BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0277c

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607418|ref|NP_214791.1|  hypothetical protein Rv0277c [Mycob...   281    2e-74
gi|253797202|ref|YP_003030203.1|  toxin [Mycobacterium tuberculos...   279    8e-74
gi|306774366|ref|ZP_07412703.1|  toxin [Mycobacterium tuberculosi...   279    9e-74
gi|340625313|ref|YP_004743765.1|  hypothetical protein MCAN_02841...   272    1e-71
gi|121636671|ref|YP_976894.1|  hypothetical protein BCG_0799 [Myc...   266    6e-70
gi|15607889|ref|NP_215263.1|  hypothetical protein Rv0749 [Mycoba...   266    1e-69
gi|340625767|ref|YP_004744219.1|  hypothetical protein MCAN_07521...   264    4e-69
gi|289744472|ref|ZP_06503850.1|  conserved hypothetical protein [...   248    2e-64
gi|289756836|ref|ZP_06516214.1|  conserved hypothetical protein [...   192    1e-47
gi|88811999|ref|ZP_01127252.1|  hypothetical protein NB231_06401 ...   112    2e-23
gi|116748338|ref|YP_845025.1|  PilT domain-containing protein [Sy...   111    4e-23
gi|340627865|ref|YP_004746317.1|  hypothetical protein MCAN_28941...   105    2e-21
gi|15610009|ref|NP_217388.1|  hypothetical protein Rv2872 [Mycoba...   105    3e-21
gi|121638754|ref|YP_978978.1|  hypothetical protein BCG_2894 [Myc...   103    7e-21
gi|297623624|ref|YP_003705058.1|  PIN domain-containing protein [...   102    1e-20
gi|240171734|ref|ZP_04750393.1|  hypothetical protein MkanA1_2064...   101    4e-20
gi|297567544|ref|YP_003686516.1|  PIN domain-containing protein f...  99.4    2e-19
gi|296130776|ref|YP_003638026.1|  PIN domain protein family prote...  99.0    2e-19
gi|116624725|ref|YP_826881.1|  PilT domain-containing protein [Ca...  96.7    1e-18
gi|297623633|ref|YP_003705067.1|  PIN domain-containing protein [...  94.7    4e-18
gi|88810689|ref|ZP_01125946.1|  hypothetical protein NB231_16453 ...  93.6    9e-18
gi|308270136|emb|CBX26748.1|  hypothetical protein N47_A07770 [un...  88.2    3e-16
gi|300780204|ref|ZP_07090060.1|  PilT domain protein [Corynebacte...  85.9    2e-15
gi|160898241|ref|YP_001563823.1|  PilT domain-containing protein ...  81.3    5e-14
gi|340627115|ref|YP_004745567.1|  hypothetical protein MCAN_21291...  79.0    2e-13
gi|145221522|ref|YP_001132200.1|  PilT domain-containing protein ...  78.2    4e-13
gi|333991903|ref|YP_004524517.1|  PIN domain-containing protein f...  76.6    1e-12
gi|15841594|ref|NP_336631.1|  hypothetical protein MT2163 [Mycoba...  75.9    2e-12
gi|15609240|ref|NP_216619.1|  hypothetical protein Rv2103c [Mycob...  75.9    2e-12
gi|15608382|ref|NP_215758.1|  hypothetical protein Rv1242 [Mycoba...  75.5    2e-12
gi|289758220|ref|ZP_06517598.1|  conserved hypothetical protein [...  75.5    2e-12
gi|320105317|ref|YP_004180907.1|  PIN domain-containing protein f...  75.1    4e-12
gi|229822546|ref|YP_002884072.1|  PIN domain-containing protein f...  73.9    7e-12
gi|307084750|ref|ZP_07493863.1|  toxin [Mycobacterium tuberculosi...  73.6    8e-12
gi|333990439|ref|YP_004523053.1|  hypothetical protein JDM601_179...  73.2    1e-11
gi|289573902|ref|ZP_06454129.1|  toxin [Mycobacterium tuberculosi...  72.8    2e-11
gi|294054235|ref|YP_003547893.1|  PIN domain-containing protein f...  71.6    4e-11
gi|240168912|ref|ZP_04747571.1|  hypothetical protein MkanA1_0634...  70.5    8e-11
gi|240170675|ref|ZP_04749334.1|  PIN domain protein family protei...  67.0    9e-10
gi|289750699|ref|ZP_06510077.1|  conserved hypothetical protein [...  66.2    1e-09
gi|322435687|ref|YP_004217899.1|  PIN domain protein family prote...  63.2    1e-08
gi|284122509|ref|ZP_06386855.1|  PIN domain family protein [Candi...  62.8    2e-08
gi|302542963|ref|ZP_07295305.1|  putative toxin-antitoxin system,...  60.1    9e-08
gi|167967876|ref|ZP_02550153.1|  hypothetical protein MtubH3_0751...  60.1    1e-07
gi|258593476|emb|CBE69815.1|  conserved protein of unknown functi...  58.2    4e-07
gi|258593480|emb|CBE69819.1|  Conserved membrane protein [NC10 ba...  52.4    2e-05
gi|340628670|ref|YP_004747122.1|  hypothetical protein MCAN_37181...  48.1    5e-04
gi|15610833|ref|NP_218214.1|  hypothetical protein Rv3697c [Mycob...  47.8    5e-04
gi|31794868|ref|NP_857361.1|  hypothetical protein Mb3723c [Mycob...  47.0    0.001
gi|312622997|ref|YP_004024610.1|  PilT protein domain-containing ...  46.6    0.001


>gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycobacterium tuberculosis H37Rv]
 gi|15839658|ref|NP_334695.1| hypothetical protein MT0289 [Mycobacterium tuberculosis CDC1551]
 gi|31791455|ref|NP_853948.1| hypothetical protein Mb0283c [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score =  281 bits (719),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC
Sbjct  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARFASVRHIRPPI
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculosis KZN 1435]
 gi|289552530|ref|ZP_06441740.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297632757|ref|ZP_06950537.1| toxin [Mycobacterium tuberculosis KZN 4207]
 gi|297729731|ref|ZP_06958849.1| toxin [Mycobacterium tuberculosis KZN R506]
 gi|313657057|ref|ZP_07813937.1| toxin [Mycobacterium tuberculosis KZN V2475]
 gi|253318705|gb|ACT23308.1| toxin [Mycobacterium tuberculosis KZN 1435]
 gi|289437162|gb|EFD19655.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328456989|gb|AEB02412.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=142

 Score =  279 bits (714),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRADAFAFVEAV AQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC
Sbjct  61   SPRADAFAFVEAVTAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARFASVRHIRPPI
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
 gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142

 Score =  279 bits (714),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVL AIAVEHHC
Sbjct  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARFASVRHIRPPI
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841 [Mycobacterium canettii CIPT 
140010059]
 gi|340003503|emb|CCC42624.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score =  272 bits (695),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 136/142 (96%), Positives = 139/142 (98%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRADAFAFV+AV AQPHHLPTSPGPRHL+LLRKLCDEADASGDLIPDAVL AIAVEHHC
Sbjct  61   SPRADAFAFVDAVTAQPHHLPTSPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARFASVRHIRPPI
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
 10 more sequence titles
 Length=142

 Score =  266 bits (681),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 133/142 (94%), Positives = 137/142 (97%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRA+AFAFVEAV AQPHHLPT+PGPRHLVLLRKLCDEADASGDLIPDAVL AIAV HHC
Sbjct  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARFASVRHIRPP+
Sbjct  121  AVVSLDRDFARFASVRHIRPPL  142


>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
 gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
 gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score =  266 bits (679),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 132/142 (93%), Positives = 137/142 (97%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRA+AFAFVEAV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAV HHC
Sbjct  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARFASVRHIRPP+
Sbjct  121  AVVSLDRDFARFASVRHIRPPL  142


>gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521 [Mycobacterium canettii CIPT 
140010059]
 gi|340003957|emb|CCC43092.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score =  264 bits (674),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 130/142 (92%), Positives = 136/142 (96%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SPRA AFAF++AV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAVEHHC
Sbjct  61   SPRAAAFAFIDAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            AVVSLDRDFARF SVRHIRPP+
Sbjct  121  AVVSLDRDFARFTSVRHIRPPL  142


>gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289685000|gb|EFD52488.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=131

 Score =  248 bits (633),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 123/131 (94%), Positives = 127/131 (97%), Gaps = 0/131 (0%)

Query  12   AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPRADAFAFVE  71
            AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIPSPRA+AFAFVE
Sbjct  1    AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVE  60

Query  72   AVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVVSLDRDFAR  131
            AV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAV HHCAVVSLDRDFAR
Sbjct  61   AVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFAR  120

Query  132  FASVRHIRPPI  142
            FASVRHIRPP+
Sbjct  121  FASVRHIRPPL  131


>gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712400|gb|EFD76412.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=104

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 95/104 (92%), Positives = 100/104 (97%), Gaps = 0/104 (0%)

Query  39   VPNLVWASFLRLTTNRRIFEIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDE  98
            +PNLVWASFLRL TNRRIFEIPSPRA+AFAFVEAV AQPHHLPT+PGPRHL+LLRKLCDE
Sbjct  1    MPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDE  60

Query  99   ADASGDLIPDAVLGAIAVEHHCAVVSLDRDFARFASVRHIRPPI  142
            ADASGDLIPDAVL AIAV HHCAVVSLDRDFARFASVRHIRPP+
Sbjct  61   ADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL  104


>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
 gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 55/136 (41%), Positives = 80/136 (59%), Gaps = 0/136 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+DVNVL+ AHR D  +H   R W +  +     + V +LV + F+R+ T+ R+FE P
Sbjct  1    MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRVFERP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +P   A AFV  V +QP  +P  PGPRH  +  KL   + A G+L+PDA   A+A+E  C
Sbjct  61   TPLDRALAFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHAALAIEAGC  120

Query  121  AVVSLDRDFARFASVR  136
              ++ D+ F RF  +R
Sbjct  121  DWITTDKGFLRFPGLR  136


>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans 
MPOB]
 gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 58/140 (42%), Positives = 80/140 (58%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+DVN+LL A   D P H   R W + +L+  +   +P +V  +FLR+TTN RIFE P
Sbjct  1    MILVDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                 A A+VE   AQP     +PG  H ++LR L  ++   G+L  DA + A+A+E+  
Sbjct  61   LSVERAVAYVEEWLAQPVATTVTPGKSHWMILRNLLLDSGTGGNLTTDAHIAALAIEYGH  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             V S D DF RF  +RHI P
Sbjct  121  TVYSTDNDFKRFQGLRHINP  140


>gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941 [Mycobacterium canettii CIPT 
140010059]
 gi|157382523|gb|ABV48756.1| Rv2872 [Mycobacterium canettii]
 gi|340006055|emb|CCC45225.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=147

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 58/140 (42%), Positives = 82/140 (59%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M  +DVNVL+ AHR D   H   R   +RL   D+P  +P+ V A F+R+ TNRR+F  P
Sbjct  1    MLCVDVNVLVYAHRADLREHTDYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +   DA+  V+A+ A P  +   PG RH +  R+L  + DA+G+ I DA L A A+E++ 
Sbjct  61   TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
              +S DR FARF  +R   P
Sbjct  121  TWLSADRGFARFRRLRWRHP  140


>gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycobacterium tuberculosis H37Rv]
 gi|15842413|ref|NP_337450.1| hypothetical protein MT2939 [Mycobacterium tuberculosis CDC1551]
 gi|31794049|ref|NP_856542.1| hypothetical protein Mb2897 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=147

 Score =  105 bits (262),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 58/140 (42%), Positives = 82/140 (59%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M  +DVNVL+ AHR D   H   R   +RL   D+P  +P+ V A F+R+ TNRR+F  P
Sbjct  1    MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +   DA+  V+A+ A P  +   PG RH +  R+L  + DA+G+ I DA L A A+E++ 
Sbjct  61   TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
              +S DR FARF  +R   P
Sbjct  121  TWLSADRGFARFRRLRWRHP  140


>gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991246|ref|YP_002645935.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121494402|emb|CAL72883.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774361|dbj|BAH27167.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602792|emb|CCC65470.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=147

 Score =  103 bits (258),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 57/140 (41%), Positives = 81/140 (58%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M  +DVNVL+ AHR D   H   R   +RL   D+P  +P+ V A F+R+ TNRR+F  P
Sbjct  1    MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +   DA+  V+ + A P  +   PG RH +  R+L  + DA+G+ I DA L A A+E++ 
Sbjct  61   TSPQDAWQAVDTLLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
              +S DR FARF  +R   P
Sbjct  121  TWLSADRGFARFRRLRWRHP  140


>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=144

 Score =  102 bits (255),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 51/140 (37%), Positives = 81/140 (58%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+D+N L+ A R D P H     W ++L+  D  F + ++V + F+R+ T+ R+F  P
Sbjct  1    MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVFSPP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            SP  DA  ++E + AQP+ +  +PG RH  +  +LC    A G+++PDA L A+A+E   
Sbjct  61   SPLDDALEYLEDIRAQPNCVILAPGERHWRIFLQLCHAVGAKGNVVPDAYLAALAIESGS  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + + DR  ARF  +R   P
Sbjct  121  ELATADRGVARFPGLRWRHP  140


>gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_20640 [Mycobacterium kansasii ATCC 
12478]
 gi|157382510|gb|ABV48746.1| Rv2872 [Mycobacterium kansasii ATCC 12478]
Length=143

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 65/143 (46%), Positives = 87/143 (61%), Gaps = 6/143 (4%)

Query  1    MFLIDVNVLLAAHRGD---HPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIF  57
            M  +DVNVL+ AHR D   HPN+R V    +RL   D+P  +P+ V A F+R+ TNRRIF
Sbjct  1    MHCVDVNVLVNAHRADLREHPNYRDV---LERLANGDEPLGLPDSVLAGFVRVVTNRRIF  57

Query  58   EIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE  117
              P+ + DA+  V+A+ A P  +   PG RH  L R+L  + DASG+ I DA L A A+E
Sbjct  58   VEPTSQPDAWQAVDALLAAPAAIRLKPGERHWTLFRQLAADIDASGNDIADAYLAAYALE  117

Query  118  HHCAVVSLDRDFARFASVRHIRP  140
            ++   VS DR FARF  +R   P
Sbjct  118  NNATWVSADRGFARFGRLRWRHP  140


>gi|297567544|ref|YP_003686516.1| PIN domain-containing protein family protein [Meiothermus silvanus 
DSM 9946]
 gi|296851993|gb|ADH65008.1| PIN domain protein family protein [Meiothermus silvanus DSM 9946]
Length=143

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 51/140 (37%), Positives = 75/140 (54%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M+++DVNVL+ A R D P H     W    LA  +   VP+ V  + LR+ T   + ++ 
Sbjct  1    MYVLDVNVLIYAFRRDSPQHPACYAWLSGSLATGESVGVPSWVELAVLRINTLPSLGDLA  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +P  D  AF+  + + P +    PGP+HL +   LC      G+ + DA + A+A+EH  
Sbjct  61   APLKDVLAFLYELRSHPSYQLVEPGPKHLPIFEDLCQRLGLRGNDLNDAFIAALAIEHGA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             +VS DR FARF  VR I P
Sbjct  121  TLVSTDRGFARFPGVRRIDP  140


>gi|296130776|ref|YP_003638026.1| PIN domain protein family protein [Cellulomonas flavigena DSM 
20109]
 gi|296022591|gb|ADG75827.1| PIN domain protein family protein [Cellulomonas flavigena DSM 
20109]
Length=143

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 55/136 (41%), Positives = 76/136 (56%), Gaps = 0/136 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L DVNVL+ A R D P H  +R W +  + A +P  + + V    +R+ T+ R+F  P
Sbjct  1    MILPDVNVLVGALRADSPRHDALRRWLEAAVDAPEPLGLTDAVLGGTVRVLTHPRVFARP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +P   A   V  + A P  +  +PG RH  ++  LC  ADA G+L+ DA   A+AVEH  
Sbjct  61   TPLRTALDLVGDLRAHPGTVRVAPGDRHWEIVADLCRAADARGNLVADAQHAAVAVEHGA  120

Query  121  AVVSLDRDFARFASVR  136
              VS DRDFARF  +R
Sbjct  121  TWVSQDRDFARFPGLR  136


>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 53/140 (38%), Positives = 77/140 (55%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+D N+LL A   D P H++ R W ++ L+ D+P      V  +FLRLTT   +F  P
Sbjct  1    MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                 AF  V +  A+P  +    GPRHL ++ +L      +G+L  DA LGA+A+E + 
Sbjct  61   LSPDQAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGTAGNLTSDAHLGALAIEQNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DFARF+ V  + P
Sbjct  121  QLCSCDSDFARFSGVDWLNP  140


>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=145

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 57/140 (41%), Positives = 75/140 (54%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M LID N+L+ AH    P H     W D  L+A     +P     +FLRLTTN R+FE P
Sbjct  1    MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
               A+A+A VEA  + P     +P   H  LLR L  +  A+ +LIPDA L A+A+EH  
Sbjct  61   LTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPDAHLAALALEHGL  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DF RF  ++   P
Sbjct  121  TLCSTDGDFGRFPRLKWRNP  140


>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
 gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 52/143 (37%), Positives = 81/143 (57%), Gaps = 6/143 (4%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWAS---FLRLTTNRRIF  57
            M + DVN+L+ A+  D P+H   + W++ LL++++P  +P   WAS   F+RL T+R + 
Sbjct  1    MIVPDVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLP---WASALGFIRLMTHRAVL  57

Query  58   EIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE  117
             +P   + A  +V + +++ +     PGPRHL LL  L      +G L  D  L A+A+E
Sbjct  58   VMPVEPSRAVEYVRSWHSRSNVSALEPGPRHLELLDGLFAALGTAGKLTTDTHLAALAIE  117

Query  118  HHCAVVSLDRDFARFASVRHIRP  140
            H C + S D DFARF  +R   P
Sbjct  118  HQCVLCSNDGDFARFPGLRWRNP  140


>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium 
sp.]
Length=143

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 47/140 (34%), Positives = 73/140 (53%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+D N+LL A     P H+  R W+D  L+  +P  +   V ++F+R+ TN R+FE P
Sbjct  1    MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEHP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
             P   A   V++   QP      P  +H  +   +     A  +L+ DA L A+A+E+ C
Sbjct  61   LPLEQALTRVQSWLDQPCTRVIQPTEQHWAVFMMMLKGGQAVANLVTDAHLAALAIENGC  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DF+RF  ++ I P
Sbjct  121  DLASTDSDFSRFPKLKWINP  140


>gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
 gi|300534314|gb|EFK55373.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
Length=145

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 47/139 (34%), Positives = 71/139 (52%), Gaps = 0/139 (0%)

Query  2    FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS  61
             +ID NVL+ A   +  +      W D  L   +    P +   +F R+TTN  +F +P 
Sbjct  1    MIIDANVLIYASDENATHFAEASSWLDGALRGTERVGFPWICLLAFQRITTNPALFAMPL  60

Query  62   PRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCA  121
              + A  ++E     P+     PGP+H  +LR L  ++DA G L+ DA L A+A+EH  +
Sbjct  61   TPSRASDYIENWLKHPNSWVPQPGPQHASILRTLTVDSDARGTLVTDAHLAALAIEHGTS  120

Query  122  VVSLDRDFARFASVRHIRP  140
            + S D DFARF  +R   P
Sbjct  121  ICSFDSDFARFQGLRWFSP  139


>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
 gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 54/137 (40%), Positives = 74/137 (55%), Gaps = 16/137 (11%)

Query  5    DVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNL---VWASFLRLTTNRRIFEIPS  61
            DVN+L+AA R DHP+H   R W ++ +A      +  L   V ASFLRL T+ +IF  P+
Sbjct  4    DVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFVNPT  63

Query  62   PRADAFAFVEAVNAQPHHLPTSPGPRHLVL------LRKLCDEADASGDLIPDAVLGAIA  115
            P A+A  F++A+ A       SPG    VL      LR+LC +   + + +PDA L A A
Sbjct  64   PMAEALRFIDALLA-------SPGVEQAVLGAEWPALRQLCADKALAANDVPDAWLAAAA  116

Query  116  VEHHCAVVSLDRDFARF  132
            +     VVS D DF R 
Sbjct  117  IHQGEHVVSFDADFKRL  133


>gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291 [Mycobacterium canettii CIPT 
140010059]
 gi|340005305|emb|CCC44461.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=144

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 50/141 (36%), Positives = 69/141 (49%), Gaps = 0/141 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M ++D NVLL A      +H+    W D  L+  D      +   SF+RL T   +F  P
Sbjct  1    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLSFVRLATKVGLFPRP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
             PR  A   V    A P  +  +P  RH  +L ++        +L+ DA L A+AVEH  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RFA VR  +PP
Sbjct  121  SIVSYDSDFGRFAGVRWDQPP  141


>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 49/139 (36%), Positives = 70/139 (51%), Gaps = 6/139 (4%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWA---SFLRLTTNRRIF  57
            M ++D NVLL A      +H   R W D  L+ +D   V  L W    +F+RLTT   +F
Sbjct  1    MRIVDANVLLYAVNSSSEHHDASRRWLDGALSGND---VVGLAWVPMLAFVRLTTKHGLF  57

Query  58   EIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE  117
              P    DA A +    + P  +  +P  RH  +L  L  +    G+L+ DA L A+A+E
Sbjct  58   PSPLTPDDAMARITDWCSAPGAVIVNPTARHADVLATLLSDVGTGGNLVNDAHLAALALE  117

Query  118  HHCAVVSLDRDFARFASVR  136
            H   +VS D DF RF+ V+
Sbjct  118  HRARIVSYDNDFGRFSGVQ  136


>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp. 
JDM601]
 gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 44/139 (32%), Positives = 70/139 (51%), Gaps = 0/139 (0%)

Query  2    FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS  61
             L+D N+LL A   D  ++     W +  L  D+   +P     +FLR+ T+ R+ E P 
Sbjct  1    MLLDANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPL  60

Query  62   PRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCA  121
            P ++A+++V    A P             +   +C +AD +G+L+PDA L A+A+EH   
Sbjct  61   PPSEAWSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQLAALAIEHGVE  120

Query  122  VVSLDRDFARFASVRHIRP  140
            + S D DF RF  +R   P
Sbjct  121  LASADSDFQRFPGLRWFNP  139


>gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
 gi|13881843|gb|AAK46445.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
Length=145

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 0/141 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M ++D NVLL A      +H+    W D  L+  D      +   +F+RL T   +F  P
Sbjct  2    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  61

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
             PR  A   V    A P  +  +P  RH  +L ++        +L+ DA L A+AVEH  
Sbjct  62   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  121

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RF  VR  +PP
Sbjct  122  SIVSYDSDFGRFEGVRWDQPP  142


>gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycobacterium tuberculosis H37Rv]
 gi|31793285|ref|NP_855778.1| hypothetical protein Mb2129c [Mycobacterium bovis AF2122/97]
 gi|121637987|ref|YP_978211.1| hypothetical protein BCG_2122c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 67 more sequence titles
 Length=144

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 0/141 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M ++D NVLL A      +H+    W D  L+  D      +   +F+RL T   +F  P
Sbjct  1    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
             PR  A   V    A P  +  +P  RH  +L ++        +L+ DA L A+AVEH  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RF  VR  +PP
Sbjct  121  SIVSYDSDFGRFEGVRWDQPP  141


>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
 gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
 gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=143

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/142 (34%), Positives = 68/142 (48%), Gaps = 4/142 (2%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFE  58
            M + D+N+LL A     P HR    W+   +        T P L    FLR+ T+ R+  
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA  58

Query  59   IPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEH  118
             P P ADA A+V    +QP+    + GPRHL +   L D+   +  L  D  L A  +E+
Sbjct  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY  118

Query  119  HCAVVSLDRDFARFASVRHIRP  140
               + S D DFARFA ++   P
Sbjct  119  DAEIHSSDTDFARFADLKWTDP  140


>gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294997046|ref|ZP_06802737.1| hypothetical protein Mtub2_21708 [Mycobacterium tuberculosis 
210]
 gi|289713784|gb|EFD77796.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326903715|gb|EGE50648.1| toxin [Mycobacterium tuberculosis W-148]
 gi|339295024|gb|AEJ47135.1| hypothetical protein CCDC5079_1945 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298648|gb|AEJ50758.1| hypothetical protein CCDC5180_1921 [Mycobacterium tuberculosis 
CCDC5180]
Length=144

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 0/141 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M ++D NVLL A      +H+    W D  L+  D      +   +F+RL T   +F  P
Sbjct  1    MKIVDANVLLYAVNTASEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
             PR  A   V    A P  +  +P  RH  +L ++        +L+ DA L A+AVEH  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RF  VR  +PP
Sbjct  121  SIVSYDSDFGRFEGVRWDQPP  141


>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145

 Score = 75.1 bits (183),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 42/143 (30%), Positives = 73/143 (52%), Gaps = 6/143 (4%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+D N+L+ A+    P+H+    W +R+ ++ +P  +P     +FLR+ T++    +P
Sbjct  1    MILLDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMAFLRIMTHQ---ALP  57

Query  61   SPR---ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE  117
             PR    +    V+   +  H      G  H   LR+   +  A   L+ D+ L A+A+E
Sbjct  58   GPRFSMEEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAIE  117

Query  118  HHCAVVSLDRDFARFASVRHIRP  140
            +   + S+DRDFARF  +R + P
Sbjct  118  NGATLCSVDRDFARFPGLRWVDP  140


>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae 
DSM 12333]
 gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM 
12333]
Length=143

 Score = 73.9 bits (180),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 46/132 (35%), Positives = 67/132 (51%), Gaps = 2/132 (1%)

Query  2    FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS  61
             ++D NVLL A     P HR  + W +  L+      +P     +F R+ ++ R    P 
Sbjct  1    MIVDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPL  60

Query  62   PRADAFAFV-EAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                A+AF+ E + A P  +PT PG  H  +L +L    D  G+L+ DA L A+A+EH  
Sbjct  61   TPGAAWAFITEWLRADPAWIPT-PGDGHAAILGRLLTAGDLRGNLVTDAHLAALALEHGV  119

Query  121  AVVSLDRDFARF  132
             + S D DFARF
Sbjct  120  GICSFDSDFARF  131


>gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|308365680|gb|EFP54531.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=143

 Score = 73.6 bits (179),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 47/142 (34%), Positives = 68/142 (48%), Gaps = 0/142 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M ++D NVLL A      +H+    W D  L+  D      +   +F+RL T   +F  P
Sbjct  1    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
             PR  A   V    A P  +  +P  RH  +L ++        +L+ DA L A+AVEH  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPPI  142
            ++VS D DF RF  VR  +P +
Sbjct  121  SIVSYDSDFGRFEGVRWDQPAL  142


>gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_1799 [Mycobacterium sp. JDM601]
 gi|333486407|gb|AEF35799.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 67/140 (48%), Gaps = 1/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M ++D NVLL A      +H     W DR L+  D      +   +F+RL+T   +F  P
Sbjct  1    MKIVDANVLLYAVNTAAEHHDASLRWLDRALSGADTVGFAWVPLLAFVRLSTKEGLFPHP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                DA   V    A    +  +P PRH  +L  L     A G+L+ DA L A+A+EH  
Sbjct  61   LRPEDAVDRVAEWTAASSAVVVNPTPRHADILTGLLARVGAGGNLVNDAHLAALAIEHRG  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             +VS D DF RF  +R  RP
Sbjct  121  GIVSYDADFGRF-GIRWDRP  139


>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
 gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 47/142 (34%), Positives = 67/142 (48%), Gaps = 4/142 (2%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFE  58
            M + D+N+LL A     P HR    W+   +        T P L    FLR+ T+ R+  
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA  58

Query  59   IPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEH  118
             P P ADA A+V    +QP+    + GPRHL +   L D+   +     D  L A  +E+
Sbjct  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHRTTDVQLAAYGIEY  118

Query  119  HCAVVSLDRDFARFASVRHIRP  140
               + S D DFARFA ++   P
Sbjct  119  DAEIHSSDTDFARFADLKWTDP  140


>gi|294054235|ref|YP_003547893.1| PIN domain-containing protein family protein [Coraliomargarita 
akajimensis DSM 45221]
 gi|293613568|gb|ADE53723.1| PIN domain protein family protein [Coraliomargarita akajimensis 
DSM 45221]
Length=142

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 43/140 (31%), Positives = 66/140 (48%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L D N+L+ AH     +H T + W++  L+  +   +P +V  +F R+ T+ +I E P
Sbjct  1    MILPDANLLIYAHDHSSRDHATAKDWWETALSGSESIGIPWIVVLAFTRILTHPQICEAP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                     VE     P         R L +   L ++A   G+L  DA++ A A EH  
Sbjct  61   LGVTQVRELVEQWFDSPQVRLIQTSNRALPVFFDLLEDAGMGGNLSTDALIAAHAREHSA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S DRDF RF  +R + P
Sbjct  121  VIYSCDRDFDRFMGIRWVNP  140


>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC 
12478]
Length=143

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 46/140 (33%), Positives = 65/140 (47%), Gaps = 0/140 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M + DVN+LL A     P HR    W+   + + +   +       FLR+ TN RI   P
Sbjct  1    MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARILTEP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                +A A+V     QP+     P  RHL L   L ++   + +L  D  L A A+EH+ 
Sbjct  61   LSATEAVAYVRDWLTQPNVDLLIPSARHLDLALGLLEQLGTASNLTTDVQLAAYAIEHNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DFARFA +    P
Sbjct  121  EMHSSDADFARFAGLAWTNP  140


>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC 
12478]
Length=142

 Score = 67.0 bits (162),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 44/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query  2    FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS  61
             ++D N+LL A      ++     W + +LA D    +P     +FLR+ T+ R+ E P 
Sbjct  1    MIVDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPL  60

Query  62   PRADAFAFVEAVNAQPH-HLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
                A+ +V    A P   +P +      V  R L ++ + +G+L+PDA L A+AVEH  
Sbjct  61   SGPAAWRYVAEWLAVPVVWIPPATETTARVYAR-LSEQVEITGNLVPDAQLAALAVEHGV  119

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DF RF  +R + P
Sbjct  120  ELASADTDFMRFPGLRWMNP  139


>gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691286|gb|EFD58715.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=136

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 43/133 (33%), Positives = 62/133 (47%), Gaps = 0/133 (0%)

Query  9    LLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPRADAFA  68
            +L A      +H+    W D  L+  D      +   +F+RL T   +F  P PR  A  
Sbjct  1    MLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAIT  60

Query  69   FVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVVSLDRD  128
             V    A P  +  +P  RH  +L ++        +L+ DA L A+AVEH  ++VS D D
Sbjct  61   QVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASIVSYDSD  120

Query  129  FARFASVRHIRPP  141
            F RF  VR  +PP
Sbjct  121  FGRFEGVRWDQPP  133


>gi|322435687|ref|YP_004217899.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163414|gb|ADW69119.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
Length=143

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 50/141 (36%), Positives = 70/141 (50%), Gaps = 1/141 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLA-ADDPFTVPNLVWASFLRLTTNRRIFEI  59
            M ++D N+LL A+      H+  R + D + +   +   +P     +FLRL TN  +   
Sbjct  1    MIVLDANLLLYAYTARSSFHQPARSYLDHIFSDTSESIGIPIQCATAFLRLITNPAVTGA  60

Query  60   PSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHH  119
                 DA A VE   A PH     PG  H   L+ +     A+GDLI DA + A A+E+ 
Sbjct  61   RIAMDDAIARVEEWQALPHVRILYPGEEHWQFLKTVTRNGHATGDLIADAAIAAFALEYG  120

Query  120  CAVVSLDRDFARFASVRHIRP  140
              V S DRDFARF+S+R   P
Sbjct  121  AVVHSNDRDFARFSSIRWHNP  141


>gi|284122509|ref|ZP_06386855.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829353|gb|EFC33749.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
Length=143

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/135 (28%), Positives = 63/135 (47%), Gaps = 1/135 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M  +D NVL+ AHR +   H         L     P+ +P      FLR+ T+ R+F  P
Sbjct  1    MRALDTNVLIHAHRKEMAKHAEAGQLLRNLAEGTKPWGLPVFCLGEFLRVVTHHRVFTPP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            +   +A A ++ +   P      PG R+         +  A+G+++ DA + A+ +EH  
Sbjct  61   TTIQNALAALDGLLQSPTVRLLLPGDRYWSCFHNAISQGQATGNVVFDAQIVAVCLEHGI  120

Query  121  A-VVSLDRDFARFAS  134
              ++S DR+  RF +
Sbjct  121  DFLISEDRELKRFEN  135


>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces hygroscopicus ATCC 53653]
 gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces himastatinicus ATCC 53653]
Length=144

 Score = 60.1 bits (144),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 38/141 (27%), Positives = 65/141 (47%), Gaps = 1/141 (0%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M  +D N+L+ AHR D P H         L  A  P+ +P      F  + T+ RI++ P
Sbjct  1    MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120
            S    A A ++A  + P  +  S    +   LR++ ++   +G ++ D  + A+      
Sbjct  61   STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQMLEDGKVAGPMVHDGRIAALCANSGV  120

Query  121  -AVVSLDRDFARFASVRHIRP  140
              + S DRDF+RF ++    P
Sbjct  121  RELWSADRDFSRFPALTTRNP  141


>gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_07513 [Mycobacterium tuberculosis 
H37Ra]
Length=123

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 39/124 (32%), Positives = 57/124 (46%), Gaps = 4/124 (3%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFE  58
            M + D+N+LL A     P HR    W+   +        T P L    FLR+ T+ R+  
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA  58

Query  59   IPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEH  118
             P P ADA A+V    +QP+    + GPRHL +   L D+   +  L  D  L A  +E+
Sbjct  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY  118

Query  119  HCAV  122
               +
Sbjct  119  DAEI  122


>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=144

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 45/142 (32%), Positives = 66/142 (47%), Gaps = 2/142 (1%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            MF+ D NVL+ A   D P HR               + +   +   FLR+TT+ R+F  P
Sbjct  1    MFVSDTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQP  60

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEA-DASGDLIPDAVLGAIAVEHH  119
             P A A+ F+EAV A P      P  RH  ++ ++  E    +G++I DA    +  EH 
Sbjct  61   WPAARAWEFIEAVLASPGLSLLLPTDRHATVVAEVFGELPHLAGNVIHDAHTAILMREHG  120

Query  120  C-AVVSLDRDFARFASVRHIRP  140
               + + D DF RF  +  I P
Sbjct  121  IRRIYTRDTDFHRFPFLEPIDP  142


>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 62/140 (45%), Gaps = 1/140 (0%)

Query  2    FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS  61
            + +DVNVLL A     P H     + +      D F +      ++LR+ T  RIF  P 
Sbjct  3    YSVDVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPL  62

Query  62   PRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCA  121
              +DA   VE++ + P     S G   L   R +       G+L+PDA L  +  +H   
Sbjct  63   SPSDALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVG  122

Query  122  -VVSLDRDFARFASVRHIRP  140
             + + DRDF +F  +  + P
Sbjct  123  RLYTADRDFRKFDFLEVVDP  142


>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT 
140010059]
 gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT 
140010059]
Length=145

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)

Query  4    IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR  63
             DV+VL+ A     P H   +   +R LA      +   V   +LR+ T+  +   P   
Sbjct  5    FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP  64

Query  64   ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV  123
              A   +E   ++PH            + R++ D     G+L+PDA L A+   H  A +
Sbjct  65   EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI  124

Query  124  -SLDRDFARFASVRHIRPPI  142
             S DRDF +F  +R IR P 
Sbjct  125  WSHDRDFRKFEGIR-IRDPF  143


>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
 gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
 gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
 62 more sequence titles
 Length=145

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)

Query  4    IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR  63
             DV+VL+ A     P H   +   +R LA      +   V   +LR+ T+  +   P   
Sbjct  5    FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP  64

Query  64   ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV  123
              A   +E   ++PH            + R++ D     G+L+PDA L A+   H  A +
Sbjct  65   EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI  124

Query  124  -SLDRDFARFASVRHIRPPI  142
             S DRDF +F  +R IR P 
Sbjct  125  WSHDRDFRKFEGIR-IRDPF  143


>gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycobacterium bovis AF2122/97]
 gi|121639611|ref|YP_979835.1| hypothetical protein BCG_3756c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992107|ref|YP_002646796.1| hypothetical protein JTY_3757 [Mycobacterium bovis BCG str. Tokyo 
172]
 10 more sequence titles
 Length=145

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)

Query  4    IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR  63
             DV+VL+ A     P H   +   +R LA      +   V   +LR+ T+  +   P   
Sbjct  5    FDVDVLVHATHRASPFHDKAKTLVERFLARPGLVYLLWPVALGYLRVVTHPTLLGAPLAP  64

Query  64   ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV  123
              A   +E   ++PH            + R++ D     G+L+PDA L A+   H  A +
Sbjct  65   EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI  124

Query  124  -SLDRDFARFASVRHIRPPI  142
             S DRDF +F  +R IR P 
Sbjct  125  WSHDRDFRKFEGIR-IRDPF  143


>gi|312622997|ref|YP_004024610.1| PilT protein domain-containing protein [Caldicellulosiruptor 
kronotskyensis 2002]
 gi|312203464|gb|ADQ46791.1| PilT protein domain protein [Caldicellulosiruptor kronotskyensis 
2002]
Length=132

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 32/137 (24%), Positives = 64/137 (47%), Gaps = 14/137 (10%)

Query  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60
            M L+D +VL+   +G+  N +  +  F+ +L    PF + +L++   L+   N + FE+ 
Sbjct  1    MILVDTSVLIDFFKGN-TNEKVKK--FEWVLTNKIPFGITHLIYQEILQGAKNEKEFELL  57

Query  61   SPRADAFAFVEAVNAQPHHLPTSPGPRH--LVLLRKLCDEADASGDLIPDAVLGAIAVEH  118
                      E ++ QP +  T     +    LL   C +   +     D ++  IA+E+
Sbjct  58   K---------EYLSTQPFYELTKGKKSYEEAALLYFKCKKRGINLKSTVDVIIAQIAIEN  108

Query  119  HCAVVSLDRDFARFASV  135
            +  ++  DRD+++ A V
Sbjct  109  NLYLLHNDRDYSKIAKV  125



Lambda     K      H
   0.328    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129798780480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40