BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0277A

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|332321844|sp|P0CW33.1|VPB25_MYCTU  RecName: Full=Antitoxin VapB25   157    5e-37
gi|121636191|ref|YP_976414.1|  antitoxin [Mycobacterium bovis BCG...   155    3e-36
gi|289748048|ref|ZP_06507426.1|  conserved hypothetical protein [...   132    2e-29
gi|289749257|ref|ZP_06508635.1|  conserved hypothetical protein [...   123    9e-27
gi|15840161|ref|NP_335198.1|  hypothetical protein MT0772.6 [Myco...   122    3e-26
gi|15607888|ref|NP_215262.1|  hypothetical protein Rv0748 [Mycoba...   121    3e-26
gi|289573366|ref|ZP_06453593.1|  antitoxin [Mycobacterium tubercu...   118    2e-25
gi|148660043|ref|YP_001281566.1|  hypothetical protein MRA_0286 [...   117    4e-25
gi|289568188|ref|ZP_06448415.1|  conserved hypothetical protein [...   115    3e-24
gi|15839659|ref|NP_334696.1|  hypothetical protein MT0290 [Mycoba...   112    2e-23
gi|289445811|ref|ZP_06435555.1|  antitoxin [Mycobacterium tubercu...   109    1e-22
gi|254549713|ref|ZP_05140160.1|  hypothetical protein Mtube_04496...  84.3    6e-15
gi|157382509|gb|ABV48745.1|  Rv2871 [Mycobacterium kansasii ATCC ...  52.4    3e-05
gi|289441655|ref|ZP_06431399.1|  antitoxin [Mycobacterium tubercu...  51.6    4e-05
gi|254551940|ref|ZP_05142387.1|  antitoxin [Mycobacterium tubercu...  51.2    5e-05
gi|15610008|ref|NP_217387.1|  hypothetical protein Rv2871 [Mycoba...  50.8    6e-05
gi|240171735|ref|ZP_04750394.1|  hypothetical protein MkanA1_2064...  50.4    1e-04
gi|297623625|ref|YP_003705059.1|  CopG family transcriptional reg...  48.1    4e-04
gi|88812000|ref|ZP_01127253.1|  hypothetical protein NB231_06406 ...  48.1    5e-04
gi|337267946|ref|YP_004612001.1|  hypothetical protein Mesop_3461...  43.9    0.007
gi|160898240|ref|YP_001563822.1|  antitoxin [Delftia acidovorans ...  43.1    0.013
gi|296130775|ref|YP_003638025.1|  putative transcriptional regula...  42.4    0.021
gi|258593409|emb|CBE69748.1|  conserved protein of unknown functi...  40.4    0.083
gi|306778586|ref|ZP_07416923.1|  antitoxin [Mycobacterium tubercu...  40.4    0.088
gi|16264147|ref|NP_436939.1|  hypothetical protein SM_b20413 [Sin...  40.0    0.12 
gi|336038110|gb|AEH84040.1|  hypothetical protein SM11_pD1208 [Si...  40.0    0.13 
gi|15843316|ref|NP_338353.1|  CopG family DNA-binding protein [My...  39.7    0.17 
gi|302542962|ref|ZP_07295304.1|  hypothetical protein SSOG_03387 ...  38.5    0.37 
gi|344199816|ref|YP_004784142.1|  hypothetical protein Acife_1683...  37.7    0.62 
gi|134291478|ref|YP_001115247.1|  hypothetical protein Bcep1808_6...  36.6    1.3  
gi|336288124|gb|AEI30374.1|  conserved hypothetical protein [uncu...  35.8    2.1  
gi|317967918|ref|ZP_07969308.1|  hypothetical protein SCB02_00122...  35.4    2.7  
gi|258593475|emb|CBE69814.1|  conserved protein of unknown functi...  35.4    2.9  
gi|88810688|ref|ZP_01125945.1|  hypothetical protein NB231_16448 ...  35.0    3.6  
gi|56478773|ref|YP_160362.1|  hypothetical protein ebA5867 [Aroma...  34.7    4.7  
gi|294339104|emb|CAZ87458.1|  putative transcriptional regulator ...  34.3    5.6  
gi|254363539|ref|ZP_04979585.1|  conserved hypothetical protein [...  34.3    5.8  
gi|304413693|ref|ZP_07395137.1|  hypothetical protein REG_0768 [C...  34.3    5.9  
gi|167969003|ref|ZP_02551280.1|  hypothetical protein MtubH3_1363...  34.3    7.0  
gi|315937033|gb|ADU56042.1|  hypothetical protein CA37-19 [uncult...  34.3    7.1  
gi|340358884|ref|ZP_08681387.1|  hypothetical protein HMPREF9062_...  34.3    7.3  
gi|289573180|ref|ZP_06453407.1|  antitoxin [Mycobacterium tubercu...  33.9    9.1  


>gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25
Length=85

 Score =  157 bits (397),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 84/85 (99%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDELLATAKRRARERG SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR
Sbjct  1   MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  60

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
           PGIDLTSNTVLSEVLDEGLELNSRK
Sbjct  61  PGIDLTSNTVLSEVLDEGLELNSRK  85


>gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988664|ref|YP_002643351.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|121491838|emb|CAL70300.1| Conserved hypothetical protein, antitoxin [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|224771777|dbj|BAH24583.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|341600207|emb|CCC62876.1| conserved hypothetical protein, antitoxin [Mycobacterium bovis 
BCG str. Moreau RDJ]
Length=85

 Score =  155 bits (391),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 83/85 (98%), Positives = 83/85 (98%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDELLATAKRRARERG SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR
Sbjct  1   MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  60

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
           PGIDLTSN VLSEVLDEGLELNSRK
Sbjct  61  PGIDLTSNRVLSEVLDEGLELNSRK  85


>gi|289748048|ref|ZP_06507426.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688576|gb|EFD56064.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=88

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 79/85 (93%), Positives = 80/85 (95%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA  GGARPTVPVFDAGTGPR
Sbjct  4   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDAGTGPR  63

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
           PGIDLTSNTVLSEVLDEGLELNSRK
Sbjct  64  PGIDLTSNTVLSEVLDEGLELNSRK  88


>gi|289749257|ref|ZP_06508635.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689844|gb|EFD57273.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=85

 Score =  123 bits (309),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 76/85 (90%), Positives = 77/85 (91%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA  GGARPTVPVFD GTGPR
Sbjct  1   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPR  60

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
            GIDLTSN VLSEVLDEGLELNSRK
Sbjct  61  RGIDLTSNRVLSEVLDEGLELNSRK  85


>gi|15840161|ref|NP_335198.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
 gi|13880314|gb|AAK45012.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
Length=88

 Score =  122 bits (305),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 75/85 (89%), Positives = 76/85 (90%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA  GGARPTVPVFD GTGPR
Sbjct  4   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPR  63

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
            GIDLTSN  LSEVLDEGLELNSRK
Sbjct  64  RGIDLTSNRALSEVLDEGLELNSRK  88


>gi|15607888|ref|NP_215262.1| hypothetical protein Rv0748 [Mycobacterium tuberculosis H37Rv]
 gi|31791934|ref|NP_854427.1| hypothetical protein Mb0769 [Mycobacterium bovis AF2122/97]
 gi|121636670|ref|YP_976893.1| hypothetical protein BCG_0798 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 59 more sequence titles
 Length=85

 Score =  121 bits (304),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 75/85 (89%), Positives = 76/85 (90%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA  GGARPTVPVFD GTGPR
Sbjct  1   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPR  60

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
            GIDLTSN  LSEVLDEGLELNSRK
Sbjct  61  RGIDLTSNRALSEVLDEGLELNSRK  85


>gi|289573366|ref|ZP_06453593.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339630816|ref|YP_004722458.1| hypothetical protein MAF_07580 [Mycobacterium africanum GM041182]
 gi|289537797|gb|EFD42375.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339330172|emb|CCC25830.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=85

 Score =  118 bits (296),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 74/85 (88%), Positives = 75/85 (89%), Gaps = 1/85 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTTVSISDE+LA AKRRARERG SLGAVIEDALRRE AAA  GGARPT PVFD GTGPR
Sbjct  1   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTGPVFDGGTGPR  60

Query  60  PGIDLTSNTVLSEVLDEGLELNSRK  84
            GIDLTSN  LSEVLDEGLELNSRK
Sbjct  61  RGIDLTSNRALSEVLDEGLELNSRK  85


>gi|148660043|ref|YP_001281566.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
 gi|289552531|ref|ZP_06441741.1| antitoxin [Mycobacterium tuberculosis KZN 605]
 gi|148504195|gb|ABQ72004.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
 gi|289437163|gb|EFD19656.1| antitoxin [Mycobacterium tuberculosis KZN 605]
Length=60

 Score =  117 bits (294),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 59/60 (99%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

Query  25  LGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK  84
           +GAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK
Sbjct  1   MGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK  60


>gi|289568188|ref|ZP_06448415.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572856|ref|ZP_06453083.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289748759|ref|ZP_06508137.1| antitoxin [Mycobacterium tuberculosis T92]
 gi|289537287|gb|EFD41865.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289541941|gb|EFD45590.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289689346|gb|EFD56775.1| antitoxin [Mycobacterium tuberculosis T92]
Length=60

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 58/60 (97%), Positives = 59/60 (99%), Gaps = 0/60 (0%)

Query  25  LGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK  84
           +GAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSN VLSEVLDEGLELNSRK
Sbjct  1   MGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNSRK  60


>gi|15839659|ref|NP_334696.1| hypothetical protein MT0290 [Mycobacterium tuberculosis CDC1551]
 gi|148821473|ref|YP_001286227.1| hypothetical protein TBFG_10282 [Mycobacterium tuberculosis F11]
 gi|167968999|ref|ZP_02551276.1| hypothetical protein MtubH3_13612 [Mycobacterium tuberculosis 
H37Ra]
 15 more sequence titles
 Length=57

 Score =  112 bits (279),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 56/57 (99%), Positives = 57/57 (100%), Gaps = 0/57 (0%)

Query  28  VIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK  84
           +IEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK
Sbjct  1   MIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK  57


>gi|289445811|ref|ZP_06435555.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289418769|gb|EFD15970.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=57

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/57 (97%), Positives = 56/57 (99%), Gaps = 0/57 (0%)

Query  28  VIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNSRK  84
           +IEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSN VLSEVLDEGLELNSRK
Sbjct  1   MIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNSRK  57


>gi|254549713|ref|ZP_05140160.1| hypothetical protein Mtube_04496 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=82

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 61/82 (75%), Positives = 63/82 (77%), Gaps = 2/82 (2%)

Query  5   VSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRP-GI  62
           +SISDE+LA AKRRARERG SLGAVIEDALRRE AAA  GGA P  P F      R  GI
Sbjct  1   MSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGASPDRPDFSTAVPVRGRGI  60

Query  63  DLTSNTVLSEVLDEGLELNSRK  84
           DLTSN  LSEVLDEGLELNSRK
Sbjct  61  DLTSNRALSEVLDEGLELNSRK  82


>gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC 12478]
Length=85

 Score = 52.4 bits (124),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 51/84 (61%), Gaps = 3/84 (3%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRREL-AAARTGGARPTVPVFDAGTGP  58
           MRTT+ I DEL    K RA   G ++ AV+EDA+R  L    ++   R  V    +G G 
Sbjct  1   MRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSG-GL  59

Query  59  RPGIDLTSNTVLSEVLDEGLELNS  82
           RPG+DL+SN  ++E +DEG+ +++
Sbjct  60  RPGVDLSSNAAVAEAMDEGVPVDA  83


>gi|289441655|ref|ZP_06431399.1| antitoxin [Mycobacterium tuberculosis T46]
 gi|289414574|gb|EFD11814.1| antitoxin [Mycobacterium tuberculosis T46]
Length=39

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 25/28 (90%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  25  LGAVIEDALRRELAAARTGGARPTVPVF  52
           +GAVIEDALRRELAAARTGGARPTVP  
Sbjct  1   MGAVIEDALRRELAAARTGGARPTVPFL  28


>gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=85

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 51/84 (61%), Gaps = 3/84 (3%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP  58
           MRTT+ I DEL    K +A   G ++ AV+EDA+RR L   +   A R  V     G G 
Sbjct  1   MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GM  59

Query  59  RPGIDLTSNTVLSEVLDEGLELNS  82
           RPG+DL+SN  L+E +++G+ +++
Sbjct  60  RPGVDLSSNAALAEAMNDGVSVDA  83


>gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycobacterium tuberculosis H37Rv]
 gi|31794048|ref|NP_856541.1| hypothetical protein Mb2896 [Mycobacterium bovis AF2122/97]
 gi|121638753|ref|YP_978977.1| hypothetical protein BCG_2893 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 73 more sequence titles
 Length=85

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 51/84 (61%), Gaps = 3/84 (3%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP  58
           MRTT+ I DEL    K +A   G ++ AV+EDA+RR L   +   A R  V     G G 
Sbjct  1   MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL  59

Query  59  RPGIDLTSNTVLSEVLDEGLELNS  82
           RPG+DL+SN  L+E +++G+ +++
Sbjct  60  RPGVDLSSNAALAEAMNDGVSVDA  83


>gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_20645 [Mycobacterium kansasii ATCC 
12478]
Length=86

 Score = 50.4 bits (119),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 33/84 (40%), Positives = 51/84 (61%), Gaps = 3/84 (3%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRREL-AAARTGGARPTVPVFDAGTGP  58
           +RTT+ I DEL    K RA   G ++ AV+EDA+R  L    ++   R  V    +G G 
Sbjct  2   VRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSG-GL  60

Query  59  RPGIDLTSNTVLSEVLDEGLELNS  82
           RPG+DL+SN  ++E +DEG+ +++
Sbjct  61  RPGVDLSSNAAVAEAMDEGVPVDA  84


>gi|297623625|ref|YP_003705059.1| CopG family transcriptional regulator [Truepera radiovictrix 
DSM 17093]
 gi|297164805|gb|ADI14516.1| transcriptional regulator, CopG family [Truepera radiovictrix 
DSM 17093]
Length=82

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 37/81 (46%), Positives = 47/81 (59%), Gaps = 8/81 (9%)

Query  1   MRTTVSISDELLATAKRRARE-RGSLGAVIEDALRRELAAARTGGAR---PTVPVFDAG-  55
           MRTT+ + DELL  AKR A E   +L AVIE+ALR  L  AR  GAR   P  P    G 
Sbjct  1   MRTTIRLDDELLREAKRLAAETNQTLTAVIEEALRERL--ARRKGARDRPPFTPKVYRGP  58

Query  56  -TGPRPGIDLTSNTVLSEVLD  75
             G +PG+DL  N  L ++++
Sbjct  59  AKGLQPGVDLDDNAALLDLME  79


>gi|88812000|ref|ZP_01127253.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
 gi|88790884|gb|EAR21998.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
Length=78

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 46/77 (60%), Gaps = 2/77 (2%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDA-GTGP  58
           MRTT++I D+LL  AK +A   G +L  +IEDALR  L+       R  V +  A GTG 
Sbjct  1   MRTTLNIDDQLLLRAKAQAAVSGVTLAQLIEDALRESLSRRERVEERGRVRIITAKGTGT  60

Query  59  RPGIDLTSNTVLSEVLD  75
           RPGIDL  +  L ++++
Sbjct  61  RPGIDLDHSPSLLDIME  77


>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum 
WSM2075]
 gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87

 Score = 43.9 bits (102),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 28/75 (38%), Positives = 41/75 (55%), Gaps = 1/75 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTT++I D++L  AK  AR++  S+G VI D  R+ L   + GG R  +P+  A     
Sbjct  1   MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLRRPQAGGERNGIPLLSARPDDP  60

Query  60  PGIDLTSNTVLSEVL  74
           P +DL     L + L
Sbjct  61  PLVDLEMINALRDAL  75


>gi|160898240|ref|YP_001563822.1| antitoxin [Delftia acidovorans SPH-1]
 gi|160363824|gb|ABX35437.1| conserved hypothetical protein, antitoxin [Delftia acidovorans 
SPH-1]
Length=81

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 27/77 (36%), Positives = 42/77 (55%), Gaps = 1/77 (1%)

Query  1   MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           M+TT+ ++D LL  AK  A ++  SL  +IE+ L+  L  A+    R  +PV+    G  
Sbjct  1   MKTTLDLNDALLTEAKTYAAQQHTSLTRLIEEGLQLRLRKAQAPARRVRLPVYHGKGGLA  60

Query  60  PGIDLTSNTVLSEVLDE  76
           PG+D  SN  L +  D+
Sbjct  61  PGLDALSNRALLDAADQ  77


>gi|296130775|ref|YP_003638025.1| putative transcriptional regulator, CopG family [Cellulomonas 
flavigena DSM 20109]
 gi|296022590|gb|ADG75826.1| putative transcriptional regulator, CopG family [Cellulomonas 
flavigena DSM 20109]
Length=83

 Score = 42.4 bits (98),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 30/77 (39%), Positives = 42/77 (55%), Gaps = 2/77 (2%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAGT-GP  58
           MRTT+ + DEL    K  A   G ++ +V+EDALR EL   R    RP   +   G+ G 
Sbjct  5   MRTTLHLPDELYREVKAAAARSGRTVTSVVEDALRAELERFRATAERPPFRIDAVGSGGL  64

Query  59  RPGIDLTSNTVLSEVLD  75
            PG+DL  +  L +VL+
Sbjct  65  LPGVDLDDSAALLDVLE  81


>gi|258593409|emb|CBE69748.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=81

 Score = 40.4 bits (93),  Expect = 0.083, Method: Compositional matrix adjust.
 Identities = 27/78 (35%), Positives = 43/78 (56%), Gaps = 1/78 (1%)

Query  1   MRTTVSISDELLATAKRRARERGS-LGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           M+TT+ ++D LL  A++ A   G+ L A++E+ LRR LA    GG          G+G +
Sbjct  1   MKTTIEVTDTLLRDARQLAANEGTTLRALVEEGLRRILAEREQGGRFHLRKATFKGSGLQ  60

Query  60  PGIDLTSNTVLSEVLDEG  77
           PG+   S   + E++ EG
Sbjct  61  PGLTTASWDRIREMIYEG  78


>gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|306786609|ref|ZP_07424931.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|306790975|ref|ZP_07429297.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 13 more sequence titles
 Length=74

 Score = 40.4 bits (93),  Expect = 0.088, Method: Compositional matrix adjust.
 Identities = 27/78 (35%), Positives = 40/78 (52%), Gaps = 5/78 (6%)

Query  1   MRTTVSISDELLATAKRRAR-ERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTT+ + D++L   KRR R ER +LG +  + L + LAA       P V +  +    R
Sbjct  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE----PPPNVDICWSTADLR  56

Query  60  PGIDLTSNTVLSEVLDEG  77
           P +DL     +  +LD G
Sbjct  57  PRVDLDDKDAVWAILDRG  74


>gi|16264147|ref|NP_436939.1| hypothetical protein SM_b20413 [Sinorhizobium meliloti 1021]
 gi|334319719|ref|YP_004556348.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
 gi|15140272|emb|CAC48799.1| HYPOTHETICAL PROTEIN SM_b20413 [Sinorhizobium meliloti 1021]
 gi|333815878|gb|AEG08545.1| hypothetical protein SinmeB_4262 [Sinorhizobium meliloti BL225C]
 gi|334097458|gb|AEG55468.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
Length=75

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 27/77 (36%), Positives = 44/77 (58%), Gaps = 5/77 (6%)

Query  1   MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTT++I D++L  AK  A +++ S+G VI +  RR L   R+GG R  +P+      PR
Sbjct  1   MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLL----SPR  56

Query  60  PGIDLTSNTVLSEVLDE  76
           P     +  +++ + DE
Sbjct  57  PDAPPVTLEIVNALRDE  73


>gi|336038110|gb|AEH84040.1| hypothetical protein SM11_pD1208 [Sinorhizobium meliloti SM11]
Length=75

 Score = 40.0 bits (92),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 27/77 (36%), Positives = 44/77 (58%), Gaps = 5/77 (6%)

Query  1   MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTT++I D++L  AK  A +++ S+G VI +  RR L   R+GG R  +P+      PR
Sbjct  1   MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLL----SPR  56

Query  60  PGIDLTSNTVLSEVLDE  76
           P     +  +++ + DE
Sbjct  57  PDAPPVTLEIVNALRDE  73


>gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|121639612|ref|YP_979836.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663561|ref|YP_001285084.1| hypothetical protein MRA_3733 [Mycobacterium tuberculosis H37Ra]
 48 more sequence titles
 Length=74

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 27/78 (35%), Positives = 40/78 (52%), Gaps = 5/78 (6%)

Query  1   MRTTVSISDELLATAKRRAR-ERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  59
           MRTT+ + D++L   KRR R ER +LG +  + L + LAA       P V +  +    R
Sbjct  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE----PPPNVDIRWSTADLR  56

Query  60  PGIDLTSNTVLSEVLDEG  77
           P +DL     +  +LD G
Sbjct  57  PRVDLDDKDAVWAILDRG  74


>gi|302542962|ref|ZP_07295304.1| hypothetical protein SSOG_03387 [Streptomyces hygroscopicus ATCC 
53653]
 gi|302460580|gb|EFL23673.1| hypothetical protein SSOG_03387 [Streptomyces himastatinicus 
ATCC 53653]
Length=87

 Score = 38.5 bits (88),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 22/35 (63%), Positives = 27/35 (78%), Gaps = 1/35 (2%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALR  34
           M+TTV ISD LLA A+R ARE G +L A+IE+ LR
Sbjct  7   MKTTVEISDALLAEARRTAREEGTTLRALIEEGLR  41


>gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans 
SS3]
 gi|343775260|gb|AEM47816.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans 
SS3]
Length=77

 Score = 37.7 bits (86),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 33/57 (58%), Gaps = 6/57 (10%)

Query  1   MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAARTGGAR-----PTVPV  51
           MRTT++I D++LA AK  A R+  S+GAV+   LR+ L    T G       P +PV
Sbjct  1   MRTTLAIDDDVLAAAKGLADRQHKSVGAVVSALLRQALQPQNTSGGHSRNGIPLLPV  57


>gi|134291478|ref|YP_001115247.1| hypothetical protein Bcep1808_6070 [Burkholderia vietnamiensis 
G4]
 gi|134134667|gb|ABO58992.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length=85

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 32/61 (53%), Gaps = 1/61 (1%)

Query  1   MRTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTG-GARPTVPVFDAGTGPR  59
           MRTT+ I D++LA A+ RA+   S+G VI D  R  L    T   +R  +P+       R
Sbjct  11  MRTTIDIDDDVLAFARERAKPGTSIGKVISDLARAALQRGTTNQSSRNGLPLMPVSATAR  70

Query  60  P  60
           P
Sbjct  71  P  71


>gi|336288124|gb|AEI30374.1| conserved hypothetical protein [uncultured microorganism]
Length=96

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (52%), Gaps = 3/80 (3%)

Query  1   MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRRELAAA-RTGGARPTVPVFDAGTGP  58
           M+TTV I D L   A++ A RER +L A+IE+ LRR ++   R  G R     F  G G 
Sbjct  1   MKTTVQIPDSLFEEARKVANRERTTLKALIEEGLRRIVSQHKRRNGFRLRKATFK-GKGL  59

Query  59  RPGIDLTSNTVLSEVLDEGL  78
           +P  ++ S      + + G 
Sbjct  60  QPLSEVESQESFGRLGEAGF  79


>gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122 [Synechococcus sp. CB0205]
Length=86

 Score = 35.4 bits (80),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  1   MRTTVSISDELLATAKRRARERGS-LGAVIEDALRRELAAARTGGARP  47
           MRTT+S+ D++LA AK  AR+R   +G+VI +  R+ LA A      P
Sbjct  8   MRTTLSLDDDVLAAAKVLARQRKQPIGSVISELARQGLAQANRQNPEP  55


>gi|258593475|emb|CBE69814.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=75

 Score = 35.4 bits (80),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 32/56 (58%), Gaps = 1/56 (1%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRRELAAARTGGARPTVPVFDAG  55
           M+TT++I D ++   KR A  +G ++  ++E ALR  L A R     P +P F +G
Sbjct  1   MKTTLNIDDSVMVLLKREAARQGRTMSELVESALRLMLRAQRRRSGLPPLPTFRSG  56


>gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
 gi|88792318|gb|EAR23428.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
Length=92

 Score = 35.0 bits (79),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 29/78 (38%), Positives = 43/78 (56%), Gaps = 6/78 (7%)

Query  1   MRTTVSISDELLATAKRRA-RERGSLGAVIEDALRREL-AAARTGGARPTVPVFDAGTGP  58
           MRTTV++  ++ A  K  A R R S    + D LR+ L + A+ G + P V    +G G 
Sbjct  5   MRTTVTLEPDVAAKLKELAHRRRASFKETLNDVLRKGLTSQAKAGRSEPFVVKPHSG-GF  63

Query  59  RPGIDLTSNTVLSEVLDE  76
           RPGID      L+++LD+
Sbjct  64  RPGIDPDK---LNQLLDQ  78


>gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aromatoleum aromaticum EbN1]
 gi|56314816|emb|CAI09461.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length=81

 Score = 34.7 bits (78),  Expect = 4.7, Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 12/80 (15%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIEDALRREL--AAARTGGAR--PTVPVFDAG  55
           MRTT+ I  ++LA AK  AR++  S+G VI   +RR L  AAA     R  P VP F+  
Sbjct  1   MRTTLDIESDVLAAAKEIARQQHTSVGKVISQLVRRTLIGAAAPQTVVRQTPAVPGFE--  58

Query  56  TGPRPGIDLTSNTVLSEVLD  75
             P P  D+    V +E++D
Sbjct  59  --PFPARDV---IVTNELID  73


>gi|294339104|emb|CAZ87458.1| putative transcriptional regulator [Thiomonas sp. 3As]
Length=75

 Score = 34.3 bits (77),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (54%), Gaps = 9/65 (13%)

Query  1   MRTTVSISDELLATAKR-RARERGSLGAVIE----DALRRELAAARTGGARPTVPVFDAG  55
           MRTTVSI D++L  A+   AR+  S+G V+      ALRRE A A   G    VP+  + 
Sbjct  1   MRTTVSIDDDVLNAARHLAARQHKSVGEVLSALARQALRREPALAERNG----VPLLASQ  56

Query  56  TGPRP  60
              +P
Sbjct  57  PDAKP  61


>gi|254363539|ref|ZP_04979585.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|134149053|gb|EBA41098.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
Length=71

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 27/46 (59%), Gaps = 4/46 (8%)

Query  2   RTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTGGARP  47
           +TTV + DEL A  KR AR+RG    V E  + RE   A  GGA+P
Sbjct  3   KTTVYLPDELKAAVKRAARQRG----VSEAQVIRESIWAAVGGAKP  44


>gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola 
LSR1]
 gi|304283784|gb|EFL92178.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola 
LSR1]
Length=82

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 20/38 (53%), Positives = 26/38 (69%), Gaps = 1/38 (2%)

Query  1   MRTTVSISDELLATAK-RRARERGSLGAVIEDALRREL  37
           MRTT++I D++LA AK   AR+  SLGAVI    R+ L
Sbjct  9   MRTTLAIDDDILAAAKGLAARQNKSLGAVISSLARQAL  46


>gi|167969003|ref|ZP_02551280.1| hypothetical protein MtubH3_13632 [Mycobacterium tuberculosis 
H37Ra]
Length=71

 Score = 34.3 bits (77),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 28/46 (61%), Gaps = 4/46 (8%)

Query  2   RTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTGGARP  47
           +TTV + DEL A+ KR AR+RG    V E  + RE   A  GGA+P
Sbjct  3   KTTVYLPDELKASVKRAARQRG----VSEAQVIRESIRAAVGGAKP  44


>gi|315937033|gb|ADU56042.1| hypothetical protein CA37-19 [uncultured organism CA37]
Length=1849

 Score = 34.3 bits (77),  Expect = 7.1, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 28/58 (49%), Gaps = 0/58 (0%)

Query  21    ERGSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGL  78
             E G LGA+I D L+R +A    G    T P  DAGT  +P +     T    +L  GL
Sbjct  1510  EDGPLGALILDDLQRPVAPGAVGDLYVTGPAVDAGTADQPSVPCPFGTAGHRMLRTGL  1567


>gi|340358884|ref|ZP_08681387.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon 
448 str. F0400]
 gi|339885630|gb|EGQ75339.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon 
448 str. F0400]
Length=77

 Score = 34.3 bits (77),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 33/62 (54%), Gaps = 3/62 (4%)

Query  1   MRTTVSISDELLATAKRRARERG-SLGAVIED-ALRRELAAARTGGARPTVPVFDAGTGP  58
           MRTT+ I D +LA A+ +AR  G SLG  + D ALR         G+R  VPVF    G 
Sbjct  1   MRTTLDIDDSVLAVAREKARREGLSLGRAVSDYALRGIRGGGPDAGSR-GVPVFTPPQGG  59

Query  59  RP  60
            P
Sbjct  60  PP  61


>gi|289573180|ref|ZP_06453407.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289537611|gb|EFD42189.1| antitoxin [Mycobacterium tuberculosis K85]
Length=71

 Score = 33.9 bits (76),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 27/46 (59%), Gaps = 4/46 (8%)

Query  2   RTTVSISDELLATAKRRARERGSLGAVIEDALRRELAAARTGGARP  47
           +TTV + DEL A  KR AR+RG    V E  + RE   A  GGA+P
Sbjct  3   KTTVYLPDELKAAVKRAARQRG----VSEAQVIRESIRAAVGGAKP  44



Lambda     K      H
   0.313    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131923386480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40