R GR+LF+ N Sbjct 66 LLGAVYDATAAELGAVVEAAMTTAGHSVRARTRAGMLAVLGHASEDPRRGRILFTEGRTN 125 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLD 185 V+ ++RA + + LS A P V+A G + + +LAG + D Sbjct 126 PVLAQRRAATQNMLFELSFAEADARETDPLTGRVRAAVF--TGAMAELAQQFLAGSLGDD 183 Query 186 PDQLVDQLAALL 197 +++VD+ A L Sbjct 184 LERVVDEALATL 195 >gi|262203265|ref|YP_003274473.1| TetR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262086612|gb|ACY22580.1| regulatory protein TetR [Gordonia bronchialis DSM 43247] Length=196 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/196 (36%), Positives = 106/196 (55%), Gaps = 11/196 (5%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV A+R A RR + A DL G+ ++ L++R++CR G + RYFYESF D DE Sbjct 7 WAGVRMADRRAERRTALIRAAFDLFGT--SGVSALSVRSVCRACGFNSRYFYESFRDTDE 64 Query 68 FVGRVFDWVVAELVATTQAAVTAVPA--REQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D AEL + ++ R +TRAG+ ++ +AD R GR+LF+ AN Sbjct 65 LLGAVYDETAAELAVEIERQTSSGDGTVRSRTRAGIRGVLEFGSADPRRGRILFTEARAN 124 Query 126 AVITRKRAESSALFAMLSGQHAVDTLHA--PANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 V+ ++RA++ L L+ A + LH P V+A G + + WLAG++ Sbjct 125 PVLAQRRAQTQDLLRELA--LAENRLHEADPMTSSVRAA--LFTGAMAELAQQWLAGNLG 180 Query 184 LDPDQLVD-QLAALLD 198 D D +VD L LLD Sbjct 181 DDLDAVVDVALRLLLD 196 >gi|333921361|ref|YP_004494942.1| TetR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333483582|gb|AEF42142.1| Transcriptional regulator, TetR family [Amycolicicoccus subflavus DQS3-9A1] Length=235 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/196 (37%), Positives = 103/196 (53%), Gaps = 6/196 (3%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y GV A+R RR Q + AGL+L+GS +A T+R + ++G+S +YFYE FT Sbjct 12 RTYAGVPGADRSQQRRTQLIEAGLELMGSQ--GVAATTVRGVISQSGVSPKYFYEHFTSV 69 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVP--AREQTRAGMANIVRTITADARVGRLLFSTQL 123 DE VFD V+AE+ AA+ + P AR + RA +A I + D R GR+L + + Sbjct 70 DELQVAVFDAVIAEVEQLALAALASAPRNARSRIRAVLAAITDLLLTDPRKGRILLTEAI 129 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPAN--DHVKAVAHFAVGGVGQTISAWLAGD 181 V+ +R F+ L H+ A+ V +HFAVGG +T++ L Sbjct 130 TTPVLATRRLAEVTRFSGLLAHHSRTVWQGLAHYESTVLTTSHFAVGGYAETLAWVLEAG 189 Query 182 VRLDPDQLVDQLAALL 197 +D QLVD+L LL Sbjct 190 ADVDRAQLVDELTELL 205 >gi|118470454|ref|YP_885741.1| TetR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171741|gb|ABK72637.1| transcriptional regulator, TetR family protein [Mycobacterium smegmatis str. MC2 155] Length=199 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/189 (37%), Positives = 103/189 (55%), Gaps = 8/189 (4%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L G D + A L++R++CR GL+ RYFYESF D D+ Sbjct 7 WAGVPLTDRRAERRALLVDAAFRLFG-DGGETA-LSVRSVCRECGLNTRYFYESFADTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVTAV--PAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D V A L A +AA+ R +TRAG+A ++ +AD R GR+LF+ AN Sbjct 65 LIGAVYDEVSALLAADVEAAMEGAGNSLRARTRAGIAAVLGFSSADPRRGRVLFTDARAN 124 Query 126 AVITRKRAESSALF--AMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 V+ ++RA + L A+LS ++ P V A + G + + WLAG++ Sbjct 125 PVLAQRRAVTQDLLREAVLSEGGRLNPGSDPVAAQVGAAMY--TGAMAELAQQWLAGNLG 182 Query 184 LDPDQLVDQ 192 D D +VD Sbjct 183 DDLDAVVDH 191 >gi|120402256|ref|YP_952085.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955074|gb|ABM12079.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii PYR-1] Length=206 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/193 (38%), Positives = 105/193 (55%), Gaps = 20/193 (10%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L G L++R++ R AGL+ RYFYESFTD D+ Sbjct 15 WAGVPLTDRRAERRALLVDAAFRLFGDGGEQ--ALSVRSVSREAGLNTRYFYESFTDTDD 72 Query 68 FVGRVFDWVVAELVATTQAAVT----AVPAREQTRAGMANIVRTITADARVGRLLFSTQL 123 +G V+D V AEL +AA++ ++PAR TRAGM ++ +AD R GR+LF+ Sbjct 73 LLGAVYDRVSAELAEVVEAAMSGAGASLPAR--TRAGMTAVLHFSSADPRRGRVLFTDAR 130 Query 124 ANAVITRKRAESSALFAMLSGQHAVDT----LHAPANDHVKAV--AHFAVGGVGQTISAW 177 AN V+T++RA + L + AV T LH P +D A+ A G + + W Sbjct 131 ANPVLTQRRAATQDLL-----REAVLTEGWRLH-PDSDPTAAMVGAAMYTGAMAELAQQW 184 Query 178 LAGDVRLDPDQLV 190 LAG + D D +V Sbjct 185 LAGHLGDDLDAVV 197 >gi|229492962|ref|ZP_04386757.1| transcriptional regulator, TetR family [Rhodococcus erythropolis SK121] gi|229319992|gb|EEN85818.1| transcriptional regulator, TetR family [Rhodococcus erythropolis SK121] Length=206 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/192 (32%), Positives = 98/192 (52%), Gaps = 10/192 (5%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G+ +R A RR L+AGLD+ + A +T IC A L+ RYFYESFT + Sbjct 7 RRYAGLSGEQRAALRRESLLAAGLDVFAAAGRQGATMT--AICAHAKLTERYFYESFTSR 64 Query 66 DEFVGRVFDWVVAELVATTQAAVTAVPA--REQTRAGMANIVRTITADARVGRLLFSTQL 123 DE + +VFD +V E+ AA+ E+ R+ +A+ V +T D R GR+ + Sbjct 65 DELLQQVFDGIVDEVRVAGMAALRTTDGTREERVRSAIASFVNILTDDPRKGRVAMVESV 124 Query 124 ANAVI-TRKRAESSALFAMLSGQHAV---DTLHAPANDHVKAVAHFAVGGVGQTISAWLA 179 A + T +R M++ + A+ D P + + VGG+ + ++AWL Sbjct 125 AYEPLRTHRRGALRGFAQMVADEAALLYGDRAWPPHQGEINGL--LFVGGLAELVTAWLN 182 Query 180 GDVRLDPDQLVD 191 G++ + P ++VD Sbjct 183 GEIDITPTEIVD 194 >gi|118464865|ref|YP_883142.1| TetR family transcriptional regulator [Mycobacterium avium 104] gi|254776402|ref|ZP_05217918.1| transcriptional regulator, TetR family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166152|gb|ABK67049.1| transcriptional regulator, TetR family protein [Mycobacterium avium 104] Length=198 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/194 (35%), Positives = 100/194 (52%), Gaps = 8/194 (4%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L GS+ A +++R++CR GL+ RYFYESF D D+ Sbjct 7 WAGVPLKDRRAERRALLVEAAYRLFGSEGE--AAVSVRSVCRECGLNTRYFYESFRDTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVTAV--PAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D V +L AA+ R +TRAG+A ++ +AD R GR+LF+ N Sbjct 65 LLGAVYDRVSEQLEEVIAAAIEQAGDSLRARTRAGIAAVLGFSSADPRRGRVLFTDARTN 124 Query 126 AVI-TRKRAESSALF-AMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 V+ R+RA L +LS ++ P V A + G + + WLAG + Sbjct 125 PVLAARRRATQDMLRQGVLSEGWRLNPRSDPVAAEVAAAMY--TGAMAELAQQWLAGHLG 182 Query 184 LDPDQLVDQLAALL 197 D D +VD + L+ Sbjct 183 GDLDAVVDYASKLV 196 >gi|41409254|ref|NP_962090.1| hypothetical protein MAP3156c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398074|gb|AAS05704.1| hypothetical protein MAP_3156c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459190|gb|EGO38135.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=198 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/194 (35%), Positives = 99/194 (52%), Gaps = 8/194 (4%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L GS A +++R++CR GL+ RYFYESF D D+ Sbjct 7 WAGVPLKDRRAERRALLVEAAYRLFGSGGE--AAVSVRSVCRECGLNTRYFYESFRDTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVTAV--PAREQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D V +L AA+ R +TRAG+A ++ +AD R GR+LF+ N Sbjct 65 LLGAVYDRVSEQLEEVIAAAIEQAGDSLRARTRAGIAAVLGFSSADPRRGRVLFTDARTN 124 Query 126 AVI-TRKRAESSALF-AMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVR 183 V+ R+RA L +LS ++ P V A + G + + WLAG + Sbjct 125 PVLAARRRATQDMLRQGVLSEGWRLNPRSDPVAAEVAAAMY--TGAMAELAQQWLAGHLG 182 Query 184 LDPDQLVDQLAALL 197 D D +VD + L+ Sbjct 183 GDLDAVVDYASKLV 196 >gi|315446036|ref|YP_004078915.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315264339|gb|ADU01081.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1] Length=201 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/193 (37%), Positives = 102/193 (53%), Gaps = 16/193 (8%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L L G + +++R++ R GL+ RYFYESF D+ Sbjct 10 WAGVPLTDRRAERRALLVDAALRLFGDGGE--SAVSVRSVSRECGLNTRYFYESFGGTDD 67 Query 68 FVGRVFDWVVAEL-VATTQAAVTAVPA-REQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D V AEL VA A A + R +TRAGMA ++ +AD R GR+LF+ +N Sbjct 68 LLGAVYDRVSAELSVAVADAMDHAEDSLRARTRAGMAAVLHFSSADPRRGRVLFTDARSN 127 Query 126 AVITRKRAESSALFAMLSGQHAVDT----LHAPANDHVKAV--AHFAVGGVGQTISAWLA 179 V+T +RA + L + AV T LH P D + A A G + + WL+ Sbjct 128 PVLTARRAATQDLL-----REAVLTEGWRLH-PDTDPIAAATGAAMYTGAMAELAQQWLS 181 Query 180 GDVRLDPDQLVDQ 192 G++ D D +VD Sbjct 182 GNLGDDLDVVVDH 194 >gi|145225685|ref|YP_001136363.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145218171|gb|ABP47575.1| transcriptional regulator, TetR family [Mycobacterium gilvum PYR-GCK] Length=201 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/193 (37%), Positives = 101/193 (53%), Gaps = 16/193 (8%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L G + +++R++ R GL+ RYFYESF D+ Sbjct 10 WAGVPLTDRRAERRALLVDAAFRLFGDGGE--SAVSVRSVSRECGLNTRYFYESFGGTDD 67 Query 68 FVGRVFDWVVAEL-VATTQAAVTAVPA-REQTRAGMANIVRTITADARVGRLLFSTQLAN 125 +G V+D V AEL VA A A + R +TRAGMA ++ +AD R GR+LF+ +N Sbjct 68 LLGAVYDRVSAELSVAVADAMDHAEDSLRARTRAGMAAVLHFSSADPRRGRVLFTDARSN 127 Query 126 AVITRKRAESSALFAMLSGQHAVDT----LHAPANDHVKAV--AHFAVGGVGQTISAWLA 179 V+T +RA + L + AV T LH P D V A A G + + WL+ Sbjct 128 PVLTARRAATQDLL-----REAVLTEGWRLH-PDTDPVAAATGAAMYTGAMAELAQQWLS 181 Query 180 GDVRLDPDQLVDQ 192 G++ D D +VD Sbjct 182 GNLGDDLDVVVDH 194 >gi|342860978|ref|ZP_08717627.1| hypothetical protein MCOL_18942 [Mycobacterium colombiense CECT 3035] gi|342131422|gb|EGT84692.1| hypothetical protein MCOL_18942 [Mycobacterium colombiense CECT 3035] Length=198 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/190 (35%), Positives = 100/190 (53%), Gaps = 12/190 (6%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + G+ +R A RR + A L GS A +++R++CR GL+ RYFYESF D D+ Sbjct 7 WAGIPLKDRRAERRALLVEAAYRLFGSGGE--AAVSVRSVCRECGLNTRYFYESFGDTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVT----AVPAREQTRAGMANIVRTITADARVGRLLFSTQL 123 +G V+D V +L +AA+ ++ AR TRAG+A ++ +AD R GR+LF+ Sbjct 65 LLGAVYDRVSGQLSEVIEAAIEQAGDSLGAR--TRAGIAAVLGFSSADPRRGRVLFTDAR 122 Query 124 ANAVI-TRKRAESSALFA-MLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGD 181 N V+ R+RA L A +L+ ++ P V A + G + + WLAG Sbjct 123 TNPVLAARRRATQDMLRAGVLTEGWRLNPDSDPVAAEVAAALY--TGAMAELAQQWLAGH 180 Query 182 VRLDPDQLVD 191 + D D +VD Sbjct 181 LGTDLDVVVD 190 >gi|296166413|ref|ZP_06848845.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898174|gb|EFG77748.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=187 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/195 (32%), Positives = 90/195 (47%), Gaps = 12/195 (6%) Query 14 AERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDEFVGRVF 73 +RLA RR ++AG+ LLG D LT+R +CR+A L+ RYFYESF D+DEFV V+ Sbjct 2 GDRLALRRDNLIAAGVQLLGGDGR--PALTVRAVCRKAALTERYFYESFADRDEFVRAVY 59 Query 74 DWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLANAVITRKRA 133 D V + T +A T R + V + D GR+L ++TR A Sbjct 60 DDVCTRAMNTLTSATTP-------REAVEKFVELMVDDPVRGRVLLLAPAVEPILTRSGA 112 Query 134 ESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLDPDQLVDQL 193 E F L Q + + P K +A +GG+ +A+L G + Q +D Sbjct 113 EWMPNFIALL-QRKLSRIGDPVLQ--KMIATSLIGGLSSLFTAYLNGQLGASRKQFIDYC 169 Query 194 AALLDELTDPNLSRP 208 +L P + P Sbjct 170 VNMLYITAAPYVPTP 184 >gi|254821158|ref|ZP_05226159.1| hypothetical protein MintA_14572 [Mycobacterium intracellulare ATCC 13950] Length=198 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/190 (34%), Positives = 96/190 (51%), Gaps = 12/190 (6%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR + A L GS A +++R++CR GL+ RYFYESF D D+ Sbjct 7 WAGVPLKDRRAERRALLVEAAYRLFGSGGE--AAVSVRSVCRECGLNTRYFYESFGDTDD 64 Query 68 FVGRVFDWVVAELVATTQAAVT----AVPAREQTRAGMANIVRTITADARVGRLLFSTQL 123 +G V+D V +L AA+ ++ AR TRAG+A ++ +AD R GR+LF+ Sbjct 65 LLGAVYDRVSEQLAEVIAAAIEEAGDSLGAR--TRAGIAAVLGFSSADPRRGRVLFTDAR 122 Query 124 ANAVITRKRAESSALFAMLSGQHAVDTLHAPANDHVKA--VAHFAVGGVGQTISAWLAGD 181 N V+ +R + + + G P +D V A A G + + WLAG Sbjct 123 TNPVLAARRRATQDM--LRQGVLTEGWRLNPGSDPVAAEVAAAMYTGAMAELAQQWLAGH 180 Query 182 VRLDPDQLVD 191 + D D +VD Sbjct 181 LGNDLDAVVD 190 >gi|41406757|ref|NP_959593.1| hypothetical protein MAP0659c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395107|gb|AAS02976.1| hypothetical protein MAP_0659c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458345|gb|EGO37324.1| hypothetical protein MAPs_14480 [Mycobacterium avium subsp. paratuberculosis S397] Length=204 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/204 (33%), Positives = 93/204 (46%), Gaps = 22/204 (10%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV RLA RR ++AG+ LLG LT+R +CR+A L+ RYFYESFTD+DE Sbjct 10 WTGVPLESRLALRRDNLINAGVQLLGGSGG--PALTVRAVCRKAALTERYFYESFTDRDE 67 Query 68 FVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLANAV 127 FV V+D V + T +A T R + V + D GR+L V Sbjct 68 FVRAVYDDVCTRAMNTLTSATTP-------REAVERFVELMVDDPVRGRVLLLAPAVEPV 120 Query 128 ITRKRAESSALFAMLSGQHAVDTLH---APANDHV--KAVAHFAVGGVGQTISAWLAGDV 182 +TR AE F +D L + D V K +A VGG+ +A+L G + Sbjct 121 LTRSGAEWMPNF--------IDLLQRKLSRIGDAVLQKMIATSLVGGLSSLFTAYLHGQL 172 Query 183 RLDPDQLVDQLAALLDELTDPNLS 206 Q +D +L P +S Sbjct 173 GATRKQFIDYCTNMLYITAAPYVS 196 >gi|23573425|gb|AAN38712.1| putative transcriptional regulator [Mycobacterium abscessus] Length=224 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/203 (30%), Positives = 103/203 (51%), Gaps = 14/203 (6%) Query 6 RPYRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDK 65 R Y G+ A +R A RR + + A + ++G+ H T+ +C ++G++ RYFY+ F D+ Sbjct 5 RVYGGLSATQRDAQRRVRLIDATVSIMGT--HGATACTVTAVCAKSGVTSRYFYQQFRDR 62 Query 66 DEFVGRVFDWVVAELVATTQAAVTA------VPAREQTRAGMANIVRTITADARVGRLLF 119 D + VF A++ AT QA +T+ V +E A + +V+ I D R+ R+LF Sbjct 63 DALLRAVF----AKISATFQAVITSAIPDDTVAPQELAYAPIKALVQLIENDPRMARILF 118 Query 120 STQLANAVITRKRAESSALFAMLSGQHAVDTLHAPAN--DHVKAVAHFAVGGVGQTISAW 177 A +++ + R+E FA L + A L P++ A + VGG+ + + W Sbjct 119 VESGAESLLRQLRSELMTDFAELVLREARLHLDIPSDVLQVADLAATYGVGGLFEILRRW 178 Query 178 LAGDVRLDPDQLVDQLAALLDEL 200 + G + L + L++ A L L Sbjct 179 IDGQLNLSTEMLIEHCAGFLGIL 201 >gi|333992165|ref|YP_004524779.1| hypothetical protein JDM601_3525 [Mycobacterium sp. JDM601] gi|333488133|gb|AEF37525.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=204 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/191 (35%), Positives = 92/191 (49%), Gaps = 14/191 (7%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV AER A RR + + AG+ LLG + LTIR++CR A L+ RYFYESFTD+DE Sbjct 10 WSGVPLAERPALRRDEFIEAGVGLLGDENG--PTLTIRSLCRAAALTERYFYESFTDRDE 67 Query 68 FVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLANAV 127 FV V+D V + T +A T RA + V + D GR+L V Sbjct 68 FVRAVYDDVCTRAMTTLLSAQTP-------RAAVEAFVTLMVDDPVRGRVLLLAPATEPV 120 Query 128 ITRKRAESSALF-AMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLDP 186 +T A+ F ML Q + + P H+ VA +G + SA+L G + Sbjct 121 LTHSGAQWMPNFIGML--QRKLTRIGDPPLQHM--VATGLIGALTALFSAYLEGRLAATR 176 Query 187 DQLVDQLAALL 197 Q +D +L Sbjct 177 SQFIDFCVDML 187 >gi|240171882|ref|ZP_04750541.1| hypothetical protein MkanA1_21380 [Mycobacterium kansasii ATCC 12478] Length=213 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/190 (35%), Positives = 93/190 (49%), Gaps = 12/190 (6%) Query 8 YRGVEAAERLATRRRQSLSAGLDLLGSDQHDIAELTIRTICRRAGLSVRYFYESFTDKDE 67 + GV +R A RR ++AG+ LLG + D LT+R +CR+A L+ RYFYESFTD++ Sbjct 10 WTGVPLEDRHAVRRENLIAAGVQLLG--EKDGPALTVRAVCRKAALTERYFYESFTDREH 67 Query 68 FVGRVFDWVVAELVATTQAAVTAVPAREQTRAGMANIVRTITADARVGRLLFSTQLANAV 127 FV V+D V +AT +A TA A E+ A M + D GR+L V Sbjct 68 FVRAVYDDVCTRAMATLMSAHTAREAVERFVALMVD-------DPVRGRVLLLAPTVEPV 120 Query 128 ITRKRAESSALFAMLSGQHAVDTLHAPANDHVKAVAHFAVGGVGQTISAWLAGDVRLDPD 187 +TR AE F L Q + + P K VA +G + +A+L G + Sbjct 121 LTRSGAEWMPNFIELL-QRKLSRIVDPVVQ--KLVATSLIGALTGLFTAYLNGQLGATRQ 177 Query 188 QLVDQLAALL 197 Q +D +L Sbjct 178 QFIDYCVDML 187 Lambda K H 0.318 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 330607424700 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40