BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0277A
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25 157 5e-37
gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG... 155 3e-36
gi|289748048|ref|ZP_06507426.1| conserved hypothetical protein [... 132 2e-29
gi|289749257|ref|ZP_06508635.1| conserved hypothetical protein [... 123 9e-27
gi|15840161|ref|NP_335198.1| hypothetical protein MT0772.6 [Myco... 122 3e-26
gi|15607888|ref|NP_215262.1| hypothetical protein Rv0748 [Mycoba... 121 3e-26
gi|289573366|ref|ZP_06453593.1| antitoxin [Mycobacterium tubercu... 118 2e-25
gi|148660043|ref|YP_001281566.1| hypothetical protein MRA_0286 [... 117 4e-25
gi|289568188|ref|ZP_06448415.1| conserved hypothetical protein [... 115 3e-24
gi|15839659|ref|NP_334696.1| hypothetical protein MT0290 [Mycoba... 112 2e-23
gi|289445811|ref|ZP_06435555.1| antitoxin [Mycobacterium tubercu... 109 1e-22
gi|254549713|ref|ZP_05140160.1| hypothetical protein Mtube_04496... 84.3 6e-15
gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC ... 52.4 3e-05
gi|289441655|ref|ZP_06431399.1| antitoxin [Mycobacterium tubercu... 51.6 4e-05
gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tubercu... 51.2 5e-05
gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycoba... 50.8 6e-05
gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_2064... 50.4 1e-04
gi|297623625|ref|YP_003705059.1| CopG family transcriptional reg... 48.1 4e-04
gi|88812000|ref|ZP_01127253.1| hypothetical protein NB231_06406 ... 48.1 5e-04
gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461... 43.9 0.007
gi|160898240|ref|YP_001563822.1| antitoxin [Delftia acidovorans ... 43.1 0.013
gi|296130775|ref|YP_003638025.1| putative transcriptional regula... 42.4 0.021
gi|258593409|emb|CBE69748.1| conserved protein of unknown functi... 40.4 0.083
gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tubercu... 40.4 0.088
gi|16264147|ref|NP_436939.1| hypothetical protein SM_b20413 [Sin... 40.0 0.12
gi|336038110|gb|AEH84040.1| hypothetical protein SM11_pD1208 [Si... 40.0 0.13
gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [My... 39.7 0.17
gi|302542962|ref|ZP_07295304.1| hypothetical protein SSOG_03387 ... 38.5 0.37
gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683... 37.7 0.62
gi|134291478|ref|YP_001115247.1| hypothetical protein Bcep1808_6... 36.6 1.3
gi|336288124|gb|AEI30374.1| conserved hypothetical protein [uncu... 35.8 2.1
gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122... 35.4 2.7
gi|258593475|emb|CBE69814.1| conserved protein of unknown functi... 35.4 2.9
gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 ... 35.0 3.6
gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aroma... 34.7 4.7
gi|294339104|emb|CAZ87458.1| putative transcriptional regulator ... 34.3 5.6
gi|254363539|ref|ZP_04979585.1| conserved hypothetical protein [... 34.3 5.8
gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [C... 34.3 5.9
gi|167969003|ref|ZP_02551280.1| hypothetical protein MtubH3_1363... 34.3 7.0
gi|315937033|gb|ADU56042.1| hypothetical protein CA37-19 [uncult... 34.3 7.1
gi|340358884|ref|ZP_08681387.1| hypothetical protein HMPREF9062_... 34.3 7.3
gi|289573180|ref|ZP_06453407.1| antitoxin [Mycobacterium tubercu... 33.9 9.1
>gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25
Length=85
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/85 (99%), Positives = 84/85 (99%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDELLATAKRRARERG SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR
Sbjct 1 MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 60
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
PGIDLTSNTVLSEVLDEGLELNSRK
Sbjct 61 PGIDLTSNTVLSEVLDEGLELNSRK 85
>gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224988664|ref|YP_002643351.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str.
Tokyo 172]
gi|121491838|emb|CAL70300.1| Conserved hypothetical protein, antitoxin [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224771777|dbj|BAH24583.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341600207|emb|CCC62876.1| conserved hypothetical protein, antitoxin [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=85
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/85 (98%), Positives = 83/85 (98%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDELLATAKRRARERG SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR
Sbjct 1 MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 60
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
PGIDLTSN VLSEVLDEGLELNSRK
Sbjct 61 PGIDLTSNRVLSEVLDEGLELNSRK 85
>gi|289748048|ref|ZP_06507426.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289688576|gb|EFD56064.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=88
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/85 (93%), Positives = 80/85 (95%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA GGARPTVPVFDAGTGPR
Sbjct 4 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDAGTGPR 63
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
PGIDLTSNTVLSEVLDEGLELNSRK
Sbjct 64 PGIDLTSNTVLSEVLDEGLELNSRK 88
>gi|289749257|ref|ZP_06508635.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689844|gb|EFD57273.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=85
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/85 (90%), Positives = 77/85 (91%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA GGARPTVPVFD GTGPR
Sbjct 1 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPR 60
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
GIDLTSN VLSEVLDEGLELNSRK
Sbjct 61 RGIDLTSNRVLSEVLDEGLELNSRK 85
>gi|15840161|ref|NP_335198.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
gi|13880314|gb|AAK45012.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
Length=88
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/85 (89%), Positives = 76/85 (90%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA GGARPTVPVFD GTGPR
Sbjct 4 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPR 63
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
GIDLTSN LSEVLDEGLELNSRK
Sbjct 64 RGIDLTSNRALSEVLDEGLELNSRK 88
>gi|15607888|ref|NP_215262.1| hypothetical protein Rv0748 [Mycobacterium tuberculosis H37Rv]
gi|31791934|ref|NP_854427.1| hypothetical protein Mb0769 [Mycobacterium bovis AF2122/97]
gi|121636670|ref|YP_976893.1| hypothetical protein BCG_0798 [Mycobacterium bovis BCG str. Pasteur
1173P2]
59 more sequence titles
Length=85
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/85 (89%), Positives = 76/85 (90%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA GGARPTVPVFD GTGPR
Sbjct 1 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPR 60
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
GIDLTSN LSEVLDEGLELNSRK
Sbjct 61 RGIDLTSNRALSEVLDEGLELNSRK 85
>gi|289573366|ref|ZP_06453593.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339630816|ref|YP_004722458.1| hypothetical protein MAF_07580 [Mycobacterium africanum GM041182]
gi|289537797|gb|EFD42375.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339330172|emb|CCC25830.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=85
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/85 (88%), Positives = 75/85 (89%), Gaps = 1/85 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA GGARPT PVFD GTGPR
Sbjct 1 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTGPVFDGGTGPR 60
Query 60 PGIDLTSNTVLSEVLDEGLELNSRK 84
GIDLTSN LSEVLDEGLELNSRK
Sbjct 61 RGIDLTSNRALSEVLDEGLELNSRK 85
>gi|148660043|ref|YP_001281566.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
gi|289552531|ref|ZP_06441741.1| antitoxin [Mycobacterium tuberculosis KZN 605]
gi|148504195|gb|ABQ72004.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
gi|289437163|gb|EFD19656.1| antitoxin [Mycobacterium tuberculosis KZN 605]
Length=60
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/60 (99%), Positives = 60/60 (100%), Gaps = 0/60 (0%)
Query 25 LGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK 84
+GAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK
Sbjct 1 MGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK 60
>gi|289568188|ref|ZP_06448415.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289572856|ref|ZP_06453083.1| antitoxin [Mycobacterium tuberculosis K85]
gi|289748759|ref|ZP_06508137.1| antitoxin [Mycobacterium tuberculosis T92]
gi|289537287|gb|EFD41865.1| antitoxin [Mycobacterium tuberculosis K85]
gi|289541941|gb|EFD45590.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289689346|gb|EFD56775.1| antitoxin [Mycobacterium tuberculosis T92]
Length=60
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/60 (97%), Positives = 59/60 (99%), Gaps = 0/60 (0%)
Query 25 LGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK 84
+GAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSN VLSEVLDEGLELNSRK
Sbjct 1 MGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNSRK 60
>gi|15839659|ref|NP_334696.1| hypothetical protein MT0290 [Mycobacterium tuberculosis CDC1551]
gi|148821473|ref|YP_001286227.1| hypothetical protein TBFG_10282 [Mycobacterium tuberculosis F11]
gi|167968999|ref|ZP_02551276.1| hypothetical protein MtubH3_13612 [Mycobacterium tuberculosis
H37Ra]
15 more sequence titles
Length=57
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/57 (99%), Positives = 57/57 (100%), Gaps = 0/57 (0%)
Query 28 VIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK 84
+IEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK
Sbjct 1 MIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK 57
>gi|289445811|ref|ZP_06435555.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
gi|289418769|gb|EFD15970.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=57
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/57 (97%), Positives = 56/57 (99%), Gaps = 0/57 (0%)
Query 28 VIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK 84
+IEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSN VLSEVLDEGLELNSRK
Sbjct 1 MIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNSRK 57
>gi|254549713|ref|ZP_05140160.1| hypothetical protein Mtube_04496 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=82
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/82 (75%), Positives = 63/82 (77%), Gaps = 2/82 (2%)
Query 5 VSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRP-GI 62
+SISDE+LA AKRRARERG SLGAVIEDALRRE AAA GGA P P F R GI
Sbjct 1 MSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGASPDRPDFSTAVPVRGRGI 60
Query 63 DLTSNTVLSEVLDEGLELNSRK 84
DLTSN LSEVLDEGLELNSRK
Sbjct 61 DLTSNRALSEVLDEGLELNSRK 82
>gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC 12478]
Length=85
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 51/84 (61%), Gaps = 3/84 (3%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRREL-AAARTGGARPTVPVFDAGTGP 58
MRTT+ I DEL K RA G ++ AV+EDA+R L ++ R V +G G
Sbjct 1 MRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSG-GL 59
Query 59 RPGIDLTSNTVLSEVLDEGLELNS 82
RPG+DL+SN ++E +DEG+ +++
Sbjct 60 RPGVDLSSNAAVAEAMDEGVPVDA 83
>gi|289441655|ref|ZP_06431399.1| antitoxin [Mycobacterium tuberculosis T46]
gi|289414574|gb|EFD11814.1| antitoxin [Mycobacterium tuberculosis T46]
Length=39
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/28 (90%), Positives = 26/28 (93%), Gaps = 0/28 (0%)
Query 25 LGAVIEDALRRELAAARTGGARPTVPVF 52
+GAVIEDALRRELAAARTGGARPTVP
Sbjct 1 MGAVIEDALRRELAAARTGGARPTVPFL 28
>gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=85
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 51/84 (61%), Gaps = 3/84 (3%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP 58
MRTT+ I DEL K +A G ++ AV+EDA+RR L + A R V G G
Sbjct 1 MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GM 59
Query 59 RPGIDLTSNTVLSEVLDEGLELNS 82
RPG+DL+SN L+E +++G+ +++
Sbjct 60 RPGVDLSSNAALAEAMNDGVSVDA 83
>gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycobacterium tuberculosis H37Rv]
gi|31794048|ref|NP_856541.1| hypothetical protein Mb2896 [Mycobacterium bovis AF2122/97]
gi|121638753|ref|YP_978977.1| hypothetical protein BCG_2893 [Mycobacterium bovis BCG str. Pasteur
1173P2]
73 more sequence titles
Length=85
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 51/84 (61%), Gaps = 3/84 (3%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP 58
MRTT+ I DEL K +A G ++ AV+EDA+RR L + A R V G G
Sbjct 1 MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL 59
Query 59 RPGIDLTSNTVLSEVLDEGLELNS 82
RPG+DL+SN L+E +++G+ +++
Sbjct 60 RPGVDLSSNAALAEAMNDGVSVDA 83
>gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_20645 [Mycobacterium kansasii ATCC
12478]
Length=86
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/84 (40%), Positives = 51/84 (61%), Gaps = 3/84 (3%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRREL-AAARTGGARPTVPVFDAGTGP 58
+RTT+ I DEL K RA G ++ AV+EDA+R L ++ R V +G G
Sbjct 2 VRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSG-GL 60
Query 59 RPGIDLTSNTVLSEVLDEGLELNS 82
RPG+DL+SN ++E +DEG+ +++
Sbjct 61 RPGVDLSSNAAVAEAMDEGVPVDA 84
>gi|297623625|ref|YP_003705059.1| CopG family transcriptional regulator [Truepera radiovictrix
DSM 17093]
gi|297164805|gb|ADI14516.1| transcriptional regulator, CopG family [Truepera radiovictrix
DSM 17093]
Length=82
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/81 (46%), Positives = 47/81 (59%), Gaps = 8/81 (9%)
Query 1 MRTTVSISDELLATAKRRARE-RGSLGAVIEDALRRELAAARTGGAR---PTVPVFDAG- 55
MRTT+ + DELL AKR A E +L AVIE+ALR L AR GAR P P G
Sbjct 1 MRTTIRLDDELLREAKRLAAETNQTLTAVIEEALRERL--ARRKGARDRPPFTPKVYRGP 58
Query 56 -TGPRPGIDLTSNTVLSEVLD 75
G +PG+DL N L ++++
Sbjct 59 AKGLQPGVDLDDNAALLDLME 79
>gi|88812000|ref|ZP_01127253.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
gi|88790884|gb|EAR21998.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
Length=78
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/77 (43%), Positives = 46/77 (60%), Gaps = 2/77 (2%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDA-GTGP 58
MRTT++I D+LL AK +A G +L +IEDALR L+ R V + A GTG
Sbjct 1 MRTTLNIDDQLLLRAKAQAAVSGVTLAQLIEDALRESLSRRERVEERGRVRIITAKGTGT 60
Query 59 RPGIDLTSNTVLSEVLD 75
RPGIDL + L ++++
Sbjct 61 RPGIDLDHSPSLLDIME 77
>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum
WSM2075]
gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (38%), Positives = 41/75 (55%), Gaps = 1/75 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTT++I D++L AK AR++ S+G VI D R+ L + GG R +P+ A
Sbjct 1 MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLRRPQAGGERNGIPLLSARPDDP 60
Query 60 PGIDLTSNTVLSEVL 74
P +DL L + L
Sbjct 61 PLVDLEMINALRDAL 75
>gi|160898240|ref|YP_001563822.1| antitoxin [Delftia acidovorans SPH-1]
gi|160363824|gb|ABX35437.1| conserved hypothetical protein, antitoxin [Delftia acidovorans
SPH-1]
Length=81
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/77 (36%), Positives = 42/77 (55%), Gaps = 1/77 (1%)
Query 1 MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
M+TT+ ++D LL AK A ++ SL +IE+ L+ L A+ R +PV+ G
Sbjct 1 MKTTLDLNDALLTEAKTYAAQQHTSLTRLIEEGLQLRLRKAQAPARRVRLPVYHGKGGLA 60
Query 60 PGIDLTSNTVLSEVLDE 76
PG+D SN L + D+
Sbjct 61 PGLDALSNRALLDAADQ 77
>gi|296130775|ref|YP_003638025.1| putative transcriptional regulator, CopG family [Cellulomonas
flavigena DSM 20109]
gi|296022590|gb|ADG75826.1| putative transcriptional regulator, CopG family [Cellulomonas
flavigena DSM 20109]
Length=83
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/77 (39%), Positives = 42/77 (55%), Gaps = 2/77 (2%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGT-GP 58
MRTT+ + DEL K A G ++ +V+EDALR EL R RP + G+ G
Sbjct 5 MRTTLHLPDELYREVKAAAARSGRTVTSVVEDALRAELERFRATAERPPFRIDAVGSGGL 64
Query 59 RPGIDLTSNTVLSEVLD 75
PG+DL + L +VL+
Sbjct 65 LPGVDLDDSAALLDVLE 81
>gi|258593409|emb|CBE69748.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=81
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/78 (35%), Positives = 43/78 (56%), Gaps = 1/78 (1%)
Query 1 MRTTVSISDELLATAKRRARERGS-LGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
M+TT+ ++D LL A++ A G+ L A++E+ LRR LA GG G+G +
Sbjct 1 MKTTIEVTDTLLRDARQLAANEGTTLRALVEEGLRRILAEREQGGRFHLRKATFKGSGLQ 60
Query 60 PGIDLTSNTVLSEVLDEG 77
PG+ S + E++ EG
Sbjct 61 PGLTTASWDRIREMIYEG 78
>gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tuberculosis SUMu002]
gi|306786609|ref|ZP_07424931.1| antitoxin [Mycobacterium tuberculosis SUMu003]
gi|306790975|ref|ZP_07429297.1| antitoxin [Mycobacterium tuberculosis SUMu004]
13 more sequence titles
Length=74
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/78 (35%), Positives = 40/78 (52%), Gaps = 5/78 (6%)
Query 1 MRTTVSISDELLATAKRRAR-ERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTT+ + D++L KRR R ER +LG + + L + LAA P V + + R
Sbjct 1 MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE----PPPNVDICWSTADLR 56
Query 60 PGIDLTSNTVLSEVLDEG 77
P +DL + +LD G
Sbjct 57 PRVDLDDKDAVWAILDRG 74
>gi|16264147|ref|NP_436939.1| hypothetical protein SM_b20413 [Sinorhizobium meliloti 1021]
gi|334319719|ref|YP_004556348.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
gi|15140272|emb|CAC48799.1| HYPOTHETICAL PROTEIN SM_b20413 [Sinorhizobium meliloti 1021]
gi|333815878|gb|AEG08545.1| hypothetical protein SinmeB_4262 [Sinorhizobium meliloti BL225C]
gi|334097458|gb|AEG55468.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
Length=75
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/77 (36%), Positives = 44/77 (58%), Gaps = 5/77 (6%)
Query 1 MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTT++I D++L AK A +++ S+G VI + RR L R+GG R +P+ PR
Sbjct 1 MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLL----SPR 56
Query 60 PGIDLTSNTVLSEVLDE 76
P + +++ + DE
Sbjct 57 PDAPPVTLEIVNALRDE 73
>gi|336038110|gb|AEH84040.1| hypothetical protein SM11_pD1208 [Sinorhizobium meliloti SM11]
Length=75
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/77 (36%), Positives = 44/77 (58%), Gaps = 5/77 (6%)
Query 1 MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTT++I D++L AK A +++ S+G VI + RR L R+GG R +P+ PR
Sbjct 1 MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLL----SPR 56
Query 60 PGIDLTSNTVLSEVLDE 76
P + +++ + DE
Sbjct 57 PDAPPVTLEIVNALRDE 73
>gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|121639612|ref|YP_979836.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148663561|ref|YP_001285084.1| hypothetical protein MRA_3733 [Mycobacterium tuberculosis H37Ra]
48 more sequence titles
Length=74
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/78 (35%), Positives = 40/78 (52%), Gaps = 5/78 (6%)
Query 1 MRTTVSISDELLATAKRRAR-ERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR 59
MRTT+ + D++L KRR R ER +LG + + L + LAA P V + + R
Sbjct 1 MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE----PPPNVDIRWSTADLR 56
Query 60 PGIDLTSNTVLSEVLDEG 77
P +DL + +LD G
Sbjct 57 PRVDLDDKDAVWAILDRG 74
>gi|302542962|ref|ZP_07295304.1| hypothetical protein SSOG_03387 [Streptomyces hygroscopicus ATCC
53653]
gi|302460580|gb|EFL23673.1| hypothetical protein SSOG_03387 [Streptomyces himastatinicus
ATCC 53653]
Length=87
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/35 (63%), Positives = 27/35 (78%), Gaps = 1/35 (2%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALR 34
M+TTV ISD LLA A+R ARE G +L A+IE+ LR
Sbjct 7 MKTTVEISDALLAEARRTAREEGTTLRALIEEGLR 41
>gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans
SS3]
gi|343775260|gb|AEM47816.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans
SS3]
Length=77
Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/57 (43%), Positives = 33/57 (58%), Gaps = 6/57 (10%)
Query 1 MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGAR-----PTVPV 51
MRTT++I D++LA AK A R+ S+GAV+ LR+ L T G P +PV
Sbjct 1 MRTTLAIDDDVLAAAKGLADRQHKSVGAVVSALLRQALQPQNTSGGHSRNGIPLLPV 57
>gi|134291478|ref|YP_001115247.1| hypothetical protein Bcep1808_6070 [Burkholderia vietnamiensis
G4]
gi|134134667|gb|ABO58992.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length=85
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/61 (38%), Positives = 32/61 (53%), Gaps = 1/61 (1%)
Query 1 MRTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTG-GARPTVPVFDAGTGPR 59
MRTT+ I D++LA A+ RA+ S+G VI D R L T +R +P+ R
Sbjct 11 MRTTIDIDDDVLAFARERAKPGTSIGKVISDLARAALQRGTTNQSSRNGLPLMPVSATAR 70
Query 60 P 60
P
Sbjct 71 P 71
>gi|336288124|gb|AEI30374.1| conserved hypothetical protein [uncultured microorganism]
Length=96
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (52%), Gaps = 3/80 (3%)
Query 1 MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAA-RTGGARPTVPVFDAGTGP 58
M+TTV I D L A++ A RER +L A+IE+ LRR ++ R G R F G G
Sbjct 1 MKTTVQIPDSLFEEARKVANRERTTLKALIEEGLRRIVSQHKRRNGFRLRKATFK-GKGL 59
Query 59 RPGIDLTSNTVLSEVLDEGL 78
+P ++ S + + G
Sbjct 60 QPLSEVESQESFGRLGEAGF 79
>gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122 [Synechococcus sp. CB0205]
Length=86
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 1/48 (2%)
Query 1 MRTTVSISDELLATAKRRARERGS-LGAVIEDALRRELAAARTGGARP 47
MRTT+S+ D++LA AK AR+R +G+VI + R+ LA A P
Sbjct 8 MRTTLSLDDDVLAAAKVLARQRKQPIGSVISELARQGLAQANRQNPEP 55
>gi|258593475|emb|CBE69814.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=75
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (36%), Positives = 32/56 (58%), Gaps = 1/56 (1%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAG 55
M+TT++I D ++ KR A +G ++ ++E ALR L A R P +P F +G
Sbjct 1 MKTTLNIDDSVMVLLKREAARQGRTMSELVESALRLMLRAQRRRSGLPPLPTFRSG 56
>gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
gi|88792318|gb|EAR23428.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
Length=92
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/78 (38%), Positives = 43/78 (56%), Gaps = 6/78 (7%)
Query 1 MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRREL-AAARTGGARPTVPVFDAGTGP 58
MRTTV++ ++ A K A R R S + D LR+ L + A+ G + P V +G G
Sbjct 5 MRTTVTLEPDVAAKLKELAHRRRASFKETLNDVLRKGLTSQAKAGRSEPFVVKPHSG-GF 63
Query 59 RPGIDLTSNTVLSEVLDE 76
RPGID L+++LD+
Sbjct 64 RPGIDPDK---LNQLLDQ 78
>gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aromatoleum aromaticum EbN1]
gi|56314816|emb|CAI09461.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length=81
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 12/80 (15%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIEDALRREL--AAARTGGAR--PTVPVFDAG 55
MRTT+ I ++LA AK AR++ S+G VI +RR L AAA R P VP F+
Sbjct 1 MRTTLDIESDVLAAAKEIARQQHTSVGKVISQLVRRTLIGAAAPQTVVRQTPAVPGFE-- 58
Query 56 TGPRPGIDLTSNTVLSEVLD 75
P P D+ V +E++D
Sbjct 59 --PFPARDV---IVTNELID 73
>gi|294339104|emb|CAZ87458.1| putative transcriptional regulator [Thiomonas sp. 3As]
Length=75
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (54%), Gaps = 9/65 (13%)
Query 1 MRTTVSISDELLATAKR-RARERGSLGAVIE----DALRRELAAARTGGARPTVPVFDAG 55
MRTTVSI D++L A+ AR+ S+G V+ ALRRE A A G VP+ +
Sbjct 1 MRTTVSIDDDVLNAARHLAARQHKSVGEVLSALARQALRREPALAERNG----VPLLASQ 56
Query 56 TGPRP 60
+P
Sbjct 57 PDAKP 61
>gi|254363539|ref|ZP_04979585.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134149053|gb|EBA41098.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length=71
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/46 (48%), Positives = 27/46 (59%), Gaps = 4/46 (8%)
Query 2 RTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTGGARP 47
+TTV + DEL A KR AR+RG V E + RE A GGA+P
Sbjct 3 KTTVYLPDELKAAVKRAARQRG----VSEAQVIRESIWAAVGGAKP 44
>gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola
LSR1]
gi|304283784|gb|EFL92178.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola
LSR1]
Length=82
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/38 (53%), Positives = 26/38 (69%), Gaps = 1/38 (2%)
Query 1 MRTTVSISDELLATAK-RRARERGSLGAVIEDALRREL 37
MRTT++I D++LA AK AR+ SLGAVI R+ L
Sbjct 9 MRTTLAIDDDILAAAKGLAARQNKSLGAVISSLARQAL 46
>gi|167969003|ref|ZP_02551280.1| hypothetical protein MtubH3_13632 [Mycobacterium tuberculosis
H37Ra]
Length=71
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/46 (48%), Positives = 28/46 (61%), Gaps = 4/46 (8%)
Query 2 RTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTGGARP 47
+TTV + DEL A+ KR AR+RG V E + RE A GGA+P
Sbjct 3 KTTVYLPDELKASVKRAARQRG----VSEAQVIRESIRAAVGGAKP 44
>gi|315937033|gb|ADU56042.1| hypothetical protein CA37-19 [uncultured organism CA37]
Length=1849
Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/58 (38%), Positives = 28/58 (49%), Gaps = 0/58 (0%)
Query 21 ERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGL 78
E G LGA+I D L+R +A G T P DAGT +P + T +L GL
Sbjct 1510 EDGPLGALILDDLQRPVAPGAVGDLYVTGPAVDAGTADQPSVPCPFGTAGHRMLRTGL 1567
>gi|340358884|ref|ZP_08681387.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339885630|gb|EGQ75339.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon
448 str. F0400]
Length=77
Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/62 (44%), Positives = 33/62 (54%), Gaps = 3/62 (4%)
Query 1 MRTTVSISDELLATAKRRARERG-SLGAVIED-ALRRELAAARTGGARPTVPVFDAGTGP 58
MRTT+ I D +LA A+ +AR G SLG + D ALR G+R VPVF G
Sbjct 1 MRTTLDIDDSVLAVAREKARREGLSLGRAVSDYALRGIRGGGPDAGSR-GVPVFTPPQGG 59
Query 59 RP 60
P
Sbjct 60 PP 61
>gi|289573180|ref|ZP_06453407.1| antitoxin [Mycobacterium tuberculosis K85]
gi|289537611|gb|EFD42189.1| antitoxin [Mycobacterium tuberculosis K85]
Length=71
Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/46 (48%), Positives = 27/46 (59%), Gaps = 4/46 (8%)
Query 2 RTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTGGARP 47
+TTV + DEL A KR AR+RG V E + RE A GGA+P
Sbjct 3 KTTVYLPDELKAAVKRAARQRG----VSEAQVIRESIRAAVGGAKP 44
Lambda K H
0.313 0.131 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131923386480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40