BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0277c
Length=142
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycob... 281 2e-74
gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculos... 279 8e-74
gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosi... 279 9e-74
gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841... 272 1e-71
gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Myc... 266 6e-70
gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycoba... 266 1e-69
gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521... 264 4e-69
gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [... 248 2e-64
gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [... 192 1e-47
gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 ... 112 2e-23
gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Sy... 111 4e-23
gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941... 105 2e-21
gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycoba... 105 3e-21
gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Myc... 103 7e-21
gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [... 102 1e-20
gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_2064... 101 4e-20
gi|297567544|ref|YP_003686516.1| PIN domain-containing protein f... 99.4 2e-19
gi|296130776|ref|YP_003638026.1| PIN domain protein family prote... 99.0 2e-19
gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Ca... 96.7 1e-18
gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [... 94.7 4e-18
gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 ... 93.6 9e-18
gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [un... 88.2 3e-16
gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacte... 85.9 2e-15
gi|160898241|ref|YP_001563823.1| PilT domain-containing protein ... 81.3 5e-14
gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291... 79.0 2e-13
gi|145221522|ref|YP_001132200.1| PilT domain-containing protein ... 78.2 4e-13
gi|333991903|ref|YP_004524517.1| PIN domain-containing protein f... 76.6 1e-12
gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycoba... 75.9 2e-12
gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycob... 75.9 2e-12
gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycoba... 75.5 2e-12
gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [... 75.5 2e-12
gi|320105317|ref|YP_004180907.1| PIN domain-containing protein f... 75.1 4e-12
gi|229822546|ref|YP_002884072.1| PIN domain-containing protein f... 73.9 7e-12
gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosi... 73.6 8e-12
gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_179... 73.2 1e-11
gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosi... 72.8 2e-11
gi|294054235|ref|YP_003547893.1| PIN domain-containing protein f... 71.6 4e-11
gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_0634... 70.5 8e-11
gi|240170675|ref|ZP_04749334.1| PIN domain protein family protei... 67.0 9e-10
gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [... 66.2 1e-09
gi|322435687|ref|YP_004217899.1| PIN domain protein family prote... 63.2 1e-08
gi|284122509|ref|ZP_06386855.1| PIN domain family protein [Candi... 62.8 2e-08
gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system,... 60.1 9e-08
gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_0751... 60.1 1e-07
gi|258593476|emb|CBE69815.1| conserved protein of unknown functi... 58.2 4e-07
gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 ba... 52.4 2e-05
gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181... 48.1 5e-04
gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycob... 47.8 5e-04
gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycob... 47.0 0.001
gi|312622997|ref|YP_004024610.1| PilT protein domain-containing ... 46.6 0.001
>gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycobacterium tuberculosis H37Rv]
gi|15839658|ref|NP_334695.1| hypothetical protein MT0289 [Mycobacterium tuberculosis CDC1551]
gi|31791455|ref|NP_853948.1| hypothetical protein Mb0283c [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC
Sbjct 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARFASVRHIRPPI
Sbjct 121 AVVSLDRDFARFASVRHIRPPI 142
>gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|289552530|ref|ZP_06441740.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|297632757|ref|ZP_06950537.1| toxin [Mycobacterium tuberculosis KZN 4207]
gi|297729731|ref|ZP_06958849.1| toxin [Mycobacterium tuberculosis KZN R506]
gi|313657057|ref|ZP_07813937.1| toxin [Mycobacterium tuberculosis KZN V2475]
gi|253318705|gb|ACT23308.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|289437162|gb|EFD19655.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328456989|gb|AEB02412.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=142
Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 141/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRADAFAFVEAV AQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC
Sbjct 61 SPRADAFAFVEAVTAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARFASVRHIRPPI
Sbjct 121 AVVSLDRDFARFASVRHIRPPI 142
>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142
Score = 279 bits (714), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 141/142 (99%), Positives = 141/142 (99%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVL AIAVEHHC
Sbjct 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVEHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARFASVRHIRPPI
Sbjct 121 AVVSLDRDFARFASVRHIRPPI 142
>gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841 [Mycobacterium canettii CIPT
140010059]
gi|340003503|emb|CCC42624.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/142 (96%), Positives = 139/142 (98%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP
Sbjct 1 MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRADAFAFV+AV AQPHHLPTSPGPRHL+LLRKLCDEADASGDLIPDAVL AIAVEHHC
Sbjct 61 SPRADAFAFVDAVTAQPHHLPTSPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARFASVRHIRPPI
Sbjct 121 AVVSLDRDFARFASVRHIRPPI 142
>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
10 more sequence titles
Length=142
Score = 266 bits (681), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 133/142 (94%), Positives = 137/142 (97%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct 1 MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRA+AFAFVEAV AQPHHLPT+PGPRHLVLLRKLCDEADASGDLIPDAVL AIAV HHC
Sbjct 61 SPRAEAFAFVEAVTAQPHHLPTNPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVGHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARFASVRHIRPP+
Sbjct 121 AVVSLDRDFARFASVRHIRPPL 142
>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/142 (93%), Positives = 137/142 (97%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct 1 MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRA+AFAFVEAV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAV HHC
Sbjct 61 SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARFASVRHIRPP+
Sbjct 121 AVVSLDRDFARFASVRHIRPPL 142
>gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521 [Mycobacterium canettii CIPT
140010059]
gi|340003957|emb|CCC43092.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 130/142 (92%), Positives = 136/142 (96%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct 1 MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SPRA AFAF++AV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAVEHHC
Sbjct 61 SPRAAAFAFIDAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHC 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
AVVSLDRDFARF SVRHIRPP+
Sbjct 121 AVVSLDRDFARFTSVRHIRPPL 142
>gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289685000|gb|EFD52488.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=131
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/131 (94%), Positives = 127/131 (97%), Gaps = 0/131 (0%)
Query 12 AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPRADAFAFVE 71
AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIPSPRA+AFAFVE
Sbjct 1 AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVE 60
Query 72 AVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVVSLDRDFAR 131
AV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAV HHCAVVSLDRDFAR
Sbjct 61 AVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFAR 120
Query 132 FASVRHIRPPI 142
FASVRHIRPP+
Sbjct 121 FASVRHIRPPL 131
>gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289712400|gb|EFD76412.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=104
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/104 (92%), Positives = 100/104 (97%), Gaps = 0/104 (0%)
Query 39 VPNLVWASFLRLTTNRRIFEIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDE 98
+PNLVWASFLRL TNRRIFEIPSPRA+AFAFVEAV AQPHHLPT+PGPRHL+LLRKLCDE
Sbjct 1 MPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDE 60
Query 99 ADASGDLIPDAVLGAIAVEHHCAVVSLDRDFARFASVRHIRPPI 142
ADASGDLIPDAVL AIAV HHCAVVSLDRDFARFASVRHIRPP+
Sbjct 61 ADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL 104
>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/136 (41%), Positives = 80/136 (59%), Gaps = 0/136 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+DVNVL+ AHR D +H R W + + + V +LV + F+R+ T+ R+FE P
Sbjct 1 MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRVFERP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+P A AFV V +QP +P PGPRH + KL + A G+L+PDA A+A+E C
Sbjct 61 TPLDRALAFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHAALAIEAGC 120
Query 121 AVVSLDRDFARFASVR 136
++ D+ F RF +R
Sbjct 121 DWITTDKGFLRFPGLR 136
>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/140 (42%), Positives = 80/140 (58%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+DVN+LL A D P H R W + +L+ + +P +V +FLR+TTN RIFE P
Sbjct 1 MILVDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
A A+VE AQP +PG H ++LR L ++ G+L DA + A+A+E+
Sbjct 61 LSVERAVAYVEEWLAQPVATTVTPGKSHWMILRNLLLDSGTGGNLTTDAHIAALAIEYGH 120
Query 121 AVVSLDRDFARFASVRHIRP 140
V S D DF RF +RHI P
Sbjct 121 TVYSTDNDFKRFQGLRHINP 140
>gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941 [Mycobacterium canettii CIPT
140010059]
gi|157382523|gb|ABV48756.1| Rv2872 [Mycobacterium canettii]
gi|340006055|emb|CCC45225.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=147
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/140 (42%), Positives = 82/140 (59%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M +DVNVL+ AHR D H R +RL D+P +P+ V A F+R+ TNRR+F P
Sbjct 1 MLCVDVNVLVYAHRADLREHTDYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+ DA+ V+A+ A P + PG RH + R+L + DA+G+ I DA L A A+E++
Sbjct 61 TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+S DR FARF +R P
Sbjct 121 TWLSADRGFARFRRLRWRHP 140
>gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycobacterium tuberculosis H37Rv]
gi|15842413|ref|NP_337450.1| hypothetical protein MT2939 [Mycobacterium tuberculosis CDC1551]
gi|31794049|ref|NP_856542.1| hypothetical protein Mb2897 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=147
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/140 (42%), Positives = 82/140 (59%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M +DVNVL+ AHR D H R +RL D+P +P+ V A F+R+ TNRR+F P
Sbjct 1 MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+ DA+ V+A+ A P + PG RH + R+L + DA+G+ I DA L A A+E++
Sbjct 61 TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+S DR FARF +R P
Sbjct 121 TWLSADRGFARFRRLRWRHP 140
>gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991246|ref|YP_002645935.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494402|emb|CAL72883.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774361|dbj|BAH27167.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602792|emb|CCC65470.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=147
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/140 (41%), Positives = 81/140 (58%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M +DVNVL+ AHR D H R +RL D+P +P+ V A F+R+ TNRR+F P
Sbjct 1 MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+ DA+ V+ + A P + PG RH + R+L + DA+G+ I DA L A A+E++
Sbjct 61 TSPQDAWQAVDTLLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+S DR FARF +R P
Sbjct 121 TWLSADRGFARFRRLRWRHP 140
>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=144
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/140 (37%), Positives = 81/140 (58%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+D+N L+ A R D P H W ++L+ D F + ++V + F+R+ T+ R+F P
Sbjct 1 MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVFSPP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
SP DA ++E + AQP+ + +PG RH + +LC A G+++PDA L A+A+E
Sbjct 61 SPLDDALEYLEDIRAQPNCVILAPGERHWRIFLQLCHAVGAKGNVVPDAYLAALAIESGS 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+ + DR ARF +R P
Sbjct 121 ELATADRGVARFPGLRWRHP 140
>gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_20640 [Mycobacterium kansasii ATCC
12478]
gi|157382510|gb|ABV48746.1| Rv2872 [Mycobacterium kansasii ATCC 12478]
Length=143
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/143 (46%), Positives = 87/143 (61%), Gaps = 6/143 (4%)
Query 1 MFLIDVNVLLAAHRGD---HPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIF 57
M +DVNVL+ AHR D HPN+R V +RL D+P +P+ V A F+R+ TNRRIF
Sbjct 1 MHCVDVNVLVNAHRADLREHPNYRDV---LERLANGDEPLGLPDSVLAGFVRVVTNRRIF 57
Query 58 EIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE 117
P+ + DA+ V+A+ A P + PG RH L R+L + DASG+ I DA L A A+E
Sbjct 58 VEPTSQPDAWQAVDALLAAPAAIRLKPGERHWTLFRQLAADIDASGNDIADAYLAAYALE 117
Query 118 HHCAVVSLDRDFARFASVRHIRP 140
++ VS DR FARF +R P
Sbjct 118 NNATWVSADRGFARFGRLRWRHP 140
>gi|297567544|ref|YP_003686516.1| PIN domain-containing protein family protein [Meiothermus silvanus
DSM 9946]
gi|296851993|gb|ADH65008.1| PIN domain protein family protein [Meiothermus silvanus DSM 9946]
Length=143
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/140 (37%), Positives = 75/140 (54%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M+++DVNVL+ A R D P H W LA + VP+ V + LR+ T + ++
Sbjct 1 MYVLDVNVLIYAFRRDSPQHPACYAWLSGSLATGESVGVPSWVELAVLRINTLPSLGDLA 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+P D AF+ + + P + PGP+HL + LC G+ + DA + A+A+EH
Sbjct 61 APLKDVLAFLYELRSHPSYQLVEPGPKHLPIFEDLCQRLGLRGNDLNDAFIAALAIEHGA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+VS DR FARF VR I P
Sbjct 121 TLVSTDRGFARFPGVRRIDP 140
>gi|296130776|ref|YP_003638026.1| PIN domain protein family protein [Cellulomonas flavigena DSM
20109]
gi|296022591|gb|ADG75827.1| PIN domain protein family protein [Cellulomonas flavigena DSM
20109]
Length=143
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/136 (41%), Positives = 76/136 (56%), Gaps = 0/136 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L DVNVL+ A R D P H +R W + + A +P + + V +R+ T+ R+F P
Sbjct 1 MILPDVNVLVGALRADSPRHDALRRWLEAAVDAPEPLGLTDAVLGGTVRVLTHPRVFARP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+P A V + A P + +PG RH ++ LC ADA G+L+ DA A+AVEH
Sbjct 61 TPLRTALDLVGDLRAHPGTVRVAPGDRHWEIVADLCRAADARGNLVADAQHAAVAVEHGA 120
Query 121 AVVSLDRDFARFASVR 136
VS DRDFARF +R
Sbjct 121 TWVSQDRDFARFPGLR 136
>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/140 (38%), Positives = 77/140 (55%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+D N+LL A D P H++ R W ++ L+ D+P V +FLRLTT +F P
Sbjct 1 MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
AF V + A+P + GPRHL ++ +L +G+L DA LGA+A+E +
Sbjct 61 LSPDQAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGTAGNLTSDAHLGALAIEQNA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+ S D DFARF+ V + P
Sbjct 121 QLCSCDSDFARFSGVDWLNP 140
>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=145
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/140 (41%), Positives = 75/140 (54%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M LID N+L+ AH P H W D L+A +P +FLRLTTN R+FE P
Sbjct 1 MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
A+A+A VEA + P +P H LLR L + A+ +LIPDA L A+A+EH
Sbjct 61 LTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPDAHLAALALEHGL 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+ S D DF RF ++ P
Sbjct 121 TLCSTDGDFGRFPRLKWRNP 140
>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/143 (37%), Positives = 81/143 (57%), Gaps = 6/143 (4%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWAS---FLRLTTNRRIF 57
M + DVN+L+ A+ D P+H + W++ LL++++P +P WAS F+RL T+R +
Sbjct 1 MIVPDVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLP---WASALGFIRLMTHRAVL 57
Query 58 EIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE 117
+P + A +V + +++ + PGPRHL LL L +G L D L A+A+E
Sbjct 58 VMPVEPSRAVEYVRSWHSRSNVSALEPGPRHLELLDGLFAALGTAGKLTTDTHLAALAIE 117
Query 118 HHCAVVSLDRDFARFASVRHIRP 140
H C + S D DFARF +R P
Sbjct 118 HQCVLCSNDGDFARFPGLRWRNP 140
>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium
sp.]
Length=143
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/140 (34%), Positives = 73/140 (53%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+D N+LL A P H+ R W+D L+ +P + V ++F+R+ TN R+FE P
Sbjct 1 MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEHP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
P A V++ QP P +H + + A +L+ DA L A+A+E+ C
Sbjct 61 LPLEQALTRVQSWLDQPCTRVIQPTEQHWAVFMMMLKGGQAVANLVTDAHLAALAIENGC 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+ S D DF+RF ++ I P
Sbjct 121 DLASTDSDFSRFPKLKWINP 140
>gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
gi|300534314|gb|EFK55373.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
Length=145
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/139 (34%), Positives = 71/139 (52%), Gaps = 0/139 (0%)
Query 2 FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS 61
+ID NVL+ A + + W D L + P + +F R+TTN +F +P
Sbjct 1 MIIDANVLIYASDENATHFAEASSWLDGALRGTERVGFPWICLLAFQRITTNPALFAMPL 60
Query 62 PRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCA 121
+ A ++E P+ PGP+H +LR L ++DA G L+ DA L A+A+EH +
Sbjct 61 TPSRASDYIENWLKHPNSWVPQPGPQHASILRTLTVDSDARGTLVTDAHLAALAIEHGTS 120
Query 122 VVSLDRDFARFASVRHIRP 140
+ S D DFARF +R P
Sbjct 121 ICSFDSDFARFQGLRWFSP 139
>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/137 (40%), Positives = 74/137 (55%), Gaps = 16/137 (11%)
Query 5 DVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNL---VWASFLRLTTNRRIFEIPS 61
DVN+L+AA R DHP+H R W ++ +A + L V ASFLRL T+ +IF P+
Sbjct 4 DVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFVNPT 63
Query 62 PRADAFAFVEAVNAQPHHLPTSPGPRHLVL------LRKLCDEADASGDLIPDAVLGAIA 115
P A+A F++A+ A SPG VL LR+LC + + + +PDA L A A
Sbjct 64 PMAEALRFIDALLA-------SPGVEQAVLGAEWPALRQLCADKALAANDVPDAWLAAAA 116
Query 116 VEHHCAVVSLDRDFARF 132
+ VVS D DF R
Sbjct 117 IHQGEHVVSFDADFKRL 133
>gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291 [Mycobacterium canettii CIPT
140010059]
gi|340005305|emb|CCC44461.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=144
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 69/141 (49%), Gaps = 0/141 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M ++D NVLL A +H+ W D L+ D + SF+RL T +F P
Sbjct 1 MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLSFVRLATKVGLFPRP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
PR A V A P + +P RH +L ++ +L+ DA L A+AVEH
Sbjct 61 LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA 120
Query 121 AVVSLDRDFARFASVRHIRPP 141
++VS D DF RFA VR +PP
Sbjct 121 SIVSYDSDFGRFAGVRWDQPP 141
>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/139 (36%), Positives = 70/139 (51%), Gaps = 6/139 (4%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWA---SFLRLTTNRRIF 57
M ++D NVLL A +H R W D L+ +D V L W +F+RLTT +F
Sbjct 1 MRIVDANVLLYAVNSSSEHHDASRRWLDGALSGND---VVGLAWVPMLAFVRLTTKHGLF 57
Query 58 EIPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE 117
P DA A + + P + +P RH +L L + G+L+ DA L A+A+E
Sbjct 58 PSPLTPDDAMARITDWCSAPGAVIVNPTARHADVLATLLSDVGTGGNLVNDAHLAALALE 117
Query 118 HHCAVVSLDRDFARFASVR 136
H +VS D DF RF+ V+
Sbjct 118 HRARIVSYDNDFGRFSGVQ 136
>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp.
JDM601]
gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/139 (32%), Positives = 70/139 (51%), Gaps = 0/139 (0%)
Query 2 FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS 61
L+D N+LL A D ++ W + L D+ +P +FLR+ T+ R+ E P
Sbjct 1 MLLDANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPL 60
Query 62 PRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCA 121
P ++A+++V A P + +C +AD +G+L+PDA L A+A+EH
Sbjct 61 PPSEAWSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQLAALAIEHGVE 120
Query 122 VVSLDRDFARFASVRHIRP 140
+ S D DF RF +R P
Sbjct 121 LASADSDFQRFPGLRWFNP 139
>gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
gi|13881843|gb|AAK46445.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
Length=145
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 0/141 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M ++D NVLL A +H+ W D L+ D + +F+RL T +F P
Sbjct 2 MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP 61
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
PR A V A P + +P RH +L ++ +L+ DA L A+AVEH
Sbjct 62 LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA 121
Query 121 AVVSLDRDFARFASVRHIRPP 141
++VS D DF RF VR +PP
Sbjct 122 SIVSYDSDFGRFEGVRWDQPP 142
>gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycobacterium tuberculosis H37Rv]
gi|31793285|ref|NP_855778.1| hypothetical protein Mb2129c [Mycobacterium bovis AF2122/97]
gi|121637987|ref|YP_978211.1| hypothetical protein BCG_2122c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
67 more sequence titles
Length=144
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 0/141 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M ++D NVLL A +H+ W D L+ D + +F+RL T +F P
Sbjct 1 MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
PR A V A P + +P RH +L ++ +L+ DA L A+AVEH
Sbjct 61 LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA 120
Query 121 AVVSLDRDFARFASVRHIRPP 141
++VS D DF RF VR +PP
Sbjct 121 SIVSYDSDFGRFEGVRWDQPP 141
>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=143
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/142 (34%), Positives = 68/142 (48%), Gaps = 4/142 (2%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFE 58
M + D+N+LL A P HR W+ + T P L FLR+ T+ R+
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA 58
Query 59 IPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEH 118
P P ADA A+V +QP+ + GPRHL + L D+ + L D L A +E+
Sbjct 59 APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY 118
Query 119 HCAVVSLDRDFARFASVRHIRP 140
+ S D DFARFA ++ P
Sbjct 119 DAEIHSSDTDFARFADLKWTDP 140
>gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294997046|ref|ZP_06802737.1| hypothetical protein Mtub2_21708 [Mycobacterium tuberculosis
210]
gi|289713784|gb|EFD77796.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326903715|gb|EGE50648.1| toxin [Mycobacterium tuberculosis W-148]
gi|339295024|gb|AEJ47135.1| hypothetical protein CCDC5079_1945 [Mycobacterium tuberculosis
CCDC5079]
gi|339298648|gb|AEJ50758.1| hypothetical protein CCDC5180_1921 [Mycobacterium tuberculosis
CCDC5180]
Length=144
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 0/141 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M ++D NVLL A +H+ W D L+ D + +F+RL T +F P
Sbjct 1 MKIVDANVLLYAVNTASEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
PR A V A P + +P RH +L ++ +L+ DA L A+AVEH
Sbjct 61 LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA 120
Query 121 AVVSLDRDFARFASVRHIRPP 141
++VS D DF RF VR +PP
Sbjct 121 SIVSYDSDFGRFEGVRWDQPP 141
>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/143 (30%), Positives = 73/143 (52%), Gaps = 6/143 (4%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+D N+L+ A+ P+H+ W +R+ ++ +P +P +FLR+ T++ +P
Sbjct 1 MILLDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMAFLRIMTHQ---ALP 57
Query 61 SPR---ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVE 117
PR + V+ + H G H LR+ + A L+ D+ L A+A+E
Sbjct 58 GPRFSMEEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAIE 117
Query 118 HHCAVVSLDRDFARFASVRHIRP 140
+ + S+DRDFARF +R + P
Sbjct 118 NGATLCSVDRDFARFPGLRWVDP 140
>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae
DSM 12333]
gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM
12333]
Length=143
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/132 (35%), Positives = 67/132 (51%), Gaps = 2/132 (1%)
Query 2 FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS 61
++D NVLL A P HR + W + L+ +P +F R+ ++ R P
Sbjct 1 MIVDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPL 60
Query 62 PRADAFAFV-EAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
A+AF+ E + A P +PT PG H +L +L D G+L+ DA L A+A+EH
Sbjct 61 TPGAAWAFITEWLRADPAWIPT-PGDGHAAILGRLLTAGDLRGNLVTDAHLAALALEHGV 119
Query 121 AVVSLDRDFARF 132
+ S D DFARF
Sbjct 120 GICSFDSDFARF 131
>gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|308365680|gb|EFP54531.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=143
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/142 (34%), Positives = 68/142 (48%), Gaps = 0/142 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M ++D NVLL A +H+ W D L+ D + +F+RL T +F P
Sbjct 1 MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
PR A V A P + +P RH +L ++ +L+ DA L A+AVEH
Sbjct 61 LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA 120
Query 121 AVVSLDRDFARFASVRHIRPPI 142
++VS D DF RF VR +P +
Sbjct 121 SIVSYDSDFGRFEGVRWDQPAL 142
>gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_1799 [Mycobacterium sp. JDM601]
gi|333486407|gb|AEF35799.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 67/140 (48%), Gaps = 1/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M ++D NVLL A +H W DR L+ D + +F+RL+T +F P
Sbjct 1 MKIVDANVLLYAVNTAAEHHDASLRWLDRALSGADTVGFAWVPLLAFVRLSTKEGLFPHP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
DA V A + +P PRH +L L A G+L+ DA L A+A+EH
Sbjct 61 LRPEDAVDRVAEWTAASSAVVVNPTPRHADILTGLLARVGAGGNLVNDAHLAALAIEHRG 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+VS D DF RF +R RP
Sbjct 121 GIVSYDADFGRF-GIRWDRP 139
>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/142 (34%), Positives = 67/142 (48%), Gaps = 4/142 (2%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFE 58
M + D+N+LL A P HR W+ + T P L FLR+ T+ R+
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA 58
Query 59 IPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEH 118
P P ADA A+V +QP+ + GPRHL + L D+ + D L A +E+
Sbjct 59 APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHRTTDVQLAAYGIEY 118
Query 119 HCAVVSLDRDFARFASVRHIRP 140
+ S D DFARFA ++ P
Sbjct 119 DAEIHSSDTDFARFADLKWTDP 140
>gi|294054235|ref|YP_003547893.1| PIN domain-containing protein family protein [Coraliomargarita
akajimensis DSM 45221]
gi|293613568|gb|ADE53723.1| PIN domain protein family protein [Coraliomargarita akajimensis
DSM 45221]
Length=142
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/140 (31%), Positives = 66/140 (48%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L D N+L+ AH +H T + W++ L+ + +P +V +F R+ T+ +I E P
Sbjct 1 MILPDANLLIYAHDHSSRDHATAKDWWETALSGSESIGIPWIVVLAFTRILTHPQICEAP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
VE P R L + L ++A G+L DA++ A A EH
Sbjct 61 LGVTQVRELVEQWFDSPQVRLIQTSNRALPVFFDLLEDAGMGGNLSTDALIAAHAREHSA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+ S DRDF RF +R + P
Sbjct 121 VIYSCDRDFDRFMGIRWVNP 140
>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC
12478]
Length=143
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/140 (33%), Positives = 65/140 (47%), Gaps = 0/140 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M + DVN+LL A P HR W+ + + + + FLR+ TN RI P
Sbjct 1 MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARILTEP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+A A+V QP+ P RHL L L ++ + +L D L A A+EH+
Sbjct 61 LSATEAVAYVRDWLTQPNVDLLIPSARHLDLALGLLEQLGTASNLTTDVQLAAYAIEHNA 120
Query 121 AVVSLDRDFARFASVRHIRP 140
+ S D DFARFA + P
Sbjct 121 EMHSSDADFARFAGLAWTNP 140
>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query 2 FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS 61
++D N+LL A ++ W + +LA D +P +FLR+ T+ R+ E P
Sbjct 1 MIVDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPL 60
Query 62 PRADAFAFVEAVNAQPH-HLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
A+ +V A P +P + V R L ++ + +G+L+PDA L A+AVEH
Sbjct 61 SGPAAWRYVAEWLAVPVVWIPPATETTARVYAR-LSEQVEITGNLVPDAQLAALAVEHGV 119
Query 121 AVVSLDRDFARFASVRHIRP 140
+ S D DF RF +R + P
Sbjct 120 ELASADTDFMRFPGLRWMNP 139
>gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691286|gb|EFD58715.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=136
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (33%), Positives = 62/133 (47%), Gaps = 0/133 (0%)
Query 9 LLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPRADAFA 68
+L A +H+ W D L+ D + +F+RL T +F P PR A
Sbjct 1 MLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAIT 60
Query 69 FVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVVSLDRD 128
V A P + +P RH +L ++ +L+ DA L A+AVEH ++VS D D
Sbjct 61 QVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASIVSYDSD 120
Query 129 FARFASVRHIRPP 141
F RF VR +PP
Sbjct 121 FGRFEGVRWDQPP 133
>gi|322435687|ref|YP_004217899.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
gi|321163414|gb|ADW69119.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
Length=143
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 70/141 (50%), Gaps = 1/141 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLA-ADDPFTVPNLVWASFLRLTTNRRIFEI 59
M ++D N+LL A+ H+ R + D + + + +P +FLRL TN +
Sbjct 1 MIVLDANLLLYAYTARSSFHQPARSYLDHIFSDTSESIGIPIQCATAFLRLITNPAVTGA 60
Query 60 PSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHH 119
DA A VE A PH PG H L+ + A+GDLI DA + A A+E+
Sbjct 61 RIAMDDAIARVEEWQALPHVRILYPGEEHWQFLKTVTRNGHATGDLIADAAIAAFALEYG 120
Query 120 CAVVSLDRDFARFASVRHIRP 140
V S DRDFARF+S+R P
Sbjct 121 AVVHSNDRDFARFSSIRWHNP 141
>gi|284122509|ref|ZP_06386855.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829353|gb|EFC33749.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
Length=143
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/135 (28%), Positives = 63/135 (47%), Gaps = 1/135 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M +D NVL+ AHR + H L P+ +P FLR+ T+ R+F P
Sbjct 1 MRALDTNVLIHAHRKEMAKHAEAGQLLRNLAEGTKPWGLPVFCLGEFLRVVTHHRVFTPP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
+ +A A ++ + P PG R+ + A+G+++ DA + A+ +EH
Sbjct 61 TTIQNALAALDGLLQSPTVRLLLPGDRYWSCFHNAISQGQATGNVVFDAQIVAVCLEHGI 120
Query 121 A-VVSLDRDFARFAS 134
++S DR+ RF +
Sbjct 121 DFLISEDRELKRFEN 135
>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces hygroscopicus ATCC 53653]
gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces himastatinicus ATCC 53653]
Length=144
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/141 (27%), Positives = 65/141 (47%), Gaps = 1/141 (0%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M +D N+L+ AHR D P H L A P+ +P F + T+ RI++ P
Sbjct 1 MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC 120
S A A ++A + P + S + LR++ ++ +G ++ D + A+
Sbjct 61 STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQMLEDGKVAGPMVHDGRIAALCANSGV 120
Query 121 -AVVSLDRDFARFASVRHIRP 140
+ S DRDF+RF ++ P
Sbjct 121 RELWSADRDFSRFPALTTRNP 141
>gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_07513 [Mycobacterium tuberculosis
H37Ra]
Length=123
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (32%), Positives = 57/124 (46%), Gaps = 4/124 (3%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFE 58
M + D+N+LL A P HR W+ + T P L FLR+ T+ R+
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA 58
Query 59 IPSPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEH 118
P P ADA A+V +QP+ + GPRHL + L D+ + L D L A +E+
Sbjct 59 APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY 118
Query 119 HCAV 122
+
Sbjct 119 DAEI 122
>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/142 (32%), Positives = 66/142 (47%), Gaps = 2/142 (1%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
MF+ D NVL+ A D P HR + + + FLR+TT+ R+F P
Sbjct 1 MFVSDTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQP 60
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEA-DASGDLIPDAVLGAIAVEHH 119
P A A+ F+EAV A P P RH ++ ++ E +G++I DA + EH
Sbjct 61 WPAARAWEFIEAVLASPGLSLLLPTDRHATVVAEVFGELPHLAGNVIHDAHTAILMREHG 120
Query 120 C-AVVSLDRDFARFASVRHIRP 140
+ + D DF RF + I P
Sbjct 121 IRRIYTRDTDFHRFPFLEPIDP 142
>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 62/140 (45%), Gaps = 1/140 (0%)
Query 2 FLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPS 61
+ +DVNVLL A P H + + D F + ++LR+ T RIF P
Sbjct 3 YSVDVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPL 62
Query 62 PRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCA 121
+DA VE++ + P S G L R + G+L+PDA L + +H
Sbjct 63 SPSDALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVG 122
Query 122 -VVSLDRDFARFASVRHIRP 140
+ + DRDF +F + + P
Sbjct 123 RLYTADRDFRKFDFLEVVDP 142
>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT
140010059]
gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=145
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 4 IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
DV+VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
Query 64 ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV 123
A +E ++PH + R++ D G+L+PDA L A+ H A +
Sbjct 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
Query 124 -SLDRDFARFASVRHIRPPI 142
S DRDF +F +R IR P
Sbjct 125 WSHDRDFRKFEGIR-IRDPF 143
>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
62 more sequence titles
Length=145
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 4 IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
DV+VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
Query 64 ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV 123
A +E ++PH + R++ D G+L+PDA L A+ H A +
Sbjct 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
Query 124 -SLDRDFARFASVRHIRPPI 142
S DRDF +F +R IR P
Sbjct 125 WSHDRDFRKFEGIR-IRDPF 143
>gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycobacterium bovis AF2122/97]
gi|121639611|ref|YP_979835.1| hypothetical protein BCG_3756c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992107|ref|YP_002646796.1| hypothetical protein JTY_3757 [Mycobacterium bovis BCG str. Tokyo
172]
10 more sequence titles
Length=145
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 4 IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
DV+VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 5 FDVDVLVHATHRASPFHDKAKTLVERFLARPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
Query 64 ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV 123
A +E ++PH + R++ D G+L+PDA L A+ H A +
Sbjct 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
Query 124 -SLDRDFARFASVRHIRPPI 142
S DRDF +F +R IR P
Sbjct 125 WSHDRDFRKFEGIR-IRDPF 143
>gi|312622997|ref|YP_004024610.1| PilT protein domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203464|gb|ADQ46791.1| PilT protein domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length=132
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/137 (24%), Positives = 64/137 (47%), Gaps = 14/137 (10%)
Query 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP 60
M L+D +VL+ +G+ N + + F+ +L PF + +L++ L+ N + FE+
Sbjct 1 MILVDTSVLIDFFKGN-TNEKVKK--FEWVLTNKIPFGITHLIYQEILQGAKNEKEFELL 57
Query 61 SPRADAFAFVEAVNAQPHHLPTSPGPRH--LVLLRKLCDEADASGDLIPDAVLGAIAVEH 118
E ++ QP + T + LL C + + D ++ IA+E+
Sbjct 58 K---------EYLSTQPFYELTKGKKSYEEAALLYFKCKKRGINLKSTVDVIIAQIAIEN 108
Query 119 HCAVVSLDRDFARFASV 135
+ ++ DRD+++ A V
Sbjct 109 NLYLLHNDRDYSKIAKV 125
Lambda K H
0.328 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129798780480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40